------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/expat-2.2.6_1.tgz Installing /packages/All/indexinfo-0.3.1.tgz Installing /packages/All/libffi-3.2.1_3.tgz Installing /packages/All/ncurses-6.1.20190525.tgz Installing /packages/All/readline-8.0.0.tgz Installing /packages/All/gettext-runtime-0.20.1.tgz Installing /packages/All/openssl-1.0.2s,1.tgz Message from openssl-1.0.2s,1: Edit /usr/local/openssl/openssl.cnf to fit your needs. Installing /packages/All/python36-3.6.9.tgz Message from python36-3.6.9: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py36-gdbm databases/py-gdbm@py36 py36-sqlite3 databases/py-sqlite3@py36 py36-tkinter x11-toolkits/py-tkinter@py36 =========================================================================== Installing /packages/All/py36-setuptools-41.0.1.tgz Installing /packages/All/metis-5.1.0_8.tgz Message from metis-5.1.0_8: ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Installing /packages/All/gmp-6.1.2_1.tgz Installing /packages/All/mpfr-4.0.2.tgz Installing /packages/All/mpc-1.1.0_2.tgz Installing /packages/All/binutils-2.32_1,1.tgz Installing /packages/All/gcc8-8.3.0_3.tgz Message from gcc8-8.3.0_3: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/blas-3.5.0_6.tgz Installing /packages/All/lapack-3.5.0_8.tgz Installing /packages/All/openblas-0.2.20_10,1.tgz Installing /packages/All/suitesparse-5.2.0_4.tgz Installing /packages/All/py36-numpy-1.16.4_1,1.tgz Installing /packages/All/freetype2-2.10.1.tgz Message from freetype2-2.10.1: The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/site/index.html, if documentation was installed). Installing /packages/All/jbigkit-2.1_1.tgz Installing /packages/All/jpeg-turbo-2.0.2.tgz Installing /packages/All/tiff-4.0.10_1.tgz Installing /packages/All/lcms2-2.9.tgz Installing /packages/All/png-1.6.37.tgz Installing /packages/All/openjpeg-2.3.1.tgz Installing /packages/All/giflib-5.1.9.tgz Installing /packages/All/webp-1.0.3_1.tgz Installing /packages/All/fontconfig-2.12.6,1.tgz Running fc-cache to build fontconfig cache... /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory fc-cache: succeeded Installing /packages/All/tcl86-8.6.9_1.tgz Installing /packages/All/libXau-1.0.9.tgz Installing /packages/All/xorgproto-2019.1.tgz Installing /packages/All/libXdmcp-1.1.3.tgz Installing /packages/All/libxml2-2.9.9.tgz Installing /packages/All/libpthread-stubs-0.4.tgz Installing /packages/All/libxcb-1.13.1.tgz Installing /packages/All/libX11-1.6.8,1.tgz Installing /packages/All/libXext-1.3.4,1.tgz Installing /packages/All/libXrender-0.9.10_2.tgz Installing /packages/All/libXft-2.3.2_3.tgz Installing /packages/All/libXScrnSaver-1.2.3_2.tgz Installing /packages/All/tk86-8.6.9_1.tgz Installing /packages/All/py36-olefile-0.46.tgz Installing /packages/All/py36-tkinter-3.6.9_6.tgz Installing /packages/All/py36-pillow-6.0.0_2.tgz Installing /packages/All/libfontenc-1.1.4.tgz Installing /packages/All/mkfontscale-1.2.1.tgz Installing /packages/All/adobe-cmaps-20051217_4.tgz Installing /packages/All/py36-reportlab-3.5.21.tgz Installing /packages/All/py36-biopython-1.73_1.tgz Installing /packages/All/libgpg-error-1.36.tgz Installing /packages/All/libgcrypt-1.8.4_1.tgz Installing /packages/All/libxslt-1.1.33.tgz Installing /packages/All/py36-lxml-4.3.4_1.tgz Installing /packages/All/py36-citeproc-py-0.4.0_1.tgz Installing /packages/All/py36-chardet-3.0.4_1.tgz Installing /packages/All/py36-idna-2.8.tgz Installing /packages/All/py36-asn1crypto-0.24.0.tgz Installing /packages/All/py36-pycparser-2.19.tgz Installing /packages/All/py36-cffi-1.12.3.tgz Installing /packages/All/py36-six-1.12.0.tgz Installing /packages/All/py36-cryptography-2.6.1.tgz Installing /packages/All/py36-openssl-19.0.0.tgz Installing /packages/All/py36-pysocks-1.7.0.tgz Installing /packages/All/py36-urllib3-1.22,1.tgz Message from py36-urllib3-1.22,1: Be careful, support of IPv6 is broken with PySocks 1.5.7. Installing /packages/All/py36-certifi-2019.6.16.tgz Installing /packages/All/py36-requests-2.21.0.tgz Installing /packages/All/py36-duecredit-0.7.0_1.tgz Installing /packages/All/py36-GridDataFormats-0.5.0_1.tgz Installing /packages/All/py36-gsd-1.7.0.tgz Installing /packages/All/py36-joblib-0.13.0.tgz Installing /packages/All/py36-cycler-0.10.0.tgz Installing /packages/All/py36-dateutil-2.8.0.tgz Installing /packages/All/py36-pytz-2019.1,1.tgz Installing /packages/All/py36-pyparsing-2.4.1.1.tgz Installing /packages/All/py36-tornado-5.1.1.tgz Installing /packages/All/py36-kiwisolver-1.1.0.tgz Installing /packages/All/py36-matplotlib-2.2.4_1.tgz Installing /packages/All/py36-msgpack-0.6.1.tgz Installing /packages/All/py36-mmtf-python-1.1.2.tgz Installing /packages/All/py36-pip-19.1.1.tgz Message from py36-pip-19.1.1: ============================== !!!! WARNING !!!! ========================== pip MUST ONLY be used: * With the --user flag, OR * To install or manage Python packages in virtual environments Failure to follow this warning can and will result in an inconsistent system-wide Python environment (LOCALBASE/lib/pythonX.Y/site-packages) and cause errors. Avoid using pip as root unless you know what you're doing. ============================== !!!! WARNING !!!! ========================== Installing /packages/All/py36-pbr-3.1.1_1.tgz Installing /packages/All/py36-mock-2.0.0.tgz Installing /packages/All/py36-decorator-4.3.0.tgz Installing /packages/All/libltdl-2.4.6.tgz Installing /packages/All/libgd-2.2.5_1,1.tgz Installing /packages/All/pcre-8.43_2.tgz Installing /packages/All/libiconv-1.14_11.tgz Installing /packages/All/glib-2.56.3_6,1.tgz No schema files found: doing nothing. Installing /packages/All/wayland-1.16.0.tgz Installing /packages/All/pciids-20190725.tgz Installing /packages/All/libpciaccess-0.16.tgz Installing /packages/All/libdrm-2.4.99.tgz Installing /packages/All/libelf-0.8.13_3.tgz Installing /packages/All/libXfixes-5.0.3_2.tgz Installing /packages/All/libXdamage-1.1.5.tgz Installing /packages/All/libXrandr-1.5.2.tgz Installing /packages/All/libxshmfence-1.3.tgz Installing /packages/All/libXxf86vm-1.1.4_3.tgz Installing /packages/All/mesa-libs-18.3.2_1.tgz Installing /packages/All/pixman-0.38.4.tgz Installing /packages/All/cairo-1.16.0,2.tgz Installing /packages/All/graphite2-1.3.13_1.tgz Installing /packages/All/harfbuzz-2.5.3_1.tgz Installing /packages/All/fribidi-0.19.7.tgz Installing /packages/All/font-bh-ttf-1.0.3_4.tgz Installing /packages/All/font-misc-meltho-1.0.3_4.tgz Installing /packages/All/font-misc-ethiopic-1.0.3_4.tgz Installing /packages/All/font-util-1.3.1.tgz Installing /packages/All/encodings-1.0.5,1.tgz Installing /packages/All/dejavu-2.37_1.tgz Message from dejavu-2.37_1: Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. Installing /packages/All/xorg-fonts-truetype-7.7_1.tgz Installing /packages/All/pango-1.42.4_3.tgz Installing /packages/All/libICE-1.0.9_3,1.tgz Installing /packages/All/libSM-1.2.3,1.tgz Installing /packages/All/libXt-1.2.0,1.tgz Installing /packages/All/libXmu-1.1.3,1.tgz Installing /packages/All/libXp-1.0.3_2,1.tgz Installing /packages/All/libXpm-3.5.12_2.tgz Installing /packages/All/libXaw-1.0.13_2,2.tgz Installing /packages/All/graphviz-2.40.1_11.tgz Installing /packages/All/py36-pygraphviz-1.5.tgz Installing /packages/All/py36-scipy-1.2.2_1.tgz Installing /packages/All/py36-scikit-sparse-0.4.4_3.tgz Installing /packages/All/py36-yaml-5.1.tgz Installing /packages/All/py36-networkx-2.1_2.tgz Installing /packages/All/py36-MDAnalysis-0.19.2_2.tgz Installing /packages/All/py36-atomicwrites-1.3.0.tgz Installing /packages/All/py36-attrs-19.1.0.tgz Installing /packages/All/py36-zipp-0.5.1.tgz Installing /packages/All/py36-importlib-metadata-0.18.tgz Installing /packages/All/py36-pluggy-0.12.0.tgz Installing /packages/All/py36-py-1.8.0.tgz Installing /packages/All/py36-wcwidth-0.1.7.tgz Installing /packages/All/py36-more-itertools-7.2.0.tgz Installing /packages/All/py36-pytest-4.5.0.tgz Installing /packages/All/sqlite3-3.29.0.tgz Installing /packages/All/py36-sqlite3-3.6.9_7.tgz Installing /packages/All/py36-hypothesis-4.32.3.tgz Installing /packages/All/py36-psutil-5.6.3.tgz SUCCEEDED 00:00:55 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- x SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- x===> Fetching all distfiles required by py36-MDAnalysisTests-0.19.2_2 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- x===> Fetching all distfiles required by py36-MDAnalysisTests-0.19.2_2 for building => SHA256 Checksum OK for MDAnalysisTests-0.19.2.tar.gz. SUCCEEDED 00:00:02 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- x===> Fetching all distfiles required by py36-MDAnalysisTests-0.19.2_2 for building ===> Extracting for py36-MDAnalysisTests-0.19.2_2 => SHA256 Checksum OK for MDAnalysisTests-0.19.2.tar.gz. Extracted Memory Use: 81.78M SUCCEEDED 00:00:02 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- x===> Patching for py36-MDAnalysisTests-0.19.2_2 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- x===> Configuring for py36-MDAnalysisTests-0.19.2_2 running config SUCCEEDED 00:00:04 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- x===> Building for py36-MDAnalysisTests-0.19.2_2 running build running build_py creating build creating build/lib creating build/lib/MDAnalysisTests copying MDAnalysisTests/dummy.py -> build/lib/MDAnalysisTests copying MDAnalysisTests/datafiles.py -> build/lib/MDAnalysisTests copying MDAnalysisTests/tempdir.py -> build/lib/MDAnalysisTests copying MDAnalysisTests/__init__.py -> build/lib/MDAnalysisTests copying MDAnalysisTests/test_api.py -> build/lib/MDAnalysisTests copying MDAnalysisTests/util.py -> build/lib/MDAnalysisTests creating build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_atom.