------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/libxml2-2.9.10.txz Installing /packages/All/expat-2.2.8.txz Installing /packages/All/freetype2-2.10.1.txz ===== Message from freetype2-2.10.1: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/site/index.html, if documentation was installed). Installing /packages/All/fontconfig-2.12.6,1.txz Running fc-cache to build fontconfig cache... /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory fc-cache: succeeded Installing /packages/All/png-1.6.37.txz Installing /packages/All/jbigkit-2.1_1.txz Installing /packages/All/jpeg-turbo-2.0.4.txz Installing /packages/All/tiff-4.1.0.txz Installing /packages/All/libmspack-0.10.1.txz Installing /packages/All/ncurses-6.1.20190525.txz Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/readline-8.0.4.txz Installing /packages/All/perl5-5.30.1.txz ===== Message from perl5-5.30.1: -- The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. Installing /packages/All/hunspell-1.7.0_2.txz Installing /packages/All/pcre-8.43_2.txz Installing /packages/All/libffi-3.2.1_3.txz Installing /packages/All/gettext-runtime-0.20.1.txz Installing /packages/All/libiconv-1.14_11.txz Installing /packages/All/openssl-1.1.1d,1.txz Installing /packages/All/python37-3.7.6.txz ===== Message from python37-3.7.6: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py37-gdbm databases/py-gdbm@py37 py37-sqlite3 databases/py-sqlite3@py37 py37-tkinter x11-toolkits/py-tkinter@py37 Installing /packages/All/glib-2.56.3_7,1.txz No schema files found: doing nothing. Installing /packages/All/enchant2-2.2.3_4.txz Installing /packages/All/fribidi-0.19.7.txz Installing /packages/All/giflib-5.2.1.txz Installing /packages/All/webp-1.1.0.txz Installing /packages/All/libgpg-error-1.37.txz Installing /packages/All/libgcrypt-1.8.5.txz Installing /packages/All/libsecret-0.18.6_1.txz Installing /packages/All/shared-mime-info-1.10_2.txz Installing /packages/All/libXau-1.0.9.txz Installing /packages/All/libpthread-stubs-0.4.txz Installing /packages/All/xorgproto-2019.2.txz Installing /packages/All/libXdmcp-1.1.3.txz Installing /packages/All/libxcb-1.13.1.txz Installing /packages/All/libX11-1.6.9,1.txz Installing /packages/All/gdk-pixbuf2-2.40.0.txz Installing /packages/All/libnotify-0.7.8.txz Installing /packages/All/hyphen-2.8.8.txz Installing /packages/All/icu-66.1,1.txz Installing /packages/All/lcms2-2.9.txz Installing /packages/All/openjpeg-2.3.1.txz Installing /packages/All/graphite2-1.3.13_1.txz Installing /packages/All/harfbuzz-2.6.4.txz Installing /packages/All/harfbuzz-icu-2.6.4_1.txz Installing /packages/All/sqlite3-3.30.1_1,1.txz Installing /packages/All/gmp-6.2.0.txz Installing /packages/All/nettle-3.5.1_1.txz Installing /packages/All/libtasn1-4.15.0.txz Installing /packages/All/libunistring-0.9.10_1.txz Installing /packages/All/libidn2-2.3.0_1.txz Installing /packages/All/ca_root_nss-3.51.txz ===== Message from ca_root_nss-3.51: -- FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem Installing /packages/All/p11-kit-0.23.18.1.txz Installing /packages/All/tpm-emulator-0.7.4_2.txz ===> Creating groups. Creating group '_tss' with gid '601'. ===> Creating users Creating user '_tss' with uid '601'. Installing /packages/All/trousers-0.3.14_2.txz ===> Creating groups. Using existing group '_tss'. ===> Creating users Using existing user '_tss'. ===== Message from trousers-0.3.14_2: -- To run tcsd automatically, add the following line to /etc/rc.conf: tcsd_enable="YES" You might want to edit /usr/local/etc/tcsd.conf to reflect your setup. If you want to use tcsd with software TPM emulator, use the following configuration in /etc/rc.conf: tcsd_enable="YES" tcsd_mode="emulator" tpmd_enable="YES" To use TPM, add your_account to '_tss' group like following: # pw groupmod _tss -m your_account Installing /packages/All/gnutls-3.6.12.txz Installing /packages/All/libICE-1.0.10,1.txz Installing /packages/All/libSM-1.2.3,1.txz Installing /packages/All/dbus-1.12.16.txz ===> Creating groups. Creating group 'messagebus' with gid '556'. ===> Creating users Creating user 'messagebus' with uid '556'. Installing /packages/All/libproxy-0.4.15.txz Installing /packages/All/gsettings-desktop-schemas-3.28.1.txz Installing /packages/All/glib-networking-2.56.1_2.txz Installing /packages/All/libsoup-2.62.3.txz Installing /packages/All/brotli-1.0.7_2,1.txz Installing /packages/All/woff2-1.0.2_4.txz Installing /packages/All/wayland-1.16.0.txz Installing /packages/All/xkeyboard-config-2.27.txz Installing /packages/All/libxkbcommon-0.10.0.txz Installing /packages/All/pciids-20200222.txz Installing /packages/All/libpciaccess-0.16.txz Installing /packages/All/libdrm-2.4.100.txz Installing /packages/All/libelf-0.8.13_3.txz Installing /packages/All/libXfixes-5.0.3_2.txz Installing /packages/All/libXdamage-1.1.5.txz Installing /packages/All/libXext-1.3.4,1.txz Installing /packages/All/libXrender-0.9.10_2.txz Installing /packages/All/libXrandr-1.5.2.txz Installing /packages/All/libxshmfence-1.3.txz Installing /packages/All/libXxf86vm-1.1.4_3.txz Installing /packages/All/mesa-libs-18.3.2_4.txz Installing /packages/All/libwpe-1.4.0.1.txz Installing /packages/All/wpebackend-fdo-1.4.1.txz Installing /packages/All/atk-2.28.1.txz Installing /packages/All/pixman-0.38.4.txz Installing /packages/All/cairo-1.16.0,2.txz Installing /packages/All/libepoxy-1.5.2.txz Installing /packages/All/nspr-4.25.txz Installing /packages/All/spidermonkey60-60.9.0_2.txz Installing /packages/All/polkit-0.116.txz ===> Creating groups. Creating group 'polkitd' with gid '565'. ===> Creating users Creating user 'polkitd' with uid '565'. Installing /packages/All/libXinerama-1.1.4_2,1.txz Installing /packages/All/libXScrnSaver-1.2.3_2.txz Installing /packages/All/argyllcms-1.9.2_5.txz Installing /packages/All/colord-1.3.5.txz ===> Creating groups. Creating group 'colord' with gid '970'. ===> Creating users Creating user 'colord' with uid '970'. Installing /packages/All/libdaemon-0.14_1.txz Installing /packages/All/dbus-glib-0.110.txz Installing /packages/All/gdbm-1.18.1_1.txz Installing /packages/All/gobject-introspection-1.56.1,1.txz Installing /packages/All/gnome_subr-1.0.txz Installing /packages/All/avahi-app-0.7_2.txz ===> Creating groups. Creating group 'avahi' with gid '558'. ===> Creating users Creating user 'avahi' with uid '558'. Installing /packages/All/libpaper-1.1.24.4.txz Installing /packages/All/cups-2.2.13.txz ===> Creating groups. Creating group 'cups' with gid '193'. ===> Creating users Creating user 'cups' with uid '193'. Installing /packages/All/libXi-1.7.10,1.txz Installing /packages/All/libXtst-1.2.3_2.txz Installing /packages/All/at-spi2-core-2.28.0.txz Installing /packages/All/at-spi2-atk-2.26.2.txz Installing /packages/All/libfontenc-1.1.4.txz Installing /packages/All/mkfontscale-1.2.1.txz Installing /packages/All/font-bh-ttf-1.0.3_4.txz Installing /packages/All/font-misc-meltho-1.0.3_4.txz