------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/gettext-runtime-0.20.1.txz Installing /packages/All/ncurses-6.1.20190525.txz Installing /packages/All/bash-5.0.16.txz Installing /packages/All/libnghttp2-1.40.0.txz Installing /packages/All/ca_root_nss-3.51.txz ===== Message from ca_root_nss-3.51: -- FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem Installing /packages/All/openssl-1.1.1d,1.txz Installing /packages/All/curl-7.68.0.txz Installing /packages/All/expat-2.2.8.txz Installing /packages/All/jsoncpp-1.9.2.txz Installing /packages/All/libuv-1.35.0.txz Installing /packages/All/rhash-1.3.5.txz Installing /packages/All/liblz4-1.9.2_1,1.txz Installing /packages/All/lzo2-2.10_1.txz Installing /packages/All/libarchive-3.4.2,1.txz Installing /packages/All/cmake-3.16.5.txz Installing /packages/All/gmp-6.2.0.txz Installing /packages/All/mpfr-4.0.2.txz Installing /packages/All/mpc-1.1.0_2.txz UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/binutils-2.33.1_2,1.txz Installing /packages/All/gcc8-8.4.0.txz ===== Message from gcc8-8.4.0: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/blas-3.5.0_6.txz Installing /packages/All/cblas-1.0_12.txz ===== Message from cblas-1.0_12: -- ===> NOTICE: The cblas port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Installing /packages/All/fftw3-3.3.8_5.txz Installing /packages/All/gsl-2.6.txz Installing /packages/All/lapack-3.5.0_8.txz Installing /packages/All/perl5-5.30.1.txz ===== Message from perl5-5.30.1: -- The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. Installing /packages/All/libxc-4.2.3_3.txz Installing /packages/All/pciids-20200222.txz Installing /packages/All/libpciaccess-0.16.txz Installing /packages/All/libxml2-2.9.10.txz Installing /packages/All/hwloc-1.11.11.txz Installing /packages/All/mpich-3.2.1_6.txz ===== Message from mpich-3.2.1_6: -- ===> NOTICE: The mpich port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port UNFLAVORED devel/binutils -> use devel/binutils@native UNFLAVORED devel/binutils -> use devel/binutils@native SUCCEEDED 00:00:58 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> jdftx-1.5.0_1 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> jdftx-1.5.0_1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by jdftx-1.5.0_1 for building SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> jdftx-1.5.0_1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by jdftx-1.5.0_1 for building => SHA256 Checksum OK for shankar1729-jdftx-v1.5.0_GH0.tar.gz. SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> jdftx-1.5.0_1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by jdftx-1.5.0_1 for building ===> Extracting for jdftx-1.5.0_1 => SHA256 Checksum OK for shankar1729-jdftx-v1.5.0_GH0.tar.gz. Extracted Memory Use: 58.43M SUCCEEDED 00:00:02 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for jdftx-1.5.0_1 ===> Applying ports patches for jdftx-1.5.0_1 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> jdftx-1.5.0_1 depends on executable: bash - found ===> jdftx-1.5.0_1 depends on file: /usr/local/bin/cmake - found ===> jdftx-1.5.0_1 depends on executable: gfortran8 - found ===> jdftx-1.5.0_1 depends on file: /usr/local/bin/as - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- ===> jdftx-1.5.0_1 depends on shared library: libblas.so - found (/usr/local/lib/libblas.so) ===> jdftx-1.5.0_1 depends on shared library: libcblas.so - found (/usr/local/lib/libcblas.so) ===> jdftx-1.5.0_1 depends on shared library: libfftw3.so - found (/usr/local/lib/libfftw3.so) ===> jdftx-1.5.0_1 depends on shared library: libgsl.so - found (/usr/local/lib/libgsl.so) ===> jdftx-1.5.0_1 depends on shared library: liblapack.so - found (/usr/local/lib/liblapack.so) ===> jdftx-1.5.0_1 depends on shared library: libxc.so - found (/usr/local/lib/libxc.so) ===> jdftx-1.5.0_1 depends on shared library: libmpich.so - found (/usr/local/lib/libmpich.so) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> jdftx-1.5.0_1 depends on executable: bash - found ===> jdftx-1.5.0_1 depends on file: /usr/local/bin/cmake - found ===> jdftx-1.5.0_1 depends on executable: gfortran8 - found ===> jdftx-1.5.0_1 depends on file: /usr/local/bin/as - found ===> jdftx-1.5.0_1 depends on shared library: libblas.so - found (/usr/local/lib/libblas.so) ===> jdftx-1.5.0_1 depends on shared library: libcblas.so - found (/usr/local/lib/libcblas.so) ===> jdftx-1.5.0_1 depends on shared library: libfftw3.so - found (/usr/local/lib/libfftw3.so) ===> jdftx-1.5.0_1 depends on shared library: libgsl.so - found (/usr/local/lib/libgsl.so) ===> jdftx-1.5.0_1 depends on shared library: liblapack.so - found (/usr/local/lib/liblapack.so) ===> jdftx-1.5.0_1 depends on shared library: libxc.so - found (/usr/local/lib/libxc.so) ===> jdftx-1.5.0_1 depends on shared library: libmpich.so - found (/usr/local/lib/libmpich.so) ===> Configuring for jdftx-1.5.0_1 ===> Performing out-of-source build /bin/mkdir -p /construction/science/jdftx/.build -- The C compiler identification is GNU 8.3.0 -- The CXX compiler identification is GNU 8.3.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Could NOT find Git (missing: GIT_EXECUTABLE) -- Looking for gsl_integration_glfixed_point -- Looking for gsl_integration_glfixed_point - found -- Found GSL: /usr/local/lib/libgsl.so -- Looking for pthread.h CMake Warning (dev) at /usr/local/share/cmake/Modules/CheckIncludeFile.cmake:80 (message): Policy CMP0075 is not set: Include file check macros honor CMAKE_REQUIRED_LIBRARIES. Run "cmake --help-policy CMP0075" for policy details. Use the cmake_policy command to set the policy and suppress this warning. CMAKE_REQUIRED_LIBRARIES is set to: /usr/local/lib/libgsl.so;/usr/local/lib/libgslcblas.so;;m For compatibility with CMake 3.11 and below this check is ignoring it. Call Stack (most recent call first): /usr/local/share/cmake/Modules/FindThreads.cmake:128 (CHECK_INCLUDE_FILE) CMakeLists.txt:68 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Looking for pthread.h - found -- Found Threads: TRUE -- Found FFTW3: /usr/local/lib/libfftw3_threads.so /usr/local/lib/libfftw3.so -- Found LAPACK: -llapack -lblas -- Found CBLAS: /usr/local/lib/libcblas.so -- Found MPI_C: /usr/local/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/local/lib/libmpicxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Found LibXC: /usr/local/lib/libxc.so -- Performing Test HAS_NO_UNUSED_RESULT -- Performing Test HAS_NO_UNUSED_RESULT - Success -- Performing Test HAS_TEMPLATE_DEPTH -- Performing Test HAS_TEMPLATE_DEPTH - Success -- Looking for sincos -- Looking for sincos - found Found function sincos -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_CXX_FLAGS_DEBUG CMAKE_C_FLAGS_DEBUG CMAKE_C_FLAGS_RELEASE CMAKE_MODULE_LINKER_FLAGS -- Build files have been written to: /construction/science/jdftx/.build SUCCEEDED 00:00:05 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for jdftx-1.5.0_1 /usr/local/bin/cmake -S/construction/science/jdftx/jdftx-1.5.0/jdftx -B/construction/science/jdftx/.build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/local/bin/cmake -E cmake_progress_start /construction/science/jdftx/.build/CMakeFiles /construction/science/jdftx/.build/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all --- CMakeFiles/jdftxlib.dir/all --- --- pseudopotentials/CMakeFiles/PseudopotentialLibrary.dir/all --- --- CMakeFiles/jdftxlib.dir/all --- /usr/bin/make -f CMakeFiles/jdftxlib.dir/build.make CMakeFiles/jdftxlib.dir/depend --- pseudopotentials/CMakeFiles/PseudopotentialLibrary.dir/all --- /usr/bin/make -f pseudopotentials/CMakeFiles/PseudopotentialLibrary.dir/build.make pseudopotentials/CMakeFiles/PseudopotentialLibrary.dir/depend --- pseudopotentials/CMakeFiles/PseudopotentialLibrary.dir/depend --- cd /construction/science/jdftx/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/jdftx/jdftx-1.5.0/jdftx /construction/science/jdftx/jdftx-1.5.0/jdftx/pseudopotentials /construction/science/jdftx/.build /construction/science/jdftx/.build/pseudopotentials /construction/science/jdftx/.build/pseudopotentials/CMakeFiles/PseudopotentialLibrary.dir/DependInfo.cmake --- CMakeFiles/jdftxlib.dir/all --- --- CMakeFiles/jdftxlib.dir/depend --- cd /construction/science/jdftx/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/jdftx/jdftx-1.5.0/jdftx /construction/science/jdftx/jdftx-1.5.0/jdftx /construction/science/jdftx/.build /construction/science/jdftx/.build /construction/science/jdftx/.build/CMakeFiles/jdftxlib.dir/DependInfo.cmake --- pseudopotentials/CMakeFiles/PseudopotentialLibrary.dir/all --- Scanning dependencies of target PseudopotentialLibrary /usr/bin/make -f pseudopotentials/CMakeFiles/PseudopotentialLibrary.dir/build.make pseudopotentials/CMakeFiles/PseudopotentialLibrary.dir/build --- pseudopotentials/CMakeFiles/PseudopotentialLibrary --- cd /construction/science/jdftx/.build/pseudopotentials && /construction/science/jdftx/jdftx-1.5.0/jdftx/pseudopotentials/update.sh /construction/science/jdftx/.build/pseudopotentials /construction/science/jdftx/jdftx-1.5.0/jdftx/pseudopotentials --- CMakeFiles/jdftxlib.dir/all --- Scanning dependencies of target jdftxlib /usr/bin/make -f CMakeFiles/jdftxlib.dir/build.make CMakeFiles/jdftxlib.dir/build --- CMakeFiles/jdftxlib.dir/commands/command.cpp.o --- --- CMakeFiles/jdftxlib.dir/commands/coulomb_interaction.cpp.o --- --- CMakeFiles/jdftxlib.dir/commands/debug.cpp.o --- --- CMakeFiles/jdftxlib.dir/commands/density_of_states.cpp.o --- --- CMakeFiles/jdftxlib.dir/commands/dump.cpp.o --- --- CMakeFiles/jdftxlib.dir/commands/elec_ex_corr.cpp.o --- --- CMakeFiles/jdftxlib.dir/commands/elec_fillings.cpp.o --- --- CMakeFiles/jdftxlib.dir/commands/elec_misc.cpp.o --- --- CMakeFiles/jdftxlib.dir/commands/fluid.cpp.o --- --- CMakeFiles/jdftxlib.dir/commands/command.cpp.o --- [ 0%] Building CXX object CMakeFiles/jdftxlib.dir/commands/command.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/commands/command.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/commands/command.cpp --- CMakeFiles/jdftxlib.dir/commands/coulomb_interaction.cpp.o --- [ 1%] Building CXX object CMakeFiles/jdftxlib.dir/commands/coulomb_interaction.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/commands/coulomb_interaction.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/commands/coulomb_interaction.cpp --- CMakeFiles/jdftxlib.dir/commands/debug.cpp.o --- [ 0%] Building CXX object CMakeFiles/jdftxlib.dir/commands/debug.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/commands/debug.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/commands/debug.cpp --- CMakeFiles/jdftxlib.dir/commands/dump.cpp.o --- [ 3%] Building CXX object CMakeFiles/jdftxlib.dir/commands/dump.cpp.o --- CMakeFiles/jdftxlib.dir/commands/elec_ex_corr.cpp.o --- [ 2%] Building CXX object CMakeFiles/jdftxlib.dir/commands/elec_ex_corr.