------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/pcre-8.43_2.txz Installing /packages/All/ncurses-6.1.20190525.txz Installing /packages/All/libedit-3.1.20191211,1.txz Installing /packages/All/lua52-5.2.4.txz Installing /packages/All/swig30-3.0.12.txz Installing /packages/All/libnghttp2-1.40.0.txz Installing /packages/All/ca_root_nss-3.51.txz ===== Message from ca_root_nss-3.51: -- FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem Installing /packages/All/openssl-1.1.1d,1.txz Installing /packages/All/curl-7.68.0.txz Installing /packages/All/expat-2.2.8.txz Installing /packages/All/jsoncpp-1.9.2.txz Installing /packages/All/libuv-1.35.0.txz Installing /packages/All/rhash-1.3.5.txz Installing /packages/All/liblz4-1.9.2_1,1.txz Installing /packages/All/lzo2-2.10_1.txz Installing /packages/All/libarchive-3.4.2,1.txz Installing /packages/All/cmake-3.16.5.txz Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/libffi-3.2.1_3.txz Installing /packages/All/readline-8.0.4.txz Installing /packages/All/gettext-runtime-0.20.1.txz Installing /packages/All/python37-3.7.6.txz ===== Message from python37-3.7.6: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py37-gdbm databases/py-gdbm@py37 py37-sqlite3 databases/py-sqlite3@py37 py37-tkinter x11-toolkits/py-tkinter@py37 Installing /packages/All/icu-66.1,1.txz Installing /packages/All/boost-libs-1.72.0_1.txz ===== Message from boost-libs-1.72.0_1: -- You have built the Boost library with thread support. Don't forget to add -pthread to your linker options when linking your code. Installing /packages/All/hdf-szip-2.1.1.txz Installing /packages/All/hdf5-1.10.6.txz Installing /packages/All/rmf-1.1_8.txz SUCCEEDED 00:00:43 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> py37-rmf-1.1_1 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> py37-rmf-1.1_1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py37-rmf-1.1_1 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> py37-rmf-1.1_1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py37-rmf-1.1_1 for building => SHA256 Checksum OK for salilab-rmf-1.1-f917cf2_GH0.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> py37-rmf-1.1_1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py37-rmf-1.1_1 for building ===> Extracting for py37-rmf-1.1_1 => SHA256 Checksum OK for salilab-rmf-1.1-f917cf2_GH0.tar.gz. Extracted Memory Use: 53.18M SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for py37-rmf-1.1_1 ===> Applying ports patches for py37-rmf-1.1_1 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> py37-rmf-1.1_1 depends on executable: swig3.0 - found ===> py37-rmf-1.1_1 depends on file: /usr/local/bin/cmake - found ===> py37-rmf-1.1_1 depends on file: /usr/local/bin/python3.7 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- ===> py37-rmf-1.1_1 depends on shared library: libRMF.so - found (/usr/local/lib/libRMF.so) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> py37-rmf-1.1_1 depends on executable: swig3.0 - found ===> py37-rmf-1.1_1 depends on file: /usr/local/bin/cmake - found ===> py37-rmf-1.1_1 depends on file: /usr/local/bin/python3.7 - found ===> py37-rmf-1.1_1 depends on shared library: libRMF.so - found (/usr/local/lib/libRMF.so) ===> Configuring for py37-rmf-1.1_1 ===> Performing out-of-source build /bin/mkdir -p /construction/science/py-rmf/.build -- The C compiler identification is GNU 8.3.0 -- The CXX compiler identification is GNU 8.3.