-------------------------------------------------------------------------------
-- Phase: setup
-------------------------------------------------------------------------------

Installing /packages/All/metis-5.1.0_8.txz
Installing /packages/All/tbb-2020.1.txz
Installing /packages/All/indexinfo-0.3.1.txz
Installing /packages/All/gmp-6.2.0.txz
Installing /packages/All/mpfr-4.0.2.txz
Installing /packages/All/mpc-1.1.0_2.txz
UNFLAVORED devel/binutils -> use devel/binutils@native
Installing /packages/All/gettext-runtime-0.20.1.txz
Installing /packages/All/binutils-2.33.1_2,1.txz
Installing /packages/All/gcc8-8.4.0.txz
=====
Message from gcc8-8.4.0:

--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using

  -Wl,-rpath=/usr/local/lib/gcc8

For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
Installing /packages/All/openblas-0.3.7_2,1.txz
Installing /packages/All/suitesparse-5.4.0_5.txz
Installing /packages/All/expat-2.2.8.txz
Installing /packages/All/libffi-3.2.1_3.txz
Installing /packages/All/ncurses-6.1.20190525.txz
Installing /packages/All/readline-8.0.4.txz
Installing /packages/All/openssl-1.1.1d,1.txz
Installing /packages/All/python27-2.7.17_1.txz
=====
Message from python27-2.7.17_1:

--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:

bsddb           databases/py-bsddb
gdbm            databases/py-gdbm
sqlite3         databases/py-sqlite3
tkinter         x11-toolkits/py-tkinter
Installing /packages/All/py27-setuptools-44.0.0.txz
=====
Message from py27-setuptools-44.0.0:

--
Only /usr/local/bin/easy_install-2.7 script has been installed
  since Python 2.7 is not the default Python version.
Installing /packages/All/py27-numpy-1.16.5_4,1.txz
Installing /packages/All/glm-0.9.8.5_4,1.txz
Installing /packages/All/msgpack-3.2.1.txz
Installing /packages/All/mmtf-cpp-1.0.0_2.txz
Installing /packages/All/xorgproto-2019.2.txz
Installing /packages/All/freetype2-2.10.1.txz
=====
Message from freetype2-2.10.1:

--
The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as
the default, emulating a modern version of ClearType. This change inevitably
leads to different rendering results, and you might change port's options to
adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment
variable).

The environment variable "FREETYPE_PROPERTIES" can be used to control the
driver properties. Example:

FREETYPE_PROPERTIES=truetype:interpreter-version=35 \
	cff:no-stem-darkening=1 \
	autofitter:warping=1

This allows to select, say, the subpixel hinting mode at runtime for a given
application.

If LONG_PCF_NAMES port's option was enabled, the PCF family names may include
the foundry and information whether they contain wide characters. For example,
"Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at
run time with using pcf:no-long-family-names property, if needed. Example:

FREETYPE_PROPERTIES=pcf:no-long-family-names=1

How to recreate fontconfig cache with using such environment variable,
if needed:
# env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv

The controllable properties are listed in the section "Controlling FreeType
Modules" in the reference's table of contents
(/usr/local/share/doc/freetype2/reference/site/index.html, if documentation was installed).
Installing /packages/All/png-1.6.37.txz
Installing /packages/All/libxml2-2.9.10.txz
Installing /packages/All/wayland-1.16.0.txz
Installing /packages/All/pciids-20200222.txz
Installing /packages/All/libpciaccess-0.16.txz
Installing /packages/All/libdrm-2.4.100.txz
Installing /packages/All/libelf-0.8.13_3.txz
Installing /packages/All/libXau-1.0.9.txz
Installing /packages/All/libpthread-stubs-0.4.txz
Installing /packages/All/libXdmcp-1.1.3.txz
Installing /packages/All/libxcb-1.13.1.txz
Installing /packages/All/libX11-1.6.9,1.txz
Installing /packages/All/libXfixes-5.0.3_2.txz
Installing /packages/All/libXdamage-1.1.5.txz
Installing /packages/All/libXext-1.3.4,1.txz
Installing /packages/All/libXrender-0.9.10_2.txz
Installing /packages/All/libXrandr-1.5.2.txz
Installing /packages/All/libxshmfence-1.3.txz
Installing /packages/All/libXxf86vm-1.1.4_3.txz
Installing /packages/All/mesa-libs-18.3.2_4.txz
Installing /packages/All/libGLU-9.0.1.txz
Installing /packages/All/libXi-1.7.10,1.txz
Installing /packages/All/libICE-1.0.10,1.txz
Installing /packages/All/libSM-1.2.3,1.txz
Installing /packages/All/libXt-1.2.0,1.txz
Installing /packages/All/libXmu-1.1.3,1.txz
Installing /packages/All/glew-2.1.0.txz
Installing /packages/All/freeglut-3.0.0_2.txz
=====
Message from freeglut-3.0.0_2:

--
Joystick support is untested and it is unknown if it works.

Do not hesitate to contact x11@FreeBSD.org if this causes issues.
Installing /packages/All/py27-msgpack-0.6.2.txz
Installing /packages/All/jpeg-turbo-2.0.4.txz
Installing /packages/All/fontconfig-2.12.6,1.txz
Running fc-cache to build fontconfig cache...
/usr/local/share/fonts: skipping, no such directory
/usr/local/lib/X11/fonts: skipping, no such directory
/var/db/fontconfig: cleaning cache directory
fc-cache: succeeded
Installing /packages/All/tcl86-8.6.10.txz
Installing /packages/All/libXft-2.3.3.txz
Installing /packages/All/libXScrnSaver-1.2.3_2.txz
Installing /packages/All/tk86-8.6.10_1.txz
Installing /packages/All/blt-2.5.3_4.txz
Installing /packages/All/py27-tkinter-2.7.17_6.txz
Installing /packages/All/py27-Pmw-2.0.1.txz
Installing /packages/All/icu-66.1,1.txz
Installing /packages/All/pcre2-10.34.txz
Installing /packages/All/pcre-8.43_2.txz
Installing /packages/All/libiconv-1.14_11.txz
Installing /packages/All/python37-3.7.6.txz
=====
Message from python37-3.7.6:

--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:

py37-gdbm       databases/py-gdbm@py37
py37-sqlite3    databases/py-sqlite3@py37
py37-tkinter    x11-toolkits/py-tkinter@py37
Installing /packages/All/glib-2.56.3_7,1.txz
No schema files found: doing nothing.
Installing /packages/All/qtchooser-66_1.txz
=====
Message from qtchooser-66_1:

--
qtchooser is a wrapper that allows selecting whether Qt4 or Qt5 binaries for
qmake, moc and other tools will be run when invoking the binaries in $PATH.

By default, the Qt5 versions are run. It is possible to change the behavior by
setting the QT_SELECT environment variable to "qt4". See qtchooser(1) for more
information.
Installing /packages/All/qt5-core-5.13.2_2.txz
Removing qtchooser links
done
Creating qtchooser links
    /usr/local/bin/qlalr
done
Installing /packages/All/dbus-1.12.16.txz
===> Creating groups.
Creating group 'messagebus' with gid '556'.
===> Creating users
Creating user 'messagebus' with uid '556'.
Installing /packages/All/libevdev-1.5.9.txz
Installing /packages/All/graphite2-1.3.13_1.txz
Installing /packages/All/harfbuzz-2.6.4.txz
Installing /packages/All/libudev-devd-0.4.1.txz
Installing /packages/All/libmtdev-1.1.5_2.txz
Installing /packages/All/py37-setuptools-44.0.0.txz
Installing /packages/All/py37-evdev-0.8.1_1.txz
Installing /packages/All/py37-six-1.14.0.txz
Installing /packages/All/py37-pyudev-0.21.0.txz
Installing /packages/All/libinput-1.12.6_1.txz
Installing /packages/All/xcb-util-0.4.0_2,1.txz
Installing /packages/All/xcb-util-image-0.4.0_1.txz
Installing /packages/All/xcb-util-keysyms-0.4.0_1.txz
Installing /packages/All/xcb-util-renderutil-0.3.9_1.txz
Installing /packages/All/xcb-util-wm-0.4.1_3.txz
Installing /packages/All/xkeyboard-config-2.27.txz
Installing /packages/All/libxkbcommon-0.10.0.txz
Installing /packages/All/qt5-dbus-5.13.2_1.txz
Removing qtchooser links
done
Creating qtchooser links
    /usr/local/bin/qdbusxml2cpp
    /usr/local/bin/qdbuscpp2xml
done
Installing /packages/All/ca_root_nss-3.51.txz
=====
Message from ca_root_nss-3.51:

--
FreeBSD does not, and can not warrant that the certification authorities
whose certificates are included in this package have in any way been
audited for trustworthiness or RFC 3647 compliance.

Assessment and verification of trust is the complete responsibility of the
system administrator.


This package installs symlinks to support root certificates discovery by
default for software that uses OpenSSL.

This enables SSL Certificate Verification by client software without manual
intervention.

If you prefer to do this manually, replace the following symlinks with
either an empty file or your site-local certificate bundle.

  * /etc/ssl/cert.pem
  * /usr/local/etc/ssl/cert.pem
  * /usr/local/openssl/cert.pem
Installing /packages/All/qt5-network-5.13.2.txz
Installing /packages/All/hicolor-icon-theme-0.17.txz
Installing /packages/All/xprop-1.2.4.txz
Installing /packages/All/xset-1.2.4_3.txz
Installing /packages/All/xdg-utils-1.1.3_1.txz
Installing /packages/All/vulkan-headers-1.1.108.0.txz
Installing /packages/All/encodings-1.0.5,1.txz
Installing /packages/All/libfontenc-1.1.4.txz
Installing /packages/All/mkfontscale-1.2.1.txz
Installing /packages/All/font-bh-ttf-1.0.3_4.txz
Installing /packages/All/font-misc-meltho-1.0.3_4.txz
Installing /packages/All/font-misc-ethiopic-1.0.3_4.txz
Installing /packages/All/dejavu-2.37_1.txz
=====
Message from dejavu-2.37_1:

--
Make sure that the freetype module is loaded.  If it is not, add the following
line to the "Modules" section of your X Windows configuration file:

	Load "freetype"

Add the following line to the "Files" section of X Windows configuration file:

	FontPath "/usr/local/share/fonts/dejavu/"

Note: your X Windows configuration file is typically /etc/X11/XF86Config
if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org.
Installing /packages/All/xorg-fonts-truetype-7.7_1.txz
Installing /packages/All/qt5-gui-5.13.2_3.txz
Removing qtchooser links
done
Creating qtchooser links
    /usr/local/bin/qvkgen
done
Installing /packages/All/libdaemon-0.14_1.txz
Installing /packages/All/dbus-glib-0.110.txz
Installing /packages/All/gdbm-1.18.1_1.txz
Installing /packages/All/gobject-introspection-1.56.1,1.txz
Installing /packages/All/gnome_subr-1.0.txz
Installing /packages/All/avahi-app-0.7_2.txz
===> Creating groups.
Creating group 'avahi' with gid '558'.
===> Creating users
Creating user 'avahi' with uid '558'.
Installing /packages/All/nettle-3.5.1_1.txz
Installing /packages/All/libtasn1-4.15.0.txz
Installing /packages/All/libunistring-0.9.10_1.txz
Installing /packages/All/libidn2-2.3.0_1.txz
Installing /packages/All/p11-kit-0.23.18.1.txz
Installing /packages/All/tpm-emulator-0.7.4_2.txz
===> Creating groups.
Creating group '_tss' with gid '601'.
===> Creating users
Creating user '_tss' with uid '601'.
Installing /packages/All/trousers-0.3.14_2.txz
===> Creating groups.
Using existing group '_tss'.
===> Creating users
Using existing user '_tss'.
=====
Message from trousers-0.3.14_2:

--
To run tcsd automatically, add the following line to /etc/rc.conf:

tcsd_enable="YES"

You might want to edit /usr/local/etc/tcsd.conf to reflect your setup.