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_segmentgroup.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_residue.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_topologyattrs.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_group_traj_access.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_topologyobjects.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_requires.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_atomgroup.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_fragments.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_flag_deprecations.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_atomselections.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_index_dtype.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/__init__.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_copying.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_updating_atomgroup.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_segment.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_topology.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_universe.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_groups.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_residuegroup.py -> build/lib/MDAnalysisTests/core creating build/lib/MDAnalysisTests/auxiliary copying MDAnalysisTests/auxiliary/base.py -> build/lib/MDAnalysisTests/auxiliary copying MDAnalysisTests/auxiliary/__init__.py -> build/lib/MDAnalysisTests/auxiliary copying MDAnalysisTests/auxiliary/test_xvg.py -> build/lib/MDAnalysisTests/auxiliary creating build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_topology_str_types.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_mol2.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_xpdb.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_minimal.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_lammpsdata.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_pqr.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_crd.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_dlpoly.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_mmtf.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_topology_base.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/base.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_xyz.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_dms.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_guessers.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_gms.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/__init__.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_hoomdxml.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_tprparser.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_top.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_pdbqt.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_pdb.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_gsd.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_txyz.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_psf.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_gro.py -> build/lib/MDAnalysisTests/topology creating build/lib/MDAnalysisTests/visualization copying MDAnalysisTests/visualization/__init__.py -> build/lib/MDAnalysisTests/visualization copying MDAnalysisTests/visualization/test_streamlines.py -> build/lib/MDAnalysisTests/visualization creating build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_windows.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_mol2.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_writer_registration.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_netcdf.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_gro.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/reference.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_dlpoly.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_pdb.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_txyz.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_null.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_dcd.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_gms.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_memory.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_crd.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_trz.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_timestep_api.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_mmtf.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_gsd.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_pdbqt.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_dms.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_pqr.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_amber_inpcrd.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_trj.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_lammps.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_reader_api.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_chainreader.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_xyz.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/__init__.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/base.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_xdr.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_copying.py -> build/lib/MDAnalysisTests/coordinates creating build/lib/MDAnalysisTests/lib copying MDAnalysisTests/lib/test_nsgrid.py -> build/lib/MDAnalysisTests/lib copying MDAnalysisTests/lib/test_cutil.py -> build/lib/MDAnalysisTests/lib copying MDAnalysisTests/lib/test_util.py -> build/lib/MDAnalysisTests/lib copying MDAnalysisTests/lib/__init__.py -> build/lib/MDAnalysisTests/lib copying MDAnalysisTests/lib/test_distances.py -> build/lib/MDAnalysisTests/lib copying MDAnalysisTests/lib/test_neighborsearch.py -> build/lib/MDAnalysisTests/lib copying MDAnalysisTests/lib/test_pkdtree.py -> build/lib/MDAnalysisTests/lib copying MDAnalysisTests/lib/test_augment.py -> build/lib/MDAnalysisTests/lib creating build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_qcprot.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_datafiles.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_modelling.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/__init__.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_nuclinfo.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_meta.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_failure.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_deprecated.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_duecredit.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_altloc.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_units.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_streamio.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_imports.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_persistence.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_transformations.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_authors.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_selections.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_log.py -> build/lib/MDAnalysisTests/utils creating build/lib/MDAnalysisTests/import copying MDAnalysisTests/import/__init__.py -> build/lib/MDAnalysisTests/import copying MDAnalysisTests/import/fork_called.py -> build/lib/MDAnalysisTests/import copying MDAnalysisTests/import/test_import.py -> build/lib/MDAnalysisTests/import creating build/lib/MDAnalysisTests/formats copying MDAnalysisTests/formats/test_libdcd.py -> build/lib/MDAnalysisTests/formats copying MDAnalysisTests/formats/test_libmdaxdr.py -> build/lib/MDAnalysisTests/formats copying MDAnalysisTests/formats/__init__.py -> build/lib/MDAnalysisTests/formats creating build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/__init__.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_waterdynamics.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_wbridge.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_diffusionmap.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_density.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_persistencelength.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_rdf.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_psa.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_rms.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_encore.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_hbonds.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_align.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_dihedrals.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_distances.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_data.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_lineardensity.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_base.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_hole.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_leaflet.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_helanal.