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/commands/elec_ex_corr.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/commands/elec_ex_corr.cpp --- CMakeFiles/jdftxlib.dir/commands/elec_fillings.cpp.o --- [ 2%] Building CXX object CMakeFiles/jdftxlib.dir/commands/elec_fillings.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/commands/elec_fillings.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/commands/elec_fillings.cpp --- CMakeFiles/jdftxlib.dir/commands/dump.cpp.o --- /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/commands/dump.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/commands/dump.cpp --- CMakeFiles/jdftxlib.dir/commands/elec_misc.cpp.o --- [ 3%] Building CXX object CMakeFiles/jdftxlib.dir/commands/elec_misc.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/commands/elec_misc.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/commands/elec_misc.cpp --- CMakeFiles/jdftxlib.dir/commands/density_of_states.cpp.o --- [ 4%] Building CXX object CMakeFiles/jdftxlib.dir/commands/density_of_states.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/commands/density_of_states.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/commands/density_of_states.cpp --- CMakeFiles/jdftxlib.dir/commands/fluid.cpp.o --- [ 5%] Building CXX object CMakeFiles/jdftxlib.dir/commands/fluid.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/commands/fluid.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/commands/fluid.cpp --- pseudopotentials/CMakeFiles/PseudopotentialLibrary.dir/all --- [ 5%] Built target PseudopotentialLibrary --- CMakeFiles/jdftxlib.dir/all --- --- CMakeFiles/jdftxlib.dir/commands/initial_state.cpp.o --- [ 6%] Building CXX object CMakeFiles/jdftxlib.dir/commands/initial_state.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/commands/initial_state.cpp.o -c 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/construction/science/jdftx/jdftx-1.5.0/jdftx/core/CoulombPeriodic.cpp --- CMakeFiles/jdftxlib.dir/core/Coulomb.cpp.o --- In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:25, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ScalarField.h:33, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Coulomb.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/CoulombPeriodic.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Coulomb.cpp:20: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/BlasExtra.h: In instantiation of 'void eblas_zero(int, T*) [with T = complex]': /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:261:23: required from 'void ManagedMemory::zero() [with T = complex]' /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ScalarField.h:81:38: required from 'void FieldData::zero() [with T = complex]' /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Operators.h:247:47: required from 'void initZero(std::shared_ptr<_Tp>&) [with T = complexScalarFieldData]' /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Operators.h:249:123: required from 'void nullToZero(std::shared_ptr<_Tp>&, const GridInfo&) [with T = complexScalarFieldData]' /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Coulomb.cpp:122:47: required from here /construction/science/jdftx/jdftx-1.5.0/jdftx/core/BlasExtra.h:253:59: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'struct complex'; use assignment or value-initialization instead [-Wclass-memaccess] template void eblas_zero(int N, T* x) { memset(x, 0, N*sizeof(T)); } ~~~~~~^~~~~~~~~~~~~~~~~~~ In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ScalarField.h:31, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Coulomb.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/CoulombPeriodic.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Coulomb.cpp:20: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/scalar.h:67:8: note: 'struct complex' declared here struct complex ^~~~~~~ --- CMakeFiles/jdftxlib.dir/core/CoulombSlab.cpp.o --- [ 18%] Building CXX object CMakeFiles/jdftxlib.dir/core/CoulombSlab.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/core/CoulombSlab.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/core/CoulombSlab.cpp --- CMakeFiles/jdftxlib.dir/core/CoulombWire.cpp.o --- [ 19%] Building CXX object CMakeFiles/jdftxlib.dir/core/CoulombWire.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build 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/usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/core/ManagedMemory.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.cpp --- CMakeFiles/jdftxlib.dir/core/Operators.cpp.o --- [ 24%] Building CXX object CMakeFiles/jdftxlib.dir/core/Operators.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/core/Operators.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Operators.cpp --- CMakeFiles/jdftxlib.dir/core/RadialFunction.cpp.o --- [ 25%] Building CXX object CMakeFiles/jdftxlib.dir/core/RadialFunction.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/core/RadialFunction.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/core/RadialFunction.cpp --- CMakeFiles/jdftxlib.dir/core/Random.cpp.o --- [ 25%] Building CXX object CMakeFiles/jdftxlib.dir/core/Random.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/core/Random.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Random.cpp --- CMakeFiles/jdftxlib.dir/core/ScalarField.cpp.o --- [ 26%] Building CXX object CMakeFiles/jdftxlib.dir/core/ScalarField.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/core/ScalarField.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ScalarField.cpp --- CMakeFiles/jdftxlib.dir/core/ScalarFieldIO.cpp.o --- --- CMakeFiles/jdftxlib.dir/core/Spline.cpp.o --- --- CMakeFiles/jdftxlib.dir/core/ScalarFieldIO.cpp.o --- [ 27%] Building CXX object CMakeFiles/jdftxlib.dir/core/ScalarFieldIO.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/core/ScalarFieldIO.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ScalarFieldIO.cpp --- CMakeFiles/jdftxlib.dir/core/Spline.cpp.o --- [ 27%] Building CXX object CMakeFiles/jdftxlib.dir/core/Spline.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/core/Spline.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Spline.cpp --- CMakeFiles/jdftxlib.dir/core/Thread.cpp.o --- --- CMakeFiles/jdftxlib.dir/core/Util.cpp.o --- --- CMakeFiles/jdftxlib.dir/core/Thread.cpp.o --- [ 29%] Building CXX object CMakeFiles/jdftxlib.dir/core/Thread.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/core/Thread.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Thread.cpp --- CMakeFiles/jdftxlib.dir/core/Util.cpp.o --- [ 29%] Building CXX object CMakeFiles/jdftxlib.dir/core/Util.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/core/Util.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Util.cpp --- CMakeFiles/jdftxlib.dir/core/WignerSeitz.cpp.o --- [ 30%] Building CXX object CMakeFiles/jdftxlib.dir/core/WignerSeitz.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/core/WignerSeitz.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/core/WignerSeitz.cpp --- CMakeFiles/jdftxlib.dir/core/matrix.cpp.o --- [ 31%] Building CXX object CMakeFiles/jdftxlib.dir/core/matrix.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/core/matrix.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/core/matrix.cpp --- CMakeFiles/jdftxlib.dir/core/matrixLinalg.cpp.o --- [ 31%] Building CXX object CMakeFiles/jdftxlib.dir/core/matrixLinalg.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/core/matrixLinalg.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/core/matrixLinalg.cpp --- CMakeFiles/jdftxlib.dir/core/matrixOperators.cpp.o --- [ 32%] Building CXX object CMakeFiles/jdftxlib.dir/core/matrixOperators.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/core/matrixOperators.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/core/matrixOperators.cpp --- CMakeFiles/jdftxlib.dir/electronic/BandDavidson.cpp.o --- [ 32%] Building CXX object CMakeFiles/jdftxlib.dir/electronic/BandDavidson.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/electronic/BandDavidson.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/BandDavidson.cpp --- CMakeFiles/jdftxlib.dir/core/Operators.cpp.o --- In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:25, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ScalarField.h:33, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Operators.h:30, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Operators.cpp:20: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/BlasExtra.h: In instantiation of 'void eblas_zero(int, T*) [with T = complex]': /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:261:23: required from 'void ManagedMemory::zero() [with T = complex]' /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ScalarField.h:81:38: required from 'void FieldData::zero() [with T = complex]' /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Operators.h:247:47: required from 'void initZero(std::shared_ptr<_Tp>&) [with T = complexScalarFieldData]' /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Operators.h:249:123: required from 'void nullToZero(std::shared_ptr<_Tp>&, const GridInfo&) [with T = complexScalarFieldData]' /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Operators.cpp:85:43: required from here /construction/science/jdftx/jdftx-1.5.0/jdftx/core/BlasExtra.h:253:59: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'struct complex'; use assignment or value-initialization instead [-Wclass-memaccess] template void eblas_zero(int N, T* x) { memset(x, 0, N*sizeof(T)); } ~~~~~~^~~~~~~~~~~~~~~~~~~ In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ScalarField.h:31, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Operators.h:30, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Operators.cpp:20: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/scalar.h:67:8: note: 'struct complex' declared here struct complex ^~~~~~~ --- CMakeFiles/jdftxlib.dir/electronic/BandMinimizer.cpp.o --- [ 33%] Building CXX object CMakeFiles/jdftxlib.dir/electronic/BandMinimizer.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/electronic/BandMinimizer.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/BandMinimizer.cpp --- CMakeFiles/jdftxlib.dir/core/matrix.cpp.o --- In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:25, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/matrix.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/matrix.cpp:20: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/BlasExtra.h: In instantiation of 'void eblas_zero(int, T*) [with T = complex]': /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:261:23: required from 'void ManagedMemory::zero() [with T = complex]' /construction/science/jdftx/jdftx-1.5.0/jdftx/core/matrix.cpp:118:35: required from here /construction/science/jdftx/jdftx-1.5.0/jdftx/core/BlasExtra.h:253:59: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'struct complex'; use assignment or value-initialization instead [-Wclass-memaccess] template void eblas_zero(int N, T* x) { memset(x, 0, N*sizeof(T)); } ~~~~~~^~~~~~~~~~~~~~~~~~~ In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/vector3.h:28, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/matrix3.