If you want to use tcsd with software TPM emulator, use the following
configuration in /etc/rc.conf:

tcsd_enable="YES"
tcsd_mode="emulator"
tpmd_enable="YES"

To use TPM, add your_account to '_tss' group like following:

# pw groupmod _tss -m your_account
Installing /packages/All/gnutls-3.6.12.txz
Installing /packages/All/libpaper-1.1.24.4.txz
Installing /packages/All/cups-2.2.13.txz
===> Creating groups.
Creating group 'cups' with gid '193'.
===> Creating users
Creating user 'cups' with uid '193'.
Installing /packages/All/qt5-widgets-5.13.2_1.txz
Removing qtchooser links
done
Creating qtchooser links
    /usr/local/bin/uic
done
Installing /packages/All/qt5-printsupport-5.13.2.txz
Installing /packages/All/qscintilla2-qt5-2.11.2_1.txz
Installing /packages/All/py27-enum34-1.1.6.txz
Installing /packages/All/py27-sip-4.19.19_1,1.txz
Installing /packages/All/py27-qt5-core-5.13.1.txz
Installing /packages/All/jasper-2.0.16_1.txz
Installing /packages/All/jbigkit-2.1_1.txz
Installing /packages/All/tiff-4.1.0.txz
Installing /packages/All/lcms-1.19_6,1.txz
Installing /packages/All/libmng-1.0.10_3.txz
Installing /packages/All/giflib-5.2.1.txz
Installing /packages/All/webp-1.1.0.txz
Installing /packages/All/qt5-imageformats-5.13.2_1.txz
Installing /packages/All/py27-qt5-gui-5.13.1.txz
Installing /packages/All/qt5-opengl-5.13.2.txz
Installing /packages/All/py27-qt5-widgets-5.13.1.txz
Installing /packages/All/py27-qt5-opengl-5.13.1.txz
UNFLAVORED devel/binutils -> use devel/binutils@native

SUCCEEDED 00:01:47

-------------------------------------------------------------------------------
-- Phase: check-sanity
-------------------------------------------------------------------------------

/!\ py27-pymol-2.3.0_1: Makefile warnings, please consider fixing /!\

lang/python27 reached End of Life and will be removed on 2020-12-31, consider
converting to a modern version of python

===>   NOTICE:

This port is deprecated; you may wish to reconsider installing it:

Uses deprecated version of python.

It is scheduled to be removed on or after 2020-08-15.


SUCCEEDED 00:00:10

-------------------------------------------------------------------------------
-- Phase: pkg-depends
-------------------------------------------------------------------------------

===>   py27-pymol-2.3.0_1 depends on file: /usr/local/sbin/pkg - found

SUCCEEDED 00:00:00

-------------------------------------------------------------------------------
-- Phase: fetch-depends
-------------------------------------------------------------------------------


SUCCEEDED 00:00:01

-------------------------------------------------------------------------------
-- Phase: fetch
-------------------------------------------------------------------------------

/!\ py27-pymol-2.3.0_1: Makefile warnings, please consider fixing /!\

lang/python27 reached End of Life and will be removed on 2020-12-31, consider
converting to a modern version of python

===>   NOTICE:

This port is deprecated; you may wish to reconsider installing it:

Uses deprecated version of python.

It is scheduled to be removed on or after 2020-08-15.

===>   py27-pymol-2.3.0_1 depends on file: /usr/local/sbin/pkg - found
=> schrodinger-pymol-open-source-v2.3.0_GH0.tar.gz doesn't seem to exist in /distfiles/.
=> Attempting to fetch https://codeload.github.com/schrodinger/pymol-open-source/tar.gz/v2.3.0?dummy=/schrodinger-pymol-open-source-v2.3.0_GH0.tar.gz
fetch: https://codeload.github.com/schrodinger/pymol-open-source/tar.gz/v2.3.0?dummy=/schrodinger-pymol-open-source-v2.3.0_GH0.tar.gz: size unknown
fetch: https://codeload.github.com/schrodinger/pymol-open-source/tar.gz/v2.3.0?dummy=/schrodinger-pymol-open-source-v2.3.0_GH0.tar.gz: size of remote file is not known

schrodinger-pymol-open-source-v2.3.0_GH0.tar.g           0  B    0  Bps
schrodinger-pymol-open-source-v2.3.0_GH0.tar.g        2080 kB 4770 kBps
schrodinger-pymol-open-source-v2.3.0_GH0.tar.g        5456 kB 3359 kBps
schrodinger-pymol-open-source-v2.3.0_GH0.tar.g           9 MB 4943 kBps    02s
===> Fetching all distfiles required by py27-pymol-2.3.0_1 for building

SUCCEEDED 00:00:12

-------------------------------------------------------------------------------
-- Phase: checksum
-------------------------------------------------------------------------------

/!\ py27-pymol-2.3.0_1: Makefile warnings, please consider fixing /!\

lang/python27 reached End of Life and will be removed on 2020-12-31, consider
converting to a modern version of python

===>   NOTICE:

This port is deprecated; you may wish to reconsider installing it:

Uses deprecated version of python.

It is scheduled to be removed on or after 2020-08-15.

===>   py27-pymol-2.3.0_1 depends on file: /usr/local/sbin/pkg - found
===> Fetching all distfiles required by py27-pymol-2.3.0_1 for building
=> SHA256 Checksum OK for schrodinger-pymol-open-source-v2.3.0_GH0.tar.gz.

SUCCEEDED 00:00:10

-------------------------------------------------------------------------------
-- Phase: extract-depends
-------------------------------------------------------------------------------


SUCCEEDED 00:00:01

-------------------------------------------------------------------------------
-- Phase: extract
-------------------------------------------------------------------------------

/!\ py27-pymol-2.3.0_1: Makefile warnings, please consider fixing /!\

lang/python27 reached End of Life and will be removed on 2020-12-31, consider
converting to a modern version of python

===>   NOTICE:

This port is deprecated; you may wish to reconsider installing it:

Uses deprecated version of python.

It is scheduled to be removed on or after 2020-08-15.

===>   py27-pymol-2.3.0_1 depends on file: /usr/local/sbin/pkg - found
===> Fetching all distfiles required by py27-pymol-2.3.0_1 for building
===>  Extracting for py27-pymol-2.3.0_1
=> SHA256 Checksum OK for schrodinger-pymol-open-source-v2.3.0_GH0.tar.gz.

Extracted Memory Use:  41.12M
SUCCEEDED 00:00:10

-------------------------------------------------------------------------------
-- Phase: patch-depends
-------------------------------------------------------------------------------


SUCCEEDED 00:00:01

-------------------------------------------------------------------------------
-- Phase: patch
-------------------------------------------------------------------------------

===>  Patching for py27-pymol-2.3.0_1
===>  Applying ports patches for py27-pymol-2.3.0_1
===>  Applying dragonfly patches for py27-pymol-2.3.0_1

SUCCEEDED 00:00:00

-------------------------------------------------------------------------------
-- Phase: build-depends
-------------------------------------------------------------------------------

===>   py27-pymol-2.3.0_1 depends on package: py27-numpy>=1.15,1<1.19,1 - found
===>   py27-pymol-2.3.0_1 depends on file: /usr/local/include/glm/glm.hpp - found
===>   py27-pymol-2.3.0_1 depends on file: /usr/local/include/mmtf.hpp - found
===>   py27-pymol-2.3.0_1 depends on package: py27-setuptools>0 - found
===>   py27-pymol-2.3.0_1 depends on file: /usr/local/bin/python2.7 - found
===>   py27-pymol-2.3.0_1 depends on package: xorgproto>=0 - found
===>   py27-pymol-2.3.0_1 depends on package: xorgproto>=0 - found

SUCCEEDED 00:00:00

-------------------------------------------------------------------------------
-- Phase: lib-depends
-------------------------------------------------------------------------------

===>   py27-pymol-2.3.0_1 depends on shared library: libfreetype.so - found (/usr/local/lib/libfreetype.so)
===>   py27-pymol-2.3.0_1 depends on shared library: libpng.so - found (/usr/local/lib/libpng.so)
===>   py27-pymol-2.3.0_1 depends on shared library: libmsgpackc.so - found (/usr/local/lib/libmsgpackc.so)
===>   py27-pymol-2.3.0_1 depends on shared library: libGL.so - found (/usr/local/lib/libGL.so)
===>   py27-pymol-2.3.0_1 depends on shared library: libGLEW.so - found (/usr/local/lib/libGLEW.so)
===>   py27-pymol-2.3.0_1 depends on shared library: libGLU.so - found (/usr/local/lib/libGLU.so)
===>   py27-pymol-2.3.0_1 depends on shared library: libglut.so - found (/usr/local/lib/libglut.so)
===>   py27-pymol-2.3.0_1 depends on shared library: libxml2.so - found (/usr/local/lib/libxml2.so)

SUCCEEDED 00:00:00

-------------------------------------------------------------------------------
-- Phase: configure
-------------------------------------------------------------------------------

===>   py27-pymol-2.3.0_1 depends on package: py27-numpy>=1.15,1<1.19,1 - found
===>   py27-pymol-2.3.0_1 depends on file: /usr/local/include/glm/glm.hpp - found
===>   py27-pymol-2.3.0_1 depends on file: /usr/local/include/mmtf.hpp - found
===>   py27-pymol-2.3.0_1 depends on package: py27-setuptools>0 - found
===>   py27-pymol-2.3.0_1 depends on file: /usr/local/bin/python2.7 - found
===>   py27-pymol-2.3.0_1 depends on package: xorgproto>=0 - found
===>   py27-pymol-2.3.0_1 depends on package: xorgproto>=0 - found
===>   py27-pymol-2.3.0_1 depends on shared library: libfreetype.so - found (/usr/local/lib/libfreetype.so)
===>   py27-pymol-2.3.0_1 depends on shared library: libpng.so - found (/usr/local/lib/libpng.so)
===>   py27-pymol-2.3.0_1 depends on shared library: libmsgpackc.so - found (/usr/local/lib/libmsgpackc.so)
===>   py27-pymol-2.3.0_1 depends on shared library: libGL.so - found (/usr/local/lib/libGL.so)
===>   py27-pymol-2.3.0_1 depends on shared library: libGLEW.so - found (/usr/local/lib/libGLEW.so)
===>   py27-pymol-2.3.0_1 depends on shared library: libGLU.so - found (/usr/local/lib/libGLU.so)
===>   py27-pymol-2.3.0_1 depends on shared library: libglut.so - found (/usr/local/lib/libglut.so)
===>   py27-pymol-2.3.0_1 depends on shared library: libxml2.so - found (/usr/local/lib/libxml2.so)
===>  Configuring for py27-pymol-2.3.0_1
running config
Exception in thread Thread-23 (most likely raised during interpreter shutdown):
Traceback (most recent call last):
  File "/usr/local/lib/python2.7/threading.py", line 801, in __bootstrap_inner
  File "/usr/local/lib/python2.7/threading.py", line 754, in run
  File "/usr/local/lib/python2.7/multiprocessing/pool.py", line 102, in worker
  File "/usr/local/lib/python2.7/Queue.py", line 179, in get
  File "/usr/local/lib/python2.7/threading.py", line 384, in notify
<type 'exceptions.TypeError'>: 'NoneType' object is not callable

