------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/gmp-6.2.0.txz pkg: Cannot runscript POST-INSTALL:Bad file descriptor Installing /packages/All/mpfr-4.0.2.txz pkg: Cannot runscript POST-INSTALL:Bad file descriptor Installing /packages/All/mpc-1.1.0_2.txz pkg: Cannot runscript POST-INSTALL:Bad file descriptor UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/gettext-runtime-0.20.1.txz pkg: Cannot runscript POST-INSTALL:Bad file descriptor Installing /packages/All/binutils-2.33.1_2,1.txz pkg: Cannot runscript POST-INSTALL:Bad file descriptor Installing /packages/All/gcc8-8.4.0.txz pkg: Cannot runscript POST-INSTALL:Bad file descriptor ===== Message from gcc8-8.4.0: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/gmake-4.2.1_3.txz pkg: Cannot runscript POST-INSTALL:Bad file descriptor UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/pciids-20200222.txz Installing /packages/All/libpciaccess-0.16.txz pkg: Cannot runscript POST-INSTALL:Bad file descriptor Installing /packages/All/libxml2-2.9.10.txz pkg: Cannot runscript POST-INSTALL:Bad file descriptor Installing /packages/All/hwloc-1.11.11.txz pkg: Cannot runscript POST-INSTALL:Bad file descriptor Installing /packages/All/perl5-5.30.1.txz pkg: Cannot runscript POST-INSTALL:Bad file descriptor ===== Message from perl5-5.30.1: -- The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. Installing /packages/All/mpich-3.2.1_6.txz pkg: Cannot runscript POST-INSTALL:Bad file descriptor ===== Message from mpich-3.2.1_6: -- ===> NOTICE: The mpich port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port UNFLAVORED devel/binutils -> use devel/binutils@native UNFLAVORED devel/binutils -> use devel/binutils@native SUCCEEDED 00:00:24 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> mdynamix-5.2.8_4 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> mdynamix-5.2.8_4 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by mdynamix-5.2.8_4 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> mdynamix-5.2.8_4 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by mdynamix-5.2.8_4 for building => SHA256 Checksum OK for md528.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> mdynamix-5.2.8_4 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by mdynamix-5.2.8_4 for building ===> Extracting for mdynamix-5.2.8_4 ===> mdynamix-5.2.8_4 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by mdynamix-5.2.8_4 for building => SHA256 Checksum OK for md528.tar.gz. Extracted Memory Use: 11.59M SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for mdynamix-5.2.8_4 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> mdynamix-5.2.8_4 depends on executable: gfortran8 - found ===> mdynamix-5.2.8_4 depends on executable: gmake - found ===> mdynamix-5.2.8_4 depends on file: /usr/local/bin/as - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- ===> mdynamix-5.2.8_4 depends on shared library: libmpich.so - found (/usr/local/lib/libmpich.so) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> mdynamix-5.2.8_4 depends on executable: gfortran8 - found ===> mdynamix-5.2.8_4 depends on executable: gmake - found ===> mdynamix-5.2.8_4 depends on file: /usr/local/bin/as - found ===> mdynamix-5.2.8_4 depends on shared library: libmpich.so - found (/usr/local/lib/libmpich.so) ===> Configuring for mdynamix-5.2.8_4 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for mdynamix-5.2.8_4 gmake[2]: Entering directory '/construction/science/mdynamix/md528' make -f Makefile.gfortran make -f Makefile.mpi make[3]: Entering directory '/construction/science/mdynamix/md528' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. gfortran -O -Wl,-rpath=/usr/local/lib/gcc8 -ffast-math -c -o aver.o aver.f make[3]: Entering directory '/construction/science/mdynamix/md528' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. mpif77 -O -Wl,-rpath=/usr/local/lib/gcc8 -ffast-math -c -o aver.o aver.f gfortran -O -Wl,-rpath=/usr/local/lib/gcc8 -ffast-math -c -o cpu_intel.o cpu_intel.f gfortran -O -Wl,-rpath=/usr/local/lib/gcc8 -ffast-math -c -o input.o input.f mpif77 -O -Wl,-rpath=/usr/local/lib/gcc8 -ffast-math -c -o cpu_mpi.o cpu_mpi.f mpif77 -O -Wl,-rpath=/usr/local/lib/gcc8 -ffast-math -c -o input.o input.f gfortran -O -Wl,-rpath=/usr/local/lib/gcc8 -ffast-math -c -o forces.o forces.f mpif77 -O -Wl,-rpath=/usr/local/lib/gcc8 -ffast-math -c -o forces.o forces.f gfortran -O -Wl,-rpath=/usr/local/lib/gcc8 -ffast-math -c -o main.o main.f mpif77 -O -Wl,-rpath=/usr/local/lib/gcc8 -ffast-math -c -o main.o main.f gfortran -O -Wl,-rpath=/usr/local/lib/gcc8 -ffast-math -c -o mdee.o mdee.f mpif77 -O -Wl,-rpath=/usr/local/lib/gcc8 -ffast-math -c -o mdee.o mdee.f gfortran -O -Wl,-rpath=/usr/local/lib/gcc8 -ffast-math -c -o mdstep.o mdstep.f mpif77 -O -Wl,-rpath=/usr/local/lib/gcc8 -ffast-math -c -o mdstep.o mdstep.f gfortran -O -Wl,-rpath=/usr/local/lib/gcc8 -ffast-math -c -o restart.o restart.f mpif77 -O -Wl,-rpath=/usr/local/lib/gcc8 -ffast-math -c -o restart.o restart.f gfortran -O -Wl,-rpath=/usr/local/lib/gcc8 -ffast-math -c -o scalar.o scalar.f gfortran -O -Wl,-rpath=/usr/local/lib/gcc8 -ffast-math -c -o service.o service.f mpif77 -O -Wl,-rpath=/usr/local/lib/gcc8 -ffast-math -c -o mpi.o mpi.f mpif.h:552:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:553:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:558:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:561:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:552:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:553:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:558:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:561:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:552:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:553:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:558:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:561:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:552:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:553:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:558:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:561:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:552:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:553:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:558:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:561:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:552:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:553:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:558:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:561:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement gfortran -O -Wl,-rpath=/usr/local/lib/gcc8 -ffast-math -c -o setup.o setup.f mpif77 -O -Wl,-rpath=/usr/local/lib/gcc8 -ffast-math -c -o pimd.o pimd.f mpif.h:552:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:553:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:558:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:561:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:552:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:553:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:558:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:561:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:552:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:553:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:558:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:561:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement gfortran -O -Wl,-rpath=/usr/local/lib/gcc8 -ffast-math -c -o util.o util.f mpif.h:552:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:553:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:558:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:561:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:552:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:553:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:558:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:561:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:552:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:553:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:558:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:561:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement gfortran -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -o md aver.o cpu_intel.o input.o forces.o main.o mdee.o mdstep.o restart.o scalar.o service.o setup.o util.o /usr/local/bin/ld: /usr/lib/libc.so: .dynsym local symbol at index 8 (>= sh_info of 6) make[3]: Leaving directory '/construction/science/mdynamix/md528' mpif77 -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -o mdp aver.o cpu_mpi.o input.o forces.o main.o mdee.o mdstep.o restart.o mpi.o pimd.o service.o setup.o util.o /usr/local/bin/ld: /usr/lib/libc.so: .dynsym local symbol at index 8 (>= sh_info of 6) make[3]: Leaving directory '/construction/science/mdynamix/md528' gmake[2]: Leaving directory '/construction/science/mdynamix/md528' SUCCEEDED 00:00:17 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> mdynamix-5.2.8_4 depends on executable: gfortran8 - found SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for mdynamix-5.2.8_4 ===> mdynamix-5.2.8_4 depends on executable: gfortran8 - found ===> Generating temporary packing list install -s -m 555 /construction/science/mdynamix/md528/md /construction/science/mdynamix/stage/usr/local/bin install -s -m 555 /construction/science/mdynamix/md528/mdp /construction/science/mdynamix/stage/usr/local/bin ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for mdynamix-5.2.8_4 file sizes/checksums [2]: 0% file sizes/checksums [2]: 100% packing files [2]: 0% packing files [2]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:02 TOTAL TIME 00:00:46