------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/expat-2.2.8.txz Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/libffi-3.2.1_3.txz Installing /packages/All/ncurses-6.1.20190525.txz Installing /packages/All/readline-8.0.4.txz Installing /packages/All/gettext-runtime-0.20.1.txz Installing /packages/All/openssl-1.1.1d,1.txz Installing /packages/All/python27-2.7.17_1.txz ===== Message from python27-2.7.17_1: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter Installing /packages/All/py27-setuptools-44.0.0.txz ===== Message from py27-setuptools-44.0.0: -- Only /usr/local/bin/easy_install-2.7 script has been installed since Python 2.7 is not the default Python version. Installing /packages/All/metis-5.1.0_8.txz Installing /packages/All/tbb-2020.1.txz Installing /packages/All/gmp-6.2.0.txz Installing /packages/All/mpfr-4.0.2.txz Installing /packages/All/mpc-1.1.0_2.txz UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/binutils-2.33.1_2,1.txz Installing /packages/All/gcc8-8.4.0.txz ===== Message from gcc8-8.4.0: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/openblas-0.3.7_2,1.txz Installing /packages/All/suitesparse-5.4.0_5.txz Installing /packages/All/py27-numpy-1.16.5_4,1.txz Installing /packages/All/freetype2-2.10.1.txz ===== Message from freetype2-2.10.1: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/site/index.html, if documentation was installed). Installing /packages/All/fontconfig-2.12.6,1.txz Running fc-cache to build fontconfig cache... /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory fc-cache: succeeded Installing /packages/All/libfontenc-1.1.4.txz Installing /packages/All/mkfontscale-1.2.1.txz Installing /packages/All/adobe-cmaps-20051217_4.txz Installing /packages/All/jbigkit-2.1_1.txz Installing /packages/All/jpeg-turbo-2.0.4.txz Installing /packages/All/tiff-4.1.0.txz Installing /packages/All/lcms2-2.9.txz Installing /packages/All/png-1.6.37.txz Installing /packages/All/openjpeg-2.3.1.txz Installing /packages/All/giflib-5.2.1.txz Installing /packages/All/webp-1.1.0.txz Installing /packages/All/tcl86-8.6.10.txz Installing /packages/All/libXau-1.0.9.txz Installing /packages/All/libxml2-2.9.10.txz Installing /packages/All/libpthread-stubs-0.4.txz Installing /packages/All/xorgproto-2019.2.txz Installing /packages/All/libXdmcp-1.1.3.txz Installing /packages/All/libxcb-1.13.1.txz Installing /packages/All/libX11-1.6.9,1.txz Installing /packages/All/libXext-1.3.4,1.txz Installing /packages/All/libXrender-0.9.10_2.txz Installing /packages/All/libXft-2.3.3.txz Installing /packages/All/libXScrnSaver-1.2.3_2.txz Installing /packages/All/tk86-8.6.10_1.txz Installing /packages/All/py27-olefile-0.46.txz Installing /packages/All/py27-tkinter-2.7.17_6.txz Installing /packages/All/py27-pillow6-6.2.2.txz Installing /packages/All/py27-reportlab-3.5.21_1.txz Installing /packages/All/py27-biopython-1.73_1.txz Installing /packages/All/libgpg-error-1.37.txz Installing /packages/All/libgcrypt-1.8.5.txz Installing /packages/All/libxslt-1.1.34_1.txz Installing /packages/All/py27-lxml-4.5.0.txz Installing /packages/All/py27-citeproc-py-0.5.0.txz Installing /packages/All/py27-certifi-2019.11.28.txz Installing /packages/All/py27-chardet-3.0.4_3.txz Installing /packages/All/py27-idna-2.8.txz Installing /packages/All/py27-pysocks-1.7.1.txz Installing /packages/All/py27-asn1crypto-1.3.0.txz Installing /packages/All/py27-pycparser-2.19.txz Installing /packages/All/py27-cffi-1.14.0.txz Installing /packages/All/py27-enum34-1.1.6.txz Installing /packages/All/py27-ipaddress-1.0.23.txz Installing /packages/All/py27-six-1.14.0.txz Installing /packages/All/py27-cryptography-2.6.1.txz Installing /packages/All/py27-openssl-19.0.0.txz Installing /packages/All/py27-urllib3-1.25.7,1.txz ===== Message from py27-urllib3-1.25.7,1: -- Since version 1.25 HTTPS connections are now verified by default which is done via "cert_reqs = 'CERT_REQUIRED'". While certificate verification can be disabled via "cert_reqs = 'CERT_NONE'", it's highly recommended to leave it on. Various consumers of net/py-urllib3 already have implemented routines that either explicitly enable or disable HTTPS certificate verification (e.g. via configuration settings, CLI arguments, etc.). Yet it may happen that there are still some consumers which don't explicitly enable/disable certificate verification for HTTPS connections which could then lead to errors (as is often the case with self-signed certificates). In case of an error one should try first to temporarily disable certificate verification of the problematic urllib3 consumer to see if that approach will remedy the issue. Installing /packages/All/py27-requests-2.22.0.txz Installing /packages/All/py27-duecredit-0.8.0.txz Installing /packages/All/py27-GridDataFormats-0.5.0_1.txz Installing /packages/All/py27-gsd-1.10.0.txz Installing /packages/All/py27-joblib-0.13.0.txz Installing /packages/All/pcre-8.43_2.txz Installing /packages/All/libiconv-1.14_11.txz Installing /packages/All/python37-3.7.6.txz ===== Message from python37-3.7.6: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py37-gdbm databases/py-gdbm@py37 py37-sqlite3 databases/py-sqlite3@py37 py37-tkinter x11-toolkits/py-tkinter@py37 Installing /packages/All/glib-2.56.3_7,1.txz No schema files found: doing nothing. Installing /packages/All/atk-2.28.1.txz Installing /packages/All/wayland-1.16.0.txz Installing /packages/All/pciids-20200222.txz Installing /packages/All/libpciaccess-0.16.txz Installing /packages/All/libdrm-2.4.100.txz Installing /packages/All/libelf-0.8.13_3.txz Installing /packages/All/libXfixes-5.0.3_2.txz Installing /packages/All/libXdamage-1.1.5.txz Installing /packages/All/libXrandr-1.5.2.txz Installing /packages/All/libxshmfence-1.3.txz Installing /packages/All/libXxf86vm-1.1.4_3.txz Installing /packages/All/mesa-libs-18.3.2_4.txz Installing /packages/All/pixman-0.38.4.txz Installing /packages/All/cairo-1.16.0,2.txz Installing /packages/All/shared-mime-info-1.10_2.txz Installing /packages/All/gdk-pixbuf2-2.40.0.txz Installing /packages/All/libdaemon-0.14_1.txz Installing /packages/All/libICE-1.0.10,1.txz Installing /packages/All/libSM-1.2.3,1.txz Installing /packages/All/dbus-1.12.16.txz ===> Creating groups. Creating group 'messagebus' with gid '556'. ===> Creating users Creating user 'messagebus' with uid '556'. Installing /packages/All/dbus-glib-0.110.txz Installing /packages/All/gdbm-1.18.1_1.txz Installing /packages/All/gobject-introspection-1.56.1,1.txz Installing /packages/All/gnome_subr-1.0.txz Installing /packages/All/avahi-app-0.7_2.txz ===> Creating groups. Creating group 'avahi' with gid '558'. ===> Creating users Creating user 'avahi' with uid '558'. Installing /packages/All/nettle-3.5.1_1.txz Installing /packages/All/libtasn1-4.15.0.txz Installing /packages/All/libunistring-0.9.10_1.txz Installing /packages/All/libidn2-2.3.0_1.txz Installing /packages/All/ca_root_nss-3.51.txz ===== Message from ca_root_nss-3.51: -- FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem Installing /packages/All/p11-kit-0.23.18.1.txz Installing /packages/All/tpm-emulator-0.7.4_2.txz ===> Creating groups. Creating group '_tss' with gid '601'. ===> Creating users Creating user '_tss' with uid '601'. Installing /packages/All/trousers-0.3.14_2.txz ===> Creating groups. Using existing group '_tss'. ===> Creating users Using existing user '_tss'. ===== Message from trousers-0.3.14_2: -- To run tcsd automatically, add the following line to /etc/rc.conf: tcsd_enable="YES" You might want to edit /usr/local/etc/tcsd.conf to reflect your setup. If you want to use tcsd with software TPM emulator, use the following configuration in /etc/rc.conf: tcsd_enable="YES" tcsd_mode="emulator" tpmd_enable="YES" To use TPM, add your_account to '_tss' group like following: # pw groupmod _tss -m your_account Installing /packages/All/gnutls-3.6.12.txz Installing /packages/All/libpaper-1.1.24.4.txz Installing /packages/All/cups-2.2.13.txz ===> Creating groups. Creating group 'cups' with gid '193'. ===> Creating users Creating user 'cups' with uid '193'. Installing /packages/All/graphite2-1.3.13_1.txz Installing /packages/All/harfbuzz-2.6.4.txz Installing /packages/All/fribidi-0.19.7.txz Installing /packages/All/font-bh-ttf-1.0.3_4.txz Installing /packages/All/font-misc-meltho-1.0.3_4.txz Installing /packages/All/font-misc-ethiopic-1.0.3_4.txz Installing /packages/All/encodings-1.0.5,1.txz Installing /packages/All/dejavu-2.37_1.txz ===== Message from dejavu-2.37_1: -- Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. Installing /packages/All/xorg-fonts-truetype-7.7_1.txz Installing /packages/All/pango-1.42.4_3.txz Installing /packages/All/hicolor-icon-theme-0.17.txz Installing /packages/All/libXinerama-1.1.4_2,1.txz Installing /packages/All/libXi-1.7.10,1.txz Installing /packages/All/libXcursor-1.2.0.txz Installing /packages/All/libXcomposite-0.4.5,1.txz Installing /packages/All/gtk-update-icon-cache-2.24.32.txz Installing /packages/All/gtk2-2.24.32.txz Installing /packages/All/xmlcatmgr-2.2_2.txz + Creating /usr/local/share/sgml/catalog + Registering CATALOG catalog.ports (SGML) + Creating /usr/local/share/sgml/catalog.ports + Creating /usr/local/share/xml/catalog + Registering nextCatalog catalog.ports (XML) + Creating /usr/local/share/xml/catalog.ports ===== Message from xmlcatmgr-2.2_2: -- The following catalogs are installed: 1) /usr/local/share/sgml/catalog The top level catalog for SGML stuff. It is not changed by any ports/packages except textproc/xmlcatmgr. 2) /usr/local/share/sgml/catalog.ports This catalog is for handling SGML stuff installed under /usr/local/share/sgml. It is changed by ports/packages. 3) /usr/local/share/xml/catalog The top level catalog for XML stuff. It is not changed by any ports/packages except textproc/xmlcatmgr. 