SUCCEEDED 00:00:02

-------------------------------------------------------------------------------
-- Phase: build
-------------------------------------------------------------------------------

===>  Building for py27-pymol-2.3.0_1
running build
running build_py
creating build/lib.dragonfly-5.9-x86_64-2.7
creating build/lib.dragonfly-5.9-x86_64-2.7/chempy
creating build/lib.dragonfly-5.9-x86_64-2.7/chempy/mmtf
copying modules/chempy/mmtf/io.py -> build/lib.dragonfly-5.9-x86_64-2.7/chempy/mmtf
copying modules/chempy/mmtf/__init__.py -> build/lib.dragonfly-5.9-x86_64-2.7/chempy/mmtf
creating build/lib.dragonfly-5.9-x86_64-2.7/chempy/tinker
copying modules/chempy/tinker/amber.py -> build/lib.dragonfly-5.9-x86_64-2.7/chempy/tinker
copying modules/chempy/tinker/realtime.py -> build/lib.dragonfly-5.9-x86_64-2.7/chempy/tinker
copying modules/chempy/tinker/state.py -> build/lib.dragonfly-5.9-x86_64-2.7/chempy/tinker
copying modules/chempy/tinker/keyword.py -> build/lib.dragonfly-5.9-x86_64-2.7/chempy/tinker
copying modules/chempy/tinker/__init__.py -> build/lib.dragonfly-5.9-x86_64-2.7/chempy/tinker
creating build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt
copying modules/pmg_qt/properties_dialog.py -> build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt
copying modules/pmg_qt/keymapping.py -> build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt
copying modules/pmg_qt/pymol_qt_gui.py -> build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt
copying modules/pmg_qt/advanced_settings_gui.py -> build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt
copying modules/pmg_qt/builder.py -> build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt
copying modules/pmg_qt/file_dialogs.py -> build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt
copying modules/pmg_qt/__init__.py -> build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt
copying modules/pmg_qt/TextEditor.py -> build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt
copying modules/pmg_qt/mimic_tk.py -> build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt
copying modules/pmg_qt/pymol_gl_widget.py -> build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt
copying modules/pmg_qt/mimic_pmg_tk.py -> build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt
copying modules/pmg_qt/volume.py -> build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt
creating build/lib.dragonfly-5.9-x86_64-2.7/pmg_tk
creating build/lib.dragonfly-5.9-x86_64-2.7/pmg_tk/startup
copying modules/pmg_tk/startup/apbs_tools.py -> build/lib.dragonfly-5.9-x86_64-2.7/pmg_tk/startup
copying modules/pmg_tk/startup/__init__.py -> build/lib.dragonfly-5.9-x86_64-2.7/pmg_tk/startup
creating build/lib.dragonfly-5.9-x86_64-2.7/pymol
creating build/lib.dragonfly-5.9-x86_64-2.7/pymol/opengl
creating build/lib.dragonfly-5.9-x86_64-2.7/pymol/opengl/glu
copying modules/pymol/opengl/glu/__init__.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol/opengl/glu
creating build/lib.dragonfly-5.9-x86_64-2.7/pymol/embed
creating build/lib.dragonfly-5.9-x86_64-2.7/pymol/embed/epymol
copying modules/pymol/embed/epymol/__init__.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol/embed/epymol
creating build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt/syntax
copying modules/pmg_qt/syntax/pmlparser.py -> build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt/syntax
copying modules/pmg_qt/syntax/pml.py -> build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt/syntax
copying modules/pmg_qt/syntax/python.py -> build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt/syntax
copying modules/pmg_qt/syntax/__init__.py -> build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt/syntax
creating build/lib.dragonfly-5.9-x86_64-2.7/chempy/fast
copying modules/chempy/fast/__init__.py -> build/lib.dragonfly-5.9-x86_64-2.7/chempy/fast
creating build/lib.dragonfly-5.9-x86_64-2.7/chempy/fragments
copying modules/chempy/fragments/__init__.py -> build/lib.dragonfly-5.9-x86_64-2.7/chempy/fragments
creating build/lib.dragonfly-5.9-x86_64-2.7/pmg_tk/skins
copying modules/pmg_tk/skins/__init__.py -> build/lib.dragonfly-5.9-x86_64-2.7/pmg_tk/skins
creating build/lib.dragonfly-5.9-x86_64-2.7/pymol/contrib
copying modules/pymol/contrib/__init__.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol/contrib
copying modules/pmg_tk/volume.py -> build/lib.dragonfly-5.9-x86_64-2.7/pmg_tk
copying modules/pmg_tk/ColorEditor.py -> build/lib.dragonfly-5.9-x86_64-2.7/pmg_tk
copying modules/pmg_tk/TextEditor.py -> build/lib.dragonfly-5.9-x86_64-2.7/pmg_tk
copying modules/pmg_tk/__init__.py -> build/lib.dragonfly-5.9-x86_64-2.7/pmg_tk
copying modules/pmg_tk/Setting.py -> build/lib.dragonfly-5.9-x86_64-2.7/pmg_tk
copying modules/pmg_tk/PMGApp.py -> build/lib.dragonfly-5.9-x86_64-2.7/pmg_tk
copying modules/pmg_tk/PyMOLMapLoad.py -> build/lib.dragonfly-5.9-x86_64-2.7/pmg_tk
copying modules/pmg_tk/SetEditor.py -> build/lib.dragonfly-5.9-x86_64-2.7/pmg_tk
copying modules/pmg_tk/Demo.py -> build/lib.dragonfly-5.9-x86_64-2.7/pmg_tk
creating build/lib.dragonfly-5.9-x86_64-2.7/pymol/Qt
copying modules/pymol/Qt/utils.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol/Qt
copying modules/pymol/Qt/__init__.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol/Qt
creating build/lib.dragonfly-5.9-x86_64-2.7/pmg_tk/skins/demo
copying modules/pmg_tk/skins/demo/__init__.py -> build/lib.dragonfly-5.9-x86_64-2.7/pmg_tk/skins/demo
creating build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt/forms
copying modules/pmg_qt/forms/__init__.py -> build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt/forms
creating build/lib.dragonfly-5.9-x86_64-2.7/pymol/opengl/glut
copying modules/pymol/opengl/glut/__init__.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol/opengl/glut
creating build/lib.dragonfly-5.9-x86_64-2.7/pymol2
copying modules/pymol2/cmd2.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol2
copying modules/pymol2/__init__.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol2
creating build/lib.dragonfly-5.9-x86_64-2.7/pymol/stereochemistry
copying modules/pymol/stereochemistry/__init__.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol/stereochemistry
copying modules/pymol/embed/__init__.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol/embed
creating build/lib.dragonfly-5.9-x86_64-2.7/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/builder.py -> build/lib.dragonfly-5.9-x86_64-2.7/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/__init__.py -> build/lib.dragonfly-5.9-x86_64-2.7/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/ModalWindow.py -> build/lib.dragonfly-5.9-x86_64-2.7/pmg_tk/skins/normal
creating build/lib.dragonfly-5.9-x86_64-2.7/chempy/champ
copying modules/chempy/champ/formal_charges.py -> build/lib.dragonfly-5.9-x86_64-2.7/chempy/champ
copying modules/chempy/champ/amber99.py -> build/lib.dragonfly-5.9-x86_64-2.7/chempy/champ
copying modules/chempy/champ/__init__.py -> build/lib.dragonfly-5.9-x86_64-2.7/chempy/champ
copying modules/chempy/champ/assign.py -> build/lib.dragonfly-5.9-x86_64-2.7/chempy/champ
creating build/lib.dragonfly-5.9-x86_64-2.7/pymol/embed/wxpymol
copying modules/pymol/embed/wxpymol/__init__.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol/embed/wxpymol
creating build/lib.dragonfly-5.9-x86_64-2.7/pymol/plugins
copying modules/pymol/plugins/managergui.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol/plugins
copying modules/pymol/plugins/legacysupport.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol/plugins
copying modules/pymol/plugins/repository.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol/plugins
copying modules/pymol/plugins/installation.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol/plugins
copying modules/pymol/plugins/managergui_qt.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol/plugins
copying modules/pymol/plugins/__init__.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol/plugins
creating build/lib.dragonfly-5.9-x86_64-2.7/pymol/opengl/gl
copying modules/pymol/opengl/gl/__init__.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol/opengl/gl
copying modules/pymol/cgo.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol
copying modules/pymol/checking.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol
copying modules/pymol/colorramping.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol
copying modules/pymol/completing.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol
copying modules/pymol/lazyio.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol
copying modules/pymol/keywords.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol
copying modules/pymol/callback.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol
copying modules/pymol/computing.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol
copying modules/pymol/xray.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol
copying modules/pymol/xwin.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol
copying modules/pymol/_gui.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol
copying modules/pymol/internal.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol
copying modules/pymol/importing.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol
copying modules/pymol/editor.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol
copying modules/pymol/diagnosing.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol
copying modules/pymol/__main__.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol
copying modules/pymol/fitting.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol
copying modules/pymol/creating.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol
copying modules/pymol/externing.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol
copying modules/pymol/feedingback.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol
copying modules/pymol/controlling.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol
copying modules/pymol/parser.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol
copying modules/pymol/editing.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol
copying modules/pymol/monitoring.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol
copying modules/pymol/movie.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol
copying modules/pymol/gui.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol
copying modules/pymol/menu.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol
copying modules/pymol/__init__.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol
copying modules/pymol/morphing.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol
copying modules/pymol/helping.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol
copying modules/pymol/headering.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol
copying modules/pymol/keyboard.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol
copying modules/pymol/constants.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol
copying modules/pymol/moving.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol
copying modules/pymol/m4x.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol
copying modules/pymol/api.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol
copying modules/pymol/viewing.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol
copying modules/pymol/selecting.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol
copying modules/pymol/cmd.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol
copying modules/pymol/vfont.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol
copying modules/pymol/exporting.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol
copying modules/pymol/povray.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol
copying modules/pymol/shortcut.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol
copying modules/pymol/setting.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol
copying modules/pymol/rpc.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol
copying modules/pymol/locking.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol
copying modules/pymol/util.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol
copying modules/pymol/selector.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol
copying modules/pymol/seqalign.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol
copying modules/pymol/querying.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol
copying modules/pymol/pymolhttpd.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol
copying modules/pymol/preset.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol
copying modules/pymol/colorprinting.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol
copying modules/pymol/parsing.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol
copying modules/pymol/experimenting.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol
copying modules/pymol/constants_palette.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol
copying modules/pymol/commanding.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol
copying modules/pymol/invocation.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol
copying modules/pymol/wizarding.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol
creating build/lib.dragonfly-5.9-x86_64-2.7/chempy/bmin
copying modules/chempy/bmin/commands.py -> build/lib.dragonfly-5.9-x86_64-2.7/chempy/bmin
copying modules/chempy/bmin/__init__.py -> build/lib.dragonfly-5.9-x86_64-2.7/chempy/bmin
copying modules/chempy/bmin/util.py -> build/lib.dragonfly-5.9-x86_64-2.7/chempy/bmin
copying modules/chempy/bmin/realtime.py -> build/lib.dragonfly-5.9-x86_64-2.7/chempy/bmin
copying modules/chempy/bmin/state.py -> build/lib.dragonfly-5.9-x86_64-2.7/chempy/bmin
copying modules/chempy/water_amber.py -> build/lib.dragonfly-5.9-x86_64-2.7/chempy
copying modules/chempy/cc1.py -> build/lib.dragonfly-5.9-x86_64-2.7/chempy
copying modules/chempy/cpv.py -> build/lib.dragonfly-5.9-x86_64-2.7/chempy
copying modules/chempy/bond_amber.py -> build/lib.dragonfly-5.9-x86_64-2.7/chempy
copying modules/chempy/bond_mmff.py -> build/lib.dragonfly-5.9-x86_64-2.7/chempy
copying modules/chempy/mmd.py -> build/lib.dragonfly-5.9-x86_64-2.7/chempy
copying modules/chempy/models.py -> build/lib.dragonfly-5.9-x86_64-2.7/chempy
copying modules/chempy/mass.py -> build/lib.dragonfly-5.9-x86_64-2.7/chempy
copying modules/chempy/mae.py -> build/lib.dragonfly-5.9-x86_64-2.7/chempy
copying modules/chempy/sdf.py -> build/lib.dragonfly-5.9-x86_64-2.7/chempy
copying modules/chempy/place.py -> build/lib.dragonfly-5.9-x86_64-2.7/chempy
copying modules/chempy/brick.py -> build/lib.dragonfly-5.9-x86_64-2.7/chempy
copying modules/chempy/solvate.py -> build/lib.dragonfly-5.9-x86_64-2.7/chempy
copying modules/chempy/lst.py -> build/lib.dragonfly-5.9-x86_64-2.7/chempy
copying modules/chempy/gms.py -> build/lib.dragonfly-5.9-x86_64-2.7/chempy
copying modules/chempy/protein.py -> build/lib.dragonfly-5.9-x86_64-2.7/chempy
copying modules/chempy/protein_amber.py -> build/lib.dragonfly-5.9-x86_64-2.7/chempy
copying modules/chempy/__init__.py -> build/lib.dragonfly-5.9-x86_64-2.7/chempy
copying modules/chempy/hetatm.py -> build/lib.dragonfly-5.9-x86_64-2.7/chempy
copying modules/chempy/charge.py -> build/lib.dragonfly-5.9-x86_64-2.7/chempy
copying modules/chempy/protein_mmff.py -> build/lib.dragonfly-5.9-x86_64-2.7/chempy
copying modules/chempy/arc.py -> build/lib.dragonfly-5.9-x86_64-2.7/chempy
copying modules/chempy/gamess1.py -> build/lib.dragonfly-5.9-x86_64-2.7/chempy
copying modules/chempy/protein_amber99.py -> build/lib.dragonfly-5.9-x86_64-2.7/chempy
copying modules/chempy/mol2.py -> build/lib.dragonfly-5.9-x86_64-2.7/chempy
copying modules/chempy/io.py -> build/lib.dragonfly-5.9-x86_64-2.7/chempy
copying modules/chempy/dictdb.py -> build/lib.dragonfly-5.9-x86_64-2.7/chempy
copying modules/chempy/pkl.py -> build/lib.dragonfly-5.9-x86_64-2.7/chempy
copying modules/chempy/xyz.py -> build/lib.dragonfly-5.9-x86_64-2.7/chempy
copying modules/chempy/pdb.py -> build/lib.dragonfly-5.9-x86_64-2.7/chempy
