------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/metis-5.1.0_8.tgz Message from metis-5.1.0_8: ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Installing /packages/All/indexinfo-0.3.1.tgz Installing /packages/All/gmp-6.1.2_1.tgz Installing /packages/All/mpfr-4.0.2.tgz Installing /packages/All/mpc-1.1.0_2.tgz Installing /packages/All/gettext-runtime-0.20.1.tgz Installing /packages/All/binutils-2.32_1,1.tgz Installing /packages/All/gcc8-8.3.0_3.tgz Message from gcc8-8.3.0_3: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/blas-3.5.0_6.tgz Installing /packages/All/lapack-3.5.0_8.tgz Installing /packages/All/openblas-0.2.20_10,1.tgz Installing /packages/All/suitesparse-5.2.0_4.tgz Installing /packages/All/expat-2.2.6_1.tgz Installing /packages/All/libffi-3.2.1_3.tgz Installing /packages/All/ncurses-6.1.20190525.tgz Installing /packages/All/readline-8.0.0.tgz Installing /packages/All/openssl-1.0.2s,1.tgz Message from openssl-1.0.2s,1: Edit /usr/local/openssl/openssl.cnf to fit your needs. Installing /packages/All/python36-3.6.9.tgz Message from python36-3.6.9: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py36-gdbm databases/py-gdbm@py36 py36-sqlite3 databases/py-sqlite3@py36 py36-tkinter x11-toolkits/py-tkinter@py36 =========================================================================== Installing /packages/All/py36-setuptools-41.0.1.tgz Installing /packages/All/py36-numpy-1.16.4_1,1.tgz Installing /packages/All/hdf-szip-2.1.1.tgz Installing /packages/All/hdf5-1.10.5_2.tgz Installing /packages/All/py36-six-1.12.0.tgz Installing /packages/All/py36-h5py-2.9.0_2.tgz Installing /packages/All/freetype2-2.10.1.tgz Message from freetype2-2.10.1: The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/site/index.html, if documentation was installed). Installing /packages/All/png-1.6.37.tgz Installing /packages/All/fontconfig-2.12.6,1.tgz Running fc-cache to build fontconfig cache... /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory fc-cache: succeeded Installing /packages/All/tcl86-8.6.9_1.tgz Installing /packages/All/py36-cycler-0.10.0.tgz Installing /packages/All/py36-dateutil-2.8.0.tgz Installing /packages/All/py36-pytz-2019.1,1.tgz Installing /packages/All/py36-pyparsing-2.4.1.1.tgz Installing /packages/All/py36-tornado-5.1.1.tgz Installing /packages/All/py36-kiwisolver-1.1.0.tgz Installing /packages/All/libXau-1.0.9.tgz Installing /packages/All/xorgproto-2019.1.tgz Installing /packages/All/libXdmcp-1.1.3.tgz Installing /packages/All/libxml2-2.9.9.tgz Installing /packages/All/libpthread-stubs-0.4.tgz Installing /packages/All/libxcb-1.13.1.tgz Installing /packages/All/libX11-1.6.8,1.tgz Installing /packages/All/libXext-1.3.4,1.tgz Installing /packages/All/libXrender-0.9.10_2.tgz Installing /packages/All/libXft-2.3.2_3.tgz Installing /packages/All/libXScrnSaver-1.2.3_2.tgz Installing /packages/All/tk86-8.6.9_1.tgz Installing /packages/All/py36-tkinter-3.6.9_6.tgz Installing /packages/All/py36-matplotlib-2.2.4_1.tgz Installing /packages/All/py36-yaml-5.1.tgz Installing /packages/All/py36-phonopy-2.2.0.tgz Installing /packages/All/lapacke-3.5.0_8.tgz Installing /packages/All/py36-cython-0.29_1.tgz SUCCEEDED 00:00:15 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- x===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Depends on expiring devel/openmp. It is scheduled to be removed on or after 2019-12-31. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- x===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Depends on expiring devel/openmp. It is scheduled to be removed on or after 2019-12-31. ===> Fetching all distfiles required by py36-phono3py-1.13.3.27_3 for building SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- x===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Depends on expiring devel/openmp. It is scheduled to be removed on or after 2019-12-31. ===> Fetching all distfiles required by py36-phono3py-1.13.3.27_3 for building => SHA256 Checksum OK for phono3py-1.13.3.27.tar.gz. SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- x===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Depends on expiring devel/openmp. It is scheduled to be removed on or after 