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_nuclinfo.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_rdf_s.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_pca.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_contacts.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_gnm.py -> build/lib/MDAnalysisTests/analysis creating build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_notop_BAD.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/2r9r-1b.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/SiN_tric_namd.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_notop.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/nosegid.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/tip125_tric_C36.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/trz_psf.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_closed_NAMD.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/watdyn.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/namd_cgenff.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/tip125_tric_C36.dcd -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_dims.dcd -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_dims2.dcd -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/watdyn.dcd -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_gbis_tmd-fast1_NAMD.dcd -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/SiN_tric_namd.dcd -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/empty.dcd -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/1hvr.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/pdbqt_querypdb.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/incomplete.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_open.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/5digitResid.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/A6PA6_alpha.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/sameresid_diffresname.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cobrotoxin.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/SINGLECONECT.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/1grm_single.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/xl_serial.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/nmr_neopetrosiamide.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/4E43.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/align.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cobrotoxin_dry_neutral_0.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cryst_then_model.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/conect_parsing.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/unordered_res.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/model_then_cryst.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_closed.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/RANDOM_WALK_TOPO.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/1k5i.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/CONECT2TER.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/nucl_res.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/namd_cgenff.pdb -> build/lib/MDAnalysisTests/data creating build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.0.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_5.0.4.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_5.0.5.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.5.5.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_2016.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.0.7.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.0.5.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/ab42_gmx_4.6.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.5.2.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.0.6.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_2018.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.5.4.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_5.1.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_5.0.2.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.0.2.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.5.3.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/ab42_gmx_4.6.1.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.0.3.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/drew_gmx_4.5.5.double.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.0.4.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.5.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.5.1.tpr -> build/lib/MDAnalysisTests/data/tprs creating build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy.gro -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy.top -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy_2018.mdp -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy.mdp -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/cobrotoxin.tpr -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa.tpr -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/sameresid_diffresname.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/sample_velocity_file.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/two_water_gro_nonames.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/dppc_vesicle_hg.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/two_water_gro_widebox.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/residwrap.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/plength.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/missing_atomname.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/martini_dppc_chol_bilayer.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/residwrap_0base.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/empty_atom.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/make_whole.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/grovels.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/two_water_gro.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/xyz_random_walk.xtc -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cobrotoxin.xtc -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa.xtc -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa.trr -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cobrotoxin.trr -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/legacy_DCD_adk_coords.npy -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa_dihedral_list.npy -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa_GLY_rama.npy -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa_CA_rmsf.npy -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/legacy_DCD_c36_coords.npy -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/legacy_DCD_NAMD_coords.npy -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa_rama.npy -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa_janin.npy -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa_dihedral.npy -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa_LYS_janin.npy -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_open.crd -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/five.xyz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/mini.xyz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/2r9r-1b.xyz -> build/lib/MDAnalysisTests/data creating build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/tz2.truncoct.parm7.bz2 -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/anti_md1.mdcrd.bz2 -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/ache.mdcrd.bz2 -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/capped-ala.mdcrd.bz2 -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/chitosan.prmtop -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/ache.prmtop -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/bala.prmtop -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/capped-ala.prmtop -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/anti.top -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/posfor.top -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/ace_mbondi3.error2.parm7 -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/ace_mbondi3.error1.parm7 -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/ace_mbondi3.parm7 -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/ace_mbondi3.error3.parm7 -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/bala.trj -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/ache.mdcrd -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/bala.ncdf -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/posfor.ncdf -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/tz2.truncoct.nc -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/test.inpcrd -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/1A2C.pqr -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_open.pqr -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/pdbqt_inputpdbqt.pdbqt -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cryst_then_model.pdb.bz2 -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/2r9r-1b.xyz.bz2 -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cobrotoxin_protein_forces.xvg.bz2 -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/bigbox.gro.bz2 -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/model_then_cryst.pdb.bz2 -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/C12x64.xml.bz2 -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/1grm_elNemo_mode7.pdb.bz2 -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/1a28.pdb.gz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/chainIDrepeat.pdb.gz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/5KIH.mmtf.gz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/fullerene.pdb.gz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/1osm.pdb.gz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/model_then_cryst.pdb.gz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/chainIDnewres.pdb.gz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/19hc.pdb.gz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cryst_then_model.pdb.gz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/testENT.ent -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/test.fasta -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/helanal_bending_matrix_AdK_DIMS_H8.dat -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_closed.dms -> build/lib/MDAnalysisTests/data creating build/lib/MDAnalysisTests/data/merge creating build/lib/MDAnalysisTests/data/merge/2zmm copying MDAnalysisTests/data/merge/2zmm/water.pdb -> build/lib/MDAnalysisTests/data/merge/2zmm copying MDAnalysisTests/data/merge/2zmm/ligand.pdb -> build/lib/MDAnalysisTests/data/merge/2zmm copying MDAnalysisTests/data/merge/2zmm/protein.pdb -> build/lib/MDAnalysisTests/data/merge/2zmm copying MDAnalysisTests/data/trzfile.trz -> build/lib/MDAnalysisTests/data creating build/lib/MDAnalysisTests/data/mol2 copying MDAnalysisTests/data/mol2/Molecules.mol2 -> build/lib/MDAnalysisTests/data/mol2 copying MDAnalysisTests/data/mol2/Molecule.mol2 -> build/lib/MDAnalysisTests/data/mol2 copying MDAnalysisTests/data/mol2/zinc_856218.mol2 -> build/lib/MDAnalysisTests/data/mol2 copying MDAnalysisTests/data/mol2/BrokenMolecule.mol2 -> build/lib/MDAnalysisTests/data/mol2 creating build/lib/MDAnalysisTests/data/contacts copying MDAnalysisTests/data/contacts/villin_unfolded.gro.bz2 -> build/lib/MDAnalysisTests/data/contacts copying MDAnalysisTests/data/contacts/villin_folded.gro.bz2 -> build/lib/MDAnalysisTests/data/contacts copying MDAnalysisTests/data/contacts/2F4K_qlist5_remap.dat -> build/lib/MDAnalysisTests/data/contacts creating build/lib/MDAnalysisTests/data/capping copying MDAnalysisTests/data/capping/aaqaa.gro -> build/lib/MDAnalysisTests/data/capping copying MDAnalysisTests/data/capping/maestro_aaqaa_capped.pdb -> build/lib/MDAnalysisTests/data/capping copying MDAnalysisTests/data/capping/ace.pdb -> build/lib/MDAnalysisTests/data/capping copying MDAnalysisTests/data/capping/nma.pdb -> build/lib/MDAnalysisTests/data/capping creating build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/hydrogen-class1.data2 -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/deletedatoms.data -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/wat.lammpstrj.bz2 -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/datatest.data -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/hydrogen-class1.data -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/ifabp_apo_100mM.dcd -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/datatest.trz -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/ifabp_apo_100mM.in -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/ifabp_apo_100mM.data.bz2 -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data2 -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/mini.data -> build/lib/MDAnalysisTests/data/lammps creating build/lib/MDAnalysisTests/data/gms copying MDAnalysisTests/data/gms/symopt.gms -> build/lib/MDAnalysisTests/data/gms copying MDAnalysisTests/data/gms/surf2wat.gms -> build/lib/MDAnalysisTests/data/gms copying MDAnalysisTests/data/gms/c1opt.gms.gz -> build/lib/MDAnalysisTests/data/gms creating build/lib/MDAnalysisTests/data/dlpoly copying MDAnalysisTests/data/dlpoly/CONFIG_order -> build/lib/MDAnalysisTests/data/dlpoly copying MDAnalysisTests/data/dlpoly/CONFIG_minimal -> build/lib/MDAnalysisTests/data/dlpoly copying MDAnalysisTests/data/dlpoly/CONFIG -> build/lib/MDAnalysisTests/data/dlpoly copying MDAnalysisTests/data/dlpoly/HISTORY -> build/lib/MDAnalysisTests/data/dlpoly copying MDAnalysisTests/data/dlpoly/HISTORY_minimal -> build/lib/MDAnalysisTests/data/dlpoly copying MDAnalysisTests/data/dlpoly/HISTORY_order -> build/lib/MDAnalysisTests/data/dlpoly creating build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.gro -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test_topology.pdb -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.xyz.bz2 -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.arc -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.txyz -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.xyz -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.trr -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/README.md -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/new_hexane.arc -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test_incomplete_vel.gro -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.dcd -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.gro.bz2 -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/create_data.py -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.xtc -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/test_lowf.xvg -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/bad_num_col.xvg -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/test.xvg -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/test_highf.xvg -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/173D.mmtf -> build/lib/MDAnalysisTests/data creating build/lib/MDAnalysisTests/data/analysis copying MDAnalysisTests/data/analysis/align_bound.pdb.gz -> build/lib/MDAnalysisTests/data/analysis copying MDAnalysisTests/data/analysis/align_unbound.pdb.gz -> build/lib/MDAnalysisTests/data/analysis copying MDAnalysisTests/data/analysis/YiiP_lipids.xtc -> build/lib/MDAnalysisTests/data/analysis copying MDAnalysisTests/data/analysis/YiiP_lipids.gro.gz -> build/lib/MDAnalysisTests/data/analysis copying MDAnalysisTests/data/example.gsd -> build/lib/MDAnalysisTests/data creating build/lib/MDAnalysisTests/data/windows copying MDAnalysisTests/data/windows/WIN_nmr_neopetrosiamide.pdb -> build/lib/MDAnalysisTests/data/windows copying MDAnalysisTests/data/windows/WIN_wat.lammpstrj -> build/lib/MDAnalysisTests/data/windows copying MDAnalysisTests/data/windows/README.md -> build/lib/MDAnalysisTests/data/windows copying MDAnalysisTests/data/windows/WIN_HISTORY -> build/lib/MDAnalysisTests/data/windows copying MDAnalysisTests/data/windows/WIN_test.arc -> build/lib/MDAnalysisTests/data/windows copying MDAnalysisTests/data/windows/WIN_ache.mdcrd -> build/lib/MDAnalysisTests/data/windows SUCCEEDED 00:00:03 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- x===> Staging for py36-MDAnalysisTests-0.19.2_2 ===> Generating temporary packing list running install running build running build_py running install_lib creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6 creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_closed.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/1a28.pdb.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/residwrap.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/capping copying build/lib/MDAnalysisTests/data/capping/maestro_aaqaa_capped.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/capping copying build/lib/MDAnalysisTests/data/capping/aaqaa.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/capping copying build/lib/MDAnalysisTests/data/capping/ace.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/capping copying build/lib/MDAnalysisTests/data/capping/nma.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/capping copying build/lib/MDAnalysisTests/data/fullerene.pdb.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/nosegid.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/2r9r-1b.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa_dihedral.npy -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/1hvr.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/CONECT2TER.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/trzfile.trz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/example.gsd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/cryst_then_model.pdb.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/nucl_res.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/mol2 copying build/lib/MDAnalysisTests/data/mol2/zinc_856218.mol2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/mol2 copying build/lib/MDAnalysisTests/data/mol2/Molecules.mol2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/mol2 copying build/lib/MDAnalysisTests/data/mol2/Molecule.mol2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/mol2 copying build/lib/MDAnalysisTests/data/mol2/BrokenMolecule.mol2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/mol2 copying build/lib/MDAnalysisTests/data/two_water_gro.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_open.pqr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/5KIH.mmtf.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/empty_atom.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.5.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.5.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.2.