copying modules/chempy/mol.py -> build/lib.dragonfly-5.9-x86_64-2.7/chempy
copying modules/chempy/cif.py -> build/lib.dragonfly-5.9-x86_64-2.7/chempy
copying modules/chempy/cex.py -> build/lib.dragonfly-5.9-x86_64-2.7/chempy
copying modules/chempy/bonds.py -> build/lib.dragonfly-5.9-x86_64-2.7/chempy
copying modules/chempy/map.py -> build/lib.dragonfly-5.9-x86_64-2.7/chempy
copying modules/chempy/water_residues.py -> build/lib.dragonfly-5.9-x86_64-2.7/chempy
copying modules/chempy/neighbor.py -> build/lib.dragonfly-5.9-x86_64-2.7/chempy
copying modules/chempy/protein_residues.py -> build/lib.dragonfly-5.9-x86_64-2.7/chempy
creating build/lib.dragonfly-5.9-x86_64-2.7/pymol/wizard
copying modules/pymol/wizard/label.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol/wizard
copying modules/pymol/wizard/security.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol/wizard
copying modules/pymol/wizard/toggle.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol/wizard
copying modules/pymol/wizard/sculpting.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol/wizard
copying modules/pymol/wizard/pseudoatom.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol/wizard
copying modules/pymol/wizard/annotation.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol/wizard
copying modules/pymol/wizard/benchmark.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol/wizard
copying modules/pymol/wizard/cleanup.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol/wizard
copying modules/pymol/wizard/__init__.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol/wizard
copying modules/pymol/wizard/distance.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol/wizard
copying modules/pymol/wizard/demo.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol/wizard
copying modules/pymol/wizard/box.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol/wizard
copying modules/pymol/wizard/appearance.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol/wizard
copying modules/pymol/wizard/charge.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol/wizard
copying modules/pymol/wizard/dragging.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol/wizard
copying modules/pymol/wizard/command.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol/wizard
copying modules/pymol/wizard/density.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol/wizard
copying modules/pymol/wizard/message.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol/wizard
copying modules/pymol/wizard/measurement.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol/wizard
copying modules/pymol/wizard/fedora.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol/wizard
copying modules/pymol/wizard/pair_fit.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol/wizard
copying modules/pymol/wizard/stereodemo.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol/wizard
copying modules/pymol/wizard/nucmutagenesis.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol/wizard
copying modules/pymol/wizard/renaming.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol/wizard
copying modules/pymol/wizard/filter.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol/wizard
copying modules/pymol/wizard/mutagenesis.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol/wizard
copying modules/pymol/opengl/__init__.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymol/opengl
copying modules/pmg_qt/forms/pluginmanager.ui -> build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt/forms
copying modules/pmg_qt/forms/fetch.ui -> build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt/forms
copying modules/pmg_qt/forms/png.ui -> build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt/forms
copying modules/pmg_qt/forms/props.ui -> build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt/forms
copying modules/pmg_qt/forms/load_mtz.ui -> build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt/forms
copying modules/pmg_qt/forms/load_traj.ui -> build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt/forms
copying modules/pmg_qt/forms/askpartial.ui -> build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt/forms
copying modules/pmg_qt/forms/load_map.ui -> build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt/forms
copying modules/pmg_qt/forms/load_mae.ui -> build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt/forms
copying modules/pmg_qt/forms/render.ui -> build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt/forms
copying modules/pmg_qt/forms/save_object.ui -> build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt/forms
copying modules/pmg_qt/forms/save_molecule.ui -> build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt/forms
copying modules/pmg_qt/forms/pluginitem.ui -> build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt/forms
copying modules/pmg_qt/forms/movieexport.ui -> build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt/forms
copying modules/pmg_qt/forms/load_aln.ui -> build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt/forms
copying modules/pmg_qt/forms/colors.ui -> build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt/forms
running build_ext
building 'pymol._cmd' extension
creating build/temp.dragonfly-5.9-x86_64-2.7
creating build/temp.dragonfly-5.9-x86_64-2.7/build
creating build/temp.dragonfly-5.9-x86_64-2.7/build/generated
creating build/temp.dragonfly-5.9-x86_64-2.7/contrib
creating build/temp.dragonfly-5.9-x86_64-2.7/contrib/mmtf-c
creating build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc
creating build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins
creating build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin
creating build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src
creating build/temp.dragonfly-5.9-x86_64-2.7/layer0
creating build/temp.dragonfly-5.9-x86_64-2.7/layer1
creating build/temp.dragonfly-5.9-x86_64-2.7/layer2
creating build/temp.dragonfly-5.9-x86_64-2.7/layer3
creating build/temp.dragonfly-5.9-x86_64-2.7/layer4
creating build/temp.dragonfly-5.9-x86_64-2.7/layer5
creating build/temp.dragonfly-5.9-x86_64-2.7/modules
creating build/temp.dragonfly-5.9-x86_64-2.7/modules/cealign
creating build/temp.dragonfly-5.9-x86_64-2.7/modules/cealign/src
creating build/temp.dragonfly-5.9-x86_64-2.7/ov
creating build/temp.dragonfly-5.9-x86_64-2.7/ov/src
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c build/generated/ShaderText.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/build/generated/ShaderText.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/corplugin.c -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/carplugin.c -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/mmtf-c/mmtf_parser.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/mmtf-c/mmtf_parser.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/offplugin.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/inthash.c -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/inthash.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer0/Block.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer0/Block.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer0/Debug.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer0/Debug.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer0/Err.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer0/Err.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer0/Field.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer0/Field.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer0/Deferred.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer0/Deferred.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer0/GenericBuffer.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer0/GenericBuffer.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer0/Isosurf.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer0/Isosurf.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer0/Match.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer0/Match.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer0/MemoryDebug.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer0/MemoryDebug.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer0/Parse.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer0/Parse.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer0/ShaderMgr.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer0/ShaderMgr.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer0/Sphere.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer0/Sphere.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer0/Texture.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer0/Texture.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer0/MyPNG.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer0/MyPNG.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer0/Triangle.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer0/Triangle.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer0/Util2.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer0/Util2.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer0/Word.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer0/Word.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/Basis.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer1/Basis.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/ButMode.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer1/ButMode.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/CGO.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer1/CGO.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer0/Pixmap.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer0/Pixmap.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/Character.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer1/Character.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer0/Feedback.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer0/Feedback.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer0/Matrix.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer0/Matrix.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/Control.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer1/Control.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer0/Vector.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer0/Vector.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/Font.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer1/Font.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/FontGLUT8x13.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer1/FontGLUT8x13.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/FontGLUTHel10.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer1/FontGLUTHel10.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/FontGLUT9x15.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer1/FontGLUT9x15.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/FontGLUT.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer1/FontGLUT.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/FontGLUTHel18.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer1/FontGLUTHel18.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/Movie.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer1/Movie.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/P.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer1/P.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/FontGLUTHel12.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer1/FontGLUTHel12.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/Pop.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer1/Pop.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/Ray.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer1/Ray.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/FontType.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer1/FontType.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/Scene.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer1/Scene.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/hash.c -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/hash.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/SceneRay.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer1/SceneRay.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/ScrollBar.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer1/ScrollBar.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/Setting.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer1/Setting.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/Symmetry.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer1/Symmetry.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer0/Tetsurf.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer0/Tetsurf.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/TypeFace.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer1/TypeFace.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/PyMOLObject.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer1/PyMOLObject.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/View.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer1/View.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer0/GraphicsUtil.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer0/GraphicsUtil.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/Wizard.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer1/Wizard.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer0/File.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer0/File.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/AtomInfo.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer2/AtomInfo.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer0/Tracker.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer0/Tracker.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer0/os_gl.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer0/os_gl.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/BondTypeHistory.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer2/BondTypeHistory.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/CifMoleculeReader.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer2/CifMoleculeReader.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/DistSet.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer2/DistSet.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/HydrogenAdder.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer2/HydrogenAdder.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/MmtfMoleculeReader.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer2/MmtfMoleculeReader.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/Color.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer1/Color.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer0/Crystal.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer0/Crystal.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/MolV3000.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer2/MolV3000.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/ObjectCGO.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer2/ObjectCGO.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/Seq.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer1/Seq.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/Text.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer1/Text.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/ObjectDist.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer2/ObjectDist.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/Extrude.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer1/Extrude.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/CifFile.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer2/CifFile.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/PConv.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer1/PConv.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
layer1/PConv.cpp:38: warning: "PyString_Check" redefined
 #define PyString_Check(o) (PyBytes_CheckExact(o) || PyUnicode_Check(o))
 
