------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/metis-5.1.0_8.tgz Message from metis-5.1.0_8: ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Installing /packages/All/indexinfo-0.3.1.tgz Installing /packages/All/gmp-6.1.2_1.tgz Installing /packages/All/mpfr-4.0.2.tgz Installing /packages/All/mpc-1.1.0_2.tgz Installing /packages/All/gettext-runtime-0.20.1.tgz Installing /packages/All/binutils-2.32_1,1.tgz Installing /packages/All/gcc8-8.3.0_3.tgz Message from gcc8-8.3.0_3: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/blas-3.5.0_6.tgz Installing /packages/All/lapack-3.5.0_8.tgz Installing /packages/All/openblas-0.2.20_10,1.tgz Installing /packages/All/suitesparse-5.2.0_4.tgz Installing /packages/All/expat-2.2.6_1.tgz Installing /packages/All/libffi-3.2.1_3.tgz Installing /packages/All/ncurses-6.1.20190525.tgz Installing /packages/All/readline-8.0.0.tgz Installing /packages/All/openssl-1.0.2s,1.tgz Message from openssl-1.0.2s,1: Edit /usr/local/openssl/openssl.cnf to fit your needs. Installing /packages/All/python36-3.6.9.tgz Message from python36-3.6.9: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py36-gdbm databases/py-gdbm@py36 py36-sqlite3 databases/py-sqlite3@py36 py36-tkinter x11-toolkits/py-tkinter@py36 =========================================================================== Installing /packages/All/py36-setuptools-41.0.1.tgz Installing /packages/All/py36-numpy-1.16.4_1,1.tgz Installing /packages/All/hdf-szip-2.1.1.tgz Installing /packages/All/hdf5-1.10.5_2.tgz Installing /packages/All/py36-six-1.12.0.tgz Installing /packages/All/py36-h5py-2.9.0_2.tgz Installing /packages/All/freetype2-2.10.1.tgz Message from freetype2-2.10.1: The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/site/index.html, if documentation was installed). Installing /packages/All/png-1.6.37.tgz Installing /packages/All/fontconfig-2.12.6,1.tgz Running fc-cache to build fontconfig cache... /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory fc-cache: succeeded Installing /packages/All/tcl86-8.6.9_1.tgz Installing /packages/All/py36-cycler-0.10.0.tgz Installing /packages/All/py36-dateutil-2.8.0.tgz Installing /packages/All/py36-pytz-2019.1,1.tgz Installing /packages/All/py36-pyparsing-2.4.1.1.tgz Installing /packages/All/py36-tornado-5.1.1.tgz Installing /packages/All/py36-kiwisolver-1.1.0.tgz Installing /packages/All/libXau-1.0.9.tgz Installing /packages/All/xorgproto-2019.1.tgz Installing /packages/All/libXdmcp-1.1.3.tgz Installing /packages/All/libxml2-2.9.9.tgz Installing /packages/All/libpthread-stubs-0.4.tgz Installing /packages/All/libxcb-1.13.1.tgz Installing /packages/All/libX11-1.6.8,1.tgz Installing /packages/All/libXext-1.3.4,1.tgz Installing /packages/All/libXrender-0.9.10_2.tgz Installing /packages/All/libXft-2.3.2_3.tgz Installing /packages/All/libXScrnSaver-1.2.3_2.tgz Installing /packages/All/tk86-8.6.9_1.tgz Installing /packages/All/py36-tkinter-3.6.9_6.tgz Installing /packages/All/py36-matplotlib-2.2.4_1.tgz Installing /packages/All/py36-yaml-5.1.tgz Installing /packages/All/py36-cython-0.29_1.tgz SUCCEEDED 00:00:20 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- x===> Fetching all distfiles required by py36-phonopy-2.2.0 for building SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- x===> Fetching all distfiles required by py36-phonopy-2.2.0 for building => SHA256 Checksum OK for phonopy-2.2.0.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- x===> Fetching all distfiles required by py36-phonopy-2.2.0 for building ===> Extracting for py36-phonopy-2.2.0 => SHA256 Checksum OK for phonopy-2.2.0.tar.gz. Extracted Memory Use: 29.73M SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- x===> Patching for py36-phonopy-2.2.0 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- x===> Configuring for py36-phonopy-2.2.0 setuptools is used. running config SUCCEEDED 00:00:03 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- x===> Building for py36-phonopy-2.2.0 setuptools is used. running build running build_py creating build creating build/lib.dragonfly-5.7-x86_64-3.6 creating build/lib.dragonfly-5.7-x86_64-3.6/phonopy copying phonopy/api_gruneisen.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy copying phonopy/__init__.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy copying phonopy/api_qha.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy copying phonopy/api_phonopy.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy copying phonopy/units.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy copying phonopy/version.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy copying phonopy/file_IO.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy creating build/lib.dragonfly-5.7-x86_64-3.6/phonopy/cui copying phonopy/cui/phonopy_argparse.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/cui copying phonopy/cui/load.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/cui copying phonopy/cui/show_symmetry.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/cui copying phonopy/cui/load_helper.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/cui copying phonopy/cui/collect_cell_info.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/cui copying phonopy/cui/__init__.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/cui copying phonopy/cui/settings.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/cui creating build/lib.dragonfly-5.7-x86_64-3.6/phonopy/gruneisen copying phonopy/gruneisen/__init__.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/gruneisen copying phonopy/gruneisen/core.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/gruneisen copying phonopy/gruneisen/mesh.