2019-12-31. ===> Fetching all distfiles required by py36-phono3py-1.13.3.27_3 for building ===> Extracting for py36-phono3py-1.13.3.27_3 => SHA256 Checksum OK for phono3py-1.13.3.27.tar.gz. Extracted Memory Use: 19.68M SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- x===> Patching for py36-phono3py-1.13.3.27_3 SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- x===> Configuring for py36-phono3py-1.13.3.27_3 setuptools is used. running config SUCCEEDED 00:00:02 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- x===> Building for py36-phono3py-1.13.3.27_3 setuptools is used. running build running build_py creating build creating build/lib.dragonfly-5.7-x86_64-3.6 creating build/lib.dragonfly-5.7-x86_64-3.6/phono3py copying phono3py/version.py -> build/lib.dragonfly-5.7-x86_64-3.6/phono3py copying phono3py/file_IO.py -> build/lib.dragonfly-5.7-x86_64-3.6/phono3py copying phono3py/__init__.py -> build/lib.dragonfly-5.7-x86_64-3.6/phono3py creating build/lib.dragonfly-5.7-x86_64-3.6/phono3py/cui copying phono3py/cui/phono3py_yaml.py -> build/lib.dragonfly-5.7-x86_64-3.6/phono3py/cui copying phono3py/cui/create_force_constants.py -> build/lib.dragonfly-5.7-x86_64-3.6/phono3py/cui copying phono3py/cui/create_supercells.py -> build/lib.dragonfly-5.7-x86_64-3.6/phono3py/cui copying phono3py/cui/show_log.py -> build/lib.dragonfly-5.7-x86_64-3.6/phono3py/cui copying phono3py/cui/triplets_info.py -> build/lib.dragonfly-5.7-x86_64-3.6/phono3py/cui copying phono3py/cui/translate_settings.py -> build/lib.dragonfly-5.7-x86_64-3.6/phono3py/cui copying phono3py/cui/__init__.py -> build/lib.dragonfly-5.7-x86_64-3.6/phono3py/cui copying phono3py/cui/settings.py -> build/lib.dragonfly-5.7-x86_64-3.6/phono3py/cui copying phono3py/cui/phono3py_argparse.py -> build/lib.dragonfly-5.7-x86_64-3.6/phono3py/cui creating build/lib.dragonfly-5.7-x86_64-3.6/phono3py/other copying phono3py/other/isotope.py -> build/lib.dragonfly-5.7-x86_64-3.6/phono3py/other copying phono3py/other/alm_wrapper.py -> build/lib.dragonfly-5.7-x86_64-3.6/phono3py/other copying phono3py/other/__init__.py -> build/lib.dragonfly-5.7-x86_64-3.6/phono3py/other creating build/lib.dragonfly-5.7-x86_64-3.6/phono3py/phonon copying phono3py/phonon/solver.py -> build/lib.dragonfly-5.7-x86_64-3.6/phono3py/phonon copying phono3py/phonon/__init__.py -> build/lib.dragonfly-5.7-x86_64-3.6/phono3py/phonon creating build/lib.dragonfly-5.7-x86_64-3.6/phono3py/phonon3 copying phono3py/phonon3/fc3.py -> build/lib.dragonfly-5.7-x86_64-3.6/phono3py/phonon3 copying phono3py/phonon3/conductivity.py -> build/lib.dragonfly-5.7-x86_64-3.6/phono3py/phonon3 copying phono3py/phonon3/conductivity_RTA.py -> build/lib.dragonfly-5.7-x86_64-3.6/phono3py/phonon3 copying phono3py/phonon3/triplets.py -> build/lib.dragonfly-5.7-x86_64-3.6/phono3py/phonon3 copying phono3py/phonon3/collision_matrix.py -> build/lib.dragonfly-5.7-x86_64-3.6/phono3py/phonon3 copying phono3py/phonon3/imag_self_energy.py -> build/lib.dragonfly-5.7-x86_64-3.6/phono3py/phonon3 copying phono3py/phonon3/gruneisen.py -> build/lib.dragonfly-5.7-x86_64-3.6/phono3py/phonon3 copying phono3py/phonon3/reciprocal_to_normal.py -> build/lib.dragonfly-5.7-x86_64-3.6/phono3py/phonon3 copying phono3py/phonon3/interaction.py -> build/lib.dragonfly-5.7-x86_64-3.6/phono3py/phonon3 copying phono3py/phonon3/real_to_reciprocal.py -> build/lib.dragonfly-5.7-x86_64-3.6/phono3py/phonon3 copying phono3py/phonon3/__init__.py -> build/lib.dragonfly-5.7-x86_64-3.6/phono3py/phonon3 copying phono3py/phonon3/joint_dos.py -> build/lib.dragonfly-5.7-x86_64-3.6/phono3py/phonon3 copying phono3py/phonon3/conductivity_LBTE.py -> build/lib.dragonfly-5.7-x86_64-3.6/phono3py/phonon3 copying phono3py/phonon3/displacement_fc3.py -> build/lib.dragonfly-5.7-x86_64-3.6/phono3py/phonon3 copying phono3py/phonon3/frequency_shift.py -> build/lib.dragonfly-5.7-x86_64-3.6/phono3py/phonon3 running build_ext building 'phono3py._lapackepy' extension creating build/temp.dragonfly-5.7-x86_64-3.6 creating build/temp.dragonfly-5.7-x86_64-3.6/c creating build/temp.dragonfly-5.7-x86_64-3.6/c/harmonic cc -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/_lapackepy.c -o