------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/expat-2.2.6_1.tgz Installing /packages/All/indexinfo-0.3.1.tgz Installing /packages/All/libffi-3.2.1_3.tgz Installing /packages/All/ncurses-6.1.20190525.tgz Installing /packages/All/readline-8.0.0.tgz Installing /packages/All/gettext-runtime-0.20.1.tgz Installing /packages/All/openssl-1.0.2s,1.tgz Message from openssl-1.0.2s,1: Edit /usr/local/openssl/openssl.cnf to fit your needs. Installing /packages/All/python36-3.6.9.tgz Message from python36-3.6.9: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py36-gdbm databases/py-gdbm@py36 py36-sqlite3 databases/py-sqlite3@py36 py36-tkinter x11-toolkits/py-tkinter@py36 =========================================================================== Installing /packages/All/py36-setuptools-41.0.1.tgz SUCCEEDED 00:00:04 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- x===> Fetching all distfiles required by py36-DendroPy-4.4.0 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- x===> Fetching all distfiles required by py36-DendroPy-4.4.0 for building => SHA256 Checksum OK for DendroPy-4.4.0.tar.gz. SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- x===> Fetching all distfiles required by py36-DendroPy-4.4.0 for building ===> Extracting for py36-DendroPy-4.4.0 => SHA256 Checksum OK for DendroPy-4.4.0.tar.gz. Extracted Memory Use: 71.58M SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- x===> Patching for py36-DendroPy-4.4.0 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- x===> Configuring for py36-DendroPy-4.4.0 -setup.py: DendroPy version 4.4.0 -setup.py: using setuptools ('/usr/local/lib/python3.6/site-packages/setuptools/__init__.py') -setup.py: searching for packages -setup.py: packages identified: - dendropy - dendropy.datamodel - dendropy.mathlib - dendropy.simulate - dendropy.dataio - dendropy.utility - dendropy.legacy - dendropy.model - dendropy.interop - dendropy.calculate - dendropy.utility.libexec -setup.py: scripts identified: - applications/sumtrees/sumtrees.py - applications/sumlabels/sumlabels.py -setup.py: setuptools command extensions are available running config SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- x===> Building for py36-DendroPy-4.4.0 -setup.py: DendroPy version 4.4.0 -setup.py: using setuptools ('/usr/local/lib/python3.6/site-packages/setuptools/__init__.py') -setup.py: searching for packages -setup.py: packages identified: - dendropy - dendropy.datamodel - dendropy.mathlib - dendropy.simulate - dendropy.dataio - dendropy.utility - dendropy.legacy - dendropy.model - dendropy.interop - dendropy.calculate - dendropy.utility.libexec -setup.py: scripts identified: - applications/sumtrees/sumtrees.py - applications/sumlabels/sumlabels.py -setup.py: setuptools command extensions are available running build running build_py creating build creating build/lib creating build/lib/dendropy copying src/dendropy/__init__.py -> build/lib/dendropy copying src/dendropy/__main__.py -> build/lib/dendropy creating build/lib/dendropy/datamodel copying src/dendropy/datamodel/datasetmodel.py -> build/lib/dendropy/datamodel copying src/dendropy/datamodel/treecollectionmodel.py -> build/lib/dendropy/datamodel copying src/dendropy/datamodel/basemodel.py -> build/lib/dendropy/datamodel copying src/dendropy/datamodel/charmatrixmodel.py -> build/lib/dendropy/datamodel copying src/dendropy/datamodel/charstatemodel.py -> build/lib/dendropy/datamodel copying src/dendropy/datamodel/treemodel.py -> build/lib/dendropy/datamodel copying src/dendropy/datamodel/__init__.py -> build/lib/dendropy/datamodel copying src/dendropy/datamodel/taxonmodel.py -> build/lib/dendropy/datamodel creating build/lib/dendropy/mathlib copying src/dendropy/mathlib/mathfn.py -> build/lib/dendropy/mathlib copying src/dendropy/mathlib/__init__.py -> build/lib/dendropy/mathlib copying src/dendropy/mathlib/probability.py -> build/lib/dendropy/mathlib copying src/dendropy/mathlib/statistics.py -> build/lib/dendropy/mathlib creating build/lib/dendropy/simulate copying src/dendropy/simulate/__init__.py -> build/lib/dendropy/simulate copying src/dendropy/simulate/charsim.py -> build/lib/dendropy/simulate copying src/dendropy/simulate/popgensim.py -> build/lib/dendropy/simulate copying src/dendropy/simulate/treesim.py -> build/lib/dendropy/simulate creating build/lib/dendropy/dataio copying src/dendropy/dataio/fastawriter.py -> build/lib/dendropy/dataio copying src/dendropy/dataio/newick.py -> build/lib/dendropy/dataio copying src/dendropy/dataio/nexusyielder.py -> build/lib/dendropy/dataio copying src/dendropy/dataio/nexusprocessing.py -> build/lib/dendropy/dataio copying src/dendropy/dataio/nexmlwriter.py -> build/lib/dendropy/dataio copying src/dendropy/dataio/ioservice.py -> build/lib/dendropy/dataio copying src/dendropy/dataio/newickreader.py -> build/lib/dendropy/dataio copying src/dendropy/dataio/nexmlyielder.py -> build/lib/dendropy/dataio copying src/dendropy/dataio/phylipreader.py -> build/lib/dendropy/dataio copying src/dendropy/dataio/__init__.py -> build/lib/dendropy/dataio copying src/dendropy/dataio/nexuswriter.py -> build/lib/dendropy/dataio copying src/dendropy/dataio/newickwriter.py -> build/lib/dendropy/dataio copying src/dendropy/dataio/fastareader.py -> build/lib/dendropy/dataio copying src/dendropy/dataio/xmlprocessing.py -> build/lib/dendropy/dataio copying src/dendropy/dataio/phylipwriter.py -> build/lib/dendropy/dataio copying src/dendropy/dataio/nexusreader.py -> build/lib/dendropy/dataio copying src/dendropy/dataio/tokenizer.py -> build/lib/dendropy/dataio copying src/dendropy/dataio/newickyielder.py -> build/lib/dendropy/dataio copying src/dendropy/dataio/nexmlreader.py -> build/lib/dendropy/dataio creating build/lib/dendropy/utility copying src/dendropy/utility/messaging.py -> build/lib/dendropy/utility copying src/dendropy/utility/filesys.py -> build/lib/dendropy/utility copying src/dendropy/utility/processio.py -> build/lib/dendropy/utility copying src/dendropy/utility/terminal.py -> build/lib/dendropy/utility copying src/dendropy/utility/container.py -> build/lib/dendropy/utility copying src/dendropy/utility/debug.py -> build/lib/dendropy/utility copying src/dendropy/utility/urlio.py -> build/lib/dendropy/utility copying src/dendropy/utility/textprocessing.py -> build/lib/dendropy/utility copying src/dendropy/utility/metavar.py -> build/lib/dendropy/utility copying src/dendropy/utility/constants.py -> build/lib/dendropy/utility copying src/dendropy/utility/bibtex.py -> build/lib/dendropy/utility copying src/dendropy/utility/vcsinfo.py -> build/lib/dendropy/utility copying src/dendropy/utility/timeprocessing.py -> build/lib/dendropy/utility copying src/dendropy/utility/__init__.py -> build/lib/dendropy/utility copying src/dendropy/utility/deprecate.py -> build/lib/dendropy/utility copying src/dendropy/utility/cli.py -> build/lib/dendropy/utility copying src/dendropy/utility/bitprocessing.py -> build/lib/dendropy/utility copying src/dendropy/utility/error.py -> build/lib/dendropy/utility creating build/lib/dendropy/legacy copying src/dendropy/legacy/treesplit.py -> build/lib/dendropy/legacy copying src/dendropy/legacy/treemanip.py -> build/lib/dendropy/legacy copying src/dendropy/legacy/seqmodel.py -> build/lib/dendropy/legacy copying src/dendropy/legacy/__init__.py -> build/lib/dendropy/legacy copying src/dendropy/legacy/seqsim.py -> build/lib/dendropy/legacy copying src/dendropy/legacy/reconcile.py -> build/lib/dendropy/legacy copying src/dendropy/legacy/popgenstat.py -> build/lib/dendropy/legacy copying src/dendropy/legacy/coalescent.py -> build/lib/dendropy/legacy copying src/dendropy/legacy/popgensim.py -> build/lib/dendropy/legacy copying src/dendropy/legacy/continuous.py -> build/lib/dendropy/legacy copying src/dendropy/legacy/treecalc.py -> build/lib/dendropy/legacy copying src/dendropy/legacy/ncbi.py -> build/lib/dendropy/legacy copying src/dendropy/legacy/treesum.py -> build/lib/dendropy/legacy copying src/dendropy/legacy/treesim.py -> build/lib/dendropy/legacy creating build/lib/dendropy/model copying src/dendropy/model/birthdeath.py -> build/lib/dendropy/model copying src/dendropy/model/treeshape.py -> build/lib/dendropy/model copying src/dendropy/model/continuous.py -> build/lib/dendropy/model copying src/dendropy/model/parsimony.py -> build/lib/dendropy/model copying src/dendropy/model/protractedspeciation.py -> build/lib/dendropy/model copying src/dendropy/model/__init__.py -> build/lib/dendropy/model copying src/dendropy/model/reconcile.py -> build/lib/dendropy/model copying src/dendropy/model/multispeciescoalescent.py -> build/lib/dendropy/model copying src/dendropy/model/discrete.py -> build/lib/dendropy/model copying src/dendropy/model/coalescent.py -> build/lib/dendropy/model creating build/lib/dendropy/interop copying src/dendropy/interop/__init__.py -> build/lib/dendropy/interop copying src/dendropy/interop/biopython.py -> build/lib/dendropy/interop copying src/dendropy/interop/gbif.py -> build/lib/dendropy/interop copying src/dendropy/interop/ape.py -> build/lib/dendropy/interop copying src/dendropy/interop/paup.py -> build/lib/dendropy/interop copying src/dendropy/interop/rstats.py -> build/lib/dendropy/interop copying src/dendropy/interop/genbank.py -> build/lib/dendropy/interop copying src/dendropy/interop/seqgen.py -> build/lib/dendropy/interop copying src/dendropy/interop/raxml.py -> build/lib/dendropy/interop copying src/dendropy/interop/ete.py -> build/lib/dendropy/interop copying src/dendropy/interop/entrez.py -> build/lib/dendropy/interop copying src/dendropy/interop/muscle.py -> build/lib/dendropy/interop copying src/dendropy/interop/rspr.py -> build/lib/dendropy/interop creating build/lib/dendropy/calculate copying src/dendropy/calculate/treescore.py -> build/lib/dendropy/calculate copying src/dendropy/calculate/statistics.py -> build/lib/dendropy/calculate copying src/dendropy/calculate/probability.py -> build/lib/dendropy/calculate copying src/dendropy/calculate/profiledistance.py -> build/lib/dendropy/calculate copying src/dendropy/calculate/mathfn.py -> build/lib/dendropy/calculate copying src/dendropy/calculate/phylogeneticdistance.py -> build/lib/dendropy/calculate copying src/dendropy/calculate/combinatorics.py -> build/lib/dendropy/calculate copying src/dendropy/calculate/treecompare.py -> build/lib/dendropy/calculate copying src/dendropy/calculate/__init__.py -> build/lib/dendropy/calculate copying src/dendropy/calculate/treesum.py -> build/lib/dendropy/calculate copying src/dendropy/calculate/treemeasure.py -> build/lib/dendropy/calculate copying src/dendropy/calculate/popgenstat.py -> build/lib/dendropy/calculate creating build/lib/dendropy/utility/libexec copying src/dendropy/utility/libexec/__init__.py -> build/lib/dendropy/utility/libexec running egg_info writing src/DendroPy.egg-info/PKG-INFO writing dependency_links to src/DendroPy.egg-info/dependency_links.txt writing entry points to src/DendroPy.egg-info/entry_points.txt writing requirements to src/DendroPy.egg-info/requires.txt writing top-level names to src/DendroPy.egg-info/top_level.txt reading manifest file 'src/DendroPy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'doc/Makefile' warning: no files found matching '*' under directory 'doc/source' warning: no previously-included files matching '.DS_Store' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '.gitignore' found anywhere in distribution warning: no previously-included files matching '.gitattributes' found anywhere in distribution warning: no previously-included files matching '.idea' found anywhere in distribution warning: no previously-included files matching '__pycache__' found anywhere in distribution writing manifest file 'src/DendroPy.egg-info/SOURCES.txt' running build_scripts creating build/scripts-3.6 copying and adjusting applications/sumtrees/sumtrees.py -> build/scripts-3.6 copying and adjusting applications/sumlabels/sumlabels.py -> build/scripts-3.6 changing mode of build/scripts-3.6/sumtrees.py from 644 to 755 changing mode of build/scripts-3.6/sumlabels.py from 644 to 755 SUCCEEDED 00:00:02 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- x===> Staging for py36-DendroPy-4.4.0 ===> Generating temporary packing list -setup.py: DendroPy version 4.4.0 -setup.py: using setuptools ('/usr/local/lib/python3.6/site-packages/setuptools/__init__.py') -setup.py: searching for packages -setup.py: packages identified: - dendropy - dendropy.datamodel - dendropy.mathlib - dendropy.simulate - dendropy.dataio - dendropy.utility - dendropy.legacy - dendropy.model - dendropy.interop - dendropy.calculate - dendropy.utility.libexec -setup.py: scripts identified: - applications/sumtrees/sumtrees.py - applications/sumlabels/sumlabels.py -setup.py: setuptools command extensions are available running install running build running build_py running egg_info writing src/DendroPy.egg-info/PKG-INFO writing dependency_links to src/DendroPy.egg-info/dependency_links.txt writing entry points to src/DendroPy.egg-info/entry_points.txt writing requirements to src/DendroPy.egg-info/requires.txt writing top-level names to src/DendroPy.egg-info/top_level.txt reading manifest file 'src/DendroPy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'doc/Makefile' warning: no files found matching '*' under directory 'doc/source' warning: no previously-included files matching '.DS_Store' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '.gitignore' found anywhere in distribution warning: no previously-included files matching '.gitattributes' found anywhere in distribution warning: no previously-included files matching '.idea' found anywhere in distribution warning: no previously-included files matching '__pycache__' found anywhere in distribution writing manifest file 'src/DendroPy.egg-info/SOURCES.txt' running build_scripts running install_lib creating /construction/science/py-DendroPy/stage/usr/local/lib/python3.6 creating /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages creating /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy creating /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/dataio copying build/lib/dendropy/dataio/fastareader.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/dataio copying build/lib/dendropy/dataio/fastawriter.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/dataio copying build/lib/dendropy/dataio/nexmlreader.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/dataio copying build/lib/dendropy/dataio/nexuswriter.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/dataio copying build/lib/dendropy/dataio/newick.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/dataio copying build/lib/dendropy/dataio/ioservice.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/dataio copying build/lib/dendropy/dataio/nexusyielder.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/dataio copying build/lib/dendropy/dataio/newickyielder.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/dataio copying build/lib/dendropy/dataio/__init__.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/dataio copying build/lib/dendropy/dataio/tokenizer.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/dataio copying build/lib/dendropy/dataio/nexmlwriter.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/dataio copying build/lib/dendropy/dataio/newickreader.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/dataio copying build/lib/dendropy/dataio/xmlprocessing.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/dataio copying build/lib/dendropy/dataio/nexusprocessing.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/dataio copying build/lib/dendropy/dataio/newickwriter.