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/gruneisen copying phonopy/gruneisen/band_structure.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/gruneisen copying phonopy/gruneisen/thermal_properties.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/gruneisen creating build/lib.dragonfly-5.7-x86_64-3.6/phonopy/harmonic copying phonopy/harmonic/dynmat_to_fc.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/harmonic copying phonopy/harmonic/derivative_dynmat.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/harmonic copying phonopy/harmonic/displacement.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/harmonic copying phonopy/harmonic/__init__.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/harmonic copying phonopy/harmonic/force_constants.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/harmonic copying phonopy/harmonic/dynamical_matrix.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/harmonic copying phonopy/harmonic/forces.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/harmonic creating build/lib.dragonfly-5.7-x86_64-3.6/phonopy/interface copying phonopy/interface/cif.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/interface copying phonopy/interface/alm.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/interface copying phonopy/interface/wien2k.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/interface copying phonopy/interface/siesta.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/interface copying phonopy/interface/turbomole.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/interface copying phonopy/interface/crystal.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/interface copying phonopy/interface/qe.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/interface copying phonopy/interface/phonopy_yaml.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/interface copying phonopy/interface/cp2k.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/interface copying phonopy/interface/vasp.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/interface copying phonopy/interface/dftbp.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/interface copying phonopy/interface/FHIaims.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/interface copying phonopy/interface/__init__.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/interface copying phonopy/interface/abinit.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/interface copying phonopy/interface/elk.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/interface creating build/lib.dragonfly-5.7-x86_64-3.6/phonopy/phonon copying phonopy/phonon/moment.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/phonon copying phonopy/phonon/random_displacements.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/phonon copying phonopy/phonon/degeneracy.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/phonon copying phonopy/phonon/animation.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/phonon copying phonopy/phonon/band_structure.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/phonon copying phonopy/phonon/thermal_displacement.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/phonon copying phonopy/phonon/group_velocity.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/phonon copying phonopy/phonon/tetrahedron_mesh.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/phonon copying phonopy/phonon/thermal_properties.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/phonon copying phonopy/phonon/mesh.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/phonon copying phonopy/phonon/modulation.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/phonon copying phonopy/phonon/dos.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/phonon copying phonopy/phonon/irreps.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/phonon copying phonopy/phonon/__init__.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/phonon copying phonopy/phonon/qpoints.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/phonon creating build/lib.dragonfly-5.7-x86_64-3.6/phonopy/qha copying phonopy/qha/eos.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/qha copying phonopy/qha/electron.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/qha copying phonopy/qha/core.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/qha copying phonopy/qha/__init__.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/qha creating build/lib.dragonfly-5.7-x86_64-3.6/phonopy/spectrum copying phonopy/spectrum/dynamic_structure_factor.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/spectrum copying phonopy/spectrum/__init__.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/spectrum copying phonopy/spectrum/velocity.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/spectrum creating build/lib.dragonfly-5.7-x86_64-3.6/phonopy/structure copying phonopy/structure/grid_points.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/structure copying phonopy/structure/atoms.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/structure copying phonopy/structure/cells.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/structure copying phonopy/structure/__init__.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/structure copying phonopy/structure/symmetry.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/structure copying phonopy/structure/brillouin_zone.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/structure copying phonopy/structure/spglib.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/structure copying phonopy/structure/tetrahedron_method.