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/MPIUtil.h:24, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Util.h:28, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/matrix.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/matrix.cpp:20: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/scalar.h:67:8: note: 'struct complex' declared here struct complex ^~~~~~~ --- CMakeFiles/jdftxlib.dir/electronic/Basis.cpp.o --- [ 34%] Building CXX object CMakeFiles/jdftxlib.dir/electronic/Basis.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/electronic/Basis.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/Basis.cpp --- CMakeFiles/jdftxlib.dir/core/matrixOperators.cpp.o --- In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:25, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/matrix.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/matrixOperators.cpp:20: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/BlasExtra.h: In instantiation of 'void eblas_zero(int, T*) [with T = complex]': /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:261:23: required from 'void ManagedMemory::zero() [with T = complex]' /construction/science/jdftx/jdftx-1.5.0/jdftx/core/matrixOperators.cpp:283:11: required from here /construction/science/jdftx/jdftx-1.5.0/jdftx/core/BlasExtra.h:253:59: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'struct complex'; use assignment or value-initialization instead [-Wclass-memaccess] template void eblas_zero(int N, T* x) { memset(x, 0, N*sizeof(T)); } ~~~~~~^~~~~~~~~~~~~~~~~~~ In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/vector3.h:28, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/matrix3.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/MPIUtil.h:24, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Util.h:28, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/matrix.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/matrixOperators.cpp:20: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/scalar.h:67:8: note: 'struct complex' declared here struct complex ^~~~~~~ --- CMakeFiles/jdftxlib.dir/electronic/ColumnBundle.cpp.o --- [ 34%] Building CXX object CMakeFiles/jdftxlib.dir/electronic/ColumnBundle.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/electronic/ColumnBundle.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/ColumnBundle.cpp --- CMakeFiles/jdftxlib.dir/electronic/ColumnBundleOperators.cpp.o --- [ 36%] Building CXX object CMakeFiles/jdftxlib.dir/electronic/ColumnBundleOperators.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/electronic/ColumnBundleOperators.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/ColumnBundleOperators.cpp --- CMakeFiles/jdftxlib.dir/electronic/ColumnBundleTransform.cpp.o --- [ 36%] Building CXX object CMakeFiles/jdftxlib.dir/electronic/ColumnBundleTransform.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/electronic/ColumnBundleTransform.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/ColumnBundleTransform.cpp --- CMakeFiles/jdftxlib.dir/electronic/DOS.cpp.o --- [ 37%] Building CXX object CMakeFiles/jdftxlib.dir/electronic/DOS.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/electronic/DOS.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/DOS.cpp --- CMakeFiles/jdftxlib.dir/electronic/Dump.cpp.o --- [ 38%] Building CXX object CMakeFiles/jdftxlib.dir/electronic/Dump.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/electronic/Dump.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/Dump.cpp --- CMakeFiles/jdftxlib.dir/electronic/ColumnBundleOperators.cpp.o --- In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:25, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/ColumnBundle.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/ColumnBundleOperators.cpp:21: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/BlasExtra.h: In instantiation of 'void eblas_zero(int, T*) [with T = complex]': /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:261:23: required from 'void ManagedMemory::zero() [with T = complex]' /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/ColumnBundleOperators.cpp:220:41: required from here /construction/science/jdftx/jdftx-1.5.0/jdftx/core/BlasExtra.h:253:59: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'struct complex'; use assignment or value-initialization instead [-Wclass-memaccess] template void eblas_zero(int N, T* x) { memset(x, 0, N*sizeof(T)); } ~~~~~~^~~~~~~~~~~~~~~~~~~ In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/vector3.h:28, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/matrix3.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/MPIUtil.h:24, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Util.h:28, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/ColumnBundle.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/ColumnBundleOperators.cpp:21: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/scalar.h:67:8: note: 'struct complex' declared here struct complex ^~~~~~~ --- CMakeFiles/jdftxlib.dir/electronic/DumpBGW.cpp.o --- [ 38%] Building CXX object CMakeFiles/jdftxlib.dir/electronic/DumpBGW.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/electronic/DumpBGW.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/DumpBGW.cpp --- CMakeFiles/jdftxlib.dir/electronic/ColumnBundle.cpp.o --- In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:25, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ScalarField.h:33, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Coulomb.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/Everything.h:26, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/ColumnBundle.cpp:20: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/BlasExtra.h: In instantiation of 'void eblas_zero(int, T*) [with T = complex]': /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/ColumnBundle.cpp:134:73: required from here /construction/science/jdftx/jdftx-1.5.0/jdftx/core/BlasExtra.h:253:59: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'struct complex'; use assignment or value-initialization instead [-Wclass-memaccess] template void eblas_zero(int N, T* x) { memset(x, 0, N*sizeof(T)); } ~~~~~~^~~~~~~~~~~~~~~~~~~ In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/vector3.h:28, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/matrix3.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/GridInfo.h:26, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/Everything.h:24, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/ColumnBundle.cpp:20: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/scalar.h:67:8: note: 'struct complex' declared here struct complex ^~~~~~~ --- CMakeFiles/jdftxlib.dir/electronic/DumpChargedDefects.cpp.o --- [ 39%] Building CXX object CMakeFiles/jdftxlib.dir/electronic/DumpChargedDefects.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/electronic/DumpChargedDefects.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/DumpChargedDefects.cpp --- CMakeFiles/jdftxlib.dir/electronic/DumpExcitationsMoments.cpp.o --- [ 39%] Building CXX object CMakeFiles/jdftxlib.dir/electronic/DumpExcitationsMoments.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/electronic/DumpExcitationsMoments.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/DumpExcitationsMoments.cpp --- CMakeFiles/jdftxlib.dir/electronic/DumpOcean.cpp.o --- [ 40%] Building CXX object CMakeFiles/jdftxlib.dir/electronic/DumpOcean.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/electronic/DumpOcean.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/DumpOcean.cpp --- CMakeFiles/jdftxlib.dir/electronic/DumpQMC.cpp.o --- [ 41%] Building CXX object CMakeFiles/jdftxlib.dir/electronic/DumpQMC.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/electronic/DumpQMC.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/DumpQMC.cpp --- CMakeFiles/jdftxlib.dir/electronic/DumpExcitationsMoments.cpp.o --- In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:25, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/matrix.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/Dump.h:24, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/DumpExcitationsMoments.cpp:20: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/BlasExtra.h: In instantiation of 'void eblas_zero(int, T*) [with T = complex]': /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:261:23: required from 'void ManagedMemory::zero() [with T = complex]' /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/DumpExcitationsMoments.cpp:406:17: required from here /construction/science/jdftx/jdftx-1.5.0/jdftx/core/BlasExtra.h:253:59: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'struct complex'; use assignment or value-initialization instead [-Wclass-memaccess] template void eblas_zero(int N, T* x) { memset(x, 0, N*sizeof(T)); } ~~~~~~^~~~~~~~~~~~~~~~~~~ In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/vector3.h:28, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/matrix3.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/MPIUtil.h:24, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Util.h:28, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/matrix.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/Dump.h:24, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/DumpExcitationsMoments.cpp:20: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/scalar.h:67:8: note: 'struct complex' declared here struct complex ^~~~~~~ --- CMakeFiles/jdftxlib.dir/electronic/DumpSIC.cpp.o --- [ 41%] Building CXX object CMakeFiles/jdftxlib.dir/electronic/DumpSIC.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/electronic/DumpSIC.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/DumpSIC.cpp --- CMakeFiles/jdftxlib.dir/electronic/DumpChargedDefects.cpp.o --- In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:25, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/matrix.