------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/gmp-6.2.0.txz pkg: Cannot runscript POST-INSTALL:Bad file descriptor Installing /packages/All/mpfr-4.0.2.txz pkg: Cannot runscript POST-INSTALL:Bad file descriptor Installing /packages/All/mpc-1.1.0_2.txz pkg: Cannot runscript POST-INSTALL:Bad file descriptor UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/gettext-runtime-0.20.1.txz pkg: Cannot runscript POST-INSTALL:Bad file descriptor Installing /packages/All/binutils-2.33.1_2,1.txz pkg: Cannot runscript POST-INSTALL:Bad file descriptor Installing /packages/All/gcc8-8.4.0.txz pkg: Cannot runscript POST-INSTALL:Bad file descriptor ===== Message from gcc8-8.4.0: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/gmake-4.2.1_3.txz pkg: Cannot runscript POST-INSTALL:Bad file descriptor UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/perl5-5.30.1.txz pkg: Cannot runscript POST-INSTALL:Bad file descriptor ===== Message from perl5-5.30.1: -- The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. Installing /packages/All/libxc-4.2.3_3.txz pkg: Cannot runscript POST-INSTALL:Bad file descriptor UNFLAVORED devel/binutils -> use devel/binutils@native UNFLAVORED devel/binutils -> use devel/binutils@native SUCCEEDED 00:00:31 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> libgridxc-0.8.5_2 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> libgridxc-0.8.5_2 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by libgridxc-0.8.5_2 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> libgridxc-0.8.5_2 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by libgridxc-0.8.5_2 for building => SHA256 Checksum OK for libgridxc-0.8.5.tgz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> libgridxc-0.8.5_2 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by libgridxc-0.8.5_2 for building ===> Extracting for libgridxc-0.8.5_2 ===> libgridxc-0.8.5_2 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by libgridxc-0.8.5_2 for building => SHA256 Checksum OK for libgridxc-0.8.5.tgz. Extracted Memory Use: 1.26M SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for libgridxc-0.8.5_2 ===> Applying ports patches for libgridxc-0.8.5_2 /usr/bin/env WRKSRC=/construction/science/libgridxc/libgridxc-0.8.5/src REWARNFILE=/construction/science/libgridxc/reinplace_warnings.txt /xports/Tools/scripts/sed_checked.sh -e "/FC_SERIAL=/s@gfortran.*@gfortran8@g" /construction/science/libgridxc/libgridxc-0.8.5/src/../build/fortran.mk SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> libgridxc-0.8.5_2 depends on executable: gfortran8 - found ===> libgridxc-0.8.5_2 depends on executable: gmake - found ===> libgridxc-0.8.5_2 depends on file: /usr/local/bin/as - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- ===> libgridxc-0.8.5_2 depends on shared library: libxc.so - found (/usr/local/lib/libxc.so) SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> libgridxc-0.8.5_2 depends on executable: gfortran8 - found ===> libgridxc-0.8.5_2 depends on executable: gmake - found ===> libgridxc-0.8.5_2 depends on file: /usr/local/bin/as - found ===> libgridxc-0.8.5_2 depends on shared library: libxc.so - found (/usr/local/lib/libxc.so) ===> Configuring for libgridxc-0.8.5_2 *** Compilation setup done. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for libgridxc-0.8.5_2 ==> make WITH_LIBXC=1 WITH_MPI= PREFIX=/construction/science/libgridxc/tmp_stage/usr/local/serial make[2]: Entering directory '/construction/science/libgridxc/libgridxc-0.8.5/build' rm -f *.o *.