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/structure creating build/lib.dragonfly-5.7-x86_64-3.6/phonopy/unfolding copying phonopy/unfolding/core.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/unfolding copying phonopy/unfolding/__init__.py -> build/lib.dragonfly-5.7-x86_64-3.6/phonopy/unfolding running build_ext building 'phonopy._phonopy' extension creating build/temp.dragonfly-5.7-x86_64-3.6 creating build/temp.dragonfly-5.7-x86_64-3.6/c creating build/temp.dragonfly-5.7-x86_64-3.6/c/harmonic creating build/temp.dragonfly-5.7-x86_64-3.6/c/spglib creating build/temp.dragonfly-5.7-x86_64-3.6/c/kspclib cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Ic/harmonic_h -Ic/kspclib_h -Ic/spglib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/_phonopy.c -o build/temp.dragonfly-5.7-x86_64-3.6/c/_phonopy.o In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from c/_phonopy.c:40: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Ic/harmonic_h -Ic/kspclib_h -Ic/spglib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/harmonic/dynmat.c -o build/temp.dragonfly-5.7-x86_64-3.6/c/harmonic/dynmat.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Ic/harmonic_h -Ic/kspclib_h -Ic/spglib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/harmonic/derivative_dynmat.c -o build/temp.dragonfly-5.7-x86_64-3.6/c/harmonic/derivative_dynmat.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Ic/harmonic_h -Ic/kspclib_h -Ic/spglib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/spglib/kgrid.c -o build/temp.dragonfly-5.7-x86_64-3.6/c/spglib/kgrid.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Ic/harmonic_h -Ic/kspclib_h -Ic/spglib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/kspclib/tetrahedron_method.c -o build/temp.dragonfly-5.7-x86_64-3.6/c/kspclib/tetrahedron_method.o cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-x86_64-3.6/c/_phonopy.o build/temp.dragonfly-5.7-x86_64-3.6/c/harmonic/dynmat.o build/temp.dragonfly-5.7-x86_64-3.6/c/harmonic/derivative_dynmat.o build/temp.dragonfly-5.7-x86_64-3.6/c/spglib/kgrid.o build/temp.dragonfly-5.7-x86_64-3.6/c/kspclib/tetrahedron_method.o -L/usr/local/lib -lpython3.6m -o build/lib.dragonfly-5.7-x86_64-3.6/phonopy/_phonopy.so building 'phonopy._spglib' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Ic/spglib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/_spglib.c -o build/temp.dragonfly-5.7-x86_64-3.6/c/_spglib.o In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from c/_spglib.c:38: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Ic/spglib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/spglib/arithmetic.c -o build/temp.dragonfly-5.7-x86_64-3.6/c/spglib/arithmetic.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Ic/spglib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/spglib/cell.c -o build/temp.dragonfly-5.7-x86_64-3.6/c/spglib/cell.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Ic/spglib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/spglib/delaunay.c -o build/temp.dragonfly-5.7-x86_64-3.6/c/spglib/delaunay.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Ic/spglib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/spglib/determination.c -o build/temp.dragonfly-5.7-x86_64-3.6/c/spglib/determination.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Ic/spglib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/spglib/hall_symbol.c -o build/temp.dragonfly-5.7-x86_64-3.6/c/spglib/hall_symbol.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Ic/spglib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/spglib/kgrid.c -o build/temp.dragonfly-5.7-x86_64-3.6/c/spglib/kgrid.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Ic/spglib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/spglib/kpoint.c -o build/temp.dragonfly-5.7-x86_64-3.6/c/spglib/kpoint.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Ic/spglib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/spglib/mathfunc.c -o build/temp.dragonfly-5.7-x86_64-3.6/c/spglib/mathfunc.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Ic/spglib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/spglib/niggli.c -o build/temp.dragonfly-5.7-x86_64-3.6/c/spglib/niggli.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Ic/spglib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/spglib/overlap.c -o build/temp.dragonfly-5.7-x86_64-3.6/c/spglib/overlap.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Ic/spglib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/spglib/pointgroup.c -o build/temp.dragonfly-5.7-x86_64-3.6/c/spglib/pointgroup.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Ic/spglib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/spglib/primitive.c -o build/temp.dragonfly-5.7-x86_64-3.6/c/spglib/primitive.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Ic/spglib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/spglib/refinement.c -o build/temp.dragonfly-5.7-x86_64-3.6/c/spglib/refinement.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Ic/spglib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/spglib/sitesym_database.c -o build/temp.dragonfly-5.7-x86_64-3.6/c/spglib/sitesym_database.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Ic/spglib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/spglib/site_symmetry.c -o build/temp.dragonfly-5.7-x86_64-3.6/c/spglib/site_symmetry.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Ic/spglib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/spglib/spacegroup.c -o build/temp.dragonfly-5.7-x86_64-3.6/c/spglib/spacegroup.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Ic/spglib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/spglib/spg_database.c -o build/temp.dragonfly-5.7-x86_64-3.6/c/spglib/spg_database.