Installing /packages/All/font-misc-ethiopic-1.0.3_4.txz Installing /packages/All/encodings-1.0.5,1.txz Installing /packages/All/dejavu-2.37_1.txz ===== Message from dejavu-2.37_1: -- Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. Installing /packages/All/xorg-fonts-truetype-7.7_1.txz Installing /packages/All/libXft-2.3.3.txz Installing /packages/All/pango-1.42.4_3.txz Installing /packages/All/hicolor-icon-theme-0.17.txz Installing /packages/All/libXcursor-1.2.0.txz Installing /packages/All/libXcomposite-0.4.5,1.txz Installing /packages/All/gtk-update-icon-cache-2.24.32.txz Installing /packages/All/adwaita-icon-theme-3.28.0.txz Installing /packages/All/libcroco-0.6.13.txz Installing /packages/All/libgsf-1.14.46.txz Installing /packages/All/librsvg2-2.40.21.txz Installing /packages/All/wayland-protocols-1.20.txz Installing /packages/All/gtk3-3.24.10_1.txz Installing /packages/All/libxslt-1.1.34_1.txz Installing /packages/All/libunwind-20170615.txz Installing /packages/All/gstreamer1-1.16.2.txz Installing /packages/All/json-glib-1.4.4.txz Installing /packages/All/geoclue-2.5.5.txz Installing /packages/All/orc-0.4.31.txz Installing /packages/All/iso-codes-4.2.txz Installing /packages/All/gstreamer1-plugins-1.16.2.txz Installing /packages/All/gstreamer1-plugins-bad-1.16.2.txz Installing /packages/All/pygobject3-common-3.28.3.txz Installing /packages/All/py37-setuptools-44.0.0.txz Installing /packages/All/py37-cairo-1.18.1_1.txz Installing /packages/All/py37-gobject3-3.28.3.txz Installing /packages/All/graphene-1.10.0.txz Installing /packages/All/libGLU-9.0.1.txz Installing /packages/All/gstreamer1-plugins-gl-1.16.2.txz Installing /packages/All/libXt-1.2.0,1.txz Installing /packages/All/webkit2-gtk3-2.26.4_1.txz Installing /packages/All/dconf-0.28.0.txz Installing /packages/All/gtk2-2.24.32.txz Installing /packages/All/libIDL-0.8.14_4.txz Installing /packages/All/ORBit2-2.14.19_2.txz Installing /packages/All/gconf2-3.2.6_5.txz Installing /packages/All/wx30-gtk3-3.0.4_9.txz Installing /packages/All/openbabel-2.4.1_5.txz Installing /packages/All/p5-XML-Parser-2.44.txz Installing /packages/All/intltool-0.51.0_1.txz UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/mpfr-4.0.2.txz Installing /packages/All/gmake-4.2.1_3.txz Installing /packages/All/libtextstyle-0.20.1.txz Installing /packages/All/gettext-tools-0.20.1_1.txz Installing /packages/All/binutils-2.33.1_2,1.txz Installing /packages/All/mpc-1.1.0_2.txz UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/gcc8-8.4.0.txz ===== Message from gcc8-8.4.0: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/pkgconf-1.6.3,1.txz UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/blas-3.5.0_6.txz Installing /packages/All/libint-1.2.1.15.txz Installing /packages/All/f2c-20060810_6.txz Installing /packages/All/lapack-3.5.0_8.txz Installing /packages/All/hwloc-1.11.11.txz Installing /packages/All/mpich-3.2.1_6.txz ===== Message from mpich-3.2.1_6: -- ===> NOTICE: The mpich port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Installing /packages/All/tcl86-8.6.10.txz Installing /packages/All/tk86-8.6.10_1.txz Installing /packages/All/tk-wrapper-1.1_3.txz ===== Message from tk-wrapper-1.1_3: -- You may wish to modify (or create) the configuration file: /usr/local/etc/wish.conf Sample configuration file is located at: /usr/local/etc/wish.conf.sample Installing /packages/All/libltdl-2.4.6.txz Installing /packages/All/libgd-2.2.5_2,1.txz Installing /packages/All/libXmu-1.1.3,1.txz Installing /packages/All/libXpm-3.5.13.txz Installing /packages/All/libXaw-1.0.13_3,2.txz Installing /packages/All/graphviz-2.42.3.txz Installing /packages/All/mpqc-2.3.1_45.txz UNFLAVORED devel/binutils -> use devel/binutils@native UNFLAVORED devel/binutils -> use devel/binutils@native UNFLAVORED devel/binutils -> use devel/binutils@native SUCCEEDED 00:03:03 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> libghemical-3.0.0_16 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> libghemical-3.0.0_16 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by libghemical-3.0.0_16 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> libghemical-3.0.0_16 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by libghemical-3.0.0_16 for building => SHA256 Checksum OK for libghemical-3.0.0.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> libghemical-3.0.0_16 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by libghemical-3.0.0_16 for building ===> Extracting for libghemical-3.0.0_16 ===> libghemical-3.0.0_16 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by libghemical-3.0.0_16 for building => SHA256 Checksum OK for libghemical-3.0.0.tar.gz. Extracted Memory Use: 3.80M SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for libghemical-3.0.0_16 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> libghemical-3.0.0_16 depends on executable: obabel - found ===> libghemical-3.0.0_16 depends on executable: intltool-update - found ===> libghemical-3.0.0_16 depends on executable: ld - found ===> libghemical-3.0.0_16 depends on executable: gfortran8 - found ===> libghemical-3.0.0_16 depends on executable: msgfmt - found ===> libghemical-3.0.0_16 depends on executable: gmake - found ===> libghemical-3.0.0_16 depends on package: pkgconf>=1.3.0_1 - found ===> libghemical-3.0.0_16 depends on file: /usr/local/bin/as - found ===> libghemical-3.0.0_16 depends on package: xorgproto>=0 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- ===> libghemical-3.0.0_16 depends on shared library: libblas.so - found (/usr/local/lib/libblas.so) ===> libghemical-3.0.0_16 depends on shared library: libint.so - found (/usr/local/lib/libint.so) ===> libghemical-3.0.0_16 depends on shared library: libf2c.so - found (/usr/local/lib/libf2c.so) ===> libghemical-3.0.0_16 depends on shared library: liblapack.so - found (/usr/local/lib/liblapack.so) ===> libghemical-3.0.0_16 depends on shared library: libmpqc.so - found (/usr/local/lib/libmpqc.so) ===> libghemical-3.0.0_16 depends on shared library: libintl.so - found (/usr/local/lib/libintl.so) ===> libghemical-3.0.0_16 depends on shared library: libGL.so - found (/usr/local/lib/libGL.so) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> libghemical-3.0.0_16 depends on executable: obabel - found ===> libghemical-3.0.0_16 depends on executable: intltool-update - found ===> libghemical-3.0.0_16 depends on executable: ld - found ===> libghemical-3.0.0_16 depends on executable: gfortran8 - found ===> libghemical-3.0.0_16 depends on executable: msgfmt - found ===> libghemical-3.0.0_16 depends on executable: gmake - found ===> libghemical-3.0.0_16 depends on package: pkgconf>=1.3.0_1 - found ===> libghemical-3.0.0_16 depends on file: /usr/local/bin/as - found ===> libghemical-3.0.0_16 depends on package: xorgproto>=0 - found ===> libghemical-3.0.0_16 depends on shared library: libblas.so - found (/usr/local/lib/libblas.so) ===> libghemical-3.0.0_16 