------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/expat-2.2.6_1.tgz Installing /packages/All/indexinfo-0.3.1.tgz Installing /packages/All/libffi-3.2.1_3.tgz Installing /packages/All/ncurses-6.1.20190525.tgz Installing /packages/All/readline-8.0.0.tgz Installing /packages/All/gettext-runtime-0.20.1.tgz Installing /packages/All/openssl-1.0.2s,1.tgz Message from openssl-1.0.2s,1: Edit /usr/local/openssl/openssl.cnf to fit your needs. Installing /packages/All/python27-2.7.16_1.tgz Message from python27-2.7.16_1: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter =========================================================================== Installing /packages/All/py27-setuptools-41.0.1.tgz Message from py27-setuptools-41.0.1: ******************************************************************* Only /usr/local/bin/easy_install-2.7 script has been installed since Python 2.7 is not the default Python version. ******************************************************************* SUCCEEDED 00:00:02 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- x/!\ py27-pyteomics.biolccc-1.5.0: Makefile warnings, please consider fixing /!\ Please set LICENSE for this port ===> NOTICE: The pyteomics.biolccc port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port SUCCEEDED 00:00:10 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- x/!\ py27-pyteomics.biolccc-1.5.0: Makefile warnings, please consider fixing /!\ Please set LICENSE for this port ===> NOTICE: The pyteomics.biolccc port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> Fetching all distfiles required by py27-pyteomics.biolccc-1.5.0 for building SUCCEEDED 00:00:10 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- x/!\ py27-pyteomics.biolccc-1.5.0: Makefile warnings, please consider fixing /!\ Please set LICENSE for this port ===> NOTICE: The pyteomics.biolccc port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> Fetching all distfiles required by py27-pyteomics.biolccc-1.5.0 for building => SHA256 Checksum OK for pyteomics.biolccc-1.5.0.tar.gz. SUCCEEDED 00:00:10 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- x/!\ py27-pyteomics.biolccc-1.5.0: Makefile warnings, please consider fixing /!\ Please set LICENSE for this port ===> NOTICE: The pyteomics.biolccc port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> Fetching all distfiles required by py27-pyteomics.biolccc-1.5.0 for building ===> Extracting for py27-pyteomics.biolccc-1.5.0 => SHA256 Checksum OK for pyteomics.biolccc-1.5.0.tar.gz. Extracted Memory Use: 1.19M SUCCEEDED 00:00:11 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- x===> Patching for py27-pyteomics.biolccc-1.5.0 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- x===> Configuring for py27-pyteomics.biolccc-1.5.0 running config SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- x===> Building for py27-pyteomics.biolccc-1.5.0 running build running build_py creating build creating build/lib.dragonfly-5.7-x86_64-2.7 creating build/lib.dragonfly-5.7-x86_64-2.7/pyteomics copying pyteomics/__init__.py -> build/lib.dragonfly-5.7-x86_64-2.7/pyteomics copying pyteomics/biolccc.py -> build/lib.dragonfly-5.7-x86_64-2.7/pyteomics running build_ext building 'pyteomics._biolccc' extension creating build/temp.dragonfly-5.7-x86_64-2.7 creating build/temp.dragonfly-5.7-x86_64-2.7/src creating build/temp.dragonfly-5.7-x86_64-2.7/src/core creating build/temp.dragonfly-5.7-x86_64-2.7/pyteomics cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I./include -I/usr/local/include/python2.7 -c src/core/chain_model.cpp -o build/temp.dragonfly-5.7-x86_64-2.7/src/core/chain_model.o -DVERSION="1.5.0" In file included from ./include/chain_model.h:5, from src/core/chain_model.cpp:3: ./include/chemicalbasis.h:109:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException); ^~~~~ ./include/chemicalbasis.h:113:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException); ^~~~~ ./include/chemicalbasis.h:128:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException); ^~~~~ ./include/chemicalbasis.h:176:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException); ^~~~~ ./include/chemicalbasis.h:217:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException); ^~~~~ ./include/chemicalbasis.h:238:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException); ^~~~~ ./include/chemicalbasis.h:330:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException); ^~~~~ ./include/chemicalbasis.h:337:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException); ^~~~~ ./include/chemicalbasis.h:344:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException); ^~~~~ ./include/chemicalbasis.h:351:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException); ^~~~~ In file included from src/core/chain_model.cpp:3: ./include/chain_model.h:25:31: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const double temperature) throw (BioLCCCException); ^~~~~ In file included from