4) /usr/local/share/xml/catalog.ports This catalog is for handling XML stuff installed under /usr/local/share/xml. It is changed by ports/packages. Installing /packages/All/libglade2-2.6.4_10.txz Installing /packages/All/py27-cycler-0.10.0.txz Installing /packages/All/py27-dateutil-2.8.0.txz Installing /packages/All/py27-pytz-2019.3,1.txz Installing /packages/All/py27-pyparsing-2.4.6.txz Installing /packages/All/py27-futures-3.3.0.txz Installing /packages/All/py27-singledispatch-3.4.0.3_1.txz Installing /packages/All/py27-backports_abc-0.5.txz Installing /packages/All/py27-tornado-5.1.1.txz Installing /packages/All/py27-kiwisolver-1.1.0.txz UNFLAVORED devel/py-gobject -> use devel/py-gobject@py27 Installing /packages/All/py27-cairo-1.18.1_1.txz Installing /packages/All/py27-gobject-2.28.6_8.txz UNFLAVORED x11-toolkits/py-gtk2 -> use x11-toolkits/py-gtk2@py27 UNFLAVORED devel/py-gobject -> use devel/py-gobject@py27 Installing /packages/All/py27-gtk2-2.24.0_5.txz Installing /packages/All/py27-backports-1.txz Installing /packages/All/py27-backports.functools_lru_cache-1.5.txz Installing /packages/All/py27-matplotlib-2.2.4_1.txz Installing /packages/All/py27-msgpack-0.6.2.txz Installing /packages/All/py27-mmtf-python-1.1.2.txz Installing /packages/All/py27-funcsigs-1.0.2.txz Installing /packages/All/py27-mock-3.0.5.txz Installing /packages/All/py27-decorator-4.3.0.txz Installing /packages/All/libltdl-2.4.6.txz Installing /packages/All/libgd-2.2.5_2,1.txz Installing /packages/All/libXt-1.2.0,1.txz Installing /packages/All/libXmu-1.1.3,1.txz Installing /packages/All/libXpm-3.5.13.txz Installing /packages/All/libXaw-1.0.13_3,2.txz Installing /packages/All/graphviz-2.42.3.txz Installing /packages/All/py27-pygraphviz-1.5.txz Installing /packages/All/py27-scipy-1.2.2_1.txz Installing /packages/All/py27-scikit-sparse-0.4.4_3.txz Installing /packages/All/py27-yaml-5.2.txz Installing /packages/All/py27-networkx-2.1,1.txz Installing /packages/All/py27-MDAnalysis-0.19.2_2.txz Installing /packages/All/py27-atomicwrites-1.3.0.txz Installing /packages/All/py27-attrs-19.3.0.txz Installing /packages/All/py27-more-itertools5-5.0.0.txz Installing /packages/All/py27-zipp-0.6.0_3.txz Installing /packages/All/py27-configparser-3.5.3_1,1.txz Installing /packages/All/py27-contextlib2-0.6.0.txz Installing /packages/All/py27-scandir-1.10.0_1.txz Installing /packages/All/py27-pathlib2-2.3.5.txz Installing /packages/All/py27-importlib-metadata-0.23.txz Installing /packages/All/py27-pluggy-0.12.0.txz Installing /packages/All/py27-py-1.8.1.txz Installing /packages/All/py27-wcwidth-0.1.8.txz Installing /packages/All/py27-pytest-4.5.0.txz Installing /packages/All/py27-sortedcontainers-2.1.0.txz Installing /packages/All/py27-hypothesis-4.57.1.txz Installing /packages/All/py27-psutil-5.7.0.txz UNFLAVORED devel/binutils -> use devel/binutils@native UNFLAVORED devel/py-gobject -> use devel/py-gobject@py27 UNFLAVORED x11-toolkits/py-gtk2 -> use x11-toolkits/py-gtk2@py27 UNFLAVORED devel/py-gobject -> use devel/py-gobject@py27 SUCCEEDED 00:01:24 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> py27-MDAnalysisTests-0.19.2_2 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> py27-MDAnalysisTests-0.19.2_2 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py27-MDAnalysisTests-0.19.2_2 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> py27-MDAnalysisTests-0.19.2_2 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py27-MDAnalysisTests-0.19.2_2 for building => SHA256 Checksum OK for MDAnalysisTests-0.19.2.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> py27-MDAnalysisTests-0.19.2_2 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py27-MDAnalysisTests-0.19.2_2 for building ===> Extracting for py27-MDAnalysisTests-0.19.2_2 => SHA256 Checksum OK for MDAnalysisTests-0.19.2.tar.gz. Extracted Memory Use: 81.78M SUCCEEDED 00:00:02 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for py27-MDAnalysisTests-0.19.2_2 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> py27-MDAnalysisTests-0.19.2_2 depends on package: py27-setuptools>0 - found ===> py27-MDAnalysisTests-0.19.2_2 depends on file: /usr/local/bin/python2.7 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> py27-MDAnalysisTests-0.19.2_2 depends on package: py27-setuptools>0 - found ===> py27-MDAnalysisTests-0.19.2_2 depends on file: /usr/local/bin/python2.7 - found ===> Configuring for py27-MDAnalysisTests-0.19.2_2 running config SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for py27-MDAnalysisTests-0.19.2_2 running build running build_py creating build creating build/lib creating build/lib/MDAnalysisTests copying MDAnalysisTests/test_api.py -> build/lib/MDAnalysisTests copying MDAnalysisTests/util.py -> build/lib/MDAnalysisTests copying MDAnalysisTests/__init__.py -> build/lib/MDAnalysisTests copying MDAnalysisTests/tempdir.py -> build/lib/MDAnalysisTests copying MDAnalysisTests/datafiles.py -> build/lib/MDAnalysisTests copying MDAnalysisTests/dummy.py -> build/lib/MDAnalysisTests creating build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_selections.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_authors.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_failure.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_log.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_transformations.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/__init__.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_datafiles.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_deprecated.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_altloc.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_meta.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_modelling.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_imports.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_units.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_nuclinfo.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_streamio.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_persistence.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_qcprot.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_duecredit.py -> build/lib/MDAnalysisTests/utils creating build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_fragments.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/__init__.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_topology.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_atomgroup.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_segment.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_updating_atomgroup.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_residue.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_segmentgroup.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_residuegroup.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_index_dtype.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_flag_deprecations.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_universe.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_atomselections.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_copying.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_topologyobjects.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_requires.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_groups.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_topologyattrs.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_atom.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_group_traj_access.py -> build/lib/MDAnalysisTests/core creating build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_copying.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_memory.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_xyz.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_xdr.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_amber_inpcrd.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_gro.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_crd.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_trz.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_netcdf.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_txyz.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_mmtf.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_dlpoly.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/base.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/reference.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_pdb.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_reader_api.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_mol2.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_windows.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_timestep_api.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_null.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_pdbqt.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_gsd.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_writer_registration.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_chainreader.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/__init__.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_lammps.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_gms.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_dcd.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_pqr.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_dms.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_trj.py -> build/lib/MDAnalysisTests/coordinates creating build/lib/MDAnalysisTests/formats copying MDAnalysisTests/formats/test_libmdaxdr.py -> build/lib/MDAnalysisTests/formats copying MDAnalysisTests/formats/test_libdcd.py -> build/lib/MDAnalysisTests/formats copying MDAnalysisTests/formats/__init__.py -> build/lib/MDAnalysisTests/formats creating build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_gsd.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_xyz.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_minimal.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_txyz.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_topology_str_types.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_gms.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_hoomdxml.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_pdbqt.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_tprparser.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_gro.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_crd.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_mol2.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/base.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_psf.