depends on shared library: libint.so - found (/usr/local/lib/libint.so) ===> libghemical-3.0.0_16 depends on shared library: libf2c.so - found (/usr/local/lib/libf2c.so) ===> libghemical-3.0.0_16 depends on shared library: liblapack.so - found (/usr/local/lib/liblapack.so) ===> libghemical-3.0.0_16 depends on shared library: libmpqc.so - found (/usr/local/lib/libmpqc.so) ===> libghemical-3.0.0_16 depends on shared library: libintl.so - found (/usr/local/lib/libintl.so) ===> libghemical-3.0.0_16 depends on shared library: libGL.so - found (/usr/local/lib/libGL.so) ===> Configuring for libghemical-3.0.0_16 configure: loading site script /xports/Templates/config.site checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... (cached) /bin/mkdir -p checking for gawk... (cached) /usr/bin/awk checking whether gmake sets $(MAKE)... yes checking build system type... x86_64-portbld-dragonfly5.9 checking host system type... x86_64-portbld-dragonfly5.9 checking for gcc... cc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking for style of include used by gmake... GNU checking dependency style of cc... gcc3 checking whether we are using the GNU C++ compiler... yes checking whether c++ accepts -g... yes checking dependency style of c++... gcc3 checking how to run the C preprocessor... cpp checking how to run the C++ preprocessor... c++ -E checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for fgrep... (cached) /usr/bin/fgrep checking for ld used by cc... /usr/local/bin/ld checking if the linker (/usr/local/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/local/bin/nm checking the name lister (/usr/local/bin/nm) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... (cached) 262144 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... no checking for /usr/local/bin/ld option to reload object files... -r checking for objdump... /usr/local/bin/objdump checking how to recognize dependent libraries... pass_all checking for ar... /usr/local/bin/ar checking for strip... strip checking for ranlib... /usr/local/bin/ranlib checking command to parse /usr/local/bin/nm output from cc object... failed checking for ANSI C header files... (cached) yes checking for sys/types.h... (cached) yes checking for sys/stat.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for memory.h... (cached) yes checking for strings.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for dlfcn.h... (cached) yes checking whether we are using the GNU C++ compiler... (cached) yes checking whether c++ accepts -g... (cached) yes checking dependency style of c++... (cached) gcc3 checking how to run the C++ preprocessor... c++ -E checking for objdir... .libs checking if cc supports -fno-rtti -fno-exceptions... no checking for cc option to produce PIC... -fPIC -DPIC checking if cc PIC flag -fPIC -DPIC works... yes checking if cc static flag -static works... yes checking if cc supports -c -o file.o... yes checking if cc supports -c -o file.o... (cached) yes checking whether the cc linker (/usr/local/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... dragonfly5.9 ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for ld used by c++... /usr/local/bin/ld checking if the linker (/usr/local/bin/ld) is GNU ld... yes checking whether the c++ linker (/usr/local/bin/ld) supports shared libraries... yes checking for c++ option to produce PIC... -fPIC -DPIC checking if c++ PIC flag -fPIC -DPIC works... yes checking if c++ static flag -static works... yes checking if c++ supports -c -o file.o... yes checking if c++ supports -c -o file.o... (cached) yes checking whether the c++ linker (/usr/local/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... dragonfly5.9 ld.so checking how to hardcode library paths into programs... immediate checking for ar... /usr/local/bin/ar checking for sh... /bin/sh checking whether gmake sets $(MAKE)... (cached) yes checking pkg-config is at least version 0.9.0... yes checking whether NLS is requested... yes checking for intltool >= 0.40.0... 0.51.0 found checking for intltool-update... /usr/local/bin/intltool-update checking for intltool-merge... /usr/local/bin/intltool-merge checking for intltool-extract... /usr/local/bin/intltool-extract checking for xgettext... /usr/local/bin/xgettext checking for msgmerge... /usr/local/bin/msgmerge checking for msgfmt... /usr/local/bin/msgfmt checking for gmsgfmt... /usr/local/bin/msgfmt checking for perl... /usr/local/bin/perl checking for perl >= 5.8.1... 5.30.1 checking for XML::Parser... ok checking for locale.h... (cached) yes checking for LC_MESSAGES... yes checking libintl.h usability... yes checking libintl.h presence... yes checking for libintl.h... yes checking for ngettext in libc... no checking for bindtextdomain in -lintl... yes checking for ngettext in -lintl... yes checking for dgettext in -lintl... yes checking for bind_textdomain_codeset... yes checking for msgfmt... (cached) /usr/local/bin/msgfmt checking for dcgettext... yes checking if msgfmt accepts -c... yes checking for gmsgfmt... (cached) /usr/local/bin/msgfmt checking for xgettext... (cached) /usr/local/bin/xgettext checking whether build environment is sane... yes checking for acos in -lm... yes checking for main in -lblas... yes checking for main in -llapack... yes checking for sc-config... /usr/local/bin/sc-config checking SC - version... yes checking GL/gl.h usability... yes checking GL/gl.h presence... yes checking for GL/gl.h... yes checking for cc option to accept ISO C99... none needed checking for cc option to accept ISO Standard C... (cached) none needed checking for inline... inline checking for an ANSI C-conforming const... yes checking for ANSI C header files... (cached) yes configure: build options: ^^^^^^^^^^^^^^ enable MPQC : yes enable MOPAC7 : no configure: creating ./config.status config.status: creating libghemical.pc config.status: creating Makefile config.status: creating bin/Makefile config.status: creating bin/amber/Makefile config.status: creating bin/builder/Makefile config.status: creating bin/param_mm/Makefile config.status: creating bin/param_mm/default/Makefile config.status: creating bin/param_mm/prmfit/Makefile config.status: creating bin/param_mm/tripos52/Makefile config.status: creating bin/param_sf/Makefile config.status: creating bin/param_sf/default/Makefile config.status: creating po/Makefile.in config.status: creating src/Makefile config.status: creating src/libghemicalconfig.h config.status: creating src/libghemical-features.h config.status: executing src/libghemicalconfig2.h commands config.status: executing depfiles commands config.status: executing libtool commands config.status: executing default-1 commands config.status: executing stamp.h commands config.status: executing po/stamp-it commands SUCCEEDED 00:00:15 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for libghemical-3.0.0_16 gmake[2]: Entering directory '/construction/science/libghemical/libghemical-3.0.0' Making all in src gmake[3]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/src' gmake all-am gmake[4]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/src' /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\""/usr/local/share/locale"\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT atom.lo -MD -MP -MF .deps/atom.Tpo -c -o 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mfinder.lo mfinder.