------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/metis-5.1.0_8.tgz Message from metis-5.1.0_8: ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Installing /packages/All/indexinfo-0.3.1.tgz Installing /packages/All/gmp-6.1.2_1.tgz Installing /packages/All/mpfr-4.0.2.tgz Installing /packages/All/mpc-1.1.0_2.tgz Installing /packages/All/gettext-runtime-0.20.1.tgz Installing /packages/All/binutils-2.32_1,1.tgz Installing /packages/All/gcc8-8.3.0_3.tgz Message from gcc8-8.3.0_3: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/blas-3.5.0_6.tgz Installing /packages/All/lapack-3.5.0_8.tgz Installing /packages/All/openblas-0.2.20_10,1.tgz Installing /packages/All/suitesparse-5.2.0_4.tgz Installing /packages/All/expat-2.2.6_1.tgz Installing /packages/All/libffi-3.2.1_3.tgz Installing /packages/All/ncurses-6.1.20190525.tgz Installing /packages/All/readline-8.0.0.tgz Installing /packages/All/openssl-1.0.2s,1.tgz Message from openssl-1.0.2s,1: Edit /usr/local/openssl/openssl.cnf to fit your needs. Installing /packages/All/python36-3.6.9.tgz Message from python36-3.6.9: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py36-gdbm databases/py-gdbm@py36 py36-sqlite3 databases/py-sqlite3@py36 py36-tkinter x11-toolkits/py-tkinter@py36 =========================================================================== Installing /packages/All/py36-setuptools-41.0.1.tgz Installing /packages/All/py36-numpy-1.16.4_1,1.tgz SUCCEEDED 00:00:11 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- x===> Fetching all distfiles required by py36-gsd-1.7.0 for building SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- x===> Fetching all distfiles required by py36-gsd-1.7.0 for building => SHA256 Checksum OK for gsd-v1.7.0.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- x===> Fetching all distfiles required by py36-gsd-1.7.0 for building ===> Extracting for py36-gsd-1.7.0 => SHA256 Checksum OK for gsd-v1.7.0.tar.gz. Extracted Memory Use: 1.85M SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- x===> Patching for py36-gsd-1.7.0 ===> Applying ports patches for py36-gsd-1.7.0 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- x===> Configuring for py36-gsd-1.7.0 running config SUCCEEDED 00:00:03 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- x===> Building for py36-gsd-1.7.0 running build running build_py creating build creating build/lib.dragonfly-5.7-x86_64-3.6 creating build/lib.dragonfly-5.7-x86_64-3.6/gsd copying gsd/hoomd.py -> build/lib.dragonfly-5.7-x86_64-3.6/gsd copying gsd/__init__.py -> build/lib.dragonfly-5.7-x86_64-3.6/gsd copying gsd/pygsd.py -> build/lib.dragonfly-5.7-x86_64-3.6/gsd running build_ext building 'gsd.fl' extension creating build/temp.dragonfly-5.7-x86_64-3.6 creating build/temp.dragonfly-5.7-x86_64-3.6/gsd cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c gsd/fl3.c -o build/temp.dragonfly-5.7-x86_64-3.6/gsd/fl3.o In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from gsd/fl3.c:616: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c gsd/gsd.c -o build/temp.dragonfly-5.7-x86_64-3.6/gsd/gsd.o cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-x86_64-3.6/gsd/fl3.o build/temp.dragonfly-5.7-x86_64-3.6/gsd/gsd.o -L/usr/local/lib -lpython3.6m -o build/lib.dragonfly-5.7-x86_64-3.6/gsd/fl.so SUCCEEDED 00:00:14 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- x===> Staging for py36-gsd-1.7.0 ===> Generating temporary packing list running install running build running build_py running build_ext running install_lib creating /construction/science/py-gsd/stage/usr/local/lib/python3.6 creating /construction/science/py-gsd/stage/usr/local/lib/python3.6/site-packages creating /construction/science/py-gsd/stage/usr/local/lib/python3.6/site-packages/gsd copying build/lib.dragonfly-5.7-x86_64-3.6/gsd/pygsd.py -> /construction/science/py-gsd/stage/usr/local/lib/python3.6/site-packages/gsd copying build/lib.dragonfly-5.7-x86_64-3.6/gsd/__init__.py -> /construction/science/py-gsd/stage/usr/local/lib/python3.6/site-packages/gsd copying build/lib.dragonfly-5.7-x86_64-3.6/gsd/hoomd.py -> /construction/science/py-gsd/stage/usr/local/lib/python3.6/site-packages/gsd copying build/lib.dragonfly-5.7-x86_64-3.6/gsd/fl.so -> /construction/science/py-gsd/stage/usr/local/lib/python3.6/site-packages/gsd byte-compiling /construction/science/py-gsd/stage/usr/local/lib/python3.6/site-packages/gsd/pygsd.py to pygsd.cpython-36.pyc byte-compiling /construction/science/py-gsd/stage/usr/local/lib/python3.6/site-packages/gsd/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-gsd/stage/usr/local/lib/python3.6/site-packages/gsd/hoomd.py to hoomd.cpython-36.pyc writing byte-compilation script '/tmp/tmpfde7587i.py' /usr/local/bin/python3.6 /tmp/tmpfde7587i.py removing /tmp/tmpfde7587i.py running install_egg_info running egg_info creating gsd.egg-info writing gsd.egg-info/PKG-INFO writing dependency_links to gsd.egg-info/dependency_links.txt writing requirements to gsd.egg-info/requires.txt writing top-level names to gsd.egg-info/top_level.txt writing manifest file 'gsd.egg-info/SOURCES.txt' reading manifest file 'gsd.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'ChangeLog.md' writing manifest file 'gsd.egg-info/SOURCES.txt' Copying gsd.egg-info to /construction/science/py-gsd/stage/usr/local/lib/python3.6/site-packages/gsd-1.7.0-py3.6.egg-info running install_scripts writing list of installed files to '/construction/science/py-gsd/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Error: /usr/local/lib/python3.6/site-packages/gsd/fl.so is linked to /usr/local/lib/libintl.so.8 from devel/gettext-runtime but it is not declared as a dependency Warning: you need USES+=gettext-runtime Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:03 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- x====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- x===> Building package for py36-gsd-1.7.0 file sizes/checksums [15]: 0% file sizes/checksums [15]: 100% packing files [15]: 0% packing files [15]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:00 TOTAL TIME 00:00:35