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_pqr.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_pdb.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_xpdb.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_topology_base.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/__init__.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_dms.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_lammpsdata.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_mmtf.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_dlpoly.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_guessers.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_top.py -> build/lib/MDAnalysisTests/topology creating build/lib/MDAnalysisTests/import copying MDAnalysisTests/import/__init__.py -> build/lib/MDAnalysisTests/import copying MDAnalysisTests/import/test_import.py -> build/lib/MDAnalysisTests/import copying MDAnalysisTests/import/fork_called.py -> build/lib/MDAnalysisTests/import creating build/lib/MDAnalysisTests/lib copying MDAnalysisTests/lib/__init__.py -> build/lib/MDAnalysisTests/lib copying MDAnalysisTests/lib/test_neighborsearch.py -> build/lib/MDAnalysisTests/lib copying MDAnalysisTests/lib/test_pkdtree.py -> build/lib/MDAnalysisTests/lib copying MDAnalysisTests/lib/test_nsgrid.py -> build/lib/MDAnalysisTests/lib copying MDAnalysisTests/lib/test_augment.py -> build/lib/MDAnalysisTests/lib copying MDAnalysisTests/lib/test_cutil.py -> build/lib/MDAnalysisTests/lib copying MDAnalysisTests/lib/test_util.py -> build/lib/MDAnalysisTests/lib copying MDAnalysisTests/lib/test_distances.py -> build/lib/MDAnalysisTests/lib creating build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_data.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_pca.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_align.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/__init__.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_leaflet.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_rdf_s.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_encore.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_dihedrals.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_rdf.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_gnm.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_waterdynamics.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_helanal.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_contacts.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_diffusionmap.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_base.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_wbridge.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_psa.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_nuclinfo.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_distances.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_hbonds.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_lineardensity.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_rms.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_hole.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_persistencelength.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_density.py -> build/lib/MDAnalysisTests/analysis creating build/lib/MDAnalysisTests/visualization copying MDAnalysisTests/visualization/__init__.py -> build/lib/MDAnalysisTests/visualization copying MDAnalysisTests/visualization/test_streamlines.py -> build/lib/MDAnalysisTests/visualization creating build/lib/MDAnalysisTests/auxiliary copying MDAnalysisTests/auxiliary/base.py -> build/lib/MDAnalysisTests/auxiliary copying MDAnalysisTests/auxiliary/test_xvg.py -> build/lib/MDAnalysisTests/auxiliary copying MDAnalysisTests/auxiliary/__init__.py -> build/lib/MDAnalysisTests/auxiliary creating build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/tip125_tric_C36.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/namd_cgenff.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/watdyn.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/nosegid.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_closed_NAMD.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/trz_psf.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/SiN_tric_namd.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_notop.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_notop_BAD.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/2r9r-1b.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/empty.dcd -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_gbis_tmd-fast1_NAMD.dcd -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/SiN_tric_namd.dcd -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_dims.dcd -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_dims2.dcd -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/watdyn.dcd -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/tip125_tric_C36.dcd -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/namd_cgenff.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/model_then_cryst.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/1hvr.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cryst_then_model.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/RANDOM_WALK_TOPO.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/unordered_res.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/nucl_res.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/1k5i.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_closed.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/CONECT2TER.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cobrotoxin_dry_neutral_0.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/conect_parsing.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/A6PA6_alpha.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/SINGLECONECT.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/align.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/pdbqt_querypdb.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cobrotoxin.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_open.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/4E43.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/xl_serial.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/5digitResid.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/nmr_neopetrosiamide.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/sameresid_diffresname.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/1grm_single.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/incomplete.pdb -> build/lib/MDAnalysisTests/data creating build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/ab42_gmx_4.6.1.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.0.3.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_5.0.4.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.5.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.5.1.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_5.0.5.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_5.1.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.5.3.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.5.5.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.5.2.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.0.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.5.4.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.0.4.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_2018.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/ab42_gmx_4.6.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.0.5.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/drew_gmx_4.5.5.double.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_2016.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.0.7.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_5.0.2.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.0.6.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.0.2.tpr -> build/lib/MDAnalysisTests/data/tprs creating build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy.gro -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy.top -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy_2018.mdp -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy.mdp -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/adk_oplsaa.tpr -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cobrotoxin.tpr -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/martini_dppc_chol_bilayer.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/sample_velocity_file.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/residwrap_0base.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/dppc_vesicle_hg.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/two_water_gro.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/make_whole.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/residwrap.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/plength.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/grovels.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/empty_atom.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/missing_atomname.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/two_water_gro_nonames.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/sameresid_diffresname.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/two_water_gro_widebox.