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT constraint.lo -MD -MP -MF .deps/constraint.Tpo -c constraint.cpp -fPIC -DPIC -o .libs/constraint.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT utility.lo -MD -MP -MF .deps/utility.Tpo -c utility.cpp -fPIC -DPIC -o .libs/utility.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT bond.lo -MD -MP -MF .deps/bond.Tpo -c bond.cpp -fPIC -DPIC -o .libs/bond.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT seqbuild.lo -MD -MP -MF .deps/seqbuild.Tpo -c seqbuild.cpp -fPIC -DPIC -o .libs/seqbuild.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT chn_info.lo -MD -MP -MF .deps/chn_info.Tpo -c chn_info.cpp -fPIC -DPIC -o .libs/chn_info.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT mfinder.lo -MD -MP -MF .deps/mfinder.Tpo -c mfinder.cpp -fPIC -DPIC -o .libs/mfinder.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT typerule.lo -MD -MP -MF .deps/typerule.Tpo -c typerule.cpp -fPIC -DPIC -o .libs/typerule.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT chn_info.lo -MD -MP -MF .deps/chn_info.Tpo -c chn_info.cpp -o chn_info.o >/dev/null 2>&1 atom.cpp:33:47: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] element element::current_element = element("C"); ^ libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT constraint.lo -MD -MP -MF .deps/constraint.Tpo -c constraint.cpp -o constraint.o >/dev/null 2>&1 In file included from model.cpp:31: eng1_qm.h: In member function 'virtual bool eng1_qm::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng1_qm.h:128:148: warning: no return statement in function returning non-void [-Wreturn-type] virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } ^ eng1_qm.h: In member function 'virtual bool eng1_qm::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)': eng1_qm.h:129:135: warning: no return statement in function returning non-void [-Wreturn-type] virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } ^ libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT atom.lo -MD -MP -MF .deps/atom.Tpo -c atom.cpp -o atom.o >/dev/null 2>&1 mv -f .deps/chn_info.Tpo .deps/chn_info.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\""/usr/local/share/locale"\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT eng1_qm.lo -MD -MP -MF .deps/eng1_qm.Tpo -c -o eng1_qm.lo eng1_qm.cpp In file included from model.cpp:35: eng2_qm_mm.h: In member function 'virtual bool eng2_qm_mm_mpqc::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng2_qm_mm.h:127:148: warning: no return statement in function returning non-void [-Wreturn-type] virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } ^ eng2_qm_mm.h: In member function 'virtual bool eng2_qm_mm_mpqc::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)': eng2_qm_mm.h:128:135: warning: no return statement in function returning non-void [-Wreturn-type] virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } ^ mv -f .deps/constraint.Tpo .deps/constraint.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\""/usr/local/share/locale"\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT eng1_qm_mpqc.lo -MD -MP -MF .deps/eng1_qm_mpqc.Tpo -c -o eng1_qm_mpqc.lo eng1_qm_mpqc.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT bond.lo -MD -MP -MF .deps/bond.Tpo -c bond.cpp -o bond.o >/dev/null 2>&1 libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT eng1_qm.lo -MD -MP -MF .deps/eng1_qm.Tpo -c eng1_qm.cpp -fPIC -DPIC -o .libs/eng1_qm.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT eng1_qm_mpqc.lo -MD -MP -MF .deps/eng1_qm_mpqc.Tpo -c eng1_qm_mpqc.cpp -fPIC -DPIC -o .libs/eng1_qm_mpqc.o mv -f .deps/atom.Tpo .deps/atom.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\""/usr/local/share/locale"\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT eng1_qm_mopac.lo -MD -MP -MF .deps/eng1_qm_mopac.Tpo -c -o eng1_qm_mopac.lo eng1_qm_mopac.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT eng1_qm_mopac.lo -MD -MP -MF .deps/eng1_qm_mopac.Tpo -c eng1_qm_mopac.cpp -fPIC -DPIC -o .libs/eng1_qm_mopac.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT eng1_qm_mopac.lo -MD -MP -MF .deps/eng1_qm_mopac.Tpo -c eng1_qm_mopac.cpp -o eng1_qm_mopac.o >/dev/null 2>&1 mv -f .deps/eng1_qm_mopac.Tpo .deps/eng1_qm_mopac.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\""/usr/local/share/locale"\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT eng1_mm.lo -MD -MP -MF .deps/eng1_mm.Tpo -c -o eng1_mm.lo eng1_mm.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT engine.lo -MD -MP -MF .deps/engine.Tpo -c engine.cpp -o engine.o >/dev/null 2>&1 libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT eng1_mm.lo -MD -MP -MF .deps/eng1_mm.Tpo -c eng1_mm.cpp -fPIC -DPIC -o .libs/eng1_mm.o model.cpp: In member function 'bool model::GetCRDSetVisible(i32u)': model.cpp:319:23: warning: control reaches end of non-void function [-Wreturn-type] else assertion_failed(__FILE__, __LINE__, "index overflow"); ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from eng1_qm.cpp:22: eng1_qm.h: In member function 'virtual bool eng1_qm::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng1_qm.h:128:148: warning: no return statement in function returning non-void [-Wreturn-type] virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } ^ eng1_qm.h: In member function 'virtual bool eng1_qm::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)': eng1_qm.h:129:135: warning: no return statement in function returning non-void [-Wreturn-type] virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } ^ libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT utility.lo -MD -MP -MF .deps/utility.Tpo -c utility.cpp -o utility.o >/dev/null 2>&1 libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT typerule.lo -MD -MP -MF .deps/typerule.Tpo -c typerule.cpp -o typerule.o >/dev/null 2>&1 mv -f .deps/bond.Tpo .deps/bond.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\""/usr/local/share/locale"\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT eng1_mm_tripos52.lo -MD -MP -MF .deps/eng1_mm_tripos52.Tpo -c -o eng1_mm_tripos52.lo eng1_mm_tripos52.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT eng1_mm_tripos52.lo -MD -MP -MF .deps/eng1_mm_tripos52.Tpo -c eng1_mm_tripos52.cpp -fPIC -DPIC -o .libs/eng1_mm_tripos52.