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/Dump.h:24, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/DumpChargedDefects.cpp:1: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/BlasExtra.h: In instantiation of 'void eblas_zero(int, T*) [with T = complex]': /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:261:23: required from 'void ManagedMemory::zero() [with T = complex]' /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ScalarField.h:81:38: required from 'void FieldData::zero() [with T = complex]' /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Operators.h:247:47: required from 'void initZero(std::shared_ptr<_Tp>&) [with T = ScalarFieldTildeData]' /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Operators.h:249:123: required from 'void nullToZero(std::shared_ptr<_Tp>&, const GridInfo&) [with T = ScalarFieldTildeData]' /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/DumpChargedDefects.cpp:167:26: required from here /construction/science/jdftx/jdftx-1.5.0/jdftx/core/BlasExtra.h:253:59: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'struct complex'; use assignment or value-initialization instead [-Wclass-memaccess] template void eblas_zero(int N, T* x) { memset(x, 0, N*sizeof(T)); } ~~~~~~^~~~~~~~~~~~~~~~~~~ In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/vector3.h:28, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/matrix3.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/MPIUtil.h:24, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Util.h:28, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/matrix.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/Dump.h:24, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/DumpChargedDefects.cpp:1: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/scalar.h:67:8: note: 'struct complex' declared here struct complex ^~~~~~~ --- CMakeFiles/jdftxlib.dir/electronic/ElecInfo.cpp.o --- [ 43%] Building CXX object CMakeFiles/jdftxlib.dir/electronic/ElecInfo.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/electronic/ElecInfo.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/ElecInfo.cpp --- CMakeFiles/jdftxlib.dir/electronic/ElecMinimizer.cpp.o --- [ 43%] Building CXX object CMakeFiles/jdftxlib.dir/electronic/ElecMinimizer.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/electronic/ElecMinimizer.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/ElecMinimizer.cpp --- CMakeFiles/jdftxlib.dir/electronic/ElecVars.cpp.o --- [ 44%] Building CXX object CMakeFiles/jdftxlib.dir/electronic/ElecVars.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/electronic/ElecVars.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/ElecVars.cpp --- CMakeFiles/jdftxlib.dir/electronic/ElecVars_LCAO.cpp.o --- [ 45%] Building CXX object CMakeFiles/jdftxlib.dir/electronic/ElecVars_LCAO.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/electronic/ElecVars_LCAO.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/ElecVars_LCAO.cpp --- CMakeFiles/jdftxlib.dir/electronic/ElectronScattering.cpp.o --- [ 45%] Building CXX object CMakeFiles/jdftxlib.dir/electronic/ElectronScattering.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/electronic/ElectronScattering.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/ElectronScattering.cpp --- CMakeFiles/jdftxlib.dir/electronic/Energies.cpp.o --- [ 46%] Building CXX object CMakeFiles/jdftxlib.dir/electronic/Energies.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/electronic/Energies.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/Energies.cpp --- CMakeFiles/jdftxlib.dir/electronic/Everything.cpp.o --- [ 46%] Building CXX object CMakeFiles/jdftxlib.dir/electronic/Everything.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/electronic/Everything.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/Everything.cpp --- CMakeFiles/jdftxlib.dir/electronic/ExCorr.cpp.o --- [ 47%] Building CXX object CMakeFiles/jdftxlib.dir/electronic/ExCorr.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/electronic/ExCorr.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/ExCorr.cpp --- CMakeFiles/jdftxlib.dir/electronic/ElecVars_LCAO.cpp.o --- In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:25, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ScalarField.h:33, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Coulomb.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/Everything.h:26, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/ElecVars_LCAO.cpp:20: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/BlasExtra.h: In instantiation of 'void eblas_zero(int, T*) [with T = complex]': /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:261:23: required from 'void ManagedMemory::zero() [with T = complex]' /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ScalarField.h:81:38: required from 'void FieldData::zero() [with T = complex]' /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Operators.h:247:47: required from 'void initZero(std::shared_ptr<_Tp>&) [with T = ScalarFieldTildeData]' /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Operators.h:249:123: required from 'void nullToZero(std::shared_ptr<_Tp>&, const GridInfo&) [with T = ScalarFieldTildeData]' /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ScalarFieldArray.h:149:47: required from 'void nullToZero(std::vector >&, const GridInfo&, int) [with T = ScalarFieldTildeData]' /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/ElecVars_LCAO.cpp:207:30: required from here /construction/science/jdftx/jdftx-1.5.0/jdftx/core/BlasExtra.h:253:59: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'struct complex'; use assignment or value-initialization instead [-Wclass-memaccess] template void eblas_zero(int N, T* x) { memset(x, 0, N*sizeof(T)); } ~~~~~~^~~~~~~~~~~~~~~~~~~ In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/vector3.h:28, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/matrix3.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/GridInfo.h:26, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/Everything.h:24, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/ElecVars_LCAO.cpp:20: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/scalar.h:67:8: note: 'struct complex' declared here struct complex ^~~~~~~ --- CMakeFiles/jdftxlib.dir/electronic/ExCorr_OrbitalDep_GLLBsc.cpp.o --- [ 48%] Building CXX object CMakeFiles/jdftxlib.dir/electronic/ExCorr_OrbitalDep_GLLBsc.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/electronic/ExCorr_OrbitalDep_GLLBsc.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/ExCorr_OrbitalDep_GLLBsc.cpp --- CMakeFiles/jdftxlib.dir/electronic/ExactExchange.cpp.o --- [ 48%] Building CXX object CMakeFiles/jdftxlib.dir/electronic/ExactExchange.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/electronic/ExactExchange.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/ExactExchange.cpp --- CMakeFiles/jdftxlib.dir/electronic/ElectronScattering.cpp.o --- In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:25, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/Basis.h:24, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/ElectronScattering.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/ElectronScattering.cpp:20: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/BlasExtra.h: In instantiation of 'void eblas_zero(int, T*) [with T = complex]': /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:261:23: required from 'void ManagedMemory::zero() [with T = complex]' /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/ElectronScattering.cpp:527:14: required from here /construction/science/jdftx/jdftx-1.5.0/jdftx/core/BlasExtra.h:253:59: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'struct complex'; use assignment or value-initialization instead [-Wclass-memaccess] template void eblas_zero(int N, T* x) { memset(x, 0, N*sizeof(T)); } ~~~~~~^~~~~~~~~~~~~~~~~~~ In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/vector3.h:28, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/matrix3.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/MPIUtil.h:24, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Util.h:28, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/Basis.h:24, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/ElectronScattering.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/ElectronScattering.cpp:20: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/scalar.h:67:8: note: 'struct complex' declared here struct complex ^~~~~~~ --- CMakeFiles/jdftxlib.dir/electronic/ExactExchange.cpp.o --- In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:25, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ScalarField.h:33, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/ExactExchange.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/ExactExchange.cpp:20: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/BlasExtra.h: In instantiation of 'void eblas_zero(int, T*) [with T = complex]': /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:261:23: required from 'void ManagedMemory::zero() [with T = complex]' /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/ExactExchange.cpp:80:19: required from here /construction/science/jdftx/jdftx-1.5.0/jdftx/core/BlasExtra.h:253:59: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'struct complex'; use assignment or value-initialization instead [-Wclass-memaccess] template void eblas_zero(int N, T* x) { memset(x, 0, N*sizeof(T)); } ~~~~~~^~~~~~~~~~~~~~~~~~~ In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ScalarField.h:31, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/ExactExchange.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/ExactExchange.cpp:20: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/scalar.h:67:8: note: 'struct complex' declared here struct complex ^~~~~~~ --- CMakeFiles/jdftxlib.dir/electronic/IonDynamics.cpp.o --- [ 50%] Building CXX object CMakeFiles/jdftxlib.dir/electronic/IonDynamics.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/electronic/IonDynamics.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/IonDynamics.cpp --- CMakeFiles/jdftxlib.dir/electronic/ExCorr.cpp.o --- In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:25, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ScalarField.h:33, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/VectorField.h:28, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ScalarFieldArray.h:28, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/ExCorr.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/ExCorr.cpp:20: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/BlasExtra.h: In instantiation of 'void eblas_zero(int, T*) [with T = complex]': /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:261:23: required from 'void ManagedMemory::zero() [with T = complex]' /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ScalarField.h:81:38: required from 'void FieldData::zero() [with T = complex]' /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Operators.h:247:47: required from 'void initZero(std::shared_ptr<_Tp>&) [with T = ScalarFieldTildeData]' /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Operators.h:249:123: required from 'void nullToZero(std::shared_ptr<_Tp>&, const GridInfo&) [with T = ScalarFieldTildeData]' /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/ExCorr.cpp:888:34: required from here /construction/science/jdftx/jdftx-1.5.0/jdftx/core/BlasExtra.h:253:59: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'struct complex'; use assignment or value-initialization instead [-Wclass-memaccess] template void eblas_zero(int N, T* x) { memset(x, 0, N*sizeof(T)); } ~~~~~~^~~~~~~~~~~~~~~~~~~ In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ScalarField.h:31, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/VectorField.h:28, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ScalarFieldArray.h:28, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/ExCorr.