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.4.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.5.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_2018.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.4.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/ab42_gmx_4.6.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/ab42_gmx_4.6.1.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.mdp -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy.mdp -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy.top -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.1.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.3.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.2.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.3.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.2.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.7.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.4.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.6.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_5.1.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/drew_gmx_4.5.5.double.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_2016.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/2r9r-1b.xyz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/legacy_DCD_adk_coords.npy -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/model_then_cryst.pdb.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/model_then_cryst.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/xl_serial.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/legacy_DCD_c36_coords.npy -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa.trr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/cryst_then_model.pdb.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/1grm_single.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/test.xvg -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/bigbox.gro.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/watdyn.dcd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/datatest.data -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/datatest.trz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/hydrogen-class1.data -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/ifabp_apo_100mM.data.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/mini.data -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/ifabp_apo_100mM.dcd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/ifabp_apo_100mM.in -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/hydrogen-class1.data2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/deletedatoms.data -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/wat.lammpstrj.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/cobrotoxin.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa_dihedral_list.npy -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/sameresid_diffresname.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/conect_parsing.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/SiN_tric_namd.dcd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/173D.mmtf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/pdbqt_querypdb.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/xyz_random_walk.xtc -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/4E43.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/trz_psf.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/make_whole.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/nmr_neopetrosiamide.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/missing_atomname.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa_janin.npy -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/analysis copying build/lib/MDAnalysisTests/data/analysis/YiiP_lipids.gro.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/analysis copying build/lib/MDAnalysisTests/data/analysis/align_unbound.pdb.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/analysis copying build/lib/MDAnalysisTests/data/analysis/align_bound.pdb.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/analysis copying build/lib/MDAnalysisTests/data/analysis/YiiP_lipids.xtc -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/analysis copying build/lib/MDAnalysisTests/data/cobrotoxin_dry_neutral_0.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/1k5i.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa_CA_rmsf.npy -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/dlpoly copying build/lib/MDAnalysisTests/data/dlpoly/CONFIG -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/dlpoly copying build/lib/MDAnalysisTests/data/dlpoly/HISTORY -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/dlpoly copying build/lib/MDAnalysisTests/data/dlpoly/HISTORY_minimal -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/dlpoly copying build/lib/MDAnalysisTests/data/dlpoly/CONFIG_minimal -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/dlpoly copying build/lib/MDAnalysisTests/data/dlpoly/HISTORY_order -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/dlpoly copying build/lib/MDAnalysisTests/data/dlpoly/CONFIG_order -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/dlpoly creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/gms copying build/lib/MDAnalysisTests/data/gms/symopt.gms -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/gms copying build/lib/MDAnalysisTests/data/gms/c1opt.gms.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/gms copying build/lib/MDAnalysisTests/data/gms/surf2wat.gms -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/gms copying build/lib/MDAnalysisTests/data/adk_closed_NAMD.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_closed.dms -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/test_highf.xvg -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/dppc_vesicle_hg.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/merge creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/merge/2zmm copying build/lib/MDAnalysisTests/data/merge/2zmm/water.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/merge/2zmm copying build/lib/MDAnalysisTests/data/merge/2zmm/protein.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/merge/2zmm copying build/lib/MDAnalysisTests/data/merge/2zmm/ligand.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/merge/2zmm copying build/lib/MDAnalysisTests/data/chainIDnewres.pdb.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/1A2C.pqr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa_GLY_rama.npy -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/five.xyz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/windows copying build/lib/MDAnalysisTests/data/windows/WIN_ache.mdcrd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/windows copying build/lib/MDAnalysisTests/data/windows/README.md -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/windows copying build/lib/MDAnalysisTests/data/windows/WIN_wat.lammpstrj -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/windows copying build/lib/MDAnalysisTests/data/windows/WIN_test.arc -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/windows copying build/lib/MDAnalysisTests/data/windows/WIN_HISTORY -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/windows copying build/lib/MDAnalysisTests/data/windows/WIN_nmr_neopetrosiamide.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/windows copying build/lib/MDAnalysisTests/data/adk_oplsaa_LYS_janin.npy -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa.xtc -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/pdbqt_inputpdbqt.pdbqt -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/2r9r-1b.xyz.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/namd_cgenff.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/watdyn.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/unordered_res.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/incomplete.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/martini_dppc_chol_bilayer.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/grovels.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/5digitResid.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/cobrotoxin.xtc -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/helanal_bending_matrix_AdK_DIMS_H8.dat -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/tip125_tric_C36.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.txyz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.dcd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/README.md -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.xyz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/create_data.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.xtc -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test_topology.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test_incomplete_vel.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.trr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.xyz.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.gro.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/new_hexane.arc -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.arc -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/A6PA6_alpha.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/contacts copying build/lib/MDAnalysisTests/data/contacts/villin_unfolded.gro.