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cobrotoxin.xtc -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa.xtc -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/xyz_random_walk.xtc -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cobrotoxin.trr -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa.trr -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa_janin.npy -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa_LYS_janin.npy -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa_rama.npy -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/legacy_DCD_c36_coords.npy -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa_dihedral.npy -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa_CA_rmsf.npy -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/legacy_DCD_adk_coords.npy -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/legacy_DCD_NAMD_coords.npy -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa_dihedral_list.npy -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa_GLY_rama.npy -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_open.crd -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/five.xyz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/mini.xyz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/2r9r-1b.xyz -> build/lib/MDAnalysisTests/data creating build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/tz2.truncoct.parm7.bz2 -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/ache.mdcrd.bz2 -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/capped-ala.mdcrd.bz2 -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/anti_md1.mdcrd.bz2 -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/chitosan.prmtop -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/capped-ala.prmtop -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/ache.prmtop -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/bala.prmtop -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/anti.top -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/posfor.top -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/ace_mbondi3.error2.parm7 -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/ace_mbondi3.error3.parm7 -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/ace_mbondi3.parm7 -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/ace_mbondi3.error1.parm7 -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/bala.trj -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/ache.mdcrd -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/bala.ncdf -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/posfor.ncdf -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/tz2.truncoct.nc -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/test.inpcrd -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/adk_open.pqr -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/1A2C.pqr -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/pdbqt_inputpdbqt.pdbqt -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/model_then_cryst.pdb.bz2 -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/bigbox.gro.bz2 -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cobrotoxin_protein_forces.xvg.bz2 -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/1grm_elNemo_mode7.pdb.bz2 -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/C12x64.xml.bz2 -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cryst_then_model.pdb.bz2 -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/2r9r-1b.xyz.bz2 -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cryst_then_model.pdb.gz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/1osm.pdb.gz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/model_then_cryst.pdb.gz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/19hc.pdb.gz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/chainIDnewres.pdb.gz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/fullerene.pdb.gz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/chainIDrepeat.pdb.gz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/5KIH.mmtf.gz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/1a28.pdb.gz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/testENT.ent -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/test.fasta -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/helanal_bending_matrix_AdK_DIMS_H8.dat -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_closed.dms -> build/lib/MDAnalysisTests/data creating build/lib/MDAnalysisTests/data/merge creating build/lib/MDAnalysisTests/data/merge/2zmm copying MDAnalysisTests/data/merge/2zmm/protein.pdb -> build/lib/MDAnalysisTests/data/merge/2zmm copying MDAnalysisTests/data/merge/2zmm/water.pdb -> build/lib/MDAnalysisTests/data/merge/2zmm copying MDAnalysisTests/data/merge/2zmm/ligand.pdb -> build/lib/MDAnalysisTests/data/merge/2zmm copying MDAnalysisTests/data/trzfile.trz -> build/lib/MDAnalysisTests/data creating build/lib/MDAnalysisTests/data/mol2 copying MDAnalysisTests/data/mol2/Molecule.mol2 -> build/lib/MDAnalysisTests/data/mol2 copying MDAnalysisTests/data/mol2/zinc_856218.mol2 -> build/lib/MDAnalysisTests/data/mol2 copying MDAnalysisTests/data/mol2/BrokenMolecule.mol2 -> build/lib/MDAnalysisTests/data/mol2 copying MDAnalysisTests/data/mol2/Molecules.mol2 -> build/lib/MDAnalysisTests/data/mol2 creating build/lib/MDAnalysisTests/data/contacts copying MDAnalysisTests/data/contacts/villin_unfolded.gro.bz2 -> build/lib/MDAnalysisTests/data/contacts copying MDAnalysisTests/data/contacts/villin_folded.gro.bz2 -> build/lib/MDAnalysisTests/data/contacts copying MDAnalysisTests/data/contacts/2F4K_qlist5_remap.dat -> build/lib/MDAnalysisTests/data/contacts creating build/lib/MDAnalysisTests/data/capping copying MDAnalysisTests/data/capping/aaqaa.gro -> build/lib/MDAnalysisTests/data/capping copying MDAnalysisTests/data/capping/ace.pdb -> build/lib/MDAnalysisTests/data/capping copying MDAnalysisTests/data/capping/nma.pdb -> build/lib/MDAnalysisTests/data/capping copying MDAnalysisTests/data/capping/maestro_aaqaa_capped.pdb -> build/lib/MDAnalysisTests/data/capping creating build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/datatest.trz -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/mini.data -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/deletedatoms.data -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/ifabp_apo_100mM.dcd -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data2 -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/wat.lammpstrj.bz2 -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/datatest.data -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/ifabp_apo_100mM.in -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/hydrogen-class1.data -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/hydrogen-class1.data2 -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/ifabp_apo_100mM.data.bz2 -> build/lib/MDAnalysisTests/data/lammps creating build/lib/MDAnalysisTests/data/gms copying MDAnalysisTests/data/gms/symopt.gms -> build/lib/MDAnalysisTests/data/gms copying MDAnalysisTests/data/gms/surf2wat.gms -> build/lib/MDAnalysisTests/data/gms copying MDAnalysisTests/data/gms/c1opt.gms.gz -> build/lib/MDAnalysisTests/data/gms creating build/lib/MDAnalysisTests/data/dlpoly copying MDAnalysisTests/data/dlpoly/CONFIG_minimal -> build/lib/MDAnalysisTests/data/dlpoly copying MDAnalysisTests/data/dlpoly/CONFIG_order -> build/lib/MDAnalysisTests/data/dlpoly copying MDAnalysisTests/data/dlpoly/CONFIG -> build/lib/MDAnalysisTests/data/dlpoly copying MDAnalysisTests/data/dlpoly/HISTORY_order -> build/lib/MDAnalysisTests/data/dlpoly copying MDAnalysisTests/data/dlpoly/HISTORY -> build/lib/MDAnalysisTests/data/dlpoly copying MDAnalysisTests/data/dlpoly/HISTORY_minimal -> build/lib/MDAnalysisTests/data/dlpoly creating build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.txyz -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.dcd -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.xtc -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.arc -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/create_data.py -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test_topology.pdb -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.xyz -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.trr -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/new_hexane.arc -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.gro.bz2 -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/README.md -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.gro -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test_incomplete_vel.gro -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.xyz.bz2 -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/test_highf.xvg -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/test.xvg -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/test_lowf.xvg -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/bad_num_col.xvg -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/173D.mmtf -> build/lib/MDAnalysisTests/data creating build/lib/MDAnalysisTests/data/analysis copying MDAnalysisTests/data/analysis/YiiP_lipids.xtc -> build/lib/MDAnalysisTests/data/analysis copying MDAnalysisTests/data/analysis/align_bound.pdb.gz -> build/lib/MDAnalysisTests/data/analysis copying MDAnalysisTests/data/analysis/align_unbound.pdb.gz -> build/lib/MDAnalysisTests/data/analysis copying MDAnalysisTests/data/analysis/YiiP_lipids.gro.gz -> build/lib/MDAnalysisTests/data/analysis copying MDAnalysisTests/data/example.gsd -> build/lib/MDAnalysisTests/data creating build/lib/MDAnalysisTests/data/windows copying MDAnalysisTests/data/windows/WIN_wat.lammpstrj -> build/lib/MDAnalysisTests/data/windows copying MDAnalysisTests/data/windows/WIN_ache.mdcrd -> build/lib/MDAnalysisTests/data/windows copying MDAnalysisTests/data/windows/README.md -> build/lib/MDAnalysisTests/data/windows copying MDAnalysisTests/data/windows/WIN_test.arc -> build/lib/MDAnalysisTests/data/windows copying MDAnalysisTests/data/windows/WIN_nmr_neopetrosiamide.pdb -> build/lib/MDAnalysisTests/data/windows copying MDAnalysisTests/data/windows/WIN_HISTORY -> build/lib/MDAnalysisTests/data/windows SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> py27-MDAnalysisTests-0.19.2_2 depends on package: py27-numpy>=1.15,1<1.19,1 - found ===> py27-MDAnalysisTests-0.19.2_2 depends on package: py27-MDAnalysis>0 - found ===> py27-MDAnalysisTests-0.19.2_2 depends on package: py27-pytest>=3.1.2 - found ===> py27-MDAnalysisTests-0.19.2_2 depends on package: py27-hypothesis>0 - found ===> py27-MDAnalysisTests-0.19.2_2 depends on package: py27-psutil>=4.0.2 - found ===> py27-MDAnalysisTests-0.19.2_2 depends on package: py27-mock>=2.0.0 - found ===> py27-MDAnalysisTests-0.19.2_2 depends on package: py27-setuptools>0 - found ===> py27-MDAnalysisTests-0.19.2_2 depends on file: /usr/local/bin/python2.7 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for py27-MDAnalysisTests-0.19.2_2 ===> py27-MDAnalysisTests-0.19.2_2 depends on package: py27-numpy>=1.15,1<1.19,1 - found ===> py27-MDAnalysisTests-0.19.2_2 depends on package: py27-MDAnalysis>0 - found ===> py27-MDAnalysisTests-0.19.2_2 depends on package: py27-pytest>=3.1.2 - found ===> py27-MDAnalysisTests-0.19.2_2 depends on package: py27-hypothesis>0 - found ===> py27-MDAnalysisTests-0.19.2_2 depends on package: py27-psutil>=4.0.2 - found ===> py27-MDAnalysisTests-0.19.2_2 depends on package: py27-mock>=2.0.0 - found ===> py27-MDAnalysisTests-0.19.2_2 depends on package: py27-setuptools>0 - found ===> py27-MDAnalysisTests-0.19.2_2 depends on file: /usr/local/bin/python2.7 - found ===> Generating temporary packing list running install running build running build_py running install_lib creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7 creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests copying build/lib/MDAnalysisTests/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/formats copying build/lib/MDAnalysisTests/formats/test_libdcd.