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/ExCorr.cpp:20: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/scalar.h:67:8: note: 'struct complex' declared here struct complex ^~~~~~~ --- CMakeFiles/jdftxlib.dir/electronic/IonInfo.cpp.o --- [ 50%] Building CXX object CMakeFiles/jdftxlib.dir/electronic/IonInfo.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/electronic/IonInfo.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/IonInfo.cpp --- CMakeFiles/jdftxlib.dir/electronic/IonicMinimizer.cpp.o --- [ 51%] Building CXX object CMakeFiles/jdftxlib.dir/electronic/IonicMinimizer.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/electronic/IonicMinimizer.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/IonicMinimizer.cpp --- CMakeFiles/jdftxlib.dir/electronic/LatticeMinimizer.cpp.o --- [ 52%] Building CXX object CMakeFiles/jdftxlib.dir/electronic/LatticeMinimizer.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/electronic/LatticeMinimizer.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/LatticeMinimizer.cpp --- CMakeFiles/jdftxlib.dir/electronic/Polarizability.cpp.o --- [ 52%] Building CXX object CMakeFiles/jdftxlib.dir/electronic/Polarizability.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/electronic/Polarizability.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/Polarizability.cpp --- CMakeFiles/jdftxlib.dir/electronic/IonInfo.cpp.o --- In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:25, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ScalarField.h:33, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/VectorField.h:28, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ScalarFieldArray.h:28, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/VanDerWaals.h:24, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/SpeciesInfo.h:24, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/IonInfo.h:24, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/IonInfo.cpp:21: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/BlasExtra.h: In instantiation of 'void eblas_zero(int, T*) [with T = complex]': /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:261:23: required from 'void ManagedMemory::zero() [with T = complex]' /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ScalarField.h:81:38: required from 'void FieldData::zero() [with T = complex]' /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/IonInfo.cpp:139:36: required from here /construction/science/jdftx/jdftx-1.5.0/jdftx/core/BlasExtra.h:253:59: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'struct complex'; use assignment or value-initialization instead [-Wclass-memaccess] template void eblas_zero(int N, T* x) { memset(x, 0, N*sizeof(T)); } ~~~~~~^~~~~~~~~~~~~~~~~~~ In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Spline.h:28, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/RadialFunction.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/VanDerWaals.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/SpeciesInfo.h:24, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/IonInfo.h:24, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/IonInfo.cpp:21: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/scalar.h:67:8: note: 'struct complex' declared here struct complex ^~~~~~~ --- CMakeFiles/jdftxlib.dir/electronic/RadialSchrodinger.cpp.o --- [ 53%] Building CXX object CMakeFiles/jdftxlib.dir/electronic/RadialSchrodinger.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/electronic/RadialSchrodinger.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/RadialSchrodinger.cpp --- CMakeFiles/jdftxlib.dir/electronic/SCF.cpp.o --- [ 53%] Building CXX object CMakeFiles/jdftxlib.dir/electronic/SCF.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/electronic/SCF.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/SCF.cpp --- CMakeFiles/jdftxlib.dir/electronic/Polarizability.cpp.o --- In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:25, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ScalarField.h:33, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Coulomb.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/Everything.h:26, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/Polarizability.cpp:21: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/BlasExtra.h: In instantiation of 'void eblas_zero(int, T*) [with T = complex]': /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:261:23: required from 'void ManagedMemory::zero() [with T = complex]' /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/Polarizability.cpp:90:14: required from here /construction/science/jdftx/jdftx-1.5.0/jdftx/core/BlasExtra.h:253:59: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'struct complex'; use assignment or value-initialization instead [-Wclass-memaccess] template void eblas_zero(int N, T* x) { memset(x, 0, N*sizeof(T)); } ~~~~~~^~~~~~~~~~~~~~~~~~~ In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/vector3.h:28, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/Polarizability.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/Polarizability.cpp:20: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/scalar.h:67:8: note: 'struct complex' declared here struct complex ^~~~~~~ --- CMakeFiles/jdftxlib.dir/electronic/SpeciesInfo.cpp.o --- [ 54%] Building CXX object CMakeFiles/jdftxlib.dir/electronic/SpeciesInfo.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/electronic/SpeciesInfo.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/SpeciesInfo.cpp --- CMakeFiles/jdftxlib.dir/electronic/SpeciesInfo_atomic.cpp.o --- [ 55%] Building CXX object CMakeFiles/jdftxlib.dir/electronic/SpeciesInfo_atomic.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/electronic/SpeciesInfo_atomic.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/SpeciesInfo_atomic.cpp In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:25, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ScalarField.h:33, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/VectorField.h:28, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ScalarFieldArray.h:28, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/VanDerWaals.h:24, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/SpeciesInfo.h:24, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/SpeciesInfo_atomic.cpp:20: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/BlasExtra.h: In instantiation of 'void eblas_zero(int, T*) [with T = complex]': /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/SpeciesInfo_atomic.cpp:221:64: required from here /construction/science/jdftx/jdftx-1.5.0/jdftx/core/BlasExtra.h:253:59: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'struct complex'; use assignment or value-initialization instead [-Wclass-memaccess] template void eblas_zero(int N, T* x) { memset(x, 0, N*sizeof(T)); } ~~~~~~^~~~~~~~~~~~~~~~~~~ In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Spline.h:28, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/RadialFunction.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/VanDerWaals.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/SpeciesInfo.h:24, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/SpeciesInfo_atomic.cpp:20: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/scalar.h:67:8: note: 'struct complex' declared here struct complex ^~~~~~~ --- CMakeFiles/jdftxlib.dir/electronic/SpeciesInfo_augment.cpp.o --- [ 55%] Building CXX object CMakeFiles/jdftxlib.dir/electronic/SpeciesInfo_augment.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/electronic/SpeciesInfo_augment.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/SpeciesInfo_augment.cpp --- CMakeFiles/jdftxlib.dir/electronic/SpeciesInfo_core.cpp.o --- [ 56%] Building CXX object CMakeFiles/jdftxlib.dir/electronic/SpeciesInfo_core.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/electronic/SpeciesInfo_core.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/SpeciesInfo_core.cpp --- CMakeFiles/jdftxlib.dir/electronic/SpeciesInfo_energy.cpp.o --- [ 56%] Building CXX object CMakeFiles/jdftxlib.dir/electronic/SpeciesInfo_energy.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/electronic/SpeciesInfo_energy.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/SpeciesInfo_energy.cpp --- CMakeFiles/jdftxlib.dir/electronic/SpeciesInfo_augment.cpp.o --- In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:25, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ScalarField.h:33, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/VectorField.h:28, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ScalarFieldArray.h:28, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/VanDerWaals.h:24, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/SpeciesInfo.h:24, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/SpeciesInfo_augment.cpp:20: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/BlasExtra.h: In instantiation of 'void eblas_zero(int, T*) [with T = complex]': /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:261:23: required from 'void ManagedMemory::zero() [with T = complex]' /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/SpeciesInfo_augment.cpp:102:12: required from here /construction/science/jdftx/jdftx-1.5.0/jdftx/core/BlasExtra.h:253:59: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'struct complex'; use assignment or value-initialization instead [-Wclass-memaccess] template void eblas_zero(int N, T* x) { memset(x, 0, N*sizeof(T)); } ~~~~~~^~~~~~~~~~~~~~~~~~~ In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Spline.h:28, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/RadialFunction.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/VanDerWaals.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/SpeciesInfo.h:24, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/SpeciesInfo_augment.cpp:20: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/scalar.h:67:8: note: 'struct complex' declared here struct complex ^~~~~~~ --- CMakeFiles/jdftxlib.dir/electronic/SpeciesInfo_internal.cpp.o --- [ 58%] Building CXX object CMakeFiles/jdftxlib.dir/electronic/SpeciesInfo_internal.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/electronic/SpeciesInfo_internal.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/SpeciesInfo_internal.cpp --- CMakeFiles/jdftxlib.dir/electronic/SpeciesInfo_readFhi.cpp.o --- [ 59%] Building CXX object CMakeFiles/jdftxlib.dir/electronic/SpeciesInfo_readFhi.