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT mfinder.lo -MD -MP -MF .deps/mfinder.Tpo -c mfinder.cpp -o mfinder.o >/dev/null 2>&1 In file included from eng1_qm_mpqc.h:32, from eng1_qm_mpqc.cpp:22: eng1_qm.h: In member function 'virtual bool eng1_qm::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng1_qm.h:128:148: warning: no return statement in function returning non-void [-Wreturn-type] virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } ^ eng1_qm.h: In member function 'virtual bool eng1_qm::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)': eng1_qm.h:129:135: warning: no return statement in function returning non-void [-Wreturn-type] virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } ^ libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT eng1_qm.lo -MD -MP -MF .deps/eng1_qm.Tpo -c eng1_qm.cpp -o eng1_qm.o >/dev/null 2>&1 mv -f .deps/engine.Tpo .deps/engine.Plo /bin/sh 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-fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT intcrd.lo -MD -MP -MF .deps/intcrd.Tpo -c -o intcrd.lo intcrd.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT intcrd.lo -MD -MP -MF .deps/intcrd.Tpo -c intcrd.cpp -fPIC -DPIC -o .libs/intcrd.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT tab_mm_default.lo -MD -MP -MF .deps/tab_mm_default.Tpo -c tab_mm_default.cpp -o tab_mm_default.o >/dev/null 2>&1 libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT notice.lo -MD -MP -MF .deps/notice.Tpo -c notice.cpp -o notice.o >/dev/null 2>&1 In file included from eng2_qm_mm.h:28, from eng2_qm_mm.cpp:22: eng1_qm.h: In member function 'virtual bool eng1_qm::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng1_qm.h:128:148: warning: no return statement in function returning non-void [-Wreturn-type] virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } ^ eng1_qm.h: In member function 'virtual bool eng1_qm::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)': eng1_qm.h:129:135: warning: no return statement in function returning non-void [-Wreturn-type] virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } ^ In file included from eng2_qm_mm.cpp:22: eng2_qm_mm.h: In member function 'virtual bool eng2_qm_mm_mpqc::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng2_qm_mm.h:127:148: warning: no return statement in function returning non-void [-Wreturn-type] virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } ^ eng2_qm_mm.h: In member function 'virtual bool eng2_qm_mm_mpqc::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)': eng2_qm_mm.h:128:135: warning: no return statement in function returning non-void [-Wreturn-type] virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } ^ libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT conjgrad.lo -MD -MP -MF .deps/conjgrad.Tpo -c conjgrad.cpp -o conjgrad.o >/dev/null 2>&1 mv -f .deps/notice.Tpo .deps/notice.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\""/usr/local/share/locale"\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT search.lo -MD -MP -MF .deps/search.Tpo -c -o search.lo search.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT search.lo -MD -MP -MF .deps/search.Tpo -c search.cpp -fPIC -DPIC -o .libs/search.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT intcrd.lo -MD -MP -MF .deps/intcrd.Tpo -c intcrd.cpp -o intcrd.o >/dev/null 2>&1 mv -f .deps/conjgrad.Tpo .deps/conjgrad.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\""/usr/local/share/locale"\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT geomopt.lo -MD -MP -MF .deps/geomopt.Tpo -c -o geomopt.lo geomopt.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT eng2_qm_mm.lo -MD -MP -MF .deps/eng2_qm_mm.Tpo -c eng2_qm_mm.cpp -o eng2_qm_mm.o >/dev/null 2>&1 In file included from search.h:35, from search.cpp:22: eng1_qm.h: In member function 'virtual bool eng1_qm::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng1_qm.h:128:148: warning: no return statement in function returning non-void [-Wreturn-type] virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } ^ eng1_qm.h: In member function 'virtual bool eng1_qm::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)': eng1_qm.h:129:135: warning: no return statement in function returning non-void [-Wreturn-type] virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } ^ libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT geomopt.lo -MD -MP -MF .deps/geomopt.Tpo -c geomopt.cpp -fPIC -DPIC -o .libs/geomopt.o In file included from geomopt.h:31, from geomopt.cpp:22: eng1_qm.h: In member function 'virtual bool eng1_qm::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng1_qm.h:128:148: warning: no return statement in function returning non-void [-Wreturn-type] virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } ^ eng1_qm.h: In member function 'virtual bool eng1_qm::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)': eng1_qm.h:129:135: warning: no return statement in function returning non-void [-Wreturn-type] virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } ^ libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT geomopt.lo -MD -MP -MF .deps/geomopt.Tpo -c geomopt.cpp -o geomopt.o >/dev/null 2>&1 mv -f .deps/seqbuild.Tpo .deps/seqbuild.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\""/usr/local/share/locale"\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT moldyn.lo -MD -MP -MF .deps/moldyn.Tpo -c -o moldyn.lo moldyn.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT moldyn.lo -MD -MP -MF .deps/moldyn.Tpo -c moldyn.cpp -fPIC -DPIC -o .libs/moldyn.o mv -f .deps/intcrd.Tpo .deps/intcrd.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\""/usr/local/share/locale"\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT pop_ana.lo -MD -MP -MF .deps/pop_ana.Tpo -c -o pop_ana.lo pop_ana.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT pop_ana.lo -MD -MP -MF .deps/pop_ana.Tpo -c pop_ana.cpp -fPIC -DPIC -o .libs/pop_ana.o mv -f .deps/geomopt.Tpo .deps/geomopt.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\""/usr/local/share/locale"\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT sasaeval.lo -MD -MP -MF .deps/sasaeval.Tpo -c -o sasaeval.lo sasaeval.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT sasaeval.lo -MD -MP -MF .deps/sasaeval.Tpo -c sasaeval.cpp -fPIC -DPIC -o .libs/sasaeval.o In file included from pop_ana.h:31, from pop_ana.cpp:22: eng1_qm.h: In member function 'virtual bool eng1_qm::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng1_qm.h:128:148: warning: no return statement in function returning non-void [-Wreturn-type] virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } ^ eng1_qm.h: In member function 'virtual bool eng1_qm::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)': eng1_qm.h:129:135: warning: no return statement in function returning non-void [-Wreturn-type] virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } ^ mv -f .deps/eng2_qm_mm.Tpo .deps/eng2_qm_mm.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\""/usr/local/share/locale"\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT resonance.lo -MD -MP -MF .deps/resonance.Tpo -c -o resonance.lo resonance.