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Ic/spglib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/spglib/spglib.c -o build/temp.dragonfly-5.7-x86_64-3.6/c/spglib/spglib.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Ic/spglib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/spglib/spin.c -o build/temp.dragonfly-5.7-x86_64-3.6/c/spglib/spin.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Ic/spglib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/spglib/symmetry.c -o build/temp.dragonfly-5.7-x86_64-3.6/c/spglib/symmetry.o cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-x86_64-3.6/c/_spglib.o build/temp.dragonfly-5.7-x86_64-3.6/c/spglib/arithmetic.o build/temp.dragonfly-5.7-x86_64-3.6/c/spglib/cell.o build/temp.dragonfly-5.7-x86_64-3.6/c/spglib/delaunay.o build/temp.dragonfly-5.7-x86_64-3.6/c/spglib/determination.o build/temp.dragonfly-5.7-x86_64-3.6/c/spglib/hall_symbol.o build/temp.dragonfly-5.7-x86_64-3.6/c/spglib/kgrid.o build/temp.dragonfly-5.7-x86_64-3.6/c/spglib/kpoint.o build/temp.dragonfly-5.7-x86_64-3.6/c/spglib/mathfunc.o build/temp.dragonfly-5.7-x86_64-3.6/c/spglib/niggli.o build/temp.dragonfly-5.7-x86_64-3.6/c/spglib/overlap.o build/temp.dragonfly-5.7-x86_64-3.6/c/spglib/pointgroup.o build/temp.dragonfly-5.7-x86_64-3.6/c/spglib/primitive.o build/temp.dragonfly-5.7-x86_64-3.6/c/spglib/refinement.o build/temp.dragonfly-5.7-x86_64-3.6/c/spglib/sitesym_database.o build/temp.dragonfly-5.7-x86_64-3.6/c/spglib/site_symmetry.o build/temp.dragonfly-5.7-x86_64-3.6/c/spglib/spacegroup.o build/temp.dragonfly-5.7-x86_64-3.6/c/spglib/spg_database.o build/temp.dragonfly-5.7-x86_64-3.6/c/spglib/spglib.o build/temp.dragonfly-5.7-x86_64-3.6/c/spglib/spin.o build/temp.dragonfly-5.7-x86_64-3.6/c/spglib/symmetry.o -L/usr/local/lib -lpython3.6m -o build/lib.dragonfly-5.7-x86_64-3.6/phonopy/_spglib.so running build_scripts creating build/scripts-3.6 copying and adjusting scripts/phonopy -> build/scripts-3.6 copying and adjusting scripts/phonopy-qha -> build/scripts-3.6 copying and adjusting scripts/phonopy-FHI-aims -> build/scripts-3.6 copying and adjusting scripts/phonopy-bandplot -> build/scripts-3.6 copying and adjusting scripts/phonopy-vasp-born -> build/scripts-3.6 copying and adjusting scripts/phonopy-vasp-efe -> build/scripts-3.6 copying and adjusting scripts/phonopy-crystal-born -> build/scripts-3.6 copying and adjusting scripts/phonopy-propplot -> build/scripts-3.6 copying and adjusting scripts/phonopy-tdplot -> build/scripts-3.6 copying and adjusting scripts/phonopy-dispmanager -> build/scripts-3.6 copying and adjusting scripts/phonopy-gruneisen -> build/scripts-3.6 copying and adjusting scripts/phonopy-gruneisenplot -> build/scripts-3.6 copying and adjusting scripts/phonopy-pdosplot -> build/scripts-3.6 changing mode of build/scripts-3.6/phonopy from 644 to 755 changing mode of build/scripts-3.6/phonopy-qha from 644 to 755 changing mode of build/scripts-3.6/phonopy-FHI-aims from 644 to 755 changing mode of build/scripts-3.6/phonopy-bandplot from 644 to 755 changing mode of build/scripts-3.6/phonopy-vasp-born from 644 to 755 changing mode of build/scripts-3.6/phonopy-vasp-efe from 644 to 755 changing mode of build/scripts-3.6/phonopy-crystal-born from 644 to 755 changing mode of build/scripts-3.6/phonopy-propplot from 644 to 755 changing mode of build/scripts-3.6/phonopy-tdplot from 644 to 755 changing mode of build/scripts-3.6/phonopy-dispmanager from 644 to 755 changing mode of build/scripts-3.6/phonopy-gruneisen from 644 to 755 changing mode of build/scripts-3.6/phonopy-gruneisenplot from 644 to 755 changing mode of build/scripts-3.6/phonopy-pdosplot from 644 to 755 SUCCEEDED 00:00:20 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- x===> Staging for py36-phonopy-2.2.0 ===> Generating temporary packing list setuptools is used. running install running build running build_py running build_ext running build_scripts running install_lib creating /construction/science/py-phonopy/stage/usr/local/lib/python3.6 creating /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages creating /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy creating /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/harmonic copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/harmonic/__init__.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/harmonic copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/harmonic/dynamical_matrix.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/harmonic copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/harmonic/dynmat_to_fc.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/harmonic copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/harmonic/displacement.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/harmonic copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/harmonic/derivative_dynmat.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/harmonic copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/harmonic/forces.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/harmonic copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/harmonic/force_constants.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/harmonic copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/file_IO.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy creating /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/qha copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/qha/__init__.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/qha copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/qha/core.