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/formats copying build/lib/MDAnalysisTests/formats/test_libmdaxdr.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/formats copying build/lib/MDAnalysisTests/formats/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/formats creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_pdb.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_copying.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_crd.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_amber_inpcrd.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_windows.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_memory.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_lammps.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_trj.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/base.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_null.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_reader_api.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_gsd.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_gms.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_trz.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_xyz.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_mmtf.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_dlpoly.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_pdbqt.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_mol2.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_xdr.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_timestep_api.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_writer_registration.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_chainreader.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_dcd.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/reference.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_txyz.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_gro.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_netcdf.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_dms.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_pqr.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/lib copying build/lib/MDAnalysisTests/lib/test_pkdtree.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/lib copying build/lib/MDAnalysisTests/lib/test_augment.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/lib copying build/lib/MDAnalysisTests/lib/test_distances.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/lib copying build/lib/MDAnalysisTests/lib/test_cutil.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/lib copying build/lib/MDAnalysisTests/lib/test_util.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/lib copying build/lib/MDAnalysisTests/lib/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/lib copying build/lib/MDAnalysisTests/lib/test_neighborsearch.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/lib copying build/lib/MDAnalysisTests/lib/test_nsgrid.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/lib copying build/lib/MDAnalysisTests/datafiles.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests copying build/lib/MDAnalysisTests/test_api.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests copying build/lib/MDAnalysisTests/dummy.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/visualization copying build/lib/MDAnalysisTests/visualization/test_streamlines.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/visualization copying build/lib/MDAnalysisTests/visualization/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/visualization creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_failure.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_transformations.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_qcprot.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_streamio.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_duecredit.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_modelling.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_deprecated.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_log.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_datafiles.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_persistence.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_authors.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_altloc.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_units.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_imports.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_meta.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_selections.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_nuclinfo.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/test.fasta -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/mol2 copying build/lib/MDAnalysisTests/data/mol2/BrokenMolecule.mol2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/mol2 copying build/lib/MDAnalysisTests/data/mol2/Molecule.mol2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/mol2 copying build/lib/MDAnalysisTests/data/mol2/zinc_856218.mol2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/mol2 copying build/lib/MDAnalysisTests/data/mol2/Molecules.mol2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/mol2 copying build/lib/MDAnalysisTests/data/xl_serial.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/martini_dppc_chol_bilayer.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/cryst_then_model.pdb.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/fullerene.pdb.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/watdyn.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa_CA_rmsf.npy -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa_LYS_janin.npy -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/legacy_DCD_NAMD_coords.npy -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/nmr_neopetrosiamide.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/helanal_bending_matrix_AdK_DIMS_H8.dat -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/1osm.pdb.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/legacy_DCD_adk_coords.npy -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/dlpoly copying build/lib/MDAnalysisTests/data/dlpoly/HISTORY_minimal -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/dlpoly copying build/lib/MDAnalysisTests/data/dlpoly/CONFIG -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/dlpoly copying build/lib/MDAnalysisTests/data/dlpoly/HISTORY_order -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/dlpoly copying build/lib/MDAnalysisTests/data/dlpoly/HISTORY -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/dlpoly copying build/lib/MDAnalysisTests/data/dlpoly/CONFIG_order -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/dlpoly copying build/lib/MDAnalysisTests/data/dlpoly/CONFIG_minimal -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/dlpoly copying build/lib/MDAnalysisTests/data/adk_oplsaa.trr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/two_water_gro_widebox.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.trr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.gro.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.xyz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.xtc -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.xyz.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.dcd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/new_hexane.arc -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test_topology.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.arc -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/create_data.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test_incomplete_vel.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/README.md -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.txyz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/coordinates creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/contacts copying build/lib/MDAnalysisTests/data/contacts/villin_folded.gro.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/contacts copying build/lib/MDAnalysisTests/data/contacts/2F4K_qlist5_remap.dat -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/contacts copying build/lib/MDAnalysisTests/data/contacts/villin_unfolded.gro.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/contacts copying build/lib/MDAnalysisTests/data/1hvr.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/cobrotoxin.trr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/1a28.pdb.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_gbis_tmd-fast1_NAMD.dcd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/capping copying build/lib/MDAnalysisTests/data/capping/ace.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/capping copying build/lib/MDAnalysisTests/data/capping/maestro_aaqaa_capped.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/capping copying build/lib/MDAnalysisTests/data/capping/aaqaa.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/capping copying build/lib/MDAnalysisTests/data/capping/nma.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/capping copying build/lib/MDAnalysisTests/data/cobrotoxin_dry_neutral_0.