build/temp.dragonfly-5.7-x86_64-3.6/c/_lapackepy.o -fopenmp -DMULTITHREADED_BLAS In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from c/_lapackepy.c:38: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/harmonic/dynmat.c -o build/temp.dragonfly-5.7-x86_64-3.6/c/harmonic/dynmat.o -fopenmp -DMULTITHREADED_BLAS cc -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/harmonic/phonon.c -o build/temp.dragonfly-5.7-x86_64-3.6/c/harmonic/phonon.o -fopenmp -DMULTITHREADED_BLAS cc -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/harmonic/phonoc_array.c -o build/temp.dragonfly-5.7-x86_64-3.6/c/harmonic/phonoc_array.o -fopenmp -DMULTITHREADED_BLAS In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from c/harmonic/phonoc_array.c:36: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/harmonic/phonoc_utils.c -o build/temp.dragonfly-5.7-x86_64-3.6/c/harmonic/phonoc_utils.o -fopenmp -DMULTITHREADED_BLAS In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from c/harmonic_h/phonoc_array.h:39, from c/harmonic/phonoc_utils.c:37: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/harmonic/lapack_wrapper.c -o build/temp.dragonfly-5.7-x86_64-3.6/c/harmonic/lapack_wrapper.o -fopenmp -DMULTITHREADED_BLAS cc -shared -L/usr/local/lib -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.dragonfly-5.7-x86_64-3.6/c/_lapackepy.o build/temp.dragonfly-5.7-x86_64-3.6/c/harmonic/dynmat.o build/temp.dragonfly-5.7-x86_64-3.6/c/harmonic/phonon.o build/temp.dragonfly-5.7-x86_64-3.6/c/harmonic/phonoc_array.o build/temp.dragonfly-5.7-x86_64-3.6/c/harmonic/phonoc_utils.o build/temp.dragonfly-5.7-x86_64-3.6/c/harmonic/lapack_wrapper.o -L/usr/local/lib -lpython3.6m -o build/lib.dragonfly-5.7-x86_64-3.6/phono3py/_lapackepy.so -lgomp -lopenblas building 'phono3py._phono3py' extension creating build/temp.dragonfly-5.7-x86_64-3.6/c/anharmonic creating build/temp.dragonfly-5.7-x86_64-3.6/c/anharmonic/phonon3 creating build/temp.dragonfly-5.7-x86_64-3.6/c/anharmonic/other creating build/temp.dragonfly-5.7-x86_64-3.6/c/anharmonic/triplet creating build/temp.dragonfly-5.7-x86_64-3.6/c/spglib creating build/temp.dragonfly-5.7-x86_64-3.6/c/kspclib cc -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/_phono3py.c -o build/temp.dragonfly-5.7-x86_64-3.6/c/_phono3py.o -fopenmp -DMULTITHREADED_BLAS In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from c/_phono3py.c:39: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/harmonic/dynmat.c -o build/temp.dragonfly-5.7-x86_64-3.6/c/harmonic/dynmat.o -fopenmp -DMULTITHREADED_BLAS cc -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/harmonic/phonon.c -o build/temp.dragonfly-5.7-x86_64-3.6/c/harmonic/phonon.o -fopenmp -DMULTITHREADED_BLAS cc -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/harmonic/lapack_wrapper.c -o build/temp.dragonfly-5.7-x86_64-3.6/c/harmonic/lapack_wrapper.o -fopenmp -DMULTITHREADED_BLAS cc -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/harmonic/phonoc_array.c -o build/temp.dragonfly-5.7-x86_64-3.6/c/harmonic/phonoc_array.o -fopenmp -DMULTITHREADED_BLAS In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from c/harmonic/phonoc_array.c:36: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/harmonic/phonoc_utils.c -o build/temp.dragonfly-5.7-x86_64-3.6/c/harmonic/phonoc_utils.o -fopenmp -DMULTITHREADED_BLAS In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from c/harmonic_h/phonoc_array.h:39, from c/harmonic/phonoc_utils.c:37: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/anharmonic/phonon3/fc3.c -o build/temp.dragonfly-5.7-x86_64-3.6/c/anharmonic/phonon3/fc3.o -fopenmp -DMULTITHREADED_BLAS cc -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/anharmonic/phonon3/frequency_shift.c -o build/temp.dragonfly-5.7-x86_64-3.6/c/anharmonic/phonon3/frequency_shift.o -fopenmp -DMULTITHREADED_BLAS In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from c/harmonic_h/phonoc_array.h:39, from c/anharmonic/phonon3/frequency_shift.c:37: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/anharmonic/phonon3/interaction.c -o build/temp.dragonfly-5.7-x86_64-3.6/c/anharmonic/phonon3/interaction.o -fopenmp -DMULTITHREADED_BLAS In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from