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/electronic/SpeciesInfo_readFhi.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/SpeciesInfo_readFhi.cpp --- CMakeFiles/jdftxlib.dir/electronic/SpeciesInfo_readUPF.cpp.o --- [ 59%] Building CXX object CMakeFiles/jdftxlib.dir/electronic/SpeciesInfo_readUPF.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/electronic/SpeciesInfo_readUPF.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/SpeciesInfo_readUPF.cpp --- CMakeFiles/jdftxlib.dir/electronic/SpeciesInfo_readUspp.cpp.o --- [ 60%] Building CXX object CMakeFiles/jdftxlib.dir/electronic/SpeciesInfo_readUspp.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/electronic/SpeciesInfo_readUspp.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/SpeciesInfo_readUspp.cpp --- CMakeFiles/jdftxlib.dir/electronic/SpeciesInfo_energy.cpp.o --- In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:25, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ScalarField.h:33, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/VectorField.h:28, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ScalarFieldArray.h:28, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/VanDerWaals.h:24, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/SpeciesInfo.h:24, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/SpeciesInfo_energy.cpp:20: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/BlasExtra.h: In instantiation of 'void eblas_zero(int, T*) [with T = complex]': /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:261:23: required from 'void ManagedMemory::zero() [with T = complex]' /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ScalarField.h:81:38: required from 'void FieldData::zero() [with T = complex]' /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Operators.h:247:47: required from 'void initZero(std::shared_ptr<_Tp>&) [with T = ScalarFieldTildeData]' /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Operators.h:249:123: required from 'void nullToZero(std::shared_ptr<_Tp>&, const GridInfo&) [with T = ScalarFieldTildeData]' /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/SpeciesInfo_energy.cpp:190:50: required from here /construction/science/jdftx/jdftx-1.5.0/jdftx/core/BlasExtra.h:253:59: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'struct complex'; use assignment or value-initialization instead [-Wclass-memaccess] template void eblas_zero(int N, T* x) { memset(x, 0, N*sizeof(T)); } ~~~~~~^~~~~~~~~~~~~~~~~~~ In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Spline.h:28, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/RadialFunction.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/VanDerWaals.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/SpeciesInfo.h:24, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/SpeciesInfo_energy.cpp:20: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/scalar.h:67:8: note: 'struct complex' declared here struct complex ^~~~~~~ --- CMakeFiles/jdftxlib.dir/electronic/Symmetries.cpp.o --- [ 60%] Building CXX object CMakeFiles/jdftxlib.dir/electronic/Symmetries.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/electronic/Symmetries.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/Symmetries.cpp --- CMakeFiles/jdftxlib.dir/electronic/TetrahedralDOS.cpp.o --- [ 61%] Building CXX object CMakeFiles/jdftxlib.dir/electronic/TetrahedralDOS.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/electronic/TetrahedralDOS.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/TetrahedralDOS.cpp --- CMakeFiles/jdftxlib.dir/electronic/VanDerWaals.cpp.o --- [ 62%] Building CXX object CMakeFiles/jdftxlib.dir/electronic/VanDerWaals.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/electronic/VanDerWaals.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/VanDerWaals.cpp --- CMakeFiles/jdftxlib.dir/electronic/Vibrations.cpp.o --- [ 62%] Building CXX object CMakeFiles/jdftxlib.dir/electronic/Vibrations.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/electronic/Vibrations.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/Vibrations.cpp --- CMakeFiles/jdftxlib.dir/electronic/symbols.cpp.o --- [ 63%] Building CXX object CMakeFiles/jdftxlib.dir/electronic/symbols.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/electronic/symbols.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/symbols.cpp --- CMakeFiles/jdftxlib.dir/fluid/ConvCoupling.cpp.o --- [ 63%] Building CXX object CMakeFiles/jdftxlib.dir/fluid/ConvCoupling.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/fluid/ConvCoupling.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/ConvCoupling.cpp --- CMakeFiles/jdftxlib.dir/electronic/VanDerWaals.cpp.o --- /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/VanDerWaals.cpp: In member function 'double VanDerWaals::energyAndGrad(const std::vector > >&, const ScalarFieldTildeArray&, const std::vector >&, double, ScalarFieldTildeArray*, IonicGradient*) const': /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/VanDerWaals.cpp:194:69: warning: 'void* memcpy(void*, const void*, size_t)' copying an object of non-trivial type 'struct complex' from an array of 'const class vector3<>' [-Wclass-memaccess] memcpy(atposTemp.data(), atpos[i].data(), sizeof(vector3<>)*nAtoms); ^ In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Spline.h:28, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/RadialFunction.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/VanDerWaals.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/VanDerWaals.cpp:20: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/scalar.h:67:8: note: 'struct complex' declared here struct complex ^~~~~~~ In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:25, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ScalarField.h:33, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/VectorField.h:28, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ScalarFieldArray.h:28, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/VanDerWaals.h:24, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/VanDerWaals.cpp:20: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/BlasExtra.h: In instantiation of 'void eblas_zero(int, T*) [with T = complex]': /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:261:23: required from 'void ManagedMemory::zero() [with T = complex]' /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ScalarField.h:81:38: required from 'void FieldData::zero() [with T = complex]' /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Operators.h:247:47: required from 'void initZero(std::shared_ptr<_Tp>&) [with T = ScalarFieldTildeData]' /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Operators.h:249:123: required from 'void nullToZero(std::shared_ptr<_Tp>&, const GridInfo&) [with T = ScalarFieldTildeData]' /construction/science/jdftx/jdftx-1.5.0/jdftx/core/VectorField.h:95:78: required from 'void nullToZero(ScalarFieldMultiplet&, const GridInfo&) [with T = ScalarFieldTildeData; int N = 3]' /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/VanDerWaals.cpp:210:60: required from here /construction/science/jdftx/jdftx-1.5.0/jdftx/core/BlasExtra.h:253:59: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'struct complex'; use assignment or value-initialization instead [-Wclass-memaccess] template void eblas_zero(int N, T* x) { memset(x, 0, N*sizeof(T)); } ~~~~~~^~~~~~~~~~~~~~~~~~~ In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Spline.h:28, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/RadialFunction.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/VanDerWaals.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/VanDerWaals.cpp:20: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/scalar.h:67:8: note: 'struct complex' declared here struct complex ^~~~~~~ --- CMakeFiles/jdftxlib.dir/fluid/Fex.cpp.o --- [ 65%] Building CXX object CMakeFiles/jdftxlib.dir/fluid/Fex.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/fluid/Fex.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/Fex.cpp --- CMakeFiles/jdftxlib.dir/fluid/Fex_H2O_BondedVoids.cpp.o --- [ 66%] Building CXX object CMakeFiles/jdftxlib.dir/fluid/Fex_H2O_BondedVoids.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/fluid/Fex_H2O_BondedVoids.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/Fex_H2O_BondedVoids.cpp --- CMakeFiles/jdftxlib.dir/fluid/Fex_H2O_FittedCorrelations.cpp.o --- [ 66%] Building CXX object CMakeFiles/jdftxlib.dir/fluid/Fex_H2O_FittedCorrelations.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/fluid/Fex_H2O_FittedCorrelations.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/Fex_H2O_FittedCorrelations.cpp --- CMakeFiles/jdftxlib.dir/fluid/Fex_LJ.cpp.o --- [ 67%] Building CXX object CMakeFiles/jdftxlib.dir/fluid/Fex_LJ.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/fluid/Fex_LJ.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/Fex_LJ.cpp --- CMakeFiles/jdftxlib.dir/fluid/Fex_ScalarEOS.cpp.o --- [ 67%] Building CXX object CMakeFiles/jdftxlib.dir/fluid/Fex_ScalarEOS.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/fluid/Fex_ScalarEOS.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/Fex_ScalarEOS.cpp --- CMakeFiles/jdftxlib.dir/fluid/FluidComponent.cpp.o --- [ 68%] Building CXX object CMakeFiles/jdftxlib.dir/fluid/FluidComponent.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/fluid/FluidComponent.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/FluidComponent.cpp --- CMakeFiles/jdftxlib.dir/fluid/FluidMixture.cpp.o --- [ 69%] Building CXX object CMakeFiles/jdftxlib.dir/fluid/FluidMixture.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/fluid/FluidMixture.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/FluidMixture.cpp --- CMakeFiles/jdftxlib.dir/fluid/FluidMixtureCompute.cpp.o --- [ 69%] Building CXX object CMakeFiles/jdftxlib.dir/fluid/FluidMixtureCompute.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/fluid/FluidMixtureCompute.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/FluidMixtureCompute.cpp --- CMakeFiles/jdftxlib.dir/fluid/FluidSolver.cpp.o --- [ 70%] Building CXX object CMakeFiles/jdftxlib.dir/fluid/FluidSolver.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/fluid/FluidSolver.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/FluidSolver.cpp --- CMakeFiles/jdftxlib.dir/fluid/FluidSolverParams.cpp.o --- [ 70%] Building CXX object CMakeFiles/jdftxlib.dir/fluid/FluidSolverParams.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/fluid/FluidSolverParams.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/FluidSolverParams.cpp --- CMakeFiles/jdftxlib.dir/fluid/Fmix.cpp.o --- [ 72%] Building CXX object CMakeFiles/jdftxlib.dir/fluid/Fmix.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/fluid/Fmix.