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/dataio copying build/lib/dendropy/dataio/phylipreader.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/dataio copying build/lib/dendropy/dataio/nexusreader.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/dataio copying build/lib/dendropy/dataio/nexmlyielder.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/dataio copying build/lib/dendropy/dataio/phylipwriter.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/dataio creating /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/calculate copying build/lib/dendropy/calculate/treescore.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/calculate copying build/lib/dendropy/calculate/__init__.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/calculate copying build/lib/dendropy/calculate/mathfn.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/calculate copying build/lib/dendropy/calculate/profiledistance.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/calculate copying build/lib/dendropy/calculate/probability.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/calculate copying build/lib/dendropy/calculate/combinatorics.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/calculate copying build/lib/dendropy/calculate/statistics.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/calculate copying build/lib/dendropy/calculate/treemeasure.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/calculate copying build/lib/dendropy/calculate/treecompare.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/calculate copying build/lib/dendropy/calculate/treesum.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/calculate copying build/lib/dendropy/calculate/popgenstat.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/calculate copying build/lib/dendropy/calculate/phylogeneticdistance.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/calculate creating /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/model copying build/lib/dendropy/model/birthdeath.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/model copying build/lib/dendropy/model/continuous.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/model copying build/lib/dendropy/model/protractedspeciation.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/model copying build/lib/dendropy/model/multispeciescoalescent.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/model copying build/lib/dendropy/model/treeshape.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/model copying build/lib/dendropy/model/parsimony.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/model copying build/lib/dendropy/model/__init__.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/model copying build/lib/dendropy/model/reconcile.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/model copying build/lib/dendropy/model/coalescent.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/model copying build/lib/dendropy/model/discrete.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/model creating /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/mathlib copying build/lib/dendropy/mathlib/__init__.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/mathlib copying build/lib/dendropy/mathlib/probability.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/mathlib copying build/lib/dendropy/mathlib/mathfn.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/mathlib copying build/lib/dendropy/mathlib/statistics.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/mathlib creating /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/utility copying build/lib/dendropy/utility/urlio.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/utility copying build/lib/dendropy/utility/error.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/utility copying build/lib/dendropy/utility/metavar.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/utility copying build/lib/dendropy/utility/processio.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/utility creating /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/utility/libexec copying build/lib/dendropy/utility/libexec/__init__.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/utility/libexec copying build/lib/dendropy/utility/container.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/utility copying build/lib/dendropy/utility/messaging.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/utility copying build/lib/dendropy/utility/__init__.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/utility copying build/lib/dendropy/utility/deprecate.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/utility copying build/lib/dendropy/utility/terminal.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/utility copying build/lib/dendropy/utility/cli.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/utility copying build/lib/dendropy/utility/bibtex.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/utility copying build/lib/dendropy/utility/timeprocessing.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/utility copying build/lib/dendropy/utility/vcsinfo.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/utility copying build/lib/dendropy/utility/bitprocessing.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/utility copying build/lib/dendropy/utility/constants.