c/harmonic_h/phonoc_array.h:39, from c/anharmonic/phonon3/interaction.c:37: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/anharmonic/phonon3/real_to_reciprocal.c -o build/temp.dragonfly-5.7-x86_64-3.6/c/anharmonic/phonon3/real_to_reciprocal.o -fopenmp -DMULTITHREADED_BLAS In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from c/harmonic_h/phonoc_array.h:39, from c/anharmonic/phonon3/real_to_reciprocal.c:39: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/anharmonic/phonon3/reciprocal_to_normal.c -o build/temp.dragonfly-5.7-x86_64-3.6/c/anharmonic/phonon3/reciprocal_to_normal.o -fopenmp -DMULTITHREADED_BLAS In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from c/harmonic_h/phonoc_array.h:39, from c/harmonic_h/phonoc_utils.h:38, from c/anharmonic/phonon3/reciprocal_to_normal.c:37: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/anharmonic/phonon3/imag_self_energy_with_g.c -o build/temp.dragonfly-5.7-x86_64-3.6/c/anharmonic/phonon3/imag_self_energy_with_g.o -fopenmp -DMULTITHREADED_BLAS In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from c/harmonic_h/phonoc_array.h:39, from c/anharmonic/phonon3/imag_self_energy_with_g.c:37: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/anharmonic/phonon3/pp_collision.c -o build/temp.dragonfly-5.7-x86_64-3.6/c/anharmonic/phonon3/pp_collision.o -fopenmp -DMULTITHREADED_BLAS In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from c/harmonic_h/phonoc_array.h:39, from c/anharmonic/phonon3/pp_collision.c:37: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/anharmonic/phonon3/collision_matrix.c -o build/temp.dragonfly-5.7-x86_64-3.6/c/anharmonic/phonon3/collision_matrix.o -fopenmp -DMULTITHREADED_BLAS In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from c/harmonic_h/phonoc_array.h:39, from c/anharmonic/phonon3/collision_matrix.c:38: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/anharmonic/other/isotope.c -o build/temp.dragonfly-5.7-x86_64-3.6/c/anharmonic/other/isotope.o -fopenmp -DMULTITHREADED_BLAS In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from c/harmonic_h/phonoc_array.h:39, from c/harmonic_h/phonoc_utils.h:38, from c/anharmonic/other/isotope.c:37: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/anharmonic/triplet/triplet.c -o build/temp.dragonfly-5.7-x86_64-3.6/c/anharmonic/triplet/triplet.o -fopenmp -DMULTITHREADED_BLAS cc -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/anharmonic/triplet/triplet_kpoint.c -o build/temp.dragonfly-5.7-x86_64-3.6/c/anharmonic/triplet/triplet_kpoint.o -fopenmp -DMULTITHREADED_BLAS cc -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/anharmonic/triplet/triplet_iw.c -o build/temp.dragonfly-5.7-x86_64-3.6/c/anharmonic/triplet/triplet_iw.o -fopenmp -DMULTITHREADED_BLAS In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from c/harmonic_h/phonoc_array.h:39, from c/harmonic_h/phonoc_utils.h:38, from c/anharmonic/triplet/triplet_iw.c:36: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/spglib/mathfunc.c -o build/temp.dragonfly-5.7-x86_64-3.6/c/spglib/mathfunc.o -fopenmp -DMULTITHREADED_BLAS cc -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/spglib/kpoint.c -o build/temp.dragonfly-5.7-x86_64-3.6/c/spglib/kpoint.o -fopenmp -DMULTITHREADED_BLAS cc -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/kspclib/kgrid.c -o build/temp.dragonfly-5.7-x86_64-3.6/c/kspclib/kgrid.o -fopenmp -DMULTITHREADED_BLAS cc -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/kspclib/tetrahedron_method.c -o build/temp.dragonfly-5.7-x86_64-3.6/c/kspclib/tetrahedron_method.o -fopenmp -DMULTITHREADED_BLAS cc -shared -L/usr/local/lib -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.dragonfly-5.7-x86_64-3.6/c/_phono3py.o build/temp.dragonfly-5.7-x86_64-3.6/c/harmonic/dynmat.o build/temp.dragonfly-5.7-x86_64-3.6/c/harmonic/phonon.o build/temp.dragonfly-5.7-x86_64-3.6/c/harmonic/lapack_wrapper.o build/temp.dragonfly-5.7-x86_64-3.6/c/harmonic/phonoc_array.o build/temp.dragonfly-5.7-x86_64-3.6/c/harmonic/phonoc_utils.o build/temp.dragonfly-5.7-x86_64-3.6/c/anharmonic/phonon3/fc3.o build/temp.dragonfly-5.7-x86_64-3.6/c/anharmonic/phonon3/frequency_shift.o