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/qha copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/qha/eos.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/qha copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/qha/electron.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/qha creating /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/interface/elk.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/interface/qe.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/interface/wien2k.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/interface/turbomole.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/interface/__init__.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/interface/cif.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/interface/alm.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/interface/vasp.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/interface/dftbp.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/interface/crystal.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/interface/abinit.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/interface/phonopy_yaml.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/interface/cp2k.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/interface/FHIaims.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/interface/siesta.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface creating /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/unfolding copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/unfolding/__init__.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/unfolding copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/unfolding/core.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/unfolding creating /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/cui copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/cui/load.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/cui copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/cui/settings.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/cui copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/cui/__init__.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/cui copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/cui/collect_cell_info.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/cui copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/cui/load_helper.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/cui copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/cui/phonopy_argparse.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/cui copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/cui/show_symmetry.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/cui copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/api_gruneisen.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/version.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy creating /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/gruneisen copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/gruneisen/mesh.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/gruneisen copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/gruneisen/__init__.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/gruneisen copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/gruneisen/thermal_properties.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/gruneisen copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/gruneisen/core.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/gruneisen copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/gruneisen/band_structure.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/gruneisen creating /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/spectrum copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/spectrum/velocity.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/spectrum copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/spectrum/__init__.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/spectrum copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/spectrum/dynamic_structure_factor.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/spectrum copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/units.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/__init__.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/api_qha.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy creating /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/phonon/qpoints.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/phonon/band_structure.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/phonon/modulation.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/phonon/thermal_properties.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/phonon/random_displacements.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/phonon/animation.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/phonon/moment.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/phonon/thermal_displacement.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/phonon/mesh.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/phonon/degeneracy.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/phonon/irreps.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/phonon/tetrahedron_mesh.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/phonon/group_velocity.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/phonon/__init__.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/phonon/dos.