In file included from /usr/local/include/python2.7/Python.h:97,
                 from layer0/os_python.h:34,
                 from layer1/PConv.cpp:17:
/usr/local/include/python2.7/stringobject.h:58: note: this is the location of the previous definition
 #define PyString_Check(op) \
 
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/AssemblyHelpers.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer2/AssemblyHelpers.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/ObjectGadgetRamp.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer2/ObjectGadgetRamp.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer0/Util.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer0/Util.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/ObjectMap.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer2/ObjectMap.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/ObjectMolecule.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer2/ObjectMolecule.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/MmodTyping.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer2/MmodTyping.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/ObjectSlice.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer2/ObjectSlice.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/Mol2Typing.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer2/Mol2Typing.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/ObjectVolume.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer2/ObjectVolume.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/RepCartoon.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer2/RepCartoon.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/GadgetSet.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer2/GadgetSet.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/SceneRender.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer1/SceneRender.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/ObjectAlignment.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer2/ObjectAlignment.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/RepDihedral.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer2/RepDihedral.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/RepDistLabel.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer2/RepDistLabel.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/RepEllipsoid.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer2/RepEllipsoid.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/RepMesh.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer2/RepMesh.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/RepNonbondedSphere.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer2/RepNonbondedSphere.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/AtomInfoHistory.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer2/AtomInfoHistory.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer0/Map.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer0/Map.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/ObjectCallback.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer2/ObjectCallback.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/ObjectGadget.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer2/ObjectGadget.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/RepSphere.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer2/RepSphere.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/RepSphereImmediate.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer2/RepSphereImmediate.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/ObjectGroup.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer2/ObjectGroup.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/RepWireBond.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer2/RepWireBond.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/RepDistDash.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer2/RepDistDash.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer0/ShaderPrg.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer0/ShaderPrg.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/SculptCache.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer2/SculptCache.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/Ortho.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer1/Ortho.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/VFont.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer2/VFont.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer3/CifDataValueFormatter.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer3/CifDataValueFormatter.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer3/Executive.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer3/Executive.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer3/Editor.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer3/Editor.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer3/MoleculeExporter.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer3/MoleculeExporter.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer3/PlugIOManager.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer3/PlugIOManager.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/ScenePicking.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer1/ScenePicking.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer3/Selector.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer3/Selector.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/RepDot.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer2/RepDot.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/RepRibbon.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer2/RepRibbon.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer4/Export.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer4/Export.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer4/PopUp.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer4/PopUp.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/ObjectSurface.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer2/ObjectSurface.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/SideChainHelper.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer2/SideChainHelper.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer5/TestPyMOL.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer5/TestPyMOL.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/RepLabel.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer2/RepLabel.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/CoordSet.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer2/CoordSet.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/RepSphereGenerate.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer2/RepSphereGenerate.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/RepSurface.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer2/RepSurface.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c modules/cealign/src/ccealignmodule.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/modules/cealign/src/ccealignmodule.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c ov/src/OVHeap.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/ov/src/OVHeap.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/RepAngle.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer2/RepAngle.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c ov/src/OVHeapArray.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/ov/src/OVHeapArray.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c ov/src/OVLexicon.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/ov/src/OVLexicon.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c ov/src/OVOneToOne.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/ov/src/OVOneToOne.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c ov/src/ov_utility.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/ov/src/ov_utility.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c ov/src/OVOneToAny.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/ov/src/OVOneToAny.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/ObjectMesh.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer2/ObjectMesh.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c ov/src/OVRandom.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/ov/src/OVRandom.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer4/Menu.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer4/Menu.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer3/AtomIterators.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer3/AtomIterators.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer5/PyMOL.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer5/PyMOL.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/Sculpt.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer2/Sculpt.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer5/main.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer5/main.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/RepNonbonded.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer2/RepNonbonded.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer3/Seeker.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer3/Seeker.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/Rep.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer1/Rep.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c ov/src/OVContext.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/ov/src/OVContext.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/Shaker.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer1/Shaker.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/RepCylBond.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer2/RepCylBond.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer3/MovieScene.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer3/MovieScene.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/ObjectMolecule2.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer2/ObjectMolecule2.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/COLLADA.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer1/COLLADA.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer3/MaeExportHelpers.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer3/MaeExportHelpers.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer4/Cmd.cpp -o build/temp.dragonfly-5.9-x86_64-2.7/layer4/Cmd.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