build/temp.dragonfly-5.7-x86_64-3.6/c/anharmonic/phonon3/interaction.o build/temp.dragonfly-5.7-x86_64-3.6/c/anharmonic/phonon3/real_to_reciprocal.o build/temp.dragonfly-5.7-x86_64-3.6/c/anharmonic/phonon3/reciprocal_to_normal.o build/temp.dragonfly-5.7-x86_64-3.6/c/anharmonic/phonon3/imag_self_energy_with_g.o build/temp.dragonfly-5.7-x86_64-3.6/c/anharmonic/phonon3/pp_collision.o build/temp.dragonfly-5.7-x86_64-3.6/c/anharmonic/phonon3/collision_matrix.o build/temp.dragonfly-5.7-x86_64-3.6/c/anharmonic/other/isotope.o build/temp.dragonfly-5.7-x86_64-3.6/c/anharmonic/triplet/triplet.o build/temp.dragonfly-5.7-x86_64-3.6/c/anharmonic/triplet/triplet_kpoint.o build/temp.dragonfly-5.7-x86_64-3.6/c/anharmonic/triplet/triplet_iw.o build/temp.dragonfly-5.7-x86_64-3.6/c/spglib/mathfunc.o build/temp.dragonfly-5.7-x86_64-3.6/c/spglib/kpoint.o build/temp.dragonfly-5.7-x86_64-3.6/c/kspclib/kgrid.o build/temp.dragonfly-5.7-x86_64-3.6/c/kspclib/tetrahedron_method.o -L/usr/local/lib -lpython3.6m -o build/lib.dragonfly-5.7-x86_64-3.6/phono3py/_phono3py.so -lgomp -lopenblas running build_scripts creating build/scripts-3.6 copying and adjusting scripts/phono3py -> build/scripts-3.6 copying and adjusting scripts/phono3py-kaccum -> build/scripts-3.6 copying and adjusting scripts/phono3py-kdeplot -> build/scripts-3.6 copying and adjusting scripts/phono3py-coleigplot -> build/scripts-3.6 changing mode of build/scripts-3.6/phono3py from 644 to 755 changing mode of build/scripts-3.6/phono3py-kaccum from 644 to 755 changing mode of build/scripts-3.6/phono3py-kdeplot from 644 to 755 changing mode of build/scripts-3.6/phono3py-coleigplot from 644 to 755 SUCCEEDED 00:00:12 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- x===> Staging for py36-phono3py-1.13.3.27_3 ===> Generating temporary packing list setuptools is used. running install running build running build_py running build_ext running build_scripts running install_lib creating /construction/science/py-phono3py/stage/usr/local/lib/python3.6 creating /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages creating /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py copying build/lib.dragonfly-5.7-x86_64-3.6/phono3py/_lapackepy.so -> /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py copying build/lib.dragonfly-5.7-x86_64-3.6/phono3py/_phono3py.so -> /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py creating /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3 copying build/lib.dragonfly-5.7-x86_64-3.6/phono3py/phonon3/fc3.py -> /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3 copying build/lib.dragonfly-5.7-x86_64-3.6/phono3py/phonon3/conductivity.py -> /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3 copying build/lib.dragonfly-5.7-x86_64-3.6/phono3py/phonon3/collision_matrix.py -> /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3 copying build/lib.dragonfly-5.7-x86_64-3.6/phono3py/phonon3/imag_self_energy.py -> /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3 copying build/lib.dragonfly-5.7-x86_64-3.6/phono3py/phonon3/gruneisen.py -> /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3 copying build/lib.dragonfly-5.7-x86_64-3.6/phono3py/phonon3/conductivity_RTA.py -> /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3 copying build/lib.dragonfly-5.7-x86_64-3.6/phono3py/phonon3/triplets.py -> /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3 copying build/lib.dragonfly-5.7-x86_64-3.6/phono3py/phonon3/real_to_reciprocal.py -> /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3 copying build/lib.dragonfly-5.7-x86_64-3.6/phono3py/phonon3/interaction.py -> /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3 copying build/lib.dragonfly-5.7-x86_64-3.6/phono3py/phonon3/reciprocal_to_normal.py -> /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3 copying build/lib.dragonfly-5.7-x86_64-3.6/phono3py/phonon3/conductivity_LBTE.py -> /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3 copying build/lib.dragonfly-5.7-x86_64-3.6/phono3py/phonon3/joint_dos.py -> /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3 copying build/lib.dragonfly-5.7-x86_64-3.6/phono3py/phonon3/displacement_fc3.py -> /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3 copying