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/contacts copying build/lib/MDAnalysisTests/data/contacts/villin_folded.gro.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/contacts copying build/lib/MDAnalysisTests/data/contacts/2F4K_qlist5_remap.dat -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/contacts copying build/lib/MDAnalysisTests/data/cobrotoxin_protein_forces.xvg.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/two_water_gro_widebox.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/plength.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_notop_BAD.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/legacy_DCD_NAMD_coords.npy -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/mini.xyz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/1osm.pdb.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_dims.dcd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/empty.dcd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_notop.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/test_lowf.xvg -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_open.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/anti.top -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/bala.prmtop -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/ache.mdcrd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/tz2.truncoct.nc -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/posfor.top -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/chitosan.prmtop -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/posfor.ncdf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/capped-ala.mdcrd.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/test.inpcrd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/ache.mdcrd.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/anti_md1.mdcrd.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/ace_mbondi3.error2.parm7 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/ache.prmtop -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/ace_mbondi3.error1.parm7 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/ace_mbondi3.parm7 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/ace_mbondi3.error3.parm7 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/tz2.truncoct.parm7.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/bala.trj -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/bala.ncdf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/capped-ala.prmtop -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/19hc.pdb.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/residwrap_0base.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/1grm_elNemo_mode7.pdb.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_gbis_tmd-fast1_NAMD.dcd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/chainIDrepeat.pdb.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/cryst_then_model.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/tip125_tric_C36.dcd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/SINGLECONECT.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_dims2.dcd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/align.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa_rama.npy -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/namd_cgenff.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/sample_velocity_file.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_open.crd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/cobrotoxin.trr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/bad_num_col.xvg -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/SiN_tric_namd.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/test.fasta -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/model_then_cryst.pdb.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/C12x64.xml.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/RANDOM_WALK_TOPO.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/testENT.ent -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/sameresid_diffresname.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/cobrotoxin.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/two_water_gro_nonames.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/formats copying build/lib/MDAnalysisTests/formats/test_libdcd.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/formats copying build/lib/MDAnalysisTests/formats/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/formats copying build/lib/MDAnalysisTests/formats/test_libmdaxdr.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/formats creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/import copying build/lib/MDAnalysisTests/import/test_import.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/import copying build/lib/MDAnalysisTests/import/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/import copying build/lib/MDAnalysisTests/import/fork_called.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/import copying build/lib/MDAnalysisTests/util.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/lib copying build/lib/MDAnalysisTests/lib/test_pkdtree.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/lib copying build/lib/MDAnalysisTests/lib/test_augment.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/lib copying build/lib/MDAnalysisTests/lib/test_cutil.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/lib copying build/lib/MDAnalysisTests/lib/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/lib copying build/lib/MDAnalysisTests/lib/test_util.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/lib copying build/lib/MDAnalysisTests/lib/test_neighborsearch.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/lib copying build/lib/MDAnalysisTests/lib/test_distances.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/lib copying build/lib/MDAnalysisTests/lib/test_nsgrid.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/lib copying build/lib/MDAnalysisTests/dummy.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_pdb.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_psf.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_txyz.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_mol2.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_dms.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_xpdb.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_crd.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_topology_base.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_gms.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/base.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_pdbqt.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_dlpoly.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_topology_str_types.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_lammpsdata.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_mmtf.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_guessers.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_gro.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_tprparser.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_minimal.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_gsd.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_top.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_xyz.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_pqr.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_hoomdxml.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/test_api.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests copying build/lib/MDAnalysisTests/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_rdf.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_rms.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_diffusionmap.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_data.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_leaflet.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_density.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_lineardensity.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_dihedrals.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_encore.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_waterdynamics.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_rdf_s.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_align.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_hole.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_helanal.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_base.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_pca.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_distances.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_nuclinfo.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_psa.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_gnm.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_wbridge.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_hbonds.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_persistencelength.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_contacts.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/tempdir.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_copying.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_universe.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_segment.