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/utility copying build/lib/dendropy/utility/debug.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/utility copying build/lib/dendropy/utility/filesys.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/utility copying build/lib/dendropy/utility/textprocessing.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/utility creating /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/interop copying build/lib/dendropy/interop/rstats.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/interop copying build/lib/dendropy/interop/raxml.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/interop copying build/lib/dendropy/interop/biopython.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/interop copying build/lib/dendropy/interop/entrez.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/interop copying build/lib/dendropy/interop/ete.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/interop copying build/lib/dendropy/interop/genbank.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/interop copying build/lib/dendropy/interop/paup.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/interop copying build/lib/dendropy/interop/__init__.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/interop copying build/lib/dendropy/interop/gbif.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/interop copying build/lib/dendropy/interop/ape.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/interop copying build/lib/dendropy/interop/muscle.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/interop copying build/lib/dendropy/interop/rspr.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/interop copying build/lib/dendropy/interop/seqgen.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/interop copying build/lib/dendropy/__init__.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy creating /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/datamodel copying build/lib/dendropy/datamodel/charmatrixmodel.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/datamodel copying build/lib/dendropy/datamodel/charstatemodel.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/datamodel copying build/lib/dendropy/datamodel/basemodel.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/datamodel copying build/lib/dendropy/datamodel/treecollectionmodel.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/datamodel copying build/lib/dendropy/datamodel/treemodel.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/datamodel copying build/lib/dendropy/datamodel/taxonmodel.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/datamodel copying build/lib/dendropy/datamodel/datasetmodel.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/datamodel copying build/lib/dendropy/datamodel/__init__.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/datamodel creating /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/simulate copying build/lib/dendropy/simulate/charsim.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/simulate copying build/lib/dendropy/simulate/popgensim.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/simulate copying build/lib/dendropy/simulate/__init__.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/simulate copying build/lib/dendropy/simulate/treesim.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/simulate creating /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/legacy copying build/lib/dendropy/legacy/treecalc.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/legacy copying build/lib/dendropy/legacy/treesim.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/legacy copying build/lib/dendropy/legacy/__init__.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/legacy copying build/lib/dendropy/legacy/continuous.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/legacy copying build/lib/dendropy/legacy/seqmodel.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/legacy copying build/lib/dendropy/legacy/ncbi.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/legacy copying build/lib/dendropy/legacy/treemanip.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/legacy copying build/lib/dendropy/legacy/treesplit.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/legacy copying build/lib/dendropy/legacy/popgenstat.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/legacy copying build/lib/dendropy/legacy/coalescent.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/legacy copying build/lib/dendropy/legacy/treesum.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/legacy copying build/lib/dendropy/legacy/seqsim.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/legacy copying build/lib/dendropy/legacy/popgensim.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/legacy copying build/lib/dendropy/legacy/reconcile.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/legacy copying build/lib/dendropy/__main__.py -> /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/dataio/fastareader.py to fastareader.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/dataio/fastawriter.py to fastawriter.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/dataio/nexmlreader.py to nexmlreader.