c++ -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.9-x86_64-2.7/build/generated/ShaderText.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/mmtf-c/mmtf_parser.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/hash.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/inthash.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o build/temp.dragonfly-5.9-x86_64-2.7/layer0/Block.o build/temp.dragonfly-5.9-x86_64-2.7/layer0/Crystal.o build/temp.dragonfly-5.9-x86_64-2.7/layer0/Debug.o build/temp.dragonfly-5.9-x86_64-2.7/layer0/Deferred.o build/temp.dragonfly-5.9-x86_64-2.7/layer0/Err.o build/temp.dragonfly-5.9-x86_64-2.7/layer0/Feedback.o build/temp.dragonfly-5.9-x86_64-2.7/layer0/Field.o build/temp.dragonfly-5.9-x86_64-2.7/layer0/File.o build/temp.dragonfly-5.9-x86_64-2.7/layer0/GenericBuffer.o build/temp.dragonfly-5.9-x86_64-2.7/layer0/GraphicsUtil.o build/temp.dragonfly-5.9-x86_64-2.7/layer0/Isosurf.o build/temp.dragonfly-5.9-x86_64-2.7/layer0/Map.o build/temp.dragonfly-5.9-x86_64-2.7/layer0/Match.o build/temp.dragonfly-5.9-x86_64-2.7/layer0/Matrix.o build/temp.dragonfly-5.9-x86_64-2.7/layer0/MemoryDebug.o build/temp.dragonfly-5.9-x86_64-2.7/layer0/MyPNG.o build/temp.dragonfly-5.9-x86_64-2.7/layer0/Parse.o build/temp.dragonfly-5.9-x86_64-2.7/layer0/Pixmap.o build/temp.dragonfly-5.9-x86_64-2.7/layer0/ShaderMgr.o build/temp.dragonfly-5.9-x86_64-2.7/layer0/ShaderPrg.o build/temp.dragonfly-5.9-x86_64-2.7/layer0/Sphere.o build/temp.dragonfly-5.9-x86_64-2.7/layer0/Tetsurf.o build/temp.dragonfly-5.9-x86_64-2.7/layer0/Texture.o build/temp.dragonfly-5.9-x86_64-2.7/layer0/Tracker.o build/temp.dragonfly-5.9-x86_64-2.7/layer0/Triangle.o build/temp.dragonfly-5.9-x86_64-2.7/layer0/Util.o build/temp.dragonfly-5.9-x86_64-2.7/layer0/Util2.o build/temp.dragonfly-5.9-x86_64-2.7/layer0/Vector.o build/temp.dragonfly-5.9-x86_64-2.7/layer0/Word.o build/temp.dragonfly-5.9-x86_64-2.7/layer0/os_gl.o build/temp.dragonfly-5.9-x86_64-2.7/layer1/Basis.o build/temp.dragonfly-5.9-x86_64-2.7/layer1/ButMode.o build/temp.dragonfly-5.9-x86_64-2.7/layer1/CGO.o build/temp.dragonfly-5.9-x86_64-2.7/layer1/COLLADA.o build/temp.dragonfly-5.9-x86_64-2.7/layer1/Character.o build/temp.dragonfly-5.9-x86_64-2.7/layer1/Color.o build/temp.dragonfly-5.9-x86_64-2.7/layer1/Control.o build/temp.dragonfly-5.9-x86_64-2.7/layer1/Extrude.o build/temp.dragonfly-5.9-x86_64-2.7/layer1/Font.o build/temp.dragonfly-5.9-x86_64-2.7/layer1/FontGLUT.o build/temp.dragonfly-5.9-x86_64-2.7/layer1/FontGLUT8x13.o build/temp.dragonfly-5.9-x86_64-2.7/layer1/FontGLUT9x15.o build/temp.dragonfly-5.9-x86_64-2.7/layer1/FontGLUTHel10.o build/temp.dragonfly-5.9-x86_64-2.7/layer1/FontGLUTHel12.o build/temp.dragonfly-5.9-x86_64-2.7/layer1/FontGLUTHel18.o build/temp.dragonfly-5.9-x86_64-2.7/layer1/FontType.o build/temp.dragonfly-5.9-x86_64-2.7/layer1/Movie.o build/temp.dragonfly-5.9-x86_64-2.7/layer1/Ortho.o build/temp.dragonfly-5.9-x86_64-2.7/layer1/P.o build/temp.dragonfly-5.9-x86_64-2.7/layer1/PConv.o build/temp.dragonfly-5.9-x86_64-2.7/layer1/Pop.o build/temp.dragonfly-5.9-x86_64-2.7/layer1/PyMOLObject.o build/temp.dragonfly-5.9-x86_64-2.7/layer1/Ray.o build/temp.dragonfly-5.9-x86_64-2.7/layer1/Rep.o build/temp.dragonfly-5.9-x86_64-2.7/layer1/Scene.o build/temp.dragonfly-5.9-x86_64-2.7/layer1/ScenePicking.o build/temp.dragonfly-5.9-x86_64-2.7/layer1/SceneRay.o build/temp.dragonfly-5.9-x86_64-2.7/layer1/SceneRender.o build/temp.dragonfly-5.9-x86_64-2.7/layer1/ScrollBar.o build/temp.dragonfly-5.9-x86_64-2.7/layer1/Seq.o build/temp.dragonfly-5.9-x86_64-2.7/layer1/Setting.o build/temp.dragonfly-5.9-x86_64-2.7/layer1/Shaker.o build/temp.dragonfly-5.9-x86_64-2.7/layer1/Symmetry.o build/temp.dragonfly-5.9-x86_64-2.7/layer1/Text.o build/temp.dragonfly-5.9-x86_64-2.7/layer1/TypeFace.o build/temp.dragonfly-5.9-x86_64-2.7/layer1/View.o build/temp.dragonfly-5.9-x86_64-2.7/layer1/Wizard.o build/temp.dragonfly-5.9-x86_64-2.7/layer2/AssemblyHelpers.o build/temp.dragonfly-5.9-x86_64-2.7/layer2/AtomInfo.o build/temp.dragonfly-5.9-x86_64-2.7/layer2/AtomInfoHistory.o build/temp.dragonfly-5.9-x86_64-2.7/layer2/BondTypeHistory.o build/temp.dragonfly-5.9-x86_64-2.7/layer2/CifFile.o build/temp.dragonfly-5.9-x86_64-2.7/layer2/CifMoleculeReader.o build/temp.dragonfly-5.9-x86_64-2.7/layer2/CoordSet.o build/temp.dragonfly-5.9-x86_64-2.7/layer2/DistSet.o build/temp.dragonfly-5.9-x86_64-2.7/layer2/GadgetSet.o build/temp.dragonfly-5.9-x86_64-2.7/layer2/HydrogenAdder.o build/temp.dragonfly-5.9-x86_64-2.7/layer2/MmodTyping.o build/temp.dragonfly-5.9-x86_64-2.7/layer2/MmtfMoleculeReader.o build/temp.dragonfly-5.9-x86_64-2.7/layer2/Mol2Typing.o build/temp.dragonfly-5.9-x86_64-2.7/layer2/MolV3000.o build/temp.dragonfly-5.9-x86_64-2.7/layer2/ObjectAlignment.o build/temp.dragonfly-5.9-x86_64-2.7/layer2/ObjectCGO.o build/temp.dragonfly-5.9-x86_64-2.7/layer2/ObjectCallback.o build/temp.dragonfly-5.9-x86_64-2.7/layer2/ObjectDist.o build/temp.dragonfly-5.9-x86_64-2.7/layer2/ObjectGadget.o build/temp.dragonfly-5.9-x86_64-2.7/layer2/ObjectGadgetRamp.o build/temp.dragonfly-5.9-x86_64-2.7/layer2/ObjectGroup.o build/temp.dragonfly-5.9-x86_64-2.7/layer2/ObjectMap.o build/temp.dragonfly-5.9-x86_64-2.7/layer2/ObjectMesh.o build/temp.dragonfly-5.9-x86_64-2.7/layer2/ObjectMolecule.o build/temp.dragonfly-5.9-x86_64-2.7/layer2/ObjectMolecule2.o build/temp.dragonfly-5.9-x86_64-2.7/layer2/ObjectSlice.o build/temp.dragonfly-5.9-x86_64-2.7/layer2/ObjectSurface.o build/temp.dragonfly-5.9-x86_64-2.7/layer2/ObjectVolume.o build/temp.dragonfly-5.9-x86_64-2.7/layer2/RepAngle.o build/temp.dragonfly-5.9-x86_64-2.7/layer2/RepCartoon.o build/temp.dragonfly-5.9-x86_64-2.7/layer2/RepCylBond.o build/temp.dragonfly-5.9-x86_64-2.7/layer2/RepDihedral.o build/temp.dragonfly-5.9-x86_64-2.7/layer2/RepDistDash.o build/temp.dragonfly-5.9-x86_64-2.7/layer2/RepDistLabel.o build/temp.dragonfly-5.9-x86_64-2.7/layer2/RepDot.o build/temp.dragonfly-5.9-x86_64-2.7/layer2/RepEllipsoid.o build/temp.dragonfly-5.9-x86_64-2.7/layer2/RepLabel.o build/temp.dragonfly-5.9-x86_64-2.7/layer2/RepMesh.o build/temp.dragonfly-5.9-x86_64-2.7/layer2/RepNonbonded.o build/temp.dragonfly-5.9-x86_64-2.7/layer2/RepNonbondedSphere.o build/temp.dragonfly-5.9-x86_64-2.7/layer2/RepRibbon.o build/temp.dragonfly-5.9-x86_64-2.7/layer2/RepSphere.o build/temp.dragonfly-5.9-x86_64-2.7/layer2/RepSphereGenerate.o build/temp.dragonfly-5.9-x86_64-2.7/layer2/RepSphereImmediate.o build/temp.dragonfly-5.9-x86_64-2.7/layer2/RepSurface.o build/temp.dragonfly-5.9-x86_64-2.7/layer2/RepWireBond.o build/temp.dragonfly-5.9-x86_64-2.7/layer2/Sculpt.o build/temp.dragonfly-5.9-x86_64-2.7/layer2/SculptCache.o build/temp.dragonfly-5.9-x86_64-2.7/layer2/SideChainHelper.o build/temp.dragonfly-5.9-x86_64-2.7/layer2/VFont.o build/temp.dragonfly-5.9-x86_64-2.7/layer3/AtomIterators.o build/temp.dragonfly-5.9-x86_64-2.7/layer3/CifDataValueFormatter.o build/temp.dragonfly-5.9-x86_64-2.7/layer3/Editor.o build/temp.dragonfly-5.9-x86_64-2.7/layer3/Executive.o build/temp.dragonfly-5.9-x86_64-2.7/layer3/MaeExportHelpers.o build/temp.dragonfly-5.9-x86_64-2.7/layer3/MoleculeExporter.o build/temp.dragonfly-5.9-x86_64-2.7/layer3/MovieScene.o build/temp.dragonfly-5.9-x86_64-2.7/layer3/PlugIOManager.o build/temp.dragonfly-5.9-x86_64-2.7/layer3/Seeker.o build/temp.dragonfly-5.9-x86_64-2.7/layer3/Selector.o build/temp.dragonfly-5.9-x86_64-2.7/layer4/Cmd.o build/temp.dragonfly-5.9-x86_64-2.7/layer4/Export.o build/temp.dragonfly-5.9-x86_64-2.7/layer4/Menu.o build/temp.dragonfly-5.9-x86_64-2.7/layer4/PopUp.o build/temp.dragonfly-5.9-x86_64-2.7/layer5/PyMOL.o build/temp.dragonfly-5.9-x86_64-2.7/layer5/TestPyMOL.o build/temp.dragonfly-5.9-x86_64-2.7/layer5/main.o build/temp.dragonfly-5.9-x86_64-2.7/modules/cealign/src/ccealignmodule.o build/temp.dragonfly-5.9-x86_64-2.7/ov/src/OVContext.o build/temp.dragonfly-5.9-x86_64-2.7/ov/src/OVHeap.o build/temp.dragonfly-5.9-x86_64-2.7/ov/src/OVHeapArray.o build/temp.dragonfly-5.9-x86_64-2.7/ov/src/OVLexicon.o build/temp.dragonfly-5.9-x86_64-2.7/ov/src/OVOneToAny.o build/temp.dragonfly-5.9-x86_64-2.7/ov/src/OVOneToOne.o build/temp.dragonfly-5.9-x86_64-2.7/ov/src/OVRandom.o build/temp.dragonfly-5.9-x86_64-2.7/ov/src/ov_utility.o -L/usr/local/lib -L/usr/local/lib -lpng -lfreetype -lxml2 -lGL -lGLEW -lexecinfo -lpython2.7 -o build/lib.dragonfly-5.9-x86_64-2.7/pymol/_cmd.so
building 'chempy.champ._champ' extension
creating build/temp.dragonfly-5.9-x86_64-2.7/contrib/champ
cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Icontrib/champ -I/usr/local/include/python2.7 -c contrib/champ/champ.c -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/champ/champ.o
cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Icontrib/champ -I/usr/local/include/python2.7 -c contrib/champ/champ_module.c -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/champ/champ_module.o
cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Icontrib/champ -I/usr/local/include/python2.7 -c contrib/champ/chiral.c -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/champ/chiral.o
cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Icontrib/champ -I/usr/local/include/python2.7 -c contrib/champ/err2.c -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/champ/err2.o
cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Icontrib/champ -I/usr/local/include/python2.7 -c contrib/champ/feedback2.c -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/champ/feedback2.o
cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Icontrib/champ -I/usr/local/include/python2.7 -c contrib/champ/list.c -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/champ/list.o
cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Icontrib/champ -I/usr/local/include/python2.7 -c contrib/champ/sort.c -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/champ/sort.o
cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Icontrib/champ -I/usr/local/include/python2.7 -c contrib/champ/os_memory.c -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/champ/os_memory.o
cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Icontrib/champ -I/usr/local/include/python2.7 -c contrib/champ/strblock.c -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/champ/strblock.o
cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Icontrib/champ -I/usr/local/include/python2.7 -c contrib/champ/vla.c -o build/temp.dragonfly-5.9-x86_64-2.7/contrib/champ/vla.o
contrib/champ/os_memory.c: In function 'OSMemoryZero':
contrib/champ/os_memory.c:55:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
   while(count&&(((int)p)&mask)) {
                  ^
contrib/champ/os_memory.c: In function 'OSMemoryHashAdd':
contrib/champ/os_memory.c:137:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
   hash=(int)rec;
        ^
contrib/champ/os_memory.c: In function 'OSMemoryHashRemove':
contrib/champ/os_memory.c:150:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
   hash=(int)rec;
        ^
cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.9-x86_64-2.7/contrib/champ/champ.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/champ/champ_module.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/champ/chiral.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/champ/err2.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/champ/feedback2.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/champ/list.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/champ/os_memory.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/champ/sort.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/champ/strblock.o build/temp.dragonfly-5.9-x86_64-2.7/contrib/champ/vla.o -L/usr/local/lib -lpython2.7 -o build/lib.dragonfly-5.9-x86_64-2.7/chempy/champ/_champ.so