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_residuegroup.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_updating_atomgroup.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_flag_deprecations.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_atom.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_index_dtype.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_topology.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_segmentgroup.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_group_traj_access.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_topologyattrs.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_atomgroup.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_fragments.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_atomselections.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_residue.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_topologyobjects.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_requires.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_groups.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/auxiliary copying build/lib/MDAnalysisTests/auxiliary/test_xvg.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/auxiliary copying build/lib/MDAnalysisTests/auxiliary/base.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/auxiliary copying build/lib/MDAnalysisTests/auxiliary/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/auxiliary creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_units.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_transformations.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_modelling.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_selections.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_altloc.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_failure.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_authors.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_datafiles.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_persistence.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_deprecated.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_nuclinfo.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_log.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_qcprot.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_streamio.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_duecredit.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_imports.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_meta.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_trz.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_pqr.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_gro.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_dlpoly.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/base.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_windows.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_mol2.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_netcdf.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_null.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_writer_registration.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_lammps.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_dcd.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/reference.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_copying.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_gms.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_mmtf.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_pdbqt.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_xyz.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_crd.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_dms.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_amber_inpcrd.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_pdb.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_xdr.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_memory.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_gsd.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_chainreader.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_txyz.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_reader_api.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_trj.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_timestep_api.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/visualization copying build/lib/MDAnalysisTests/visualization/test_streamlines.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/visualization copying build/lib/MDAnalysisTests/visualization/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/visualization copying build/lib/MDAnalysisTests/datafiles.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/data/coordinates/create_data.py to create_data.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/formats/test_libdcd.py to test_libdcd.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/formats/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/formats/test_libmdaxdr.py to test_libmdaxdr.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/import/test_import.py to test_import.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/import/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/import/fork_called.py to fork_called.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/util.py to util.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/lib/test_pkdtree.py to test_pkdtree.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/lib/test_augment.py to test_augment.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/lib/test_cutil.py to test_cutil.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/lib/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/lib/test_util.py to test_util.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/lib/test_neighborsearch.py to test_neighborsearch.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/lib/test_distances.py to test_distances.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/lib/test_nsgrid.py to test_nsgrid.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/dummy.py to dummy.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology/test_pdb.py to test_pdb.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology/test_psf.py to test_psf.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology/test_txyz.py to test_txyz.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology/test_mol2.py to test_mol2.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology/test_dms.py to test_dms.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology/test_xpdb.py to test_xpdb.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology/test_crd.py to test_crd.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology/test_topology_base.py to test_topology_base.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology/test_gms.py to test_gms.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology/base.py to base.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology/test_pdbqt.py to test_pdbqt.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology/test_dlpoly.py to test_dlpoly.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology/test_topology_str_types.py to test_topology_str_types.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology/test_lammpsdata.py to test_lammpsdata.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology/test_mmtf.py to test_mmtf.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology/test_guessers.py to test_guessers.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology/test_gro.py to test_gro.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology/test_tprparser.py to test_tprparser.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology/test_minimal.py to test_minimal.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology/test_gsd.py to test_gsd.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology/test_top.py to test_top.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology/test_xyz.py to test_xyz.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology/test_pqr.py to test_pqr.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/topology/test_hoomdxml.py to test_hoomdxml.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/test_api.py to test_api.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis/test_rdf.py to test_rdf.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis/test_rms.py to test_rms.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis/test_diffusionmap.py to test_diffusionmap.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis/test_data.py to test_data.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis/test_leaflet.py to test_leaflet.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis/test_density.py to test_density.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis/test_lineardensity.py to test_lineardensity.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py to test_hydrogenbondautocorrel.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis/test_dihedrals.py to test_dihedrals.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis/test_encore.py to test_encore.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis/test_waterdynamics.py to test_waterdynamics.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis/test_rdf_s.py to test_rdf_s.