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/dataio/nexuswriter.py to nexuswriter.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/dataio/newick.py to newick.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/dataio/ioservice.py to ioservice.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/dataio/nexusyielder.py to nexusyielder.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/dataio/newickyielder.py to newickyielder.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/dataio/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/dataio/tokenizer.py to tokenizer.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/dataio/nexmlwriter.py to nexmlwriter.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/dataio/newickreader.py to newickreader.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/dataio/xmlprocessing.py to xmlprocessing.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/dataio/nexusprocessing.py to nexusprocessing.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/dataio/newickwriter.py to newickwriter.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/dataio/phylipreader.py to phylipreader.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/dataio/nexusreader.py to nexusreader.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/dataio/nexmlyielder.py to nexmlyielder.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/dataio/phylipwriter.py to phylipwriter.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/calculate/treescore.py to treescore.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/calculate/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/calculate/mathfn.py to mathfn.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/calculate/profiledistance.py to profiledistance.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/calculate/probability.py to probability.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/calculate/combinatorics.py to combinatorics.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/calculate/statistics.py to statistics.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/calculate/treemeasure.py to treemeasure.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/calculate/treecompare.py to treecompare.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/calculate/treesum.py to treesum.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/calculate/popgenstat.py to popgenstat.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/calculate/phylogeneticdistance.py to phylogeneticdistance.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/model/birthdeath.py to birthdeath.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/model/continuous.py to continuous.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/model/protractedspeciation.py to protractedspeciation.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/model/multispeciescoalescent.py to multispeciescoalescent.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/model/treeshape.py to treeshape.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/model/parsimony.py to parsimony.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/model/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/model/reconcile.py to reconcile.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/model/coalescent.py to coalescent.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/model/discrete.py to discrete.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/mathlib/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/mathlib/probability.py to probability.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/mathlib/mathfn.py to mathfn.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/mathlib/statistics.py to statistics.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/utility/urlio.py to urlio.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/utility/error.py to error.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/utility/metavar.py to metavar.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/utility/processio.py to processio.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/utility/libexec/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/utility/container.py to container.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/utility/messaging.py to messaging.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/utility/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/utility/deprecate.py to deprecate.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/utility/terminal.py to terminal.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/utility/cli.py to cli.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/utility/bibtex.py to bibtex.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/utility/timeprocessing.py to timeprocessing.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/utility/vcsinfo.py to vcsinfo.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/utility/bitprocessing.py to bitprocessing.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/utility/constants.py to constants.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/utility/debug.py to debug.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/utility/filesys.py to filesys.