------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/metis-5.1.0_8.txz Installing /packages/All/tbb-2020.1.txz Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/gmp-6.2.0.txz Installing /packages/All/mpfr-4.0.2.txz Installing /packages/All/mpc-1.1.0_2.txz UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/gettext-runtime-0.20.1.txz Installing /packages/All/binutils-2.33.1_2,1.txz Installing /packages/All/gcc8-8.4.0.txz ===== Message from gcc8-8.4.0: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/openblas-0.3.7_2,1.txz Installing /packages/All/suitesparse-5.4.0_5.txz Installing /packages/All/expat-2.2.8.txz Installing /packages/All/libffi-3.2.1_3.txz Installing /packages/All/ncurses-6.1.20190525.txz Installing /packages/All/readline-8.0.4.txz Installing /packages/All/openssl-1.1.1d,1.txz Installing /packages/All/python27-2.7.17_1.txz ===== Message from python27-2.7.17_1: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter Installing /packages/All/py27-setuptools-44.0.0.txz ===== Message from py27-setuptools-44.0.0: -- Only /usr/local/bin/easy_install-2.7 script has been installed since Python 2.7 is not the default Python version. Installing /packages/All/py27-numpy-1.16.5_4,1.txz Installing /packages/All/py27-cython-0.29.15.txz UNFLAVORED devel/binutils -> use devel/binutils@native SUCCEEDED 00:01:08 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> py27-gsd-1.10.0 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> py27-gsd-1.10.0 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py27-gsd-1.10.0 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> py27-gsd-1.10.0 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py27-gsd-1.10.0 for building => SHA256 Checksum OK for gsd-v1.10.0.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> py27-gsd-1.10.0 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py27-gsd-1.10.0 for building ===> Extracting for py27-gsd-1.10.0 => SHA256 Checksum OK for gsd-v1.10.0.tar.gz. Extracted Memory Use: 0.54M SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for py27-gsd-1.10.0 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> py27-gsd-1.10.0 depends on package: py27-numpy>=1.15,1<1.19,1 - found ===> py27-gsd-1.10.0 depends on executable: cython-2.7 - found ===> py27-gsd-1.10.0 depends on package: py27-setuptools>0 - found ===> py27-gsd-1.10.0 depends on file: /usr/local/bin/python2.7 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> py27-gsd-1.10.0 depends on package: py27-numpy>=1.15,1<1.19,1 - found ===> py27-gsd-1.10.0 depends on executable: cython-2.7 - found ===> py27-gsd-1.10.0 depends on package: py27-setuptools>0 - found ===> py27-gsd-1.10.0 depends on file: /usr/local/bin/python2.7 - found ===> Configuring for py27-gsd-1.10.0 Compiling gsd/fl.pyx because it changed. [1/1] Cythonizing gsd/fl.pyx running config SUCCEEDED 00:00:07 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for py27-gsd-1.10.0 running build running build_py creating build creating build/lib.dragonfly-5.9-x86_64-2.7 creating build/lib.dragonfly-5.9-x86_64-2.7/gsd copying gsd/pygsd.py -> build/lib.dragonfly-5.9-x86_64-2.7/gsd copying gsd/hoomd.py -> build/lib.dragonfly-5.9-x86_64-2.7/gsd copying gsd/__init__.py -> build/lib.dragonfly-5.9-x86_64-2.7/gsd running build_ext building 'gsd.fl' extension creating build/temp.dragonfly-5.9-x86_64-2.7 creating build/temp.dragonfly-5.9-x86_64-2.7/gsd cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I./gsd -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c gsd/fl.c -o build/temp.dragonfly-5.9-x86_64-2.7/gsd/fl.o In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from gsd/fl.c:623: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I./gsd -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c gsd/gsd.c -o build/temp.dragonfly-5.9-x86_64-2.7/gsd/gsd.o cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.9-x86_64-2.7/gsd/fl.o build/temp.dragonfly-5.9-x86_64-2.7/gsd/gsd.o -L/usr/local/lib -lpython2.7 -o build/lib.dragonfly-5.9-x86_64-2.7/gsd/fl.so SUCCEEDED 00:00:20 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> py27-gsd-1.10.0 depends on package: py27-numpy>=1.15,1<1.19,1 - found ===> py27-gsd-1.10.0 depends on package: py27-setuptools>0 - found ===> py27-gsd-1.10.0 depends on file: /usr/local/bin/python2.7 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for py27-gsd-1.10.0 ===> py27-gsd-1.10.0 depends on package: py27-numpy>=1.15,1<1.19,1 - found ===> py27-gsd-1.10.0 depends on package: py27-setuptools>0 - found ===> py27-gsd-1.10.0 depends on file: /usr/local/bin/python2.7 - found ===> Generating temporary packing list running install running build running build_py running build_ext running install_lib creating /construction/science/py-gsd/stage/usr/local/lib/python2.7 creating /construction/science/py-gsd/stage/usr/local/lib/python2.7/site-packages creating /construction/science/py-gsd/stage/usr/local/lib/python2.7/site-packages/gsd copying build/lib.dragonfly-5.9-x86_64-2.7/gsd/pygsd.py -> /construction/science/py-gsd/stage/usr/local/lib/python2.7/site-packages/gsd copying build/lib.dragonfly-5.9-x86_64-2.7/gsd/hoomd.py -> /construction/science/py-gsd/stage/usr/local/lib/python2.7/site-packages/gsd copying build/lib.dragonfly-5.9-x86_64-2.7/gsd/__init__.py -> /construction/science/py-gsd/stage/usr/local/lib/python2.7/site-packages/gsd copying build/lib.dragonfly-5.9-x86_64-2.7/gsd/fl.so -> /construction/science/py-gsd/stage/usr/local/lib/python2.7/site-packages/gsd byte-compiling /construction/science/py-gsd/stage/usr/local/lib/python2.7/site-packages/gsd/pygsd.py to pygsd.pyc byte-compiling /construction/science/py-gsd/stage/usr/local/lib/python2.7/site-packages/gsd/hoomd.py to hoomd.pyc byte-compiling /construction/science/py-gsd/stage/usr/local/lib/python2.7/site-packages/gsd/__init__.py to __init__.pyc writing byte-compilation script '/tmp/tmpHJ24HD.py' /usr/local/bin/python2.7 -O /tmp/tmpHJ24HD.py removing /tmp/tmpHJ24HD.py running install_egg_info running egg_info creating gsd.egg-info writing requirements to gsd.egg-info/requires.txt writing gsd.egg-info/PKG-INFO writing top-level names to gsd.egg-info/top_level.txt writing dependency_links to gsd.egg-info/dependency_links.txt writing manifest file 'gsd.egg-info/SOURCES.txt' reading manifest file 'gsd.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'ChangeLog.md' writing manifest file 'gsd.egg-info/SOURCES.txt' Copying gsd.egg-info to /construction/science/py-gsd/stage/usr/local/lib/python2.7/site-packages/gsd-1.10.0-py2.7.egg-info running install_scripts writing list of installed files to '/construction/science/py-gsd/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: 'lib/python2.7/site-packages/gsd/fl.so' is not stripped consider trying INSTALL_TARGET=install-strip or using ${STRIP_CMD} Error: /usr/local/lib/python2.7/site-packages/gsd/fl.so is linked to /usr/local/lib/libintl.so.8 from devel/gettext-runtime but it is not declared as a dependency Warning: you need USES+=gettext-runtime Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:05 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for py27-gsd-1.10.0 file sizes/checksums [15]: 0% file sizes/checksums [15]: 100% packing files [15]: 0% packing files [15]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:01 TOTAL TIME 00:01:44