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/Fmix.cpp --- CMakeFiles/jdftxlib.dir/fluid/FluidMixtureCompute.cpp.o --- In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:25, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ScalarField.h:33, from /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/Molecule.h:24, from /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/FluidComponent.h:24, from /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/FluidMixture.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/FluidMixtureCompute.cpp:20: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/BlasExtra.h: In instantiation of 'void eblas_zero(int, T*) [with T = complex]': /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:261:23: required from 'void ManagedMemory::zero() [with T = complex]' /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ScalarField.h:81:38: required from 'void FieldData::zero() [with T = complex]' /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Operators.h:247:47: required from 'void initZero(std::shared_ptr<_Tp>&) [with T = ScalarFieldTildeData]' /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Operators.h:249:123: required from 'void nullToZero(std::shared_ptr<_Tp>&, const GridInfo&) [with T = ScalarFieldTildeData]' /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/FluidMixtureCompute.cpp:450:45: required from here /construction/science/jdftx/jdftx-1.5.0/jdftx/core/BlasExtra.h:253:59: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'struct complex'; use assignment or value-initialization instead [-Wclass-memaccess] template void eblas_zero(int N, T* x) { memset(x, 0, N*sizeof(T)); } ~~~~~~^~~~~~~~~~~~~~~~~~~ In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/vector3.h:28, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/matrix3.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/MPIUtil.h:24, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Util.h:28, from /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/S2quad.h:27, from /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/FluidComponent.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/FluidMixture.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/FluidMixtureCompute.cpp:20: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/scalar.h:67:8: note: 'struct complex' declared here struct complex ^~~~~~~ --- CMakeFiles/jdftxlib.dir/fluid/IdealGas.cpp.o --- [ 73%] Building CXX object CMakeFiles/jdftxlib.dir/fluid/IdealGas.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/fluid/IdealGas.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/IdealGas.cpp --- CMakeFiles/jdftxlib.dir/fluid/IdealGasMonoatomic.cpp.o --- [ 73%] Building CXX object CMakeFiles/jdftxlib.dir/fluid/IdealGasMonoatomic.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/fluid/IdealGasMonoatomic.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/IdealGasMonoatomic.cpp --- CMakeFiles/jdftxlib.dir/fluid/FluidMixture.cpp.o --- In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:25, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ScalarField.h:33, from /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/Molecule.h:24, from /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/FluidComponent.h:24, from /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/FluidMixture.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/FluidMixture.cpp:20: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/BlasExtra.h: In instantiation of 'void eblas_zero(int, T*) [with T = complex]': /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:261:23: required from 'void ManagedMemory::zero() [with T = complex]' /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ScalarField.h:81:38: required from 'void FieldData::zero() [with T = complex]' /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Operators.h:247:47: required from 'void initZero(std::shared_ptr<_Tp>&) [with T = ScalarFieldTildeData]' /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Operators.h:249:123: required from 'void nullToZero(std::shared_ptr<_Tp>&, const GridInfo&) [with T = ScalarFieldTildeData]' /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ScalarFieldArray.h:149:47: required from 'void nullToZero(std::vector >&, const GridInfo&, int) [with T = ScalarFieldTildeData]' /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/FluidMixture.cpp:174:27: required from here /construction/science/jdftx/jdftx-1.5.0/jdftx/core/BlasExtra.h:253:59: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'struct complex'; use assignment or value-initialization instead [-Wclass-memaccess] template void eblas_zero(int N, T* x) { memset(x, 0, N*sizeof(T)); } ~~~~~~^~~~~~~~~~~~~~~~~~~ In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/vector3.h:28, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/matrix3.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/MPIUtil.h:24, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Util.h:28, from /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/S2quad.h:27, from /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/FluidComponent.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/FluidMixture.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/FluidMixture.cpp:20: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/scalar.h:67:8: note: 'struct complex' declared here struct complex ^~~~~~~ --- CMakeFiles/jdftxlib.dir/fluid/IdealGasMuEps.cpp.o --- [ 74%] Building CXX object CMakeFiles/jdftxlib.dir/fluid/IdealGasMuEps.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/fluid/IdealGasMuEps.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/IdealGasMuEps.cpp --- CMakeFiles/jdftxlib.dir/fluid/IdealGasPomega.cpp.o --- [ 74%] Building CXX object CMakeFiles/jdftxlib.dir/fluid/IdealGasPomega.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/fluid/IdealGasPomega.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/IdealGasPomega.cpp --- CMakeFiles/jdftxlib.dir/fluid/IdealGasPsiAlpha.cpp.o --- [ 75%] Building CXX object CMakeFiles/jdftxlib.dir/fluid/IdealGasPsiAlpha.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/fluid/IdealGasPsiAlpha.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/IdealGasPsiAlpha.cpp --- CMakeFiles/jdftxlib.dir/fluid/LinearPCM.cpp.o --- [ 76%] Building CXX object CMakeFiles/jdftxlib.dir/fluid/LinearPCM.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/fluid/LinearPCM.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/LinearPCM.cpp --- CMakeFiles/jdftxlib.dir/fluid/MixedFMT.cpp.o --- [ 76%] Building CXX object CMakeFiles/jdftxlib.dir/fluid/MixedFMT.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/fluid/MixedFMT.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/MixedFMT.cpp --- CMakeFiles/jdftxlib.dir/fluid/Molecule.cpp.o --- [ 77%] Building CXX object CMakeFiles/jdftxlib.dir/fluid/Molecule.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/fluid/Molecule.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/Molecule.cpp --- CMakeFiles/jdftxlib.dir/fluid/NonlinearPCM.cpp.o --- [ 77%] Building CXX object CMakeFiles/jdftxlib.dir/fluid/NonlinearPCM.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/fluid/NonlinearPCM.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/NonlinearPCM.cpp --- CMakeFiles/jdftxlib.dir/fluid/PCM.cpp.o --- [ 79%] Building CXX object CMakeFiles/jdftxlib.dir/fluid/PCM.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/fluid/PCM.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/PCM.cpp --- CMakeFiles/jdftxlib.dir/fluid/PCM_internal.cpp.o --- [ 80%] Building CXX object CMakeFiles/jdftxlib.dir/fluid/PCM_internal.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/fluid/PCM_internal.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/PCM_internal.cpp --- CMakeFiles/jdftxlib.dir/fluid/LinearPCM.cpp.o --- In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:25, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ScalarField.h:33, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Coulomb.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/Everything.h:26, from /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/LinearPCM.cpp:20: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/BlasExtra.h: In instantiation of 'void eblas_zero(int, T*) [with T = complex]': /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:261:23: required from 'void ManagedMemory::zero() [with T = complex]' /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ScalarField.h:81:38: required from 'void FieldData::zero() [with T = complex]' /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Operators.h:247:47: required from 'void initZero(std::shared_ptr<_Tp>&) [with T = ScalarFieldTildeData]' /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Operators.h:249:123: required from 'void nullToZero(std::shared_ptr<_Tp>&, const GridInfo&) [with T = ScalarFieldTildeData]' /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/LinearPCM.cpp:79:36: required from here /construction/science/jdftx/jdftx-1.5.0/jdftx/core/BlasExtra.h:253:59: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'struct complex'; use assignment or value-initialization instead [-Wclass-memaccess] template void eblas_zero(int N, T* x) { memset(x, 0, N*sizeof(T)); } ~~~~~~^~~~~~~~~~~~~~~~~~~ In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/vector3.h:28, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/matrix3.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/GridInfo.h:26, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/Everything.h:24, from /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/LinearPCM.cpp:20: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/scalar.h:67:8: note: 'struct complex' declared here struct complex ^~~~~~~ --- CMakeFiles/jdftxlib.dir/fluid/S2quad.cpp.o --- [ 80%] Building CXX object CMakeFiles/jdftxlib.dir/fluid/S2quad.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/fluid/S2quad.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/S2quad.cpp --- CMakeFiles/jdftxlib.dir/fluid/SO3quad.cpp.o --- [ 81%] Building CXX object CMakeFiles/jdftxlib.dir/fluid/SO3quad.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/fluid/SO3quad.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/SO3quad.cpp --- CMakeFiles/jdftxlib.dir/fluid/SaLSA.cpp.o --- [ 81%] Building CXX object CMakeFiles/jdftxlib.dir/fluid/SaLSA.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/fluid/SaLSA.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/SaLSA.cpp --- CMakeFiles/jdftxlib.dir/fluid/TranslationOperator.cpp.o --- [ 82%] Building CXX object CMakeFiles/jdftxlib.dir/fluid/TranslationOperator.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/fluid/TranslationOperator.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/TranslationOperator.cpp --- CMakeFiles/jdftxlib.dir/fluid/NonlinearPCM.cpp.o --- In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:25, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ScalarField.h:33, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Coulomb.