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis/test_align.py to test_align.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis/test_hole.py to test_hole.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis/test_helanal.py to test_helanal.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis/test_base.py to test_base.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis/test_pca.py to test_pca.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis/test_distances.py to test_distances.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis/test_nuclinfo.py to test_nuclinfo.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis/test_psa.py to test_psa.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis/test_gnm.py to test_gnm.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis/test_wbridge.py to test_wbridge.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis/test_hbonds.py to test_hbonds.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis/test_persistencelength.py to test_persistencelength.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/analysis/test_contacts.py to test_contacts.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/tempdir.py to tempdir.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core/test_copying.py to test_copying.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core/test_universe.py to test_universe.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core/test_segment.py to test_segment.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core/test_residuegroup.py to test_residuegroup.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core/test_updating_atomgroup.py to test_updating_atomgroup.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core/test_flag_deprecations.py to test_flag_deprecations.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core/test_atom.py to test_atom.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core/test_index_dtype.py to test_index_dtype.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core/test_topology.py to test_topology.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core/test_segmentgroup.py to test_segmentgroup.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core/test_group_traj_access.py to test_group_traj_access.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core/test_topologyattrs.py to test_topologyattrs.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core/test_atomgroup.py to test_atomgroup.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core/test_fragments.py to test_fragments.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core/test_atomselections.py to test_atomselections.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core/test_residue.py to test_residue.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core/test_topologyobjects.py to test_topologyobjects.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core/test_requires.py to test_requires.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/core/test_groups.py to test_groups.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/auxiliary/test_xvg.py to test_xvg.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/auxiliary/base.py to base.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/auxiliary/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils/test_units.py to test_units.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils/test_transformations.py to test_transformations.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils/test_modelling.py to test_modelling.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils/test_selections.py to test_selections.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils/test_altloc.py to test_altloc.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils/test_failure.py to test_failure.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils/test_authors.py to test_authors.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils/test_datafiles.py to test_datafiles.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils/test_persistence.py to test_persistence.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils/test_deprecated.py to test_deprecated.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils/test_nuclinfo.py to test_nuclinfo.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils/test_log.py to test_log.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils/test_qcprot.py to test_qcprot.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils/test_streamio.py to test_streamio.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils/test_duecredit.py to test_duecredit.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils/test_imports.py to test_imports.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/utils/test_meta.py to test_meta.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/test_trz.py to test_trz.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/test_pqr.py to test_pqr.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/test_gro.py to test_gro.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/test_dlpoly.py to test_dlpoly.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/base.py to base.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/test_windows.py to test_windows.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/test_mol2.py to test_mol2.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/test_netcdf.py to test_netcdf.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/test_null.py to test_null.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/test_writer_registration.py to test_writer_registration.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/test_lammps.py to test_lammps.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/test_dcd.py to test_dcd.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/reference.py to reference.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/test_copying.py to test_copying.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/test_gms.py to test_gms.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/test_mmtf.py to test_mmtf.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/test_pdbqt.py to test_pdbqt.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/test_xyz.py to test_xyz.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/test_crd.py to test_crd.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/test_dms.py to test_dms.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/test_amber_inpcrd.py to test_amber_inpcrd.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/test_pdb.py to test_pdb.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/test_xdr.py to test_xdr.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/test_memory.py to test_memory.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/test_gsd.py to test_gsd.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/test_chainreader.py to test_chainreader.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/test_txyz.py to test_txyz.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/test_reader_api.py to test_reader_api.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/test_trj.py to test_trj.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/coordinates/test_timestep_api.py to test_timestep_api.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/visualization/test_streamlines.py to test_streamlines.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/visualization/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests/datafiles.py to datafiles.cpython-36.pyc writing byte-compilation script '/tmp/tmpwk3hapmn.py' /usr/local/bin/python3.6 /tmp/tmpwk3hapmn.py removing /tmp/tmpwk3hapmn.py running install_egg_info running egg_info writing MDAnalysisTests.egg-info/PKG-INFO writing dependency_links to MDAnalysisTests.egg-info/dependency_links.txt writing requirements to MDAnalysisTests.egg-info/requires.txt writing top-level names to MDAnalysisTests.egg-info/top_level.txt reading manifest file 'MDAnalysisTests.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'TODO' warning: no files found matching 'SUMMARY.txt' warning: no previously-included files matching '*~' found anywhere in distribution warning: no previously-included files matching '*.pkl' found anywhere in distribution writing manifest file 'MDAnalysisTests.egg-info/SOURCES.txt' Copying MDAnalysisTests.egg-info to /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.6/site-packages/MDAnalysisTests-0.19.2-py3.6.egg-info running install_scripts writing list of installed files to '/construction/science/py-MDAnalysisTests/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:09 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- x====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- x===> Building package for py36-MDAnalysisTests-0.19.2_2 file sizes/checksums [663]: 0% file sizes/checksums [663]: 15% file sizes/checksums [663]: 30% file sizes/checksums [663]: 45% file sizes/checksums [663]: 60% file sizes/checksums [663]: 75% file sizes/checksums [663]: 90% file sizes/checksums [663]: 100% packing files [663]: 0% packing files [663]: 15% packing files [663]: 30% packing files [663]: 45% packing files [663]: 60% packing files [663]: 75% packing files [663]: 90% packing files [663]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:21 TOTAL TIME 00:01:38