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT resonance.lo -MD -MP -MF .deps/resonance.Tpo -c resonance.cpp -fPIC -DPIC -o .libs/resonance.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT moldyn.lo -MD -MP -MF .deps/moldyn.Tpo -c moldyn.cpp -o moldyn.o >/dev/null 2>&1 libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT search.lo -MD -MP -MF .deps/search.Tpo -c search.cpp -o search.o >/dev/null 2>&1 mv -f .deps/eng1_mm_prmfit.Tpo .deps/eng1_mm_prmfit.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT pop_ana.lo -MD -MP -MF .deps/pop_ana.Tpo -c pop_ana.cpp -o pop_ana.o >/dev/null 2>&1 libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT resonance.lo -MD -MP -MF .deps/resonance.Tpo -c resonance.cpp -o resonance.o >/dev/null 2>&1 mv -f .deps/moldyn.Tpo .deps/moldyn.Plo mv -f .deps/resonance.Tpo .deps/resonance.Plo mv -f .deps/pop_ana.Tpo .deps/pop_ana.Plo mv -f .deps/search.Tpo .deps/search.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT sasaeval.lo -MD -MP -MF .deps/sasaeval.Tpo -c sasaeval.cpp -o sasaeval.o >/dev/null 2>&1 mv -f .deps/eng1_mm_default.Tpo .deps/eng1_mm_default.Plo mv -f .deps/sasaeval.Tpo .deps/sasaeval.Plo mv -f .deps/model.Tpo .deps/model.Plo mv -f .deps/tab_mm_default.Tpo .deps/tab_mm_default.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT eng1_sf.lo -MD -MP -MF .deps/eng1_sf.Tpo -c eng1_sf.cpp -o eng1_sf.o >/dev/null 2>&1 mv -f .deps/eng1_sf.Tpo .deps/eng1_sf.Plo /bin/sh ../libtool --tag=CXX --mode=link c++ -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -version-info 5:1:0 -lSCbasis -lSCcints -lSCclass -lSCcontainer -lSCdft -lSCgroup -lSCintv3 -lSCisosurf -lSCkeyval -lSCmbpt -lSCmbptr12 -lSCmisc -lSCmolecule -lSCoint3 -lSCoptimize -lSCoptions -lSCpsi -lSCref -lSCrender -lSCscf -lSCscmat -lSCsolvent -lSCstate -lSCsymmetry -lSCwfn -lgfortran -lpthread -lblas -llapack -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -o libghemical.la -rpath /usr/local/lib atom.lo bond.lo constraint.lo model.lo engine.lo typerule.lo utility.lo chn_info.lo seqbuild.lo mfinder.lo eng1_qm.lo eng1_qm_mpqc.lo eng1_qm_mopac.lo eng1_mm.lo eng1_mm_tripos52.lo tab_mm_tripos52.lo eng1_mm_default.lo tab_mm_default.lo eng1_mm_prmfit.lo tab_mm_prmfit.lo eng1_sf.lo eng1_sf_ua.lo eng1_sf_cg.lo eng2_qm_mm.lo notice.lo conjgrad.lo intcrd.lo search.lo geomopt.lo moldyn.lo pop_ana.lo sasaeval.lo resonance.lo -llapack -lblas -lm -L/usr/local/lib -L/usr/local/lib -lderiv -lr12 -lint -lfl -lm -ldl -L/usr/local/lib -lpthread -lblas -L/usr/local/lib/gcc8 -L/usr/local/lib -L/usr/local/bin -L/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0 -L/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../../../../x86_64-portbld-dragonfly5.9/lib -L/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../.. -lmpich -lgfortran -lm -lgcc_s -lquadmath -llapack -lblas -L/usr/local/lib/gcc8 -L/usr/local/lib -L/usr/local/bin -L/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0 -L/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../../../../x86_64-portbld-dragonfly5.9/lib -L/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../.. -lmpich -lgfortran -lm -lgcc_s -lquadmath libtool: link: c++ -shared -nostdlib /usr/lib/crti.o /usr/lib/gcc80/crtbeginS.o .libs/atom.o .libs/bond.o .libs/constraint.o .libs/model.o .libs/engine.o .libs/typerule.o .libs/utility.o .libs/chn_info.o .libs/seqbuild.o .libs/mfinder.o .libs/eng1_qm.o .libs/eng1_qm_mpqc.o .libs/eng1_qm_mopac.o .libs/eng1_mm.o .libs/eng1_mm_tripos52.o .libs/tab_mm_tripos52.o .libs/eng1_mm_default.o .libs/tab_mm_default.o .libs/eng1_mm_prmfit.o .libs/tab_mm_prmfit.o .libs/eng1_sf.o .libs/eng1_sf_ua.o .libs/eng1_sf_cg.o .libs/eng2_qm_mm.o .libs/notice.o .libs/conjgrad.o .libs/intcrd.o .libs/search.o .libs/geomopt.o .libs/moldyn.o .libs/pop_ana.o .libs/sasaeval.o .libs/resonance.o -lSCbasis -lSCcints -lSCclass -lSCcontainer -lSCdft -lSCgroup -lSCintv3 -lSCisosurf -lSCkeyval -lSCmbpt -lSCmbptr12 -lSCmisc -lSCmolecule -lSCoint3 -lSCoptimize -lSCoptions -lSCpsi -lSCref -lSCrender -lSCscf -lSCscmat -lSCsolvent -lSCstate -lSCsymmetry -lSCwfn -L/usr/local/lib/gcc8 -L/usr/local/lib -lderiv -lr12 -lint -lfl -ldl -lpthread -L/usr/local/bin -L/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0 -L/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../../../../x86_64-portbld-dragonfly5.9/lib -L/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../.. -llapack -lblas -lmpich -lgfortran -lgcc_s -lquadmath -L/usr/lib/gcc80 -lstdc++ -lm -lc -lgcc -lgcc_pic /usr/lib/gcc80/crtendS.o /usr/lib/crtn.o -Wl,-rpath=/usr/local/lib/gcc8 -B/usr/local/bin -Wl,-soname -Wl,libghemical.so.5 -o .libs/libghemical.so.5.0.1 /usr/local/bin/ld: /usr/lib/libc.so: .dynsym local symbol at index 8 (>= sh_info of 6) libtool: link: (cd ".libs" && rm -f "libghemical.so.5" && ln -s "libghemical.so.5.0.1" "libghemical.so.5") libtool: link: (cd ".libs" && rm -f "libghemical.so" && ln -s "libghemical.so.5.0.1" "libghemical.so") libtool: link: /usr/local/bin/ar cru .libs/libghemical.a atom.o bond.o constraint.o model.o engine.o typerule.o utility.o chn_info.o seqbuild.o mfinder.o eng1_qm.o eng1_qm_mpqc.o eng1_qm_mopac.o eng1_mm.o eng1_mm_tripos52.o tab_mm_tripos52.o eng1_mm_default.o tab_mm_default.o eng1_mm_prmfit.o tab_mm_prmfit.o eng1_sf.o eng1_sf_ua.o eng1_sf_cg.o eng2_qm_mm.o notice.o conjgrad.o intcrd.o search.o geomopt.o moldyn.o pop_ana.o sasaeval.o resonance.o /usr/local/bin/ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: /usr/local/bin/ranlib .libs/libghemical.a libtool: link: ( cd ".libs" && rm -f "libghemical.la" && ln -s "../libghemical.la" "libghemical.la" ) gmake[4]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/src' gmake[3]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/src' Making all in bin gmake[3]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin' Making all in amber gmake[4]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin/amber' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin/amber' Making all in builder gmake[4]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin/builder' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin/builder' Making all in param_mm gmake[4]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_mm' Making all in default gmake[5]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_mm/default' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_mm/default' Making all in prmfit gmake[5]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_mm/prmfit' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_mm/prmfit' Making all in tripos52 gmake[5]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_mm/tripos52' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_mm/tripos52' gmake[5]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_mm' gmake[5]: Nothing to be done for 'all-am'. gmake[5]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_mm' gmake[4]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_mm' Making all in param_sf gmake[4]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_sf' Making all in default gmake[5]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_sf/default' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_sf/default' gmake[5]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_sf' gmake[5]: Nothing to be done for 'all-am'. gmake[5]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_sf' gmake[4]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_sf' gmake[4]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin' gmake[4]: Nothing to be done for 'all-am'. gmake[4]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin' gmake[3]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin' Making all in po gmake[3]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/po' file=`echo de | sed 's,.