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/ifabp_apo_100mM.dcd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/hydrogen-class1.data2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/mini.data -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/deletedatoms.data -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/wat.lammpstrj.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/datatest.trz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/ifabp_apo_100mM.in -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/ifabp_apo_100mM.data.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/datatest.data -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/hydrogen-class1.data -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/4E43.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/mini.xyz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/tz2.truncoct.nc -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/ache.mdcrd.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/bala.trj -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/test.inpcrd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/ace_mbondi3.parm7 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/capped-ala.mdcrd.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/posfor.ncdf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/posfor.top -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/chitosan.prmtop -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/anti.top -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/ace_mbondi3.error1.parm7 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/tz2.truncoct.parm7.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/capped-ala.prmtop -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/ace_mbondi3.error2.parm7 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/anti_md1.mdcrd.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/bala.prmtop -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/ache.prmtop -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/ache.mdcrd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/ace_mbondi3.error3.parm7 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/bala.ncdf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/adk_oplsaa_rama.npy -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa_dihedral.npy -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa_GLY_rama.npy -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/5digitResid.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/test_highf.xvg -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/watdyn.dcd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/1k5i.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_open.crd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/model_then_cryst.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/cryst_then_model.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/2r9r-1b.xyz.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/conect_parsing.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/cobrotoxin.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/plength.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_notop.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_5.1.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_2018.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.7.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/ab42_gmx_4.6.1.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.3.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy.mdp -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy.top -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.mdp -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.2.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.2.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/drew_gmx_4.5.5.double.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.2.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.6.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_2016.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.5.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.3.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.1.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.4.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.4.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/ab42_gmx_4.6.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.5.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.4.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.5.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/windows copying build/lib/MDAnalysisTests/data/windows/WIN_wat.lammpstrj -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/windows copying build/lib/MDAnalysisTests/data/windows/WIN_test.arc -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/windows copying build/lib/MDAnalysisTests/data/windows/README.md -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/windows copying build/lib/MDAnalysisTests/data/windows/WIN_HISTORY -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/windows copying build/lib/MDAnalysisTests/data/windows/WIN_ache.mdcrd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/windows copying build/lib/MDAnalysisTests/data/windows/WIN_nmr_neopetrosiamide.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/windows copying build/lib/MDAnalysisTests/data/A6PA6_alpha.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/analysis copying build/lib/MDAnalysisTests/data/analysis/YiiP_lipids.xtc -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/analysis copying build/lib/MDAnalysisTests/data/analysis/align_bound.pdb.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/analysis copying build/lib/MDAnalysisTests/data/analysis/YiiP_lipids.gro.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/analysis copying build/lib/MDAnalysisTests/data/analysis/align_unbound.pdb.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/analysis copying build/lib/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/residwrap.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/dppc_vesicle_hg.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/empty.dcd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/incomplete.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/SINGLECONECT.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_closed.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/SiN_tric_namd.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/unordered_res.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/namd_cgenff.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/trz_psf.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/sameresid_diffresname.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/tip125_tric_C36.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_closed.dms -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa_janin.npy -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa.xtc -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/cobrotoxin.xtc -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/SiN_tric_namd.dcd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/test_lowf.xvg -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/bad_num_col.xvg -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/five.xyz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_dims2.dcd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/1A2C.pqr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/cobrotoxin.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/2r9r-1b.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/trzfile.trz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/namd_cgenff.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/cryst_then_model.pdb.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/legacy_DCD_c36_coords.npy -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/chainIDrepeat.pdb.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/missing_atomname.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/nucl_res.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/testENT.ent -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/xyz_random_walk.xtc -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/nosegid.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_notop_BAD.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/sample_velocity_file.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/1grm_single.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/pdbqt_querypdb.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/grovels.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/2r9r-1b.xyz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_dims.dcd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/chainIDnewres.pdb.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/sameresid_diffresname.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/5KIH.mmtf.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/two_water_gro_nonames.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/C12x64.xml.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/RANDOM_WALK_TOPO.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/1grm_elNemo_mode7.pdb.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/model_then_cryst.pdb.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/residwrap_0base.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/gms copying build/lib/MDAnalysisTests/data/gms/surf2wat.gms -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/gms copying build/lib/MDAnalysisTests/data/gms/symopt.gms -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/gms copying build/lib/MDAnalysisTests/data/gms/c1opt.gms.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/gms copying build/lib/MDAnalysisTests/data/adk_open.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/bigbox.gro.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/pdbqt_inputpdbqt.pdbqt -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/19hc.pdb.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/empty_atom.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/merge creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/merge/2zmm copying build/lib/MDAnalysisTests/data/merge/2zmm/protein.