build/lib.dragonfly-5.7-x86_64-3.6/phono3py/phonon3/frequency_shift.py -> /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3 copying build/lib.dragonfly-5.7-x86_64-3.6/phono3py/phonon3/__init__.py -> /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3 creating /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/cui copying build/lib.dragonfly-5.7-x86_64-3.6/phono3py/cui/translate_settings.py -> /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/cui copying build/lib.dragonfly-5.7-x86_64-3.6/phono3py/cui/create_force_constants.py -> /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/cui copying build/lib.dragonfly-5.7-x86_64-3.6/phono3py/cui/show_log.py -> /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/cui copying build/lib.dragonfly-5.7-x86_64-3.6/phono3py/cui/triplets_info.py -> /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/cui copying build/lib.dragonfly-5.7-x86_64-3.6/phono3py/cui/create_supercells.py -> /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/cui copying build/lib.dragonfly-5.7-x86_64-3.6/phono3py/cui/phono3py_yaml.py -> /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/cui copying build/lib.dragonfly-5.7-x86_64-3.6/phono3py/cui/__init__.py -> /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/cui copying build/lib.dragonfly-5.7-x86_64-3.6/phono3py/cui/phono3py_argparse.py -> /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/cui copying build/lib.dragonfly-5.7-x86_64-3.6/phono3py/cui/settings.py -> /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/cui copying build/lib.dragonfly-5.7-x86_64-3.6/phono3py/__init__.py -> /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py copying build/lib.dragonfly-5.7-x86_64-3.6/phono3py/file_IO.py -> /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py copying build/lib.dragonfly-5.7-x86_64-3.6/phono3py/version.py -> /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py creating /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/other copying build/lib.dragonfly-5.7-x86_64-3.6/phono3py/other/alm_wrapper.py -> /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/other copying build/lib.dragonfly-5.7-x86_64-3.6/phono3py/other/isotope.py -> /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/other copying build/lib.dragonfly-5.7-x86_64-3.6/phono3py/other/__init__.py -> /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/other creating /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon copying build/lib.dragonfly-5.7-x86_64-3.6/phono3py/phonon/solver.py -> /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon copying build/lib.dragonfly-5.7-x86_64-3.6/phono3py/phonon/__init__.py -> /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3/fc3.py to fc3.cpython-36.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3/conductivity.py to conductivity.cpython-36.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3/collision_matrix.py to collision_matrix.cpython-36.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3/imag_self_energy.py to imag_self_energy.cpython-36.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3/gruneisen.py to gruneisen.cpython-36.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3/conductivity_RTA.py to conductivity_RTA.cpython-36.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3/triplets.py to triplets.cpython-36.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3/real_to_reciprocal.py to real_to_reciprocal.cpython-36.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3/interaction.py to interaction.cpython-36.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3/reciprocal_to_normal.py to reciprocal_to_normal.cpython-36.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3/conductivity_LBTE.py to conductivity_LBTE.cpython-36.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3/joint_dos.py to joint_dos.cpython-36.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3/displacement_fc3.py to displacement_fc3.cpython-36.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3/frequency_shift.py to frequency_shift.cpython-36.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon3/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/cui/translate_settings.py to translate_settings.cpython-36.