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon creating /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/structure copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/structure/tetrahedron_method.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/structure copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/structure/atoms.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/structure copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/structure/brillouin_zone.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/structure copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/structure/symmetry.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/structure copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/structure/spglib.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/structure copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/structure/cells.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/structure copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/structure/__init__.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/structure copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/structure/grid_points.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/structure copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/api_phonopy.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/_phonopy.so -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy copying build/lib.dragonfly-5.7-x86_64-3.6/phonopy/_spglib.so -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/harmonic/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/harmonic/dynamical_matrix.py to dynamical_matrix.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/harmonic/dynmat_to_fc.py to dynmat_to_fc.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/harmonic/displacement.py to displacement.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/harmonic/derivative_dynmat.py to derivative_dynmat.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/harmonic/forces.py to forces.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/harmonic/force_constants.py to force_constants.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/file_IO.py to file_IO.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/qha/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/qha/core.py to core.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/qha/eos.py to eos.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/qha/electron.py to electron.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface/elk.py to elk.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface/qe.py to qe.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface/wien2k.py to wien2k.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface/turbomole.py to turbomole.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface/cif.py to cif.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface/alm.py to alm.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface/vasp.py to vasp.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface/dftbp.py to dftbp.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface/crystal.py to crystal.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface/abinit.py to abinit.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface/phonopy_yaml.py to phonopy_yaml.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface/cp2k.py to cp2k.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface/FHIaims.py to FHIaims.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface/siesta.py to siesta.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/unfolding/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/unfolding/core.py to core.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/cui/load.py to load.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/cui/settings.py to settings.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/cui/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/cui/collect_cell_info.py to collect_cell_info.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/cui/load_helper.py to load_helper.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/cui/phonopy_argparse.py to phonopy_argparse.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/cui/show_symmetry.py to show_symmetry.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/api_gruneisen.py to api_gruneisen.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/version.py to version.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/gruneisen/mesh.py to mesh.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/gruneisen/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/gruneisen/thermal_properties.py to thermal_properties.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/gruneisen/core.py to core.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/gruneisen/band_structure.py to band_structure.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/spectrum/velocity.py to velocity.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/spectrum/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/spectrum/dynamic_structure_factor.py to dynamic_structure_factor.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/units.py to units.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/api_qha.py to api_qha.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon/qpoints.py to qpoints.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon/band_structure.py to band_structure.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon/modulation.py to modulation.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon/thermal_properties.py to thermal_properties.