src/core/chain_model.cpp:4: ./include/parsing.h:27:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const ChemicalBasis &chemBasis) throw(BioLCCCException); ^~~~~ ./include/parsing.h:44:31: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const double temperature) throw (BioLCCCException); ^~~~~ src/core/chain_model.cpp:32:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] ) throw (BioLCCCException) ^~~~~ cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I./include -I/usr/local/include/python2.7 -c src/core/chemicalbasis.cpp -o build/temp.dragonfly-5.7-x86_64-2.7/src/core/chemicalbasis.o -DVERSION="1.5.0" In file included from src/core/chemicalbasis.cpp:1: ./include/chemicalbasis.h:109:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException); ^~~~~ ./include/chemicalbasis.h:113:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException); ^~~~~ ./include/chemicalbasis.h:128:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException); ^~~~~ ./include/chemicalbasis.h:176:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException); ^~~~~ ./include/chemicalbasis.h:217:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException); ^~~~~ ./include/chemicalbasis.h:238:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException); ^~~~~ ./include/chemicalbasis.h:330:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException); ^~~~~ ./include/chemicalbasis.h:337:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException); ^~~~~ ./include/chemicalbasis.h:344:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException); ^~~~~ ./include/chemicalbasis.h:351:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException); ^~~~~ src/core/chemicalbasis.cpp:43:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException) ^~~~~ src/core/chemicalbasis.cpp:55:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException) ^~~~~ src/core/chemicalbasis.cpp:82:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException) ^~~~~ src/core/chemicalbasis.cpp:99:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException) ^~~~~ src/core/chemicalbasis.cpp:115:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException) ^~~~~ src/core/chemicalbasis.cpp:142:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException) ^~~~~ src/core/chemicalbasis.cpp:215:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException) ^~~~~ src/core/chemicalbasis.cpp:231:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException) ^~~~~ src/core/chemicalbasis.cpp:248:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException) ^~~~~ src/core/chemicalbasis.cpp:265:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException) ^~~~~ cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I./include -I/usr/local/include/python2.7 -c src/core/auxiliary.cpp -o build/temp.dragonfly-5.7-x86_64-2.7/src/core/auxiliary.o -DVERSION="1.5.0" cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I./include -I/usr/local/include/python2.7 -c src/core/gradient.cpp -o build/temp.dragonfly-5.7-x86_64-2.7/src/core/gradient.o -DVERSION="1.5.0" In file included from ./include/gradient.h:5, from src/core/gradient.cpp:1: ./include/gradientpoint.h:37:19: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw (GradientPointException); ^~~~~ ./include/gradientpoint.h:47:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw (GradientPointException); ^~~~~ ./include/gradientpoint.h:51:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw (GradientPointException); ^~~~~ In file included from src/core/gradient.cpp:1: ./include/gradient.h:54:14: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(GradientException, GradientPointException); ^~~~~ ./include/gradient.h:58:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(GradientException, GradientPointException); ^~~~~ ./include/gradient.h:65:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(GradientException, GradientPointException); ^~~~~ src/core/gradient.cpp:16:20: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(GradientException, GradientPointException) ^~~~~ src/core/gradient.cpp:23:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(GradientException, GradientPointException) ^~~~~ src/core/gradient.cpp:44:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(GradientException, GradientPointException) ^~~~~ cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I./include -I/usr/local/include/python2.7 -c src/core/parsing.cpp -o build/temp.dragonfly-5.7-x86_64-2.7/src/core/parsing.o -DVERSION="1.5.0" In file included from ./include/parsing.h:5, from src/core/parsing.cpp:2: ./include/chemicalbasis.h:109:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException); ^~~~~ ./include/chemicalbasis.h:113:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException); ^~~~~ ./include/chemicalbasis.h:128:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException); ^~~~~ ./include/chemicalbasis.h:176:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException); ^~~~~ ./include/chemicalbasis.h:217:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException); ^~~~~ ./include/chemicalbasis.h:238:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException); ^~~~~ ./include/chemicalbasis.h:330:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException); ^~~~~ ./include/chemicalbasis.h:337:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException); ^~~~~ ./include/chemicalbasis.h:344:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException); ^~~~~ ./include/chemicalbasis.h:351:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException); ^~~~~ In file included from src/core/parsing.cpp:2: ./include/parsing.h:27:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const ChemicalBasis &chemBasis) throw(BioLCCCException); ^~~~~ ./include/parsing.h:44:31: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const double temperature) throw (BioLCCCException); ^~~~~ src/core/parsing.cpp:16:31: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const double temperature) throw (BioLCCCException) ^~~~~ src/core/parsing.cpp:136:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const ChemicalBasis &chemBasis) throw(BioLCCCException) ^~~~~ cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I./include -I/usr/local/include/python2.7 -c src/core/biolcccexception.cpp -o build/temp.dragonfly-5.7-x86_64-2.7/src/core/biolcccexception.o -DVERSION="1.5.0" cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I./include -I/usr/local/include/python2.7 -c src/core/rod_model.cpp -o build/temp.dragonfly-5.7-x86_64-2.7/src/core/rod_model.o -DVERSION="1.5.0" In file included from ./include/rod_model.h:5, from src/core/rod_model.cpp:8: ./include/chemicalbasis.h:109:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException); ^~~~~ ./include/chemicalbasis.h:113:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException); ^~~~~ ./include/chemicalbasis.h:128:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException); ^~~~~ ./include/chemicalbasis.h:176:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException); ^~~~~ ./include/chemicalbasis.h:217:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException); ^~~~~ ./include/chemicalbasis.h:238:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException); ^~~~~ ./include/chemicalbasis.h:330:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException); ^~~~~ ./include/chemicalbasis.h:337:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException); ^~~~~ ./include/chemicalbasis.h:344:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException); ^~~~~ ./include/chemicalbasis.h:351:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException); ^~~~~ In file included from src/core/rod_model.cpp:8: ./include/rod_model.h:22:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] int n1, int n2) throw(BioLCCCException); ^~~~~ ./include/rod_model.h:38:28: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool reversed = false) throw(BioLCCCException); ^~~~~ ./include/rod_model.h:50:28: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool reversed = false) throw(BioLCCCException); ^~~~~ ./include/rod_model.h:64:7: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] ) throw(BioLCCCException); ^~~~~ In file included from src/core/rod_model.cpp:9: ./include/parsing.h:27:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const ChemicalBasis &chemBasis) throw(BioLCCCException); ^~~~~ ./include/parsing.h:44:31: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const double temperature) throw (BioLCCCException); ^~~~~ src/core/rod_model.cpp:20:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] int n1, int n2) throw(BioLCCCException) ^~~~~ src/core/rod_model.cpp:240:20: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool reversed) throw(BioLCCCException) ^~~~~ src/core/rod_model.cpp:303:20: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool reversed) throw(BioLCCCException) ^~~~~ src/core/rod_model.cpp:341:10: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] ) throw(BioLCCCException) ^~~~~ cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I./include -I/usr/local/include/python2.7 -c src/core/chromoconditions.cpp -o build/temp.dragonfly-5.7-x86_64-2.7/src/core/chromoconditions.o -DVERSION="1.5.0" In file included from ./include/gradient.h:5, from ./include/chromoconditions.h:9, from src/core/chromoconditions.cpp:2: ./include/gradientpoint.h:37:19: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw (GradientPointException); ^~~~~ ./include/gradientpoint.h:47:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw (GradientPointException); ^~~~~ ./include/gradientpoint.h:51:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw (GradientPointException); ^~~~~ In file included from ./include/chromoconditions.h:9, from src/core/chromoconditions.cpp:2: ./include/gradient.h:54:14: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(GradientException, GradientPointException); ^~~~~ ./include/gradient.h:58:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(GradientException, GradientPointException); ^~~~~ ./include/gradient.h:65:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(GradientException, GradientPointException); ^~~~~ In file included from src/core/chromoconditions.cpp:2: ./include/chromoconditions.h:58:22: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChromoConditionsException); ^~~~~ ./include/chromoconditions.h:71:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChromoConditionsException); ^~~~~ ./include/chromoconditions.h:78:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChromoConditionsException); ^~~~~ ./include/chromoconditions.h:85:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChromoConditionsException); ^~~~~ ./include/chromoconditions.h:92:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChromoConditionsException); ^~~~~ ./include/chromoconditions.h:109:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChromoConditionsException); ^~~~~ ./include/chromoconditions.h:125:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChromoConditionsException); ^~~~~ ./include/chromoconditions.h:148:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChromoConditionsException); ^~~~~ ./include/chromoconditions.h:173:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChromoConditionsException); ^~~~~ ./include/chromoconditions.h:193:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChromoConditionsException); ^~~~~ ./include/chromoconditions.h:201:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChromoConditionsException); ^~~~~ ./include/chromoconditions.h:208:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChromoConditionsException); ^~~~~ src/core/chromoconditions.cpp:22:36: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChromoConditionsException) ^~~~~ src/core/chromoconditions.cpp:48:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChromoConditionsException) ^~~~~ src/core/chromoconditions.cpp:65:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChromoConditionsException) ^~~~~ src/core/chromoconditions.cpp:83:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChromoConditionsException) ^~~~~ src/core/chromoconditions.cpp:99:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChromoConditionsException) ^~~~~ src/core/chromoconditions.cpp:122:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChromoConditionsException) ^~~~~ src/core/chromoconditions.cpp:160:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChromoConditionsException) ^~~~~ src/core/chromoconditions.cpp:186:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChromoConditionsException) ^~~~~ src/core/chromoconditions.cpp:209:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChromoConditionsException) ^~~~~ src/core/chromoconditions.cpp:236:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChromoConditionsException) ^~~~~ src/core/chromoconditions.cpp:260:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChromoConditionsException) ^~~~~ src/core/chromoconditions.cpp:283:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChromoConditionsException) ^~~~~ cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I./include -I/usr/local/include/python2.7 -c src/core/chemicalgroup.cpp -o build/temp.dragonfly-5.7-x86_64-2.7/src/core/chemicalgroup.o -DVERSION="1.5.0" cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I./include -I/usr/local/include/python2.7 -c src/core/gradientpoint.cpp -o build/temp.dragonfly-5.7-x86_64-2.7/src/core/gradientpoint.o -DVERSION="1.5.0" In file included from src/core/gradientpoint.cpp:1: ./include/gradientpoint.h:37:19: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw (GradientPointException); ^~~~~ ./include/gradientpoint.h:47:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw (GradientPointException); ^~~~~ ./include/gradientpoint.h:51:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw (GradientPointException); ^~~~~ src/core/gradientpoint.cpp:10:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw (GradientPointException) ^~~~~ src/core/gradientpoint.cpp:28:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw (GradientPointException) ^~~~~ src/core/gradientpoint.cpp:39:5: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw (GradientPointException) ^~~~~ cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I./include -I/usr/local/include/python2.7 -c src/core/biolccc.cpp -o build/temp.dragonfly-5.7-x86_64-2.7/src/core/biolccc.o -DVERSION="1.5.0" In file included from ./include/biolccc.h:6, from src/core/biolccc.cpp:5: ./include/chemicalbasis.h:109:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException); ^~~~~ ./include/chemicalbasis.h:113:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException); ^~~~~ ./include/chemicalbasis.h:128:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException); ^~~~~ ./include/chemicalbasis.h:176:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException); ^~~~~ ./include/chemicalbasis.h:217:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException); ^~~~~ ./include/chemicalbasis.h:238:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException); ^~~~~ ./include/chemicalbasis.h:330:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException); ^~~~~ ./include/chemicalbasis.h:337:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException); ^~~~~ ./include/chemicalbasis.h:344:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException); ^~~~~ ./include/chemicalbasis.h:351:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException); ^~~~~ In file included from ./include/gradient.h:5, from ./include/chromoconditions.h:9, from ./include/biolccc.h:7, from src/core/biolccc.cpp:5: ./include/gradientpoint.h:37:19: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw (GradientPointException); ^~~~~ ./include/gradientpoint.h:47:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw (GradientPointException); ^~~~~ ./include/gradientpoint.h:51:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw (GradientPointException); ^~~~~ In file included from ./include/chromoconditions.h:9, from ./include/biolccc.h:7, from src/core/biolccc.cpp:5: ./include/gradient.h:54:14: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(GradientException, GradientPointException); ^~~~~ ./include/gradient.h:58:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(GradientException, GradientPointException); ^~~~~ ./include/gradient.h:65:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(GradientException, GradientPointException); ^~~~~ In file included from ./include/biolccc.h:7, from src/core/biolccc.cpp:5: ./include/chromoconditions.h:58:22: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChromoConditionsException); ^~~~~ ./include/chromoconditions.h:71:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChromoConditionsException); ^~~~~ ./include/chromoconditions.h:78:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChromoConditionsException); ^~~~~ ./include/chromoconditions.h:85:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChromoConditionsException); ^~~~~ ./include/chromoconditions.h:92:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChromoConditionsException); ^~~~~ ./include/chromoconditions.h:109:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChromoConditionsException); ^~~~~ ./include/chromoconditions.h:125:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChromoConditionsException); ^~~~~ ./include/chromoconditions.h:148:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChromoConditionsException); ^~~~~ ./include/chromoconditions.h:173:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChromoConditionsException); ^~~~~ ./include/chromoconditions.h:193:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChromoConditionsException); ^~~~~ ./include/chromoconditions.h:201:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChromoConditionsException); ^~~~~ ./include/chromoconditions.h:208:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChromoConditionsException); ^~~~~ In file included from ./include/biolccc.h:8, from src/core/biolccc.cpp:5: ./include/parsing.h:27:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const ChemicalBasis &chemBasis) throw(BioLCCCException); ^~~~~ ./include/parsing.h:44:31: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const double temperature) throw (BioLCCCException); ^~~~~ In file included from ./include/biolccc.h:9, from src/core/biolccc.cpp:5: ./include/chain_model.h:25:31: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const double temperature) throw (BioLCCCException); ^~~~~ In file included from ./include/biolccc.h:10, from src/core/biolccc.cpp:5: ./include/rod_model.h:22:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] int n1, int n2) throw(BioLCCCException); ^~~~~ ./include/rod_model.h:38:28: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool reversed = false) throw(BioLCCCException); ^~~~~ ./include/rod_model.h:50:28: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool reversed = false) throw(BioLCCCException); ^~~~~ ./include/rod_model.h:64:7: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] ) throw(BioLCCCException); ^~~~~ In file included from src/core/biolccc.cpp:5: ./include/biolccc.h:47:20: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(BioLCCCException); ^~~~~ ./include/biolccc.h:56:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(BioLCCCException); ^~~~~ ./include/biolccc.h:64:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(BioLCCCException); ^~~~~ ./include/biolccc.h:85:20: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(BioLCCCException); ^~~~~ src/core/biolccc.cpp:18:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const double temperature) throw(BioLCCCException) ^~~~~ src/core/biolccc.cpp:143:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw (BioLCCCException) ^~~~~ src/core/biolccc.cpp:180:22: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] ) throw(BioLCCCException) ^~~~~ src/core/biolccc.cpp:257:20: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(BioLCCCException) ^~~~~ src/core/biolccc.cpp:275:20: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(BioLCCCException) ^~~~~ src/core/biolccc.cpp:287:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(BioLCCCException) ^~~~~ src/core/biolccc.cpp:305:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(BioLCCCException) ^~~~~ cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I./include -I/usr/local/include/python2.7 -c ./pyteomics/biolccc_wrap.cxx -o build/temp.dragonfly-5.7-x86_64-2.7/./pyteomics/biolccc_wrap.o -DVERSION="1.5.0" In file included from ./pyteomics/biolccc_wrap.cxx:2829: ./include/chemicalbasis.h:109:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException); ^~~~~ ./include/chemicalbasis.h:113:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException); ^~~~~ ./include/chemicalbasis.h:128:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException); ^~~~~ ./include/chemicalbasis.h:176:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException); ^~~~~ ./include/chemicalbasis.h:217:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException); ^~~~~ ./include/chemicalbasis.h:238:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException); ^~~~~ ./include/chemicalbasis.h:330:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException); ^~~~~ ./include/chemicalbasis.h:337:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException); ^~~~~ ./include/chemicalbasis.h:344:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException); ^~~~~ ./include/chemicalbasis.h:351:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChemicalBasisException); ^~~~~ In file included from ./pyteomics/biolccc_wrap.cxx:2830: ./include/gradientpoint.h:37:19: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw (GradientPointException); ^~~~~ ./include/gradientpoint.h:47:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw (GradientPointException); ^~~~~ ./include/gradientpoint.h:51:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw (GradientPointException); ^~~~~ In file included from ./pyteomics/biolccc_wrap.cxx:2831: ./include/gradient.h:54:14: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(GradientException, GradientPointException); ^~~~~ ./include/gradient.h:58:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(GradientException, GradientPointException); ^~~~~ ./include/gradient.h:65:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(GradientException, GradientPointException); ^~~~~ In file included from ./pyteomics/biolccc_wrap.cxx:2832: ./include/chromoconditions.h:58:22: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChromoConditionsException); ^~~~~ ./include/chromoconditions.h:71:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChromoConditionsException); ^~~~~ ./include/chromoconditions.h:78:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChromoConditionsException); ^~~~~ ./include/chromoconditions.h:85:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChromoConditionsException); ^~~~~ ./include/chromoconditions.h:92:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChromoConditionsException); ^~~~~ ./include/chromoconditions.h:109:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChromoConditionsException); ^~~~~ ./include/chromoconditions.h:125:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChromoConditionsException); ^~~~~ ./include/chromoconditions.h:148:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChromoConditionsException); ^~~~~ ./include/chromoconditions.h:173:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChromoConditionsException); ^~~~~ ./include/chromoconditions.h:193:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChromoConditionsException); ^~~~~ ./include/chromoconditions.h:201:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChromoConditionsException); ^~~~~ ./include/chromoconditions.h:208:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(ChromoConditionsException); ^~~~~ In file included from ./pyteomics/biolccc_wrap.cxx:2834: ./include/parsing.h:27:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const ChemicalBasis &chemBasis) throw(BioLCCCException); ^~~~~ ./include/parsing.h:44:31: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const double temperature) throw (BioLCCCException); ^~~~~ In file included from ./pyteomics/biolccc_wrap.cxx:2835: ./include/rod_model.h:22:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] int n1, int n2) throw(BioLCCCException); ^~~~~ ./include/rod_model.h:38:28: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool reversed = false) throw(BioLCCCException); ^~~~~ ./include/rod_model.h:50:28: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool reversed = false) throw(BioLCCCException); ^~~~~ ./include/rod_model.h:64:7: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] ) throw(BioLCCCException); ^~~~~ In file included from ./pyteomics/biolccc_wrap.cxx:2836: ./include/chain_model.h:25:31: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const double temperature) throw (BioLCCCException); ^~~~~ In file included from ./pyteomics/biolccc_wrap.cxx:2837: ./include/biolccc.h:47:20: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(BioLCCCException); ^~~~~ ./include/biolccc.h:56:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(BioLCCCException); ^~~~~ ./include/biolccc.h:64:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(BioLCCCException); ^~~~~ ./include/biolccc.h:85:20: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw(BioLCCCException); ^~~~~ ./pyteomics/biolccc_wrap.cxx: In function 'void SWIG_Python_addvarlink(PyObject*, char*, PyObject* (*)(), int (*)(PyObject*))': ./pyteomics/biolccc_wrap.cxx:22712:16: warning: 'char* strncpy(char*, const char*, size_t)' specified bound depends on the length of the source argument [-Wstringop-overflow=] strncpy(gv->name,name,size); ~~~~~~~^~~~~~~~~~~~~~~~~~~~ ./pyteomics/biolccc_wrap.cxx:22709:27: note: length computed here size_t size = strlen(name)+1; ~~~~~~^~~~~~ c++ -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-x86_64-2.7/src/core/chain_model.o build/temp.dragonfly-5.7-x86_64-2.7/src/core/chemicalbasis.o build/temp.dragonfly-5.7-x86_64-2.7/src/core/auxiliary.o build/temp.dragonfly-5.7-x86_64-2.7/src/core/gradient.o build/temp.dragonfly-5.7-x86_64-2.7/src/core/parsing.o build/temp.dragonfly-5.7-x86_64-2.7/src/core/biolcccexception.o build/temp.dragonfly-5.7-x86_64-2.7/src/core/rod_model.o build/temp.dragonfly-5.7-x86_64-2.7/src/core/chromoconditions.o build/temp.dragonfly-5.7-x86_64-2.7/src/core/chemicalgroup.o build/temp.dragonfly-5.7-x86_64-2.7/src/core/gradientpoint.o build/temp.dragonfly-5.7-x86_64-2.7/src/core/biolccc.o build/temp.dragonfly-5.7-x86_64-2.7/./pyteomics/biolccc_wrap.o -L/usr/local/lib -lpython2.7 -o build/lib.dragonfly-5.7-x86_64-2.7/pyteomics/_biolccc.so SUCCEEDED 00:00:26 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- x===> Staging for py27-pyteomics.biolccc-1.5.0 ===> Generating temporary packing list running install running build running build_py running build_ext running install_lib creating /construction/science/py-pyteomics.biolccc/stage/usr/local/lib/python2.7 creating /construction/science/py-pyteomics.biolccc/stage/usr/local/lib/python2.7/site-packages creating /construction/science/py-pyteomics.biolccc/stage/usr/local/lib/python2.7/site-packages/pyteomics copying build/lib.dragonfly-5.7-x86_64-2.7/pyteomics/_biolccc.so -> /construction/science/py-pyteomics.biolccc/stage/usr/local/lib/python2.7/site-packages/pyteomics copying build/lib.dragonfly-5.7-x86_64-2.7/pyteomics/__init__.py -> /construction/science/py-pyteomics.biolccc/stage/usr/local/lib/python2.7/site-packages/pyteomics copying build/lib.dragonfly-5.7-x86_64-2.7/pyteomics/biolccc.py -> /construction/science/py-pyteomics.biolccc/stage/usr/local/lib/python2.7/site-packages/pyteomics byte-compiling /construction/science/py-pyteomics.biolccc/stage/usr/local/lib/python2.7/site-packages/pyteomics/__init__.py to __init__.pyc byte-compiling /construction/science/py-pyteomics.biolccc/stage/usr/local/lib/python2.7/site-packages/pyteomics/biolccc.py to biolccc.pyc writing byte-compilation script '/tmp/tmpSJBdS2.py' /usr/local/bin/python2.7 -O /tmp/tmpSJBdS2.py removing /tmp/tmpSJBdS2.py running install_egg_info running egg_info creating pyteomics.biolccc.egg-info writing pyteomics.biolccc.egg-info/PKG-INFO writing top-level names to pyteomics.biolccc.egg-info/top_level.txt writing dependency_links to pyteomics.biolccc.egg-info/dependency_links.txt writing manifest file 'pyteomics.biolccc.egg-info/SOURCES.txt' reading manifest file 'pyteomics.biolccc.egg-info/SOURCES.txt' writing manifest file 'pyteomics.biolccc.egg-info/SOURCES.txt' Copying pyteomics.biolccc.egg-info to /construction/science/py-pyteomics.biolccc/stage/usr/local/lib/python2.7/site-packages/pyteomics.biolccc-1.5.0-py2.7.egg-info running install_scripts writing list of installed files to '/construction/science/py-pyteomics.biolccc/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Error: /usr/local/lib/python2.7/site-packages/pyteomics/_biolccc.so is linked to /usr/local/lib/libintl.so.8 from devel/gettext-runtime but it is not declared as a dependency Warning: you need USES+=gettext-runtime Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- x====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- x===> Building package for py27-pyteomics.biolccc-1.5.0 file sizes/checksums [11]: 0% file sizes/checksums [11]: 100% packing files [11]: 0% packing files [11]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:00 TOTAL TIME 00:01:11