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/cui/create_force_constants.py to create_force_constants.cpython-36.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/cui/show_log.py to show_log.cpython-36.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/cui/triplets_info.py to triplets_info.cpython-36.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/cui/create_supercells.py to create_supercells.cpython-36.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/cui/phono3py_yaml.py to phono3py_yaml.cpython-36.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/cui/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/cui/phono3py_argparse.py to phono3py_argparse.cpython-36.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/cui/settings.py to settings.cpython-36.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/file_IO.py to file_IO.cpython-36.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/version.py to version.cpython-36.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/other/alm_wrapper.py to alm_wrapper.cpython-36.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/other/isotope.py to isotope.cpython-36.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/other/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon/solver.py to solver.cpython-36.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py/phonon/__init__.py to __init__.cpython-36.pyc writing byte-compilation script '/tmp/tmprrjhcidh.py' /usr/local/bin/python3.6 /tmp/tmprrjhcidh.py removing /tmp/tmprrjhcidh.py running install_egg_info running egg_info writing phono3py.egg-info/PKG-INFO writing dependency_links to phono3py.egg-info/dependency_links.txt writing requirements to phono3py.egg-info/requires.txt writing top-level names to phono3py.egg-info/top_level.txt reading manifest file 'phono3py.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'phono3py.egg-info/SOURCES.txt' Copying phono3py.egg-info to /construction/science/py-phono3py/stage/usr/local/lib/python3.6/site-packages/phono3py-1.13.3.27-py3.6.egg-info running install_scripts copying build/scripts-3.6/phono3py-kaccum -> /construction/science/py-phono3py/stage/usr/local/bin copying build/scripts-3.6/phono3py-coleigplot -> /construction/science/py-phono3py/stage/usr/local/bin copying build/scripts-3.6/phono3py-kdeplot -> /construction/science/py-phono3py/stage/usr/local/bin copying build/scripts-3.6/phono3py -> /construction/science/py-phono3py/stage/usr/local/bin changing mode of /construction/science/py-phono3py/stage/usr/local/bin/phono3py-kaccum to 755 changing mode of /construction/science/py-phono3py/stage/usr/local/bin/phono3py-coleigplot to 755 changing mode of /construction/science/py-phono3py/stage/usr/local/bin/phono3py-kdeplot to 755 changing mode of /construction/science/py-phono3py/stage/usr/local/bin/phono3py to 755 writing list of installed files to '/construction/science/py-phono3py/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Error: /usr/local/lib/python3.6/site-packages/phono3py/_lapackepy.so is linked to /usr/local/lib/libintl.so.8 from devel/gettext-runtime but it is not declared as a dependency Warning: you need USES+=gettext-runtime Error: /usr/local/lib/python3.6/site-packages/phono3py/_lapackepy.so is linked to /usr/local/lib/gcc8/libgfortran.so.5 from lang/gcc8 but it is not declared as a dependency Error: /usr/local/lib/python3.6/site-packages/phono3py/_lapackepy.so is linked to /usr/local/lib/gcc8/libquadmath.so.0 from lang/gcc8 but it is not declared as a dependency Error: /usr/local/lib/python3.6/site-packages/phono3py/_lapackepy.so is linked to /usr/local/lib/gcc8/libgcc_s.so.1 from lang/gcc8 but it is not declared as a dependency Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:03 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- x====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- x===> Building package for py36-phono3py-1.13.3.27_3 file sizes/checksums [107]: 0% file sizes/checksums [107]: 93% file sizes/checksums [107]: 100% packing files [107]: 0% packing files [107]: 93% packing files [107]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:00 TOTAL TIME 00:00:36