SUCCEEDED 00:01:49

-------------------------------------------------------------------------------
-- Phase: run-depends
-------------------------------------------------------------------------------

===>   py27-pymol-2.3.0_1 depends on package: py27-msgpack>0 - found
===>   py27-pymol-2.3.0_1 depends on package: py27-Pmw>0 - found
===>   py27-pymol-2.3.0_1 depends on package: py27-numpy>=1.15,1<1.19,1 - found
===>   py27-pymol-2.3.0_1 depends on package: py27-setuptools>0 - found
===>   py27-pymol-2.3.0_1 depends on file: /usr/local/bin/python2.7 - found
===>   py27-pymol-2.3.0_1 depends on package: py27-qt5-core>=5.13.1 - found
===>   py27-pymol-2.3.0_1 depends on package: py27-qt5-gui>=5.13.1 - found
===>   py27-pymol-2.3.0_1 depends on package: py27-qt5-opengl>=5.13.1 - found

SUCCEEDED 00:00:00

-------------------------------------------------------------------------------
-- Phase: stage
-------------------------------------------------------------------------------

===>  Staging for py27-pymol-2.3.0_1
===>   py27-pymol-2.3.0_1 depends on package: py27-msgpack>0 - found
===>   py27-pymol-2.3.0_1 depends on package: py27-Pmw>0 - found
===>   py27-pymol-2.3.0_1 depends on package: py27-numpy>=1.15,1<1.19,1 - found
===>   py27-pymol-2.3.0_1 depends on package: py27-setuptools>0 - found
===>   py27-pymol-2.3.0_1 depends on file: /usr/local/bin/python2.7 - found
===>   py27-pymol-2.3.0_1 depends on package: py27-qt5-core>=5.13.1 - found
===>   py27-pymol-2.3.0_1 depends on package: py27-qt5-gui>=5.13.1 - found
===>   py27-pymol-2.3.0_1 depends on package: py27-qt5-opengl>=5.13.1 - found
===>   Generating temporary packing list
running install
running build
running build_py
running build_ext
running install_lib
creating /construction/science/py-pymol/stage/usr/local/lib/python2.7
creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages
creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy
creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/fragments
copying build/lib.dragonfly-5.9-x86_64-2.7/chempy/fragments/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/fragments
creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/fast
copying build/lib.dragonfly-5.9-x86_64-2.7/chempy/fast/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/fast
creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/champ
copying build/lib.dragonfly-5.9-x86_64-2.7/chempy/champ/_champ.so -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/champ
copying build/lib.dragonfly-5.9-x86_64-2.7/chempy/champ/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/champ
copying build/lib.dragonfly-5.9-x86_64-2.7/chempy/champ/assign.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/champ
copying build/lib.dragonfly-5.9-x86_64-2.7/chempy/champ/amber99.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/champ
copying build/lib.dragonfly-5.9-x86_64-2.7/chempy/champ/formal_charges.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/champ
creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/tinker
copying build/lib.dragonfly-5.9-x86_64-2.7/chempy/tinker/state.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/tinker
copying build/lib.dragonfly-5.9-x86_64-2.7/chempy/tinker/realtime.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/tinker
copying build/lib.dragonfly-5.9-x86_64-2.7/chempy/tinker/amber.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/tinker
copying build/lib.dragonfly-5.9-x86_64-2.7/chempy/tinker/keyword.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/tinker
copying build/lib.dragonfly-5.9-x86_64-2.7/chempy/tinker/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/tinker
creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/mmtf
copying build/lib.dragonfly-5.9-x86_64-2.7/chempy/mmtf/io.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/mmtf
copying build/lib.dragonfly-5.9-x86_64-2.7/chempy/mmtf/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/mmtf
copying build/lib.dragonfly-5.9-x86_64-2.7/chempy/water_amber.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy
copying build/lib.dragonfly-5.9-x86_64-2.7/chempy/cpv.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy
copying build/lib.dragonfly-5.9-x86_64-2.7/chempy/cc1.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy
creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/bmin
copying build/lib.dragonfly-5.9-x86_64-2.7/chempy/bmin/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/bmin
copying build/lib.dragonfly-5.9-x86_64-2.7/chempy/bmin/state.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/bmin
copying build/lib.dragonfly-5.9-x86_64-2.7/chempy/bmin/commands.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/bmin
copying build/lib.dragonfly-5.9-x86_64-2.7/chempy/bmin/realtime.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/bmin
copying build/lib.dragonfly-5.9-x86_64-2.7/chempy/bmin/util.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/bmin
copying build/lib.dragonfly-5.9-x86_64-2.7/chempy/bond_amber.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy
copying build/lib.dragonfly-5.9-x86_64-2.7/chempy/mmd.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy
copying build/lib.dragonfly-5.9-x86_64-2.7/chempy/mass.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy
copying build/lib.dragonfly-5.9-x86_64-2.7/chempy/bond_mmff.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy
copying build/lib.dragonfly-5.9-x86_64-2.7/chempy/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy
copying build/lib.dragonfly-5.9-x86_64-2.7/chempy/solvate.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy
copying build/lib.dragonfly-5.9-x86_64-2.7/chempy/cif.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy
copying build/lib.dragonfly-5.9-x86_64-2.7/chempy/protein_amber99.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy
copying build/lib.dragonfly-5.9-x86_64-2.7/chempy/map.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy
copying build/lib.dragonfly-5.9-x86_64-2.7/chempy/mol2.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy
copying build/lib.dragonfly-5.9-x86_64-2.7/chempy/pkl.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy
copying build/lib.dragonfly-5.9-x86_64-2.7/chempy/neighbor.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy
copying build/lib.dragonfly-5.9-x86_64-2.7/chempy/arc.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy
copying build/lib.dragonfly-5.9-x86_64-2.7/chempy/gms.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy
copying build/lib.dragonfly-5.9-x86_64-2.7/chempy/place.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy
copying build/lib.dragonfly-5.9-x86_64-2.7/chempy/protein.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy
copying build/lib.dragonfly-5.9-x86_64-2.7/chempy/bonds.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy
copying build/lib.dragonfly-5.9-x86_64-2.7/chempy/brick.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy
copying build/lib.dragonfly-5.9-x86_64-2.7/chempy/pdb.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy
copying build/lib.dragonfly-5.9-x86_64-2.7/chempy/mol.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy
copying build/lib.dragonfly-5.9-x86_64-2.7/chempy/lst.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy
copying build/lib.dragonfly-5.9-x86_64-2.7/chempy/dictdb.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy
copying build/lib.dragonfly-5.9-x86_64-2.7/chempy/sdf.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy
copying build/lib.dragonfly-5.9-x86_64-2.7/chempy/mae.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy
copying build/lib.dragonfly-5.9-x86_64-2.7/chempy/cex.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy
copying build/lib.dragonfly-5.9-x86_64-2.7/chempy/io.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy
copying build/lib.dragonfly-5.9-x86_64-2.7/chempy/water_residues.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy
copying build/lib.dragonfly-5.9-x86_64-2.7/chempy/protein_mmff.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy
copying build/lib.dragonfly-5.9-x86_64-2.7/chempy/gamess1.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy
copying build/lib.dragonfly-5.9-x86_64-2.7/chempy/xyz.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy
copying build/lib.dragonfly-5.9-x86_64-2.7/chempy/protein_amber.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy
copying build/lib.dragonfly-5.9-x86_64-2.7/chempy/protein_residues.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy
copying build/lib.dragonfly-5.9-x86_64-2.7/chempy/charge.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy
copying build/lib.dragonfly-5.9-x86_64-2.7/chempy/models.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy
copying build/lib.dragonfly-5.9-x86_64-2.7/chempy/hetatm.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy
creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk
copying build/lib.dragonfly-5.9-x86_64-2.7/pmg_tk/PMGApp.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk
copying build/lib.dragonfly-5.9-x86_64-2.7/pmg_tk/PyMOLMapLoad.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk
creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk/skins
copying build/lib.dragonfly-5.9-x86_64-2.7/pmg_tk/skins/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk/skins
creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk/skins/demo
copying build/lib.dragonfly-5.9-x86_64-2.7/pmg_tk/skins/demo/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk/skins/demo
creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk/skins/normal
copying build/lib.dragonfly-5.9-x86_64-2.7/pmg_tk/skins/normal/ModalWindow.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk/skins/normal
copying build/lib.dragonfly-5.9-x86_64-2.7/pmg_tk/skins/normal/builder.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk/skins/normal
copying build/lib.dragonfly-5.9-x86_64-2.7/pmg_tk/skins/normal/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk/skins/normal
copying build/lib.dragonfly-5.9-x86_64-2.7/pmg_tk/SetEditor.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk
copying build/lib.dragonfly-5.9-x86_64-2.7/pmg_tk/ColorEditor.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk
copying build/lib.dragonfly-5.9-x86_64-2.7/pmg_tk/volume.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk
copying build/lib.dragonfly-5.9-x86_64-2.7/pmg_tk/Setting.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk
creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk/startup
copying build/lib.dragonfly-5.9-x86_64-2.7/pmg_tk/startup/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk/startup
copying build/lib.dragonfly-5.9-x86_64-2.7/pmg_tk/startup/apbs_tools.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk/startup
copying build/lib.dragonfly-5.9-x86_64-2.7/pmg_tk/TextEditor.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk
copying build/lib.dragonfly-5.9-x86_64-2.7/pmg_tk/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk
copying build/lib.dragonfly-5.9-x86_64-2.7/pmg_tk/Demo.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk
creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/_cmd.so -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/colorramping.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/computing.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/lazyio.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/__main__.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/importing.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/editor.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/editing.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/creating.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/querying.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/contrib
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/contrib/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/contrib
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/parser.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/controlling.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/fitting.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/Qt
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/Qt/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/Qt
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/Qt/utils.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/Qt
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/constants.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/diagnosing.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/exporting.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/headering.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/feedingback.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/vfont.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/helping.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/checking.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/_gui.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/gui.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/viewing.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/locking.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/povray.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/xray.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/setting.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/shortcut.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/callback.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/plugins
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/plugins/managergui_qt.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/plugins
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/plugins/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/plugins
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/plugins/installation.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/plugins
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/plugins/legacysupport.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/plugins
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/plugins/repository.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/plugins
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/plugins/managergui.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/plugins
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/pymolhttpd.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/morphing.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/movie.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/selector.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/moving.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/m4x.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/menu.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/keyboard.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/api.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/monitoring.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/selecting.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/internal.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/cmd.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/util.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/stereochemistry
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/stereochemistry/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/stereochemistry
creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/opengl
creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/opengl/gl
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/opengl/gl/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/opengl/gl
creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/opengl/glu
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/opengl/glu/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/opengl/glu
creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/opengl/glut
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/opengl/glut/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/opengl/glut
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/opengl/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/opengl
creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/embed
creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/embed/wxpymol
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/embed/wxpymol/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/embed/wxpymol
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/embed/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/embed
creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/embed/epymol
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/embed/epymol/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/embed/epymol
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/seqalign.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/rpc.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/cgo.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/externing.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/keywords.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/xwin.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/completing.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/wizarding.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/experimenting.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/invocation.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/commanding.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/constants_palette.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/colorprinting.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/parsing.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/preset.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol
creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/wizard/distance.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/wizard/security.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/wizard/message.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/wizard/fedora.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/wizard/dragging.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/wizard/charge.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/wizard/appearance.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/wizard/stereodemo.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/wizard/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/wizard/nucmutagenesis.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/wizard/measurement.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/wizard/annotation.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/wizard/sculpting.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/wizard/mutagenesis.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/wizard/toggle.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/wizard/pseudoatom.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/wizard/renaming.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/wizard/command.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/wizard/demo.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/wizard/box.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/wizard/pair_fit.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/wizard/label.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/wizard/filter.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/wizard/benchmark.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/wizard/density.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol/wizard/cleanup.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard
creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol2
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol2/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol2
copying build/lib.dragonfly-5.9-x86_64-2.7/pymol2/cmd2.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol2
creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt
copying build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt/keymapping.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt
copying build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt/TextEditor.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt
copying build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt/volume.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt
creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/forms
copying build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt/forms/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/forms
copying build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt/forms/save_object.ui -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/forms
copying build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt/forms/movieexport.ui -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/forms
copying build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt/forms/askpartial.ui -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/forms
copying build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt/forms/load_mtz.ui -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/forms
copying build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt/forms/save_molecule.ui -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/forms
copying build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt/forms/pluginmanager.ui -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/forms
copying build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt/forms/load_map.ui -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/forms
copying build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt/forms/render.ui -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/forms
copying build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt/forms/load_traj.ui -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/forms
copying build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt/forms/fetch.ui -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/forms
copying build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt/forms/load_aln.ui -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/forms
copying build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt/forms/props.ui -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/forms
copying build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt/forms/png.ui -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/forms
copying build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt/forms/load_mae.ui -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/forms
copying build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt/forms/pluginitem.ui -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/forms
copying build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt/forms/colors.ui -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/forms