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for pthread.h -- Looking for pthread.h - found -- Found Threads: TRUE -- Found Boost: /usr/local/include (found version "1.72.0") found components: system filesystem thread program_options iostreams chrono date_time atomic regex -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/local/lib/libhdf5.so;/usr/local/lib/libsz.so;/usr/lib/libz.so;/usr/lib/libdl.so;/usr/lib/libm.so (found version "1.10.6") -- Found HDF5: /usr/local/lib/libhdf5.so;/usr/local/lib/libsz.so;/usr/lib/libz.so;/usr/lib/libdl.so;/usr/lib/libm.so (found suitable version "1.10.6", minimum required is "1.8") -- Deprecated backends (and hdf5) are enabled -- GCC version: 8.3 -- Enabling g++ C++11 support -- GCC version: 8.3 -- No conversion issue -- Running Making RMF/HDF5.h -- Updating /construction/science/py-rmf/.build/include/RMF/HDF5.h -- Running Making RMF.h -- Updating /construction/science/py-rmf/.build/include/RMF.h -- Running setup_cmake.py -- Running Running setup_cmake.py -- Updating ./test/Files.cmake Updating ./tools/dev_tools/test/Files.cmake Updating ./bin/Files.cmake Updating ./src/Files.cmake Updating ./benchmark/Files.cmake Updating ./examples/Files.cmake -- Logging disabled -- Found SWIG: /usr/local/bin/swig3.0 (found suitable version "3.0.12", minimum required is "1.3.40") -- Python binary is /construction/science/py-rmf/.bin/python (version 3.7.6) -- Found PythonLibs: /usr/local/lib/libpython3.7m.so (found suitable exact version "3.7.6") CMake Warning (dev) at /usr/local/share/cmake/Modules/UseSWIG.cmake:607 (message): Policy CMP0078 is not set: UseSWIG generates standard target names. Run "cmake --help-policy CMP0078" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): swig/CMakeLists.txt:45 (SWIG_ADD_LIBRARY) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at /usr/local/share/cmake/Modules/UseSWIG.cmake:460 (message): Policy CMP0086 is not set: UseSWIG honors SWIG_MODULE_NAME via -module flag. Run "cmake --help-policy CMP0086" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): /usr/local/share/cmake/Modules/UseSWIG.cmake:702 (SWIG_ADD_SOURCE_TO_MODULE) swig/CMakeLists.txt:45 (SWIG_ADD_LIBRARY) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at /usr/local/share/cmake/Modules/UseSWIG.cmake:607 (message): Policy CMP0078 is not set: UseSWIG generates standard target names. Run "cmake --help-policy CMP0078" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): swig/CMakeLists.txt:84 (SWIG_ADD_LIBRARY) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at /usr/local/share/cmake/Modules/UseSWIG.cmake:460 (message): Policy CMP0086 is not set: UseSWIG honors SWIG_MODULE_NAME via -module flag. Run "cmake --help-policy CMP0086" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): /usr/local/share/cmake/Modules/UseSWIG.cmake:702 (SWIG_ADD_SOURCE_TO_MODULE) swig/CMakeLists.txt:84 (SWIG_ADD_LIBRARY) This warning is for project developers. Use -Wno-dev to suppress it. -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_CXX_FLAGS_DEBUG CMAKE_C_FLAGS_DEBUG CMAKE_C_FLAGS_RELEASE CMAKE_EXE_LINKER_FLAGS CMAKE_SHARED_LINKER_FLAGS -- Build files have been written to: /construction/science/py-rmf/.build SUCCEEDED 00:00:03 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for py37-rmf-1.1_1 /usr/local/bin/cmake -S/construction/science/py-rmf/rmf-f917cf2 -B/construction/science/py-rmf/.build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/local/bin/cmake -E cmake_progress_start /construction/science/py-rmf/.build/CMakeFiles /construction/science/py-rmf/.build/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all --- include/CMakeFiles/RMF-decorators.dir/all --- --- swig/CMakeFiles/RMF_HDF5_swig_compilation.dir/all --- --- include/CMakeFiles/RMF-decorators.dir/all --- /usr/bin/make -f include/CMakeFiles/RMF-decorators.dir/build.make include/CMakeFiles/RMF-decorators.dir/depend --- swig/CMakeFiles/RMF_HDF5_swig_compilation.dir/all --- /usr/bin/make -f swig/CMakeFiles/RMF_HDF5_swig_compilation.dir/build.make swig/CMakeFiles/RMF_HDF5_swig_compilation.dir/depend --- include/CMakeFiles/RMF-decorators.dir/all --- --- include/CMakeFiles/RMF-decorators.dir/depend --- --- swig/CMakeFiles/RMF_HDF5_swig_compilation.dir/all --- --- swig/CMakeFiles/RMF_HDF5_swig_compilation.dir/depend --- --- include/CMakeFiles/RMF-decorators.dir/all --- cd /construction/science/py-rmf/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/py-rmf/rmf-f917cf2 /construction/science/py-rmf/rmf-f917cf2/include /construction/science/py-rmf/.build /construction/science/py-rmf/.build/include /construction/science/py-rmf/.build/include/CMakeFiles/RMF-decorators.dir/DependInfo.cmake --- swig/CMakeFiles/RMF_HDF5_swig_compilation.dir/all --- cd /construction/science/py-rmf/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/py-rmf/rmf-f917cf2 /construction/science/py-rmf/rmf-f917cf2/swig /construction/science/py-rmf/.build /construction/science/py-rmf/.build/swig /construction/science/py-rmf/.build/swig/CMakeFiles/RMF_HDF5_swig_compilation.dir/DependInfo.cmake --- include/CMakeFiles/RMF-decorators.dir/all --- Scanning dependencies of target RMF-decorators /usr/bin/make -f include/CMakeFiles/RMF-decorators.dir/build.make include/CMakeFiles/RMF-decorators.dir/build --- include/RMF/decorator/physics.h --- [ 14%] Making decorator headers python /construction/science/py-rmf/rmf-f917cf2/tools/build/make_decorators.py --- swig/CMakeFiles/RMF_HDF5_swig_compilation.dir/all --- Scanning dependencies of target RMF_HDF5_swig_compilation /usr/bin/make -f swig/CMakeFiles/RMF_HDF5_swig_compilation.dir/build.make swig/CMakeFiles/RMF_HDF5_swig_compilation.dir/build --- swig/CMakeFiles/_RMF_HDF5.dir/RMF_HDF5PYTHON.stamp --- [ 28%] Swig compile RMF_HDF5.i for python cd /construction/science/py-rmf/.build/swig && /usr/local/bin/cmake -E make_directory /construction/science/py-rmf/.build/lib /construction/science/py-rmf/.build/lib cd /construction/science/py-rmf/.build/swig && /usr/local/bin/cmake -E touch /construction/science/py-rmf/.build/swig/CMakeFiles/_RMF_HDF5.dir/RMF_HDF5PYTHON.stamp cd /construction/science/py-rmf/.build/swig && /usr/local/bin/cmake -E env SWIG_LIB=/usr/local/share/swig/3.0.12 /usr/local/bin/swig3.0 -python -castmode -naturalvar -Wextra -fvirtual -DPySwigIterator=RMF_HDF5_PySwigIterator -c++ -DSwigPyIterator=RMF_HDF5_SwigPyIterator -DRMFEXPORT -outdir /construction/science/py-rmf/.build/lib -c++ -interface _RMF_HDF5 -I/construction/science/py-rmf/rmf-f917cf2/swig -I/construction/science/py-rmf/rmf-f917cf2/include -I/construction/science/py-rmf/.build/include -I/usr/local/include -I/usr/local/include/python3.7m -o /construction/science/py-rmf/.build/lib/RMF_HDF5PYTHON_wrap.cxx /construction/science/py-rmf/rmf-f917cf2/swig/RMF_HDF5.i --- include/CMakeFiles/RMF-decorators.dir/all --- [ 28%] Built target RMF-decorators --- swig/CMakeFiles/RMF_swig_compilation.dir/all --- /usr/bin/make -f swig/CMakeFiles/RMF_swig_compilation.dir/build.make swig/CMakeFiles/RMF_swig_compilation.dir/depend --- swig/CMakeFiles/RMF_swig_compilation.dir/depend --- cd /construction/science/py-rmf/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/py-rmf/rmf-f917cf2 /construction/science/py-rmf/rmf-f917cf2/swig /construction/science/py-rmf/.build /construction/science/py-rmf/.build/swig /construction/science/py-rmf/.build/swig/CMakeFiles/RMF_swig_compilation.dir/DependInfo.cmake Scanning dependencies of target RMF_swig_compilation /usr/bin/make -f swig/CMakeFiles/RMF_swig_compilation.dir/build.make swig/CMakeFiles/RMF_swig_compilation.dir/build --- swig/CMakeFiles/_RMF.dir/RMFPYTHON.stamp --- [ 42%] Swig compile RMF.i for python cd /construction/science/py-rmf/.build/swig && /usr/local/bin/cmake -E make_directory /construction/science/py-rmf/.build/lib /construction/science/py-rmf/.build/lib cd /construction/science/py-rmf/.build/swig && /usr/local/bin/cmake -E touch /construction/science/py-rmf/.build/swig/CMakeFiles/_RMF.dir/RMFPYTHON.stamp cd /construction/science/py-rmf/.build/swig && /usr/local/bin/cmake -E env SWIG_LIB=/usr/local/share/swig/3.0.12 /usr/local/bin/swig3.0 -python -castmode -naturalvar -Wextra -fvirtual -DPySwigIterator=RMF_PySwigIterator -c++ -DSwigPyIterator=RMF_SwigPyIterator -DRMFEXPORT -outdir /construction/science/py-rmf/.build/lib -c++ -interface _RMF -I/construction/science/py-rmf/rmf-f917cf2/swig -I/construction/science/py-rmf/rmf-f917cf2/include -I/construction/science/py-rmf/.build/include -I/usr/local/include -I/usr/local/include/python3.7m -o /construction/science/py-rmf/.build/lib/RMFPYTHON_wrap.cxx /construction/science/py-rmf/rmf-f917cf2/swig/RMF.i --- swig/CMakeFiles/RMF_HDF5_swig_compilation.dir/all --- [ 42%] Built target RMF_HDF5_swig_compilation --- swig/CMakeFiles/_RMF_HDF5.dir/all --- /usr/bin/make -f swig/CMakeFiles/_RMF_HDF5.dir/build.make swig/CMakeFiles/_RMF_HDF5.dir/depend --- swig/CMakeFiles/_RMF_HDF5.dir/depend --- cd /construction/science/py-rmf/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/py-rmf/rmf-f917cf2 /construction/science/py-rmf/rmf-f917cf2/swig /construction/science/py-rmf/.build /construction/science/py-rmf/.build/swig /construction/science/py-rmf/.build/swig/CMakeFiles/_RMF_HDF5.dir/DependInfo.cmake Scanning dependencies of target _RMF_HDF5 /usr/bin/make -f swig/CMakeFiles/_RMF_HDF5.dir/build.make swig/CMakeFiles/_RMF_HDF5.dir/build --- swig/CMakeFiles/_RMF_HDF5.dir/__/lib/RMF_HDF5PYTHON_wrap.cxx.o --- [ 57%] Building CXX object swig/CMakeFiles/_RMF_HDF5.dir/__/lib/RMF_HDF5PYTHON_wrap.cxx.o cd /construction/science/py-rmf/.build/swig && /usr/bin/c++ -DRMF_SWIG_WRAPPER -D_RMF_HDF5_EXPORTS -I/construction/science/py-rmf/rmf-f917cf2/swig -I/construction/science/py-rmf/rmf-f917cf2/include -I/construction/science/py-rmf/.build/include -I/usr/local/include -I/usr/local/include/python3.7m -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC --std=c++11 -o CMakeFiles/_RMF_HDF5.dir/__/lib/RMF_HDF5PYTHON_wrap.cxx.o -c /construction/science/py-rmf/.build/lib/RMF_HDF5PYTHON_wrap.cxx --- swig/CMakeFiles/RMF_swig_compilation.dir/all --- /construction/science/py-rmf/rmf-f917cf2/include/RMF/BufferConstHandle.h:48: Warning 467: Overloaded method RMF::BufferConstHandle::BufferConstHandle(std::vector< char,std::allocator< char > > const &) not supported (incomplete type checking rule - no precedence level in typecheck typemap for 'std::vector< char,std::allocator< char > > const &'). [ 57%] Built target RMF_swig_compilation --- swig/CMakeFiles/_RMF.dir/all --- /usr/bin/make -f swig/CMakeFiles/_RMF.dir/build.make swig/CMakeFiles/_RMF.dir/depend --- swig/CMakeFiles/_RMF.dir/depend --- cd /construction/science/py-rmf/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/py-rmf/rmf-f917cf2 /construction/science/py-rmf/rmf-f917cf2/swig /construction/science/py-rmf/.build /construction/science/py-rmf/.build/swig /construction/science/py-rmf/.build/swig/CMakeFiles/_RMF.dir/DependInfo.cmake Scanning dependencies of target _RMF /usr/bin/make -f swig/CMakeFiles/_RMF.dir/build.make swig/CMakeFiles/_RMF.dir/build --- swig/CMakeFiles/_RMF.dir/__/lib/RMFPYTHON_wrap.cxx.o --- [ 71%] Building CXX object swig/CMakeFiles/_RMF.dir/__/lib/RMFPYTHON_wrap.cxx.o cd /construction/science/py-rmf/.build/swig && /usr/bin/c++ -DRMF_SWIG_WRAPPER -D_RMF_EXPORTS -I/construction/science/py-rmf/rmf-f917cf2/swig -I/construction/science/py-rmf/rmf-f917cf2/include -I/construction/science/py-rmf/.build/include -I/usr/local/include -I/usr/local/include/python3.7m -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC --std=c++11 -o CMakeFiles/_RMF.dir/__/lib/RMFPYTHON_wrap.cxx.o -c /construction/science/py-rmf/.build/lib/RMFPYTHON_wrap.cxx --- swig/CMakeFiles/_RMF_HDF5.dir/all --- /construction/science/py-rmf/.build/lib/RMF_HDF5PYTHON_wrap.cxx: In function 'void SWIG_Python_addvarlink(PyObject*, char*, PyObject* (*)(), int (*)(PyObject*))': /construction/science/py-rmf/.build/lib/RMF_HDF5PYTHON_wrap.cxx:89319:16: warning: 'char* strncpy(char*, const char*, size_t)' specified bound depends on the length of the source argument [-Wstringop-overflow=] strncpy(gv->name,name,size); ~~~~~~~^~~~~~~~~~~~~~~~~~~~ /construction/science/py-rmf/.build/lib/RMF_HDF5PYTHON_wrap.cxx:89316:27: note: length computed here size_t size = strlen(name)+1; ~~~~~~^~~~~~ --- swig/CMakeFiles/_RMF.dir/all --- /construction/science/py-rmf/.build/lib/RMFPYTHON_wrap.cxx: In function 'void SWIG_Python_addvarlink(PyObject*, char*, PyObject* (*)(), int (*)(PyObject*))': /construction/science/py-rmf/.build/lib/RMFPYTHON_wrap.cxx:169725:16: warning: 'char* strncpy(char*, const char*, size_t)' specified bound depends on the length of the source argument [-Wstringop-overflow=] strncpy(gv->name,name,size); ~~~~~~~^~~~~~~~~~~~~~~~~~~~ /construction/science/py-rmf/.build/lib/RMFPYTHON_wrap.cxx:169722:27: note: length computed here size_t size = strlen(name)+1; ~~~~~~^~~~~~ --- swig/CMakeFiles/_RMF_HDF5.dir/all --- --- lib/_RMF_HDF5.so --- [ 85%] Linking CXX shared module ../lib/_RMF_HDF5.so cd /construction/science/py-rmf/.build/swig && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/_RMF_HDF5.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -lRMF -shared -o ../lib/_RMF_HDF5.so CMakeFiles/_RMF_HDF5.dir/__/lib/RMF_HDF5PYTHON_wrap.cxx.o -L/usr/local/lib [ 85%] Built target _RMF_HDF5 --- swig/CMakeFiles/_RMF.dir/all --- --- lib/_RMF.so --- [100%] Linking CXX shared module ../lib/_RMF.so cd /construction/science/py-rmf/.build/swig && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/_RMF.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -lRMF -shared -o ../lib/_RMF.so CMakeFiles/_RMF.dir/__/lib/RMFPYTHON_wrap.cxx.o -L/usr/local/lib [100%] Built target _RMF /usr/local/bin/cmake -E cmake_progress_start /construction/science/py-rmf/.build/CMakeFiles 0 SUCCEEDED 00:11:41 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> py37-rmf-1.1_1 depends on file: /usr/local/bin/python3.7 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for py37-rmf-1.1_1 ===> py37-rmf-1.1_1 depends on file: /usr/local/bin/python3.7 - found ===> Generating temporary packing list /usr/local/bin/cmake -S/construction/science/py-rmf/rmf-f917cf2 -B/construction/science/py-rmf/.build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/local/bin/cmake -E cmake_progress_start /construction/science/py-rmf/.build/CMakeFiles /construction/science/py-rmf/.build/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f include/CMakeFiles/RMF-decorators.dir/build.make include/CMakeFiles/RMF-decorators.dir/depend cd /construction/science/py-rmf/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/py-rmf/rmf-f917cf2 /construction/science/py-rmf/rmf-f917cf2/include /construction/science/py-rmf/.build /construction/science/py-rmf/.build/include /construction/science/py-rmf/.build/include/CMakeFiles/RMF-decorators.dir/DependInfo.cmake /usr/bin/make -f include/CMakeFiles/RMF-decorators.dir/build.make include/CMakeFiles/RMF-decorators.dir/build [ 14%] Built target RMF-decorators /usr/bin/make -f swig/CMakeFiles/RMF_swig_compilation.dir/build.make swig/CMakeFiles/RMF_swig_compilation.dir/depend cd /construction/science/py-rmf/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/py-rmf/rmf-f917cf2 /construction/science/py-rmf/rmf-f917cf2/swig /construction/science/py-rmf/.build /construction/science/py-rmf/.build/swig /construction/science/py-rmf/.build/swig/CMakeFiles/RMF_swig_compilation.dir/DependInfo.cmake /usr/bin/make -f swig/CMakeFiles/RMF_swig_compilation.dir/build.make swig/CMakeFiles/RMF_swig_compilation.dir/build [ 28%] Built target RMF_swig_compilation /usr/bin/make -f swig/CMakeFiles/_RMF.dir/build.make swig/CMakeFiles/_RMF.dir/depend cd /construction/science/py-rmf/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/py-rmf/rmf-f917cf2 /construction/science/py-rmf/rmf-f917cf2/swig /construction/science/py-rmf/.build /construction/science/py-rmf/.build/swig /construction/science/py-rmf/.build/swig/CMakeFiles/_RMF.dir/DependInfo.cmake /usr/bin/make -f swig/CMakeFiles/_RMF.dir/build.make swig/CMakeFiles/_RMF.dir/build [ 57%] Built target _RMF /usr/bin/make -f swig/CMakeFiles/RMF_HDF5_swig_compilation.dir/build.make swig/CMakeFiles/RMF_HDF5_swig_compilation.dir/depend cd /construction/science/py-rmf/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/py-rmf/rmf-f917cf2 /construction/science/py-rmf/rmf-f917cf2/swig /construction/science/py-rmf/.build /construction/science/py-rmf/.build/swig /construction/science/py-rmf/.build/swig/CMakeFiles/RMF_HDF5_swig_compilation.dir/DependInfo.cmake /usr/bin/make -f swig/CMakeFiles/RMF_HDF5_swig_compilation.dir/build.make swig/CMakeFiles/RMF_HDF5_swig_compilation.dir/build [ 71%] Built target RMF_HDF5_swig_compilation /usr/bin/make -f swig/CMakeFiles/_RMF_HDF5.dir/build.make swig/CMakeFiles/_RMF_HDF5.dir/depend cd /construction/science/py-rmf/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/py-rmf/rmf-f917cf2 /construction/science/py-rmf/rmf-f917cf2/swig /construction/science/py-rmf/.build /construction/science/py-rmf/.build/swig /construction/science/py-rmf/.build/swig/CMakeFiles/_RMF_HDF5.dir/DependInfo.cmake /usr/bin/make -f swig/CMakeFiles/_RMF_HDF5.dir/build.make swig/CMakeFiles/_RMF_HDF5.dir/build [100%] Built target _RMF_HDF5 /usr/local/bin/cmake -E cmake_progress_start /construction/science/py-rmf/.build/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall Installing the project stripped... /usr/local/bin/cmake -DCMAKE_INSTALL_DO_STRIP=1 -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /construction/science/py-rmf/stage/usr/local/lib/python3.7/site-packages/_RMF.so -- Installing: /construction/science/py-rmf/stage/usr/local/lib/python3.7/site-packages/RMF.py -- Installing: /construction/science/py-rmf/stage/usr/local/lib/python3.7/site-packages/_RMF_HDF5.so -- Installing: /construction/science/py-rmf/stage/usr/local/lib/python3.7/site-packages/RMF_HDF5.py ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Error: /usr/local/lib/python3.7/site-packages/_RMF.so is linked to /usr/local/lib/libboost_filesystem.so.1.72.0 from devel/boost-libs but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libboost_filesystem.so:devel/boost-libs Error: /usr/local/lib/python3.7/site-packages/_RMF.so is linked to /usr/local/lib/libboost_system.so.1.72.0 from devel/boost-libs but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libboost_system.so:devel/boost-libs Error: /usr/local/lib/python3.7/site-packages/_RMF.so is linked to /usr/local/lib/libboost_thread.so.1.72.0 from devel/boost-libs but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libboost_thread.so:devel/boost-libs Error: /usr/local/lib/python3.7/site-packages/_RMF.so is linked to /usr/local/lib/libboost_iostreams.so.1.72.0 from devel/boost-libs but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libboost_iostreams.so:devel/boost-libs Error: /usr/local/lib/python3.7/site-packages/_RMF.so is linked to /usr/local/lib/libhdf5.so.103 from science/hdf5 but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libhdf5.so:science/hdf5 Error: /usr/local/lib/python3.7/site-packages/_RMF.so is linked to /usr/local/lib/libsz.so.2 from science/szip but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libsz.so:science/szip Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:05 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for py37-rmf-1.1_1 file sizes/checksums [4]: 0% file sizes/checksums [4]: 100% packing files [4]: 0% packing files [4]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:14 TOTAL TIME 00:12:50