*/,,'`.gmo \ && rm -f $file && /usr/local/bin/msgfmt -o $file de.po file=`echo fi | sed 's,.*/,,'`.gmo \ && rm -f $file && /usr/local/bin/msgfmt -o $file fi.po file=`echo mk | sed 's,.*/,,'`.gmo \ && rm -f $file && /usr/local/bin/msgfmt -o $file mk.po file=`echo pt_BR | sed 's,.*/,,'`.gmo \ && rm -f $file && /usr/local/bin/msgfmt -o $file pt_BR.po file=`echo ru | sed 's,.*/,,'`.gmo \ && rm -f $file && /usr/local/bin/msgfmt -o $file ru.po file=`echo sq | sed 's,.*/,,'`.gmo \ && rm -f $file && /usr/local/bin/msgfmt -o $file sq.po gmake[3]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/po' gmake[3]: Entering directory '/construction/science/libghemical/libghemical-3.0.0' gmake[3]: Nothing to be done for 'all-am'. gmake[3]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0' gmake[2]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0' SUCCEEDED 00:00:45 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> libghemical-3.0.0_16 depends on executable: gfortran8 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for libghemical-3.0.0_16 ===> libghemical-3.0.0_16 depends on executable: gfortran8 - found ===> Generating temporary packing list gmake[2]: Entering directory '/construction/science/libghemical/libghemical-3.0.0' gmake INSTALL_PROGRAM="/bin/sh /construction/science/libghemical/libghemical-3.0.0/install-sh -c -s" \ install_sh_PROGRAM="/bin/sh /construction/science/libghemical/libghemical-3.0.0/install-sh -c -s" INSTALL_STRIP_FLAG=-s \ `test -z 'strip' || \ echo "INSTALL_PROGRAM_ENV=STRIPPROG='strip'"` install gmake[3]: Entering directory '/construction/science/libghemical/libghemical-3.0.0' Making install in src gmake[4]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/src' gmake[5]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/src' test -z "/usr/local/lib" || /bin/mkdir -p "/construction/science/libghemical/stage/usr/local/lib" /bin/sh ../libtool --mode=install /usr/bin/install -c -s libghemical.la '/construction/science/libghemical/stage/usr/local/lib' libtool: install: /usr/bin/install -c .libs/libghemical.so.5.0.1 /construction/science/libghemical/stage/usr/local/lib/libghemical.so.5.0.1 libtool: install: strip --strip-unneeded /construction/science/libghemical/stage/usr/local/lib/libghemical.so.5.0.1 libtool: install: (cd /construction/science/libghemical/stage/usr/local/lib && { ln -s -f libghemical.so.5.0.1 libghemical.so.5 || { rm -f libghemical.so.5 && ln -s libghemical.so.5.0.1 libghemical.so.5; }; }) libtool: install: (cd /construction/science/libghemical/stage/usr/local/lib && { ln -s -f libghemical.so.5.0.1 libghemical.so || { rm -f libghemical.so && ln -s libghemical.so.5.0.1 libghemical.so; }; }) libtool: install: /usr/bin/install -c .libs/libghemical.lai /construction/science/libghemical/stage/usr/local/lib/libghemical.la libtool: install: /usr/bin/install -c .libs/libghemical.a /construction/science/libghemical/stage/usr/local/lib/libghemical.a libtool: install: strip --strip-debug /construction/science/libghemical/stage/usr/local/lib/libghemical.a libtool: install: chmod 644 /construction/science/libghemical/stage/usr/local/lib/libghemical.a libtool: install: /usr/local/bin/ranlib /construction/science/libghemical/stage/usr/local/lib/libghemical.a libtool: install: warning: remember to run `libtool --finish /usr/local/lib' test -z "/usr/local/include/ghemical" || /bin/mkdir -p "/construction/science/libghemical/stage/usr/local/include/ghemical" install -m 0644 libghemicaldefine.h libghemical-features.h local_i18n.h typedef.h v3d.h atom.h bond.h constraint.h model.h engine.h typerule.h utility.h chn_info.h seqbuild.h mfinder.h eng1_qm.h eng1_qm_mpqc.h eng1_qm_mopac.h eng1_mm.h eng1_mm_tripos52.h tab_mm_tripos52.h eng1_mm_default.h tab_mm_default.h eng1_mm_prmfit.h tab_mm_prmfit.h eng1_sf.h eng1_sf_ua.h eng1_sf_cg.h eng2_qm_mm.h notice.h conjgrad.h intcrd.h search.h geomopt.h moldyn.h pop_ana.h sasaeval.h resonance.h '/construction/science/libghemical/stage/usr/local/include/ghemical' gmake[5]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/src' gmake[4]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/src' Making install in bin gmake[4]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin' Making install in amber gmake[5]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin/amber' gmake[6]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin/amber' gmake[6]: Nothing to be done for 'install-exec-am'. test -z "/usr/local/share/libghemical/3.0.0/amber" || /bin/mkdir -p "/construction/science/libghemical/stage/usr/local/share/libghemical/3.0.0/amber" install -m 0644 all_amino94_MOD.in all_aminoct94.in all_aminont94.in all_nuc94_MOD.in parm99_frcmod_ff99SB.dat '/construction/science/libghemical/stage/usr/local/share/libghemical/3.0.0/amber' gmake[6]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin/amber' gmake[5]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin/amber' Making install in builder gmake[5]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin/builder' gmake[6]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin/builder' gmake[6]: Nothing to be done for 'install-exec-am'. test -z "/usr/local/share/libghemical/3.0.0/builder" || /bin/mkdir -p "/construction/science/libghemical/stage/usr/local/share/libghemical/3.0.0/builder" install -m 0644 amino.txt nucleic.txt '/construction/science/libghemical/stage/usr/local/share/libghemical/3.0.0/builder' gmake[6]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin/builder' gmake[5]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin/builder' Making install in param_mm gmake[5]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_mm' Making install in default gmake[6]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_mm/default' gmake[7]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_mm/default' gmake[7]: Nothing to be done for 'install-exec-am'. test -z "/usr/local/share/libghemical/3.0.0/param_mm/default" || /bin/mkdir -p "/construction/science/libghemical/stage/usr/local/share/libghemical/3.0.0/param_mm/default" install -m 0644 atomtypes.txt parameters1.txt parameters2.txt parameters3.txt parameters4.txt '/construction/science/libghemical/stage/usr/local/share/libghemical/3.0.0/param_mm/default' gmake[7]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_mm/default' gmake[6]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_mm/default' Making install in prmfit gmake[6]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_mm/prmfit' gmake[7]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_mm/prmfit' gmake[7]: Nothing to be done for 'install-exec-am'. test -z "/usr/local/share/libghemical/3.0.0/param_mm/prmfit" || /bin/mkdir -p "/construction/science/libghemical/stage/usr/local/share/libghemical/3.0.0/param_mm/prmfit" install -m 0644 atomtypes.txt parameters1.txt parameters2.txt parameters3.txt parameters4.txt '/construction/science/libghemical/stage/usr/local/share/libghemical/3.0.0/param_mm/prmfit' gmake[7]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_mm/prmfit' gmake[6]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_mm/prmfit' Making install in tripos52 gmake[6]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_mm/tripos52' gmake[7]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_mm/tripos52' gmake[7]: Nothing to be done for 'install-exec-am'. test -z "/usr/local/share/libghemical/3.0.0/param_mm/tripos52" || /bin/mkdir -p "/construction/science/libghemical/stage/usr/local/share/libghemical/3.0.0/param_mm/tripos52" install -m 0644 atomtypes.txt parameters1.txt parameters2.txt parameters3.txt parameters4.txt parameters5.txt '/construction/science/libghemical/stage/usr/local/share/libghemical/3.0.0/param_mm/tripos52' gmake[7]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_mm/tripos52' gmake[6]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_mm/tripos52' gmake[6]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_mm' gmake[7]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_mm' gmake[7]: Nothing to be done for 'install-exec-am'. gmake[7]: Nothing to be done for 'install-data-am'. gmake[7]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_mm' gmake[6]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_mm' gmake[5]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_mm' Making install in param_sf gmake[5]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_sf' Making install in default gmake[6]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_sf/default' gmake[7]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_sf/default' gmake[7]: Nothing to be done for 'install-exec-am'. test -z "/usr/local/share/libghemical/3.0.0/param_sf/default" || /bin/mkdir -p "/construction/science/libghemical/stage/usr/local/share/libghemical/3.0.0/param_sf/default" install -m 0644 loopdip.txt looptor.txt nonbonded.txt '/construction/science/libghemical/stage/usr/local/share/libghemical/3.0.0/param_sf/default' gmake[7]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_sf/default' gmake[6]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_sf/default' gmake[6]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_sf' gmake[7]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_sf' gmake[7]: Nothing to be done for 'install-exec-am'. gmake[7]: Nothing to be done for 'install-data-am'. gmake[7]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_sf' gmake[6]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_sf' gmake[5]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin/param_sf' gmake[5]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin' gmake[6]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/bin' gmake[6]: Nothing to be done for 'install-exec-am'. gmake[6]: Nothing to be done for 'install-data-am'. gmake[6]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin' gmake[5]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin' gmake[4]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/bin' Making install in po gmake[4]: Entering directory '/construction/science/libghemical/libghemical-3.0.0/po' linguas="de fi mk pt_BR ru sq "; \ for lang in $linguas; do \ dir=/construction/science/libghemical/stage/usr/local/share/locale/$lang/LC_MESSAGES; \ /bin/sh /construction/science/libghemical/libghemical-3.0.0/install-sh -d $dir; \ if test -r $lang.gmo; then \ install -m 0644 $lang.gmo $dir/libghemical.mo; \ echo "installing $lang.gmo as $dir/libghemical.mo"; \ else \ install -m 0644 ./$lang.gmo $dir/libghemical.mo; \ echo "installing ./$lang.gmo as" \ "$dir/libghemical.mo"; \ fi; \ if test -r $lang.gmo.m; then \ install -m 0644 $lang.gmo.m $dir/libghemical.mo.m; \ echo "installing $lang.gmo.m as $dir/libghemical.mo.m"; \ else \ if test -r ./$lang.gmo.m ; then \ install -m 0644 ./$lang.gmo.m \ $dir/libghemical.mo.m; \ echo "installing ./$lang.gmo.m as" \ "$dir/libghemical.mo.m"; \ else \ true; \ fi; \ fi; \ done installing de.gmo as /construction/science/libghemical/stage/usr/local/share/locale/de/LC_MESSAGES/libghemical.mo installing fi.gmo as /construction/science/libghemical/stage/usr/local/share/locale/fi/LC_MESSAGES/libghemical.mo installing mk.gmo as /construction/science/libghemical/stage/usr/local/share/locale/mk/LC_MESSAGES/libghemical.mo installing pt_BR.gmo as /construction/science/libghemical/stage/usr/local/share/locale/pt_BR/LC_MESSAGES/libghemical.mo installing ru.gmo as /construction/science/libghemical/stage/usr/local/share/locale/ru/LC_MESSAGES/libghemical.mo installing sq.gmo as /construction/science/libghemical/stage/usr/local/share/locale/sq/LC_MESSAGES/libghemical.mo gmake[4]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0/po' gmake[4]: Entering directory '/construction/science/libghemical/libghemical-3.0.0' gmake[5]: Entering directory '/construction/science/libghemical/libghemical-3.0.0' gmake[5]: Nothing to be done for 'install-exec-am'. test -z "/usr/local/libdata/pkgconfig" || /bin/mkdir -p "/construction/science/libghemical/stage/usr/local/libdata/pkgconfig" install -m 0644 libghemical.pc '/construction/science/libghemical/stage/usr/local/libdata/pkgconfig' gmake[5]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0' gmake[4]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0' gmake[3]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0' gmake[2]: Leaving directory '/construction/science/libghemical/libghemical-3.0.0' ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Error: /usr/local/lib/libghemical.so.5.0.1 is linked to /usr/local/lib/libmpi.so.12 from net/mpich but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libmpi.so:net/mpich Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:06 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for libghemical-3.0.0_16 file sizes/checksums [75]: 0% file sizes/checksums [75]: 100% packing files [75]: 0% packing files [75]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:05 TOTAL TIME 00:04:16