copying build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt/builder.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt
copying build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt/mimic_tk.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt
copying build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt/file_dialogs.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt
copying build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt/pymol_gl_widget.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt
copying build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt
copying build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt/pymol_qt_gui.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt
copying build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt/advanced_settings_gui.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt
copying build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt/properties_dialog.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt
creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/syntax
copying build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt/syntax/pml.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/syntax
copying build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt/syntax/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/syntax
copying build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt/syntax/pmlparser.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/syntax
copying build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt/syntax/python.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/syntax
copying build/lib.dragonfly-5.9-x86_64-2.7/pmg_qt/mimic_pmg_tk.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/fragments/__init__.py to __init__.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/fast/__init__.py to __init__.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/champ/__init__.py to __init__.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/champ/assign.py to assign.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/champ/amber99.py to amber99.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/champ/formal_charges.py to formal_charges.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/tinker/state.py to state.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/tinker/realtime.py to realtime.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/tinker/amber.py to amber.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/tinker/keyword.py to keyword.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/tinker/__init__.py to __init__.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/mmtf/io.py to io.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/mmtf/__init__.py to __init__.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/water_amber.py to water_amber.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/cpv.py to cpv.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/cc1.py to cc1.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/bmin/__init__.py to __init__.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/bmin/state.py to state.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/bmin/commands.py to commands.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/bmin/realtime.py to realtime.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/bmin/util.py to util.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/bond_amber.py to bond_amber.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/mmd.py to mmd.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/mass.py to mass.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/bond_mmff.py to bond_mmff.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/__init__.py to __init__.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/solvate.py to solvate.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/cif.py to cif.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/protein_amber99.py to protein_amber99.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/map.py to map.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/mol2.py to mol2.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/pkl.py to pkl.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/neighbor.py to neighbor.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/arc.py to arc.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/gms.py to gms.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/place.py to place.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/protein.py to protein.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/bonds.py to bonds.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/brick.py to brick.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/pdb.py to pdb.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/mol.py to mol.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/lst.py to lst.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/dictdb.py to dictdb.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/sdf.py to sdf.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/mae.py to mae.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/cex.py to cex.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/io.py to io.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/water_residues.py to water_residues.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/protein_mmff.py to protein_mmff.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/gamess1.py to gamess1.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/xyz.py to xyz.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/protein_amber.py to protein_amber.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/protein_residues.py to protein_residues.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/charge.py to charge.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/models.py to models.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/hetatm.py to hetatm.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk/PMGApp.py to PMGApp.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk/PyMOLMapLoad.py to PyMOLMapLoad.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk/skins/__init__.py to __init__.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk/skins/demo/__init__.py to __init__.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk/skins/normal/ModalWindow.py to ModalWindow.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk/skins/normal/builder.py to builder.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk/skins/normal/__init__.py to __init__.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk/SetEditor.py to SetEditor.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk/ColorEditor.py to ColorEditor.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk/volume.py to volume.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk/Setting.py to Setting.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk/startup/__init__.py to __init__.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk/startup/apbs_tools.py to apbs_tools.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk/TextEditor.py to TextEditor.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk/__init__.py to __init__.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk/Demo.py to Demo.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/colorramping.py to colorramping.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/computing.py to computing.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/lazyio.py to lazyio.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/__main__.py to __main__.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/importing.py to importing.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/editor.py to editor.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/editing.py to editing.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/creating.py to creating.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/querying.py to querying.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/contrib/__init__.py to __init__.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/parser.py to parser.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/controlling.py to controlling.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/fitting.py to fitting.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/Qt/__init__.py to __init__.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/Qt/utils.py to utils.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/constants.py to constants.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/diagnosing.py to diagnosing.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/exporting.py to exporting.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/headering.py to headering.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/feedingback.py to feedingback.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/vfont.py to vfont.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/helping.py to helping.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/checking.py to checking.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/_gui.py to _gui.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/gui.py to gui.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/viewing.py to viewing.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/locking.py to locking.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/povray.py to povray.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/xray.py to xray.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/setting.py to setting.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/shortcut.py to shortcut.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/callback.py to callback.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/plugins/managergui_qt.py to managergui_qt.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/plugins/__init__.py to __init__.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/plugins/installation.py to installation.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/plugins/legacysupport.py to legacysupport.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/plugins/repository.py to repository.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/plugins/managergui.py to managergui.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/pymolhttpd.py to pymolhttpd.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/morphing.py to morphing.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/movie.py to movie.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/selector.py to selector.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/moving.py to moving.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/m4x.py to m4x.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/menu.py to menu.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/keyboard.py to keyboard.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/api.py to api.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/monitoring.py to monitoring.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/selecting.py to selecting.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/__init__.py to __init__.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/internal.py to internal.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/cmd.py to cmd.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/util.py to util.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/stereochemistry/__init__.py to __init__.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/opengl/gl/__init__.py to __init__.pyc
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byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/opengl/glut/__init__.py to __init__.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/opengl/__init__.py to __init__.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/embed/wxpymol/__init__.py to __init__.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/embed/__init__.py to __init__.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/embed/epymol/__init__.py to __init__.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/seqalign.py to seqalign.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/rpc.py to rpc.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/cgo.py to cgo.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/externing.py to externing.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/keywords.py to keywords.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/xwin.py to xwin.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/completing.py to completing.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizarding.py to wizarding.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/experimenting.py to experimenting.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/invocation.py to invocation.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/commanding.py to commanding.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/constants_palette.py to constants_palette.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/colorprinting.py to colorprinting.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/parsing.py to parsing.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/preset.py to preset.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/distance.py to distance.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/security.py to security.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/message.py to message.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/fedora.py to fedora.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/dragging.py to dragging.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/charge.py to charge.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/appearance.py to appearance.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/stereodemo.py to stereodemo.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/__init__.py to __init__.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/nucmutagenesis.py to nucmutagenesis.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/measurement.py to measurement.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/annotation.py to annotation.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/sculpting.py to sculpting.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/mutagenesis.py to mutagenesis.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/toggle.py to toggle.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/pseudoatom.py to pseudoatom.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/renaming.py to renaming.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/command.py to command.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/demo.py to demo.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/box.py to box.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/pair_fit.py to pair_fit.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/label.py to label.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/filter.py to filter.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/benchmark.py to benchmark.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/density.py to density.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/cleanup.py to cleanup.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol2/__init__.py to __init__.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol2/cmd2.py to cmd2.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/keymapping.py to keymapping.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/TextEditor.py to TextEditor.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/volume.py to volume.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/forms/__init__.py to __init__.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/builder.py to builder.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/mimic_tk.py to mimic_tk.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/file_dialogs.py to file_dialogs.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/pymol_gl_widget.py to pymol_gl_widget.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/__init__.py to __init__.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/pymol_qt_gui.py to pymol_qt_gui.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/advanced_settings_gui.py to advanced_settings_gui.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/properties_dialog.py to properties_dialog.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/syntax/pml.py to pml.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/syntax/__init__.py to __init__.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/syntax/pmlparser.py to pmlparser.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/syntax/python.py to python.pyc
byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/mimic_pmg_tk.py to mimic_pmg_tk.pyc
writing byte-compilation script '/tmp/tmp_0xyDw.py'
/usr/local/bin/python2.7 -O /tmp/tmp_0xyDw.py
removing /tmp/tmp_0xyDw.py
running install_egg_info
running egg_info
creating pymol.egg-info
writing pymol.egg-info/PKG-INFO
writing top-level names to pymol.egg-info/top_level.txt
writing dependency_links to pymol.egg-info/dependency_links.txt
writing manifest file 'pymol.egg-info/SOURCES.txt'
reading manifest file 'pymol.egg-info/SOURCES.txt'
writing manifest file 'pymol.egg-info/SOURCES.txt'
Copying pymol.egg-info to /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol-2.3.0-py2.7.egg-info
writing list of installed files to '/construction/science/py-pymol/.PLIST.pymodtmp'
creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/pymol_path
copying LICENSE -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/pymol_path
copying data -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/pymol_path/data
copying test -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/pymol_path/test
copying scripts -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/pymol_path/scripts
copying examples -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/pymol_path/examples
===> Creating unique files: Move MAN files needing SUFFIX
===> Creating unique files: Move files needing SUFFIX
Move: bin/pymol --> bin/pymol-2.7
Link: @bin/pymol --> bin/pymol-2.7
====> Compressing man pages (compress-man)
if [ -d "/construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol-2.3.0-py2.7.egg-info" ]; then  /bin/ls /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol-2.3.0-py2.7.egg-info | while read f; do  echo lib/python2.7/site-packages/pymol-2.3.0-py2.7.egg-info/${f} >> /construction/science/py-pymol/.PLIST.mktmp;  done;  fi;
====> Running Q/A tests (stage-qa)
Error: /usr/local/lib/python2.7/site-packages/chempy/champ/_champ.so is linked to /usr/local/lib/libintl.so.8 from devel/gettext-runtime but it is not declared as a dependency
Warning: you need USES+=gettext-runtime
Error: /usr/local/lib/python2.7/site-packages/pymol/_cmd.so is linked to /usr/local/lib/libexpat.so.1 from textproc/expat2 but it is not declared as a dependency
Warning: you need LIB_DEPENDS+=libexpat.so:textproc/expat2
Error: /usr/local/lib/python2.7/site-packages/pymol/_cmd.so is linked to /usr/local/lib/libxcb-dri3.so.0 from x11/libxcb but it is not declared as a dependency
Warning: you need USE_XORG+=xcb
Error: /usr/local/lib/python2.7/site-packages/pymol/_cmd.so is linked to /usr/local/lib/libxcb-xfixes.so.0 from x11/libxcb but it is not declared as a dependency
Warning: you need USE_XORG+=xcb
Error: /usr/local/lib/python2.7/site-packages/pymol/_cmd.so is linked to /usr/local/lib/libxcb-present.so.0 from x11/libxcb but it is not declared as a dependency
Warning: you need USE_XORG+=xcb
Error: /usr/local/lib/python2.7/site-packages/pymol/_cmd.so is linked to /usr/local/lib/libxcb-sync.so.1 from x11/libxcb but it is not declared as a dependency
Warning: you need USE_XORG+=xcb
Error: /usr/local/lib/python2.7/site-packages/pymol/_cmd.so is linked to /usr/local/lib/libxshmfence.so.1 from x11/libxshmfence but it is not declared as a dependency
Warning: you need LIB_DEPENDS+=libxshmfence.so:x11/libxshmfence
Error: /usr/local/lib/python2.7/site-packages/pymol/_cmd.so is linked to /usr/local/lib/libXext.so.6 from x11/libXext but it is not declared as a dependency
Warning: you need USE_XORG+=xext
Error: /usr/local/lib/python2.7/site-packages/pymol/_cmd.so is linked to /usr/local/lib/libXdamage.so.1 from x11/libXdamage but it is not declared as a dependency
Warning: you need USE_XORG+=xdamage
Error: /usr/local/lib/python2.7/site-packages/pymol/_cmd.so is linked to /usr/local/lib/libXfixes.so.3 from x11/libXfixes but it is not declared as a dependency
Warning: you need USE_XORG+=xfixes
Error: /usr/local/lib/python2.7/site-packages/pymol/_cmd.so is linked to /usr/local/lib/libX11-xcb.so.1 from x11/libX11 but it is not declared as a dependency
Warning: you need USE_XORG+=x11
Error: /usr/local/lib/python2.7/site-packages/pymol/_cmd.so is linked to /usr/local/lib/libX11.so.6 from x11/libX11 but it is not declared as a dependency
Warning: you need USE_XORG+=x11
Error: /usr/local/lib/python2.7/site-packages/pymol/_cmd.so is linked to /usr/local/lib/libxcb.so.1 from x11/libxcb but it is not declared as a dependency
Warning: you need USE_XORG+=xcb
Error: /usr/local/lib/python2.7/site-packages/pymol/_cmd.so is linked to /usr/local/lib/libxcb-glx.so.0 from x11/libxcb but it is not declared as a dependency
Warning: you need USE_XORG+=xcb
Error: /usr/local/lib/python2.7/site-packages/pymol/_cmd.so is linked to /usr/local/lib/libxcb-dri2.so.0 from x11/libxcb but it is not declared as a dependency
Warning: you need USE_XORG+=xcb
Error: /usr/local/lib/python2.7/site-packages/pymol/_cmd.so is linked to /usr/local/lib/libXxf86vm.so.1 from x11/libXxf86vm but it is not declared as a dependency
Warning: you need USE_XORG+=xxf86vm
Error: /usr/local/lib/python2.7/site-packages/pymol/_cmd.so is linked to /usr/local/lib/libdrm.so.2 from graphics/libdrm but it is not declared as a dependency
Warning: you need LIB_DEPENDS+=libdrm.so:graphics/libdrm
Error: /usr/local/lib/python2.7/site-packages/pymol/_cmd.so is linked to /usr/local/lib/libXau.so.6 from x11/libXau but it is not declared as a dependency
Warning: you need USE_XORG+=xau
Error: /usr/local/lib/python2.7/site-packages/pymol/_cmd.so is linked to /usr/local/lib/libXdmcp.so.6 from x11/libXdmcp but it is not declared as a dependency
Warning: you need USE_XORG+=xdmcp
Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks

SUCCEEDED 00:00:13

-------------------------------------------------------------------------------
-- Phase: package
-------------------------------------------------------------------------------

===>  Building package for py27-pymol-2.3.0_1
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SUCCEEDED 00:00:42
TOTAL TIME 00:05:19