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/merge/2zmm copying build/lib/MDAnalysisTests/data/merge/2zmm/water.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/merge/2zmm copying build/lib/MDAnalysisTests/data/merge/2zmm/ligand.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/merge/2zmm copying build/lib/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/model_then_cryst.pdb.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/tip125_tric_C36.dcd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/CONECT2TER.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/test.xvg -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/two_water_gro.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/cobrotoxin_protein_forces.xvg.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_closed_NAMD.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/173D.mmtf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/example.gsd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_open.pqr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/make_whole.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa_dihedral_list.npy -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/align.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_txyz.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_hoomdxml.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_pdb.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_dlpoly.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_gms.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_mmtf.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_topology_base.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_xyz.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_mol2.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_guessers.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_gro.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/base.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_tprparser.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_dms.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_minimal.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_psf.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_gsd.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_topology_str_types.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_top.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_crd.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_pqr.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_xpdb.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_pdbqt.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_lammpsdata.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/util.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_atom.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_group_traj_access.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_residuegroup.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_requires.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_copying.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_flag_deprecations.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_universe.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_groups.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_residue.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_fragments.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_segmentgroup.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_atomgroup.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_topologyobjects.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_index_dtype.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_updating_atomgroup.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_topology.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_atomselections.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_segment.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_topologyattrs.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/import copying build/lib/MDAnalysisTests/import/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/import copying build/lib/MDAnalysisTests/import/fork_called.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/import copying build/lib/MDAnalysisTests/import/test_import.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/import creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/auxiliary copying build/lib/MDAnalysisTests/auxiliary/base.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/auxiliary copying build/lib/MDAnalysisTests/auxiliary/test_xvg.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/auxiliary copying build/lib/MDAnalysisTests/auxiliary/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/auxiliary copying build/lib/MDAnalysisTests/tempdir.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_helanal.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_density.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_encore.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_hbonds.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_rms.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_dihedrals.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_lineardensity.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_rdf_s.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_diffusionmap.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_nuclinfo.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_psa.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_data.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_base.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_distances.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_hole.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_persistencelength.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_wbridge.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_rdf.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_contacts.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_gnm.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_leaflet.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_waterdynamics.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_pca.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_align.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/__init__.py to __init__.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/formats/test_libdcd.py to test_libdcd.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/formats/test_libmdaxdr.py to test_libmdaxdr.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/formats/__init__.py to __init__.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates/test_pdb.py to test_pdb.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates/test_copying.py to test_copying.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates/test_crd.py to test_crd.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates/test_amber_inpcrd.py to test_amber_inpcrd.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates/test_windows.py to test_windows.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates/test_memory.py to test_memory.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates/test_lammps.py to test_lammps.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates/test_trj.py to test_trj.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates/base.py to base.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates/test_null.py to test_null.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates/test_reader_api.py to test_reader_api.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates/test_gsd.py to test_gsd.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates/test_gms.py to test_gms.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates/test_trz.py to test_trz.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates/test_xyz.py to test_xyz.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates/test_mmtf.py to test_mmtf.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates/test_dlpoly.py to test_dlpoly.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates/__init__.py to __init__.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates/test_pdbqt.py to test_pdbqt.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates/test_mol2.py to test_mol2.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates/test_xdr.py to test_xdr.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates/test_timestep_api.py to test_timestep_api.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates/test_writer_registration.py to test_writer_registration.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates/test_chainreader.py to test_chainreader.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates/test_dcd.py to test_dcd.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates/reference.py to reference.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates/test_txyz.py to test_txyz.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates/test_gro.py to test_gro.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates/test_netcdf.py to test_netcdf.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates/test_dms.py to test_dms.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates/test_pqr.py to test_pqr.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/lib/test_pkdtree.py to test_pkdtree.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/lib/test_augment.py to test_augment.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/lib/test_distances.py to test_distances.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/lib/test_cutil.py to test_cutil.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/lib/test_util.py to test_util.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/lib/__init__.py to __init__.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/lib/test_neighborsearch.py to test_neighborsearch.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/lib/test_nsgrid.py to test_nsgrid.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/datafiles.py to datafiles.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/test_api.py to test_api.