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/utility/textprocessing.py to textprocessing.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/interop/rstats.py to rstats.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/interop/raxml.py to raxml.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/interop/biopython.py to biopython.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/interop/entrez.py to entrez.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/interop/ete.py to ete.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/interop/genbank.py to genbank.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/interop/paup.py to paup.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/interop/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/interop/gbif.py to gbif.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/interop/ape.py to ape.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/interop/muscle.py to muscle.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/interop/rspr.py to rspr.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/interop/seqgen.py to seqgen.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/datamodel/charmatrixmodel.py to charmatrixmodel.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/datamodel/charstatemodel.py to charstatemodel.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/datamodel/basemodel.py to basemodel.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/datamodel/treecollectionmodel.py to treecollectionmodel.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/datamodel/treemodel.py to treemodel.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/datamodel/taxonmodel.py to taxonmodel.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/datamodel/datasetmodel.py to datasetmodel.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/datamodel/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/simulate/charsim.py to charsim.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/simulate/popgensim.py to popgensim.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/simulate/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/simulate/treesim.py to treesim.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/legacy/treecalc.py to treecalc.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/legacy/treesim.py to treesim.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/legacy/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/legacy/continuous.py to continuous.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/legacy/seqmodel.py to seqmodel.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/legacy/ncbi.py to ncbi.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/legacy/treemanip.py to treemanip.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/legacy/treesplit.py to treesplit.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/legacy/popgenstat.py to popgenstat.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/legacy/coalescent.py to coalescent.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/legacy/treesum.py to treesum.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/legacy/seqsim.py to seqsim.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/legacy/popgensim.py to popgensim.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/legacy/reconcile.py to reconcile.cpython-36.pyc byte-compiling /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/dendropy/__main__.py to __main__.cpython-36.pyc writing byte-compilation script '/tmp/tmps76ez_lz.py' /usr/local/bin/python3.6 /tmp/tmps76ez_lz.py removing /tmp/tmps76ez_lz.py running install_egg_info Copying src/DendroPy.egg-info to /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/DendroPy-4.4.0-py3.6.egg-info running install_scripts copying build/scripts-3.6/sumtrees.py -> /construction/science/py-DendroPy/stage/usr/local/bin copying build/scripts-3.6/sumlabels.py -> /construction/science/py-DendroPy/stage/usr/local/bin changing mode of /construction/science/py-DendroPy/stage/usr/local/bin/sumtrees.py to 755 changing mode of /construction/science/py-DendroPy/stage/usr/local/bin/sumlabels.py to 755 writing list of installed files to '/construction/science/py-DendroPy/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) if [ -d "/construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/DendroPy-4.4.0-py3.6.egg-info" ]; then /bin/ls /construction/science/py-DendroPy/stage/usr/local/lib/python3.6/site-packages/DendroPy-4.4.0-py3.6.egg-info | while read f; do echo lib/python3.6/site-packages/DendroPy-4.4.0-py3.6.egg-info/${f} >> /construction/science/py-DendroPy/.PLIST.mktmp; done; fi; ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:04 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- x====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- x===> Building package for py36-DendroPy-4.4.0 file sizes/checksums [324]: 0% file sizes/checksums [324]: 30% file sizes/checksums [324]: 61% file sizes/checksums [324]: 92% file sizes/checksums [324]: 100% packing files [324]: 0% packing files [324]: 30% packing files [324]: 61% packing files [324]: 92% packing files [324]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:01 TOTAL TIME 00:00:14