*d *.a gridxc.mk rm -rf lib include (cd MPI_instr ; make \ "VPATH=/construction/science/libgridxc/libgridxc-0.8.5/src/MPI_instr" clean) make[3]: Entering directory '/construction/science/libgridxc/libgridxc-0.8.5/build/MPI_instr' make[3]: Leaving directory '/construction/science/libgridxc/libgridxc-0.8.5/build/MPI_instr' make[2]: Leaving directory '/construction/science/libgridxc/libgridxc-0.8.5/build' make[2]: Entering directory '/construction/science/libgridxc/libgridxc-0.8.5/build' rm -f *.o *.*d *.a gridxc.mk rm -rf lib include (cd MPI_instr ; make \ "VPATH=/construction/science/libgridxc/libgridxc-0.8.5/src/MPI_instr" clean) make[3]: Entering directory '/construction/science/libgridxc/libgridxc-0.8.5/build/MPI_instr' make[3]: Leaving directory '/construction/science/libgridxc/libgridxc-0.8.5/build/MPI_instr' sed 's/GRIDXC_USES_LIBXC=0/GRIDXC_USES_LIBXC=1/g' gridxc.mk.in > gridxc.mk gfortran8 -c -O2 -fPIC -fimplicit-none -I /usr/local/include -DLIBXC /construction/science/libgridxc/libgridxc-0.8.5/src/alloc.F90 gfortran8 -c -O2 -fPIC -fimplicit-none -I /usr/local/include -DLIBXC /construction/science/libgridxc/libgridxc-0.8.5/src/precision.F90 gfortran8 -c -O2 -fPIC -fimplicit-none -I /usr/local/include -DLIBXC /construction/science/libgridxc/libgridxc-0.8.5/src/sys.F90 gfortran8 -c -O2 -fPIC -fimplicit-none -I /usr/local/include -DLIBXC /construction/science/libgridxc/libgridxc-0.8.5/src/bessph.F90 gfortran8 -c -O2 -fPIC -fimplicit-none -I /usr/local/include -DLIBXC /construction/science/libgridxc/libgridxc-0.8.5/src/cellsubs.F90 gfortran8 -c -O2 -fPIC -fimplicit-none -I /usr/local/include -DLIBXC /construction/science/libgridxc/libgridxc-0.8.5/src/sorting.F90 gfortran8 -c -O2 -fPIC -fimplicit-none -I /usr/local/include -DLIBXC /construction/science/libgridxc/libgridxc-0.8.5/src/minvec.F90 gfortran8 -c -O2 -fPIC -fimplicit-none -I /usr/local/include -DLIBXC /construction/science/libgridxc/libgridxc-0.8.5/src/chkgmx.F90 gfortran8 -c -O2 -fPIC -fimplicit-none -I /usr/local/include /construction/science/libgridxc/libgridxc-0.8.5/src/interpolation.f90 gfortran8 -c -O2 -fPIC -fimplicit-none -I /usr/local/include -DLIBXC /construction/science/libgridxc/libgridxc-0.8.5/src/m_io.F90 gfortran8 -c -O2 -fPIC -fimplicit-none -I /usr/local/include -DLIBXC /construction/science/libgridxc/libgridxc-0.8.5/src/array.F90 gfortran8 -c -O2 -fPIC -fimplicit-none -I /usr/local/include -DLIBXC /construction/science/libgridxc/libgridxc-0.8.5/src/gridxc_config.F90 gfortran8 -c -O2 -fPIC -fimplicit-none -I /usr/local/include -DLIBXC /construction/science/libgridxc/libgridxc-0.8.5/src/moreParallelSubs.F90 gfortran8 -c -O2 -fPIC -fimplicit-none -I /usr/local/include -DLIBXC /construction/science/libgridxc/libgridxc-0.8.5/src/m_fft_gpfa.F gfortran8 -c -O2 -fPIC -fimplicit-none -I /usr/local/include /construction/science/libgridxc/libgridxc-0.8.5/src/m_walltime.f90 gfortran8 -c -O2 -fPIC -fimplicit-none -I /usr/local/include -DLIBXC /construction/science/libgridxc/libgridxc-0.8.5/src/radfft.F90 gfortran8 -c -O2 -fPIC -fimplicit-none -I /usr/local/include -DLIBXC /construction/science/libgridxc/libgridxc-0.8.5/src/debugxc.F90 gfortran8 -c -O2 -fPIC -fimplicit-none -I /usr/local/include -DLIBXC /construction/science/libgridxc/libgridxc-0.8.5/src/am05.F90 gfortran8 -c -O2 -fPIC -fimplicit-none -I /usr/local/include -DLIBXC /construction/science/libgridxc/libgridxc-0.8.5/src/ldaxc.F90 gfortran8 -c -O2 -fPIC -fimplicit-none -I /usr/local/include -DLIBXC /construction/science/libgridxc/libgridxc-0.8.5/src/ggaxc.F90 gfortran8 -c -O2 -fPIC -fimplicit-none -I /usr/local/include /construction/science/libgridxc/libgridxc-0.8.5/src/mesh1d.f90 gfortran8 -c -O2 -fPIC -fimplicit-none -I /usr/local/include -DLIBXC /construction/science/libgridxc/libgridxc-0.8.5/src/vv_vdwxc.F90 gfortran8 -c -O2 -fPIC -fimplicit-none -I /usr/local/include -DLIBXC /construction/science/libgridxc/libgridxc-0.8.5/src/vdwxc.F90 gfortran8 -c -O2 -fPIC -fimplicit-none -I /usr/local/include -DLIBXC /construction/science/libgridxc/libgridxc-0.8.5/src/xcmod.F90 gfortran8 -c -O2 -fPIC -fimplicit-none -I /usr/local/include -DLIBXC /construction/science/libgridxc/libgridxc-0.8.5/src/atomxc.F90 gfortran8 -c -O2 -fPIC -fimplicit-none -I /usr/local/include -DLIBXC /construction/science/libgridxc/libgridxc-0.8.5/src/mesh3d.F90 gfortran8 -c -O2 -fPIC -fimplicit-none -I /usr/local/include -DLIBXC /construction/science/libgridxc/libgridxc-0.8.5/src/fft3d.F90 gfortran8 -c -O2 -fPIC -fimplicit-none -I /usr/local/include -DLIBXC /construction/science/libgridxc/libgridxc-0.8.5/src/fftr.F90 gfortran8 -c -O2 -fPIC -fimplicit-none -I /usr/local/include -DLIBXC /construction/science/libgridxc/libgridxc-0.8.5/src/cellxc.F90 gfortran8 -c -O2 -fPIC -fimplicit-none -I /usr/local/include -DLIBXC /construction/science/libgridxc/libgridxc-0.8.5/src/gridxc.F90 Prefix: /construction/science/libgridxc/tmp_stage/usr/local/serial mkdir -p lib mkdir -p include cp -p gridxc.mod gridxc_config.mod m_atomxc.mod m_cellxc.mod xcmod.mod m_ldaxc.mod m_ggaxc.mod m_fft_gpfa.mod debugxc.mod mesh3d.mod include/ cp -p libGridXC.so lib/ mkdir -p /construction/science/libgridxc/tmp_stage/usr/local/lib mkdir -p /construction/science/libgridxc/tmp_stage/usr/local/include cp -p gridxc.mod gridxc_config.mod m_atomxc.mod m_cellxc.mod xcmod.mod m_ldaxc.mod m_ggaxc.mod m_fft_gpfa.mod debugxc.mod mesh3d.mod /construction/science/libgridxc/tmp_stage/usr/local/include/ cp -p libGridXC.so /construction/science/libgridxc/tmp_stage/usr/local/lib cp -p gridxc.mk libxc.mk /construction/science/libgridxc/tmp_stage/usr/local make[2]: Leaving directory '/construction/science/libgridxc/libgridxc-0.8.5/build' SUCCEEDED 00:00:33 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> libgridxc-0.8.5_2 depends on executable: gfortran8 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for libgridxc-0.8.5_2 ===> libgridxc-0.8.5_2 depends on executable: gfortran8 - found ===> Generating temporary packing list cd /construction/science/libgridxc/tmp_stage && /bin/sh -c '(/usr/bin/find -Ed $1 $3 | /usr/bin/cpio -dumpl $2 >/dev/null 2>&1) && /usr/bin/find -Ed $1 $3 \( -type d -exec /bin/sh -c '\''cd '\''$2'\'' && chmod 755 "$@"'\'' . {} + -o -type f -exec /bin/sh -c '\''cd '\''$2'\'' && chmod 0644 "$@"'\'' . {} + \)' COPYTREE_SHARE . /construction/science/libgridxc/stage /bin/mkdir -p /construction/science/libgridxc/stage/usr/local/share/mk && /bin/mv /construction/science/libgridxc/stage/usr/local/*.mk /construction/science/libgridxc/stage/usr/local/share/mk ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: 'lib/libGridXC.so' is not stripped consider trying INSTALL_TARGET=install-strip or using ${STRIP_CMD} Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for libgridxc-0.8.5_2 file sizes/checksums [13]: 0% file sizes/checksums [13]: 100% packing files [13]: 0% packing files [13]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:01 TOTAL TIME 00:01:09