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/dummy.py to dummy.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/visualization/test_streamlines.py to test_streamlines.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/visualization/__init__.py to __init__.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils/test_failure.py to test_failure.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils/__init__.py to __init__.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils/test_transformations.py to test_transformations.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils/test_qcprot.py to test_qcprot.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils/test_streamio.py to test_streamio.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils/test_duecredit.py to test_duecredit.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils/test_modelling.py to test_modelling.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils/test_deprecated.py to test_deprecated.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils/test_log.py to test_log.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils/test_datafiles.py to test_datafiles.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils/test_persistence.py to test_persistence.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils/test_authors.py to test_authors.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils/test_altloc.py to test_altloc.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils/test_units.py to test_units.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils/test_imports.py to test_imports.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils/test_meta.py to test_meta.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils/test_selections.py to test_selections.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils/test_nuclinfo.py to test_nuclinfo.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/coordinates/create_data.py to create_data.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology/test_txyz.py to test_txyz.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology/test_hoomdxml.py to test_hoomdxml.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology/test_pdb.py to test_pdb.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology/test_dlpoly.py to test_dlpoly.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology/test_gms.py to test_gms.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology/test_mmtf.py to test_mmtf.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology/test_topology_base.py to test_topology_base.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology/test_xyz.py to test_xyz.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology/test_mol2.py to test_mol2.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology/test_guessers.py to test_guessers.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology/test_gro.py to test_gro.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology/base.py to base.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology/test_tprparser.py to test_tprparser.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology/test_dms.py to test_dms.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology/test_minimal.py to test_minimal.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology/test_psf.py to test_psf.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology/test_gsd.py to test_gsd.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology/__init__.py to __init__.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology/test_topology_str_types.py to test_topology_str_types.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology/test_top.py to test_top.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology/test_crd.py to test_crd.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology/test_pqr.py to test_pqr.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology/test_xpdb.py to test_xpdb.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology/test_pdbqt.py to test_pdbqt.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology/test_lammpsdata.py to test_lammpsdata.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/util.py to util.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core/test_atom.py to test_atom.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core/test_group_traj_access.py to test_group_traj_access.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core/test_residuegroup.py to test_residuegroup.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core/test_requires.py to test_requires.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core/test_copying.py to test_copying.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core/__init__.py to __init__.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core/test_flag_deprecations.py to test_flag_deprecations.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core/test_universe.py to test_universe.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core/test_groups.py to test_groups.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core/test_residue.py to test_residue.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core/test_fragments.py to test_fragments.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core/test_segmentgroup.py to test_segmentgroup.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core/test_atomgroup.py to test_atomgroup.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core/test_topologyobjects.py to test_topologyobjects.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core/test_index_dtype.py to test_index_dtype.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core/test_updating_atomgroup.py to test_updating_atomgroup.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core/test_topology.py to test_topology.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core/test_atomselections.py to test_atomselections.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core/test_segment.py to test_segment.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core/test_topologyattrs.py to test_topologyattrs.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/import/__init__.py to __init__.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/import/fork_called.py to fork_called.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/import/test_import.py to test_import.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/auxiliary/base.py to base.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/auxiliary/test_xvg.py to test_xvg.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/auxiliary/__init__.py to __init__.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/tempdir.py to tempdir.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis/test_helanal.py to test_helanal.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis/test_density.py to test_density.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis/test_encore.py to test_encore.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis/test_hbonds.py to test_hbonds.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis/test_rms.py to test_rms.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis/test_dihedrals.py to test_dihedrals.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis/test_lineardensity.py to test_lineardensity.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis/test_rdf_s.py to test_rdf_s.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis/__init__.py to __init__.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis/test_diffusionmap.py to test_diffusionmap.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis/test_nuclinfo.py to test_nuclinfo.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis/test_psa.py to test_psa.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis/test_data.py to test_data.pyc byte-compiling 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/construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis/test_contacts.py to test_contacts.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis/test_gnm.py to test_gnm.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis/test_leaflet.py to test_leaflet.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis/test_waterdynamics.py to test_waterdynamics.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py to test_hydrogenbondautocorrel.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis/test_pca.py to test_pca.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis/test_align.py to test_align.pyc writing byte-compilation script '/tmp/tmph4S1at.py' /usr/local/bin/python2.7 -O /tmp/tmph4S1at.py removing /tmp/tmph4S1at.py running install_egg_info running egg_info writing requirements to MDAnalysisTests.egg-info/requires.txt writing MDAnalysisTests.egg-info/PKG-INFO writing top-level names to MDAnalysisTests.egg-info/top_level.txt writing dependency_links to MDAnalysisTests.egg-info/dependency_links.txt reading manifest file 'MDAnalysisTests.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'TODO' warning: no files found matching 'SUMMARY.txt' warning: no previously-included files matching '*~' found anywhere in distribution warning: no previously-included files matching '*.pkl' found anywhere in distribution writing manifest file 'MDAnalysisTests.egg-info/SOURCES.txt' Copying MDAnalysisTests.egg-info to /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests-0.19.2-py2.7.egg-info running install_scripts writing list of installed files to '/construction/science/py-MDAnalysisTests/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:04 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for py27-MDAnalysisTests-0.19.2_2 file sizes/checksums [663]: 0% file sizes/checksums [663]: 15% file sizes/checksums [663]: 30% file sizes/checksums [663]: 45% file sizes/checksums [663]: 60% file sizes/checksums [663]: 75% file sizes/checksums [663]: 90% file sizes/checksums [663]: 100% packing files [663]: 0% packing files [663]: 15% packing files [663]: 30% packing files [663]: 45% packing files [663]: 60% packing files [663]: 75% packing files [663]: 90% packing files [663]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:01:03 TOTAL TIME 00:02:36