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon/random_displacements.py to random_displacements.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon/animation.py to animation.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon/moment.py to moment.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon/thermal_displacement.py to thermal_displacement.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon/mesh.py to mesh.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon/degeneracy.py to degeneracy.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon/irreps.py to irreps.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon/tetrahedron_mesh.py to tetrahedron_mesh.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon/group_velocity.py to group_velocity.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon/dos.py to dos.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/structure/tetrahedron_method.py to tetrahedron_method.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/structure/atoms.py to atoms.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/structure/brillouin_zone.py to brillouin_zone.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/structure/symmetry.py to symmetry.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/structure/spglib.py to spglib.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/structure/cells.py to cells.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/structure/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/structure/grid_points.py to grid_points.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/api_phonopy.py to api_phonopy.cpython-36.pyc writing byte-compilation script '/tmp/tmp13ynpnag.py' /usr/local/bin/python3.6 /tmp/tmp13ynpnag.py removing /tmp/tmp13ynpnag.py running install_egg_info running egg_info writing phonopy.egg-info/PKG-INFO writing dependency_links to phonopy.egg-info/dependency_links.txt writing requirements to phonopy.egg-info/requires.txt writing top-level names to phonopy.egg-info/top_level.txt reading manifest file 'phonopy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '*.pyc' found under directory 'test' writing manifest file 'phonopy.egg-info/SOURCES.txt' Copying phonopy.egg-info to /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy-2.2.0-py3.6.egg-info running install_scripts copying build/scripts-3.6/phonopy-crystal-born -> /construction/science/py-phonopy/stage/usr/local/bin copying build/scripts-3.6/phonopy-qha -> /construction/science/py-phonopy/stage/usr/local/bin copying build/scripts-3.6/phonopy-tdplot -> /construction/science/py-phonopy/stage/usr/local/bin copying build/scripts-3.6/phonopy-vasp-efe -> /construction/science/py-phonopy/stage/usr/local/bin copying build/scripts-3.6/phonopy-gruneisenplot -> /construction/science/py-phonopy/stage/usr/local/bin copying build/scripts-3.6/phonopy-pdosplot -> /construction/science/py-phonopy/stage/usr/local/bin copying build/scripts-3.6/phonopy-bandplot -> /construction/science/py-phonopy/stage/usr/local/bin copying build/scripts-3.6/phonopy-FHI-aims -> /construction/science/py-phonopy/stage/usr/local/bin copying build/scripts-3.6/phonopy-gruneisen -> /construction/science/py-phonopy/stage/usr/local/bin copying build/scripts-3.6/phonopy-vasp-born -> /construction/science/py-phonopy/stage/usr/local/bin copying build/scripts-3.6/phonopy -> /construction/science/py-phonopy/stage/usr/local/bin copying build/scripts-3.6/phonopy-dispmanager -> /construction/science/py-phonopy/stage/usr/local/bin copying build/scripts-3.6/phonopy-propplot -> /construction/science/py-phonopy/stage/usr/local/bin changing mode of /construction/science/py-phonopy/stage/usr/local/bin/phonopy-crystal-born to 755 changing mode of /construction/science/py-phonopy/stage/usr/local/bin/phonopy-qha to 755 changing mode of /construction/science/py-phonopy/stage/usr/local/bin/phonopy-tdplot to 755 changing mode of /construction/science/py-phonopy/stage/usr/local/bin/phonopy-vasp-efe to 755 changing mode of /construction/science/py-phonopy/stage/usr/local/bin/phonopy-gruneisenplot to 755 changing mode of /construction/science/py-phonopy/stage/usr/local/bin/phonopy-pdosplot to 755 changing mode of /construction/science/py-phonopy/stage/usr/local/bin/phonopy-bandplot to 755 changing mode of /construction/science/py-phonopy/stage/usr/local/bin/phonopy-FHI-aims to 755 changing mode of /construction/science/py-phonopy/stage/usr/local/bin/phonopy-gruneisen to 755 changing mode of /construction/science/py-phonopy/stage/usr/local/bin/phonopy-vasp-born to 755 changing mode of /construction/science/py-phonopy/stage/usr/local/bin/phonopy to 755 changing mode of /construction/science/py-phonopy/stage/usr/local/bin/phonopy-dispmanager to 755 changing mode of /construction/science/py-phonopy/stage/usr/local/bin/phonopy-propplot to 755 writing list of installed files to '/construction/science/py-phonopy/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Error: /usr/local/lib/python3.6/site-packages/phonopy/_phonopy.so is linked to /usr/local/lib/libintl.so.8 from devel/gettext-runtime but it is not declared as a dependency Warning: you need USES+=gettext-runtime Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:09 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- x====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- x===> Building package for py36-phonopy-2.2.0 file sizes/checksums [239]: 0% file sizes/checksums [239]: 41% file sizes/checksums [239]: 83% file sizes/checksums [239]: 100% packing files [239]: 0% packing files [239]: 41% packing files [239]: 83% packing files [239]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:00 TOTAL TIME 00:00:56