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/Everything.h:26, from /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/NonlinearPCM.cpp:20: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/BlasExtra.h: In instantiation of 'void eblas_zero(int, T*) [with T = complex]': /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:261:23: required from 'void ManagedMemory::zero() [with T = complex]' /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ScalarField.h:81:38: required from 'void FieldData::zero() [with T = complex]' /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Operators.h:247:47: required from 'void initZero(std::shared_ptr<_Tp>&) [with T = ScalarFieldTildeData]' /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Operators.h:249:123: required from 'void nullToZero(std::shared_ptr<_Tp>&, const GridInfo&) [with T = ScalarFieldTildeData]' /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/NonlinearPCM.cpp:363:22: required from here /construction/science/jdftx/jdftx-1.5.0/jdftx/core/BlasExtra.h:253:59: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'struct complex'; use assignment or value-initialization instead [-Wclass-memaccess] template void eblas_zero(int N, T* x) { memset(x, 0, N*sizeof(T)); } ~~~~~~^~~~~~~~~~~~~~~~~~~ In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/vector3.h:28, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/matrix3.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/GridInfo.h:26, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/Everything.h:24, from /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/NonlinearPCM.cpp:20: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/scalar.h:67:8: note: 'struct complex' declared here struct complex ^~~~~~~ --- CMakeFiles/jdftxlib.dir/fluid/PCM.cpp.o --- In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:25, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ScalarField.h:33, from /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/FluidSolver.h:27, from /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/PCM.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/PCM.cpp:20: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/BlasExtra.h: In instantiation of 'void eblas_zero(int, T*) [with T = complex]': /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:261:23: required from 'void ManagedMemory::zero() [with T = complex]' /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ScalarField.h:81:38: required from 'void FieldData::zero() [with T = complex]' /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Operators.h:247:47: required from 'void initZero(std::shared_ptr<_Tp>&) [with T = ScalarFieldTildeData]' /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Operators.h:249:123: required from 'void nullToZero(std::shared_ptr<_Tp>&, const GridInfo&) [with T = ScalarFieldTildeData]' /construction/science/jdftx/jdftx-1.5.0/jdftx/core/VectorField.h:95:78: required from 'void nullToZero(ScalarFieldMultiplet&, const GridInfo&) [with T = ScalarFieldTildeData; int N = 3]' /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/PCM.cpp:492:61: required from here /construction/science/jdftx/jdftx-1.5.0/jdftx/core/BlasExtra.h:253:59: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'struct complex'; use assignment or value-initialization instead [-Wclass-memaccess] template void eblas_zero(int N, T* x) { memset(x, 0, N*sizeof(T)); } ~~~~~~^~~~~~~~~~~~~~~~~~~ In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ScalarField.h:31, from /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/FluidSolver.h:27, from /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/PCM.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/PCM.cpp:20: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/scalar.h:67:8: note: 'struct complex' declared here struct complex ^~~~~~~ --- CMakeFiles/jdftxlib.dir/fluid/VDWCoupling.cpp.o --- [ 83%] Building CXX object CMakeFiles/jdftxlib.dir/fluid/VDWCoupling.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -Djdftxlib_EXPORTS -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -std=c++0x -o CMakeFiles/jdftxlib.dir/fluid/VDWCoupling.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/VDWCoupling.cpp --- CMakeFiles/jdftxlib.dir/fluid/SaLSA.cpp.o --- In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:25, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ScalarField.h:33, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Coulomb.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/Everything.h:26, from /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/SaLSA.cpp:20: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/BlasExtra.h: In instantiation of 'void eblas_zero(int, T*) [with T = complex]': /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:261:23: required from 'void ManagedMemory::zero() [with T = complex]' /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ScalarField.h:81:38: required from 'void FieldData::zero() [with T = complex]' /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Operators.h:247:47: required from 'void initZero(std::shared_ptr<_Tp>&) [with T = ScalarFieldTildeData]' /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Operators.h:249:123: required from 'void nullToZero(std::shared_ptr<_Tp>&, const GridInfo&) [with T = ScalarFieldTildeData]' /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/SaLSA.cpp:199:28: required from here /construction/science/jdftx/jdftx-1.5.0/jdftx/core/BlasExtra.h:253:59: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'struct complex'; use assignment or value-initialization instead [-Wclass-memaccess] template void eblas_zero(int N, T* x) { memset(x, 0, N*sizeof(T)); } ~~~~~~^~~~~~~~~~~~~~~~~~~ In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/vector3.h:28, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/matrix3.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/GridInfo.h:26, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/Everything.h:24, from /construction/science/jdftx/jdftx-1.5.0/jdftx/fluid/SaLSA.cpp:20: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/scalar.h:67:8: note: 'struct complex' declared here struct complex ^~~~~~~ --- libjdftx.so --- [ 83%] Linking CXX shared library libjdftx.so /usr/local/bin/cmake -E cmake_link_script CMakeFiles/jdftxlib.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wl,-rpath=/usr/local/lib/gcc8 -Wl,-rpath -Wl,/usr/local/lib -L/usr/local/lib/gcc8 -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -L/usr/local/lib -shared -Wl,-soname,libjdftx.so -o libjdftx.so CMakeFiles/jdftxlib.dir/commands/command.cpp.o CMakeFiles/jdftxlib.dir/commands/coulomb_interaction.cpp.o CMakeFiles/jdftxlib.dir/commands/debug.cpp.o 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CMakeFiles/jdftxlib.dir/electronic/ElecVars.cpp.o CMakeFiles/jdftxlib.dir/electronic/ElecVars_LCAO.cpp.o CMakeFiles/jdftxlib.dir/electronic/ElectronScattering.cpp.o CMakeFiles/jdftxlib.dir/electronic/Energies.cpp.o CMakeFiles/jdftxlib.dir/electronic/Everything.cpp.o CMakeFiles/jdftxlib.dir/electronic/ExCorr.cpp.o CMakeFiles/jdftxlib.dir/electronic/ExCorr_OrbitalDep_GLLBsc.cpp.o CMakeFiles/jdftxlib.dir/electronic/ExactExchange.cpp.o CMakeFiles/jdftxlib.dir/electronic/IonDynamics.cpp.o CMakeFiles/jdftxlib.dir/electronic/IonInfo.cpp.o CMakeFiles/jdftxlib.dir/electronic/IonicMinimizer.cpp.o CMakeFiles/jdftxlib.dir/electronic/LatticeMinimizer.cpp.o CMakeFiles/jdftxlib.dir/electronic/Polarizability.cpp.o CMakeFiles/jdftxlib.dir/electronic/RadialSchrodinger.cpp.o CMakeFiles/jdftxlib.dir/electronic/SCF.cpp.o CMakeFiles/jdftxlib.dir/electronic/SpeciesInfo.cpp.o CMakeFiles/jdftxlib.dir/electronic/SpeciesInfo_atomic.cpp.o CMakeFiles/jdftxlib.dir/electronic/SpeciesInfo_augment.cpp.o CMakeFiles/jdftxlib.dir/electronic/SpeciesInfo_core.cpp.o CMakeFiles/jdftxlib.dir/electronic/SpeciesInfo_energy.cpp.o CMakeFiles/jdftxlib.dir/electronic/SpeciesInfo_internal.cpp.o CMakeFiles/jdftxlib.dir/electronic/SpeciesInfo_readFhi.cpp.o CMakeFiles/jdftxlib.dir/electronic/SpeciesInfo_readUPF.cpp.o CMakeFiles/jdftxlib.dir/electronic/SpeciesInfo_readUspp.cpp.o CMakeFiles/jdftxlib.dir/electronic/Symmetries.cpp.o CMakeFiles/jdftxlib.dir/electronic/TetrahedralDOS.cpp.o CMakeFiles/jdftxlib.dir/electronic/VanDerWaals.cpp.o CMakeFiles/jdftxlib.dir/electronic/Vibrations.cpp.o CMakeFiles/jdftxlib.dir/electronic/symbols.cpp.o CMakeFiles/jdftxlib.dir/fluid/ConvCoupling.cpp.o CMakeFiles/jdftxlib.dir/fluid/Fex.cpp.o CMakeFiles/jdftxlib.dir/fluid/Fex_H2O_BondedVoids.cpp.o CMakeFiles/jdftxlib.dir/fluid/Fex_H2O_FittedCorrelations.cpp.o CMakeFiles/jdftxlib.dir/fluid/Fex_LJ.cpp.o CMakeFiles/jdftxlib.dir/fluid/Fex_ScalarEOS.cpp.o CMakeFiles/jdftxlib.dir/fluid/FluidComponent.cpp.o CMakeFiles/jdftxlib.dir/fluid/FluidMixture.cpp.o CMakeFiles/jdftxlib.dir/fluid/FluidMixtureCompute.cpp.o CMakeFiles/jdftxlib.dir/fluid/FluidSolver.cpp.o CMakeFiles/jdftxlib.dir/fluid/FluidSolverParams.cpp.o CMakeFiles/jdftxlib.dir/fluid/Fmix.cpp.o CMakeFiles/jdftxlib.dir/fluid/IdealGas.cpp.o CMakeFiles/jdftxlib.dir/fluid/IdealGasMonoatomic.cpp.o CMakeFiles/jdftxlib.dir/fluid/IdealGasMuEps.cpp.o CMakeFiles/jdftxlib.dir/fluid/IdealGasPomega.cpp.o CMakeFiles/jdftxlib.dir/fluid/IdealGasPsiAlpha.cpp.o CMakeFiles/jdftxlib.dir/fluid/LinearPCM.cpp.o CMakeFiles/jdftxlib.dir/fluid/MixedFMT.cpp.o CMakeFiles/jdftxlib.dir/fluid/Molecule.cpp.o CMakeFiles/jdftxlib.dir/fluid/NonlinearPCM.cpp.o CMakeFiles/jdftxlib.dir/fluid/PCM.cpp.o CMakeFiles/jdftxlib.dir/fluid/PCM_internal.cpp.o CMakeFiles/jdftxlib.dir/fluid/S2quad.cpp.o CMakeFiles/jdftxlib.dir/fluid/SO3quad.cpp.o CMakeFiles/jdftxlib.dir/fluid/SaLSA.cpp.o CMakeFiles/jdftxlib.dir/fluid/TranslationOperator.cpp.o CMakeFiles/jdftxlib.dir/fluid/VDWCoupling.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib /usr/local/lib/libmpicxx.so /usr/local/lib/libmpi.so /usr/local/lib/libgsl.so /usr/local/lib/libfftw3_threads.so /usr/local/lib/libfftw3.so /usr/local/lib/libcblas.so -llapack -lblas -pthread /usr/local/lib/libxc.so -lexecinfo /usr/local/bin/ld: /usr/lib/libc.so: .dynsym local symbol at index 8 (>= sh_info of 6) [ 84%] Built target jdftxlib --- CMakeFiles/jdftx.dir/all --- --- CMakeFiles/phonon.dir/all --- --- CMakeFiles/wannier.dir/all --- --- CMakeFiles/jdftx.dir/all --- /usr/bin/make -f CMakeFiles/jdftx.dir/build.make CMakeFiles/jdftx.dir/depend --- CMakeFiles/phonon.dir/all --- /usr/bin/make -f CMakeFiles/phonon.dir/build.make CMakeFiles/phonon.dir/depend --- CMakeFiles/wannier.dir/all --- /usr/bin/make -f CMakeFiles/wannier.dir/build.make CMakeFiles/wannier.dir/depend --- CMakeFiles/jdftx.dir/all --- --- CMakeFiles/jdftx.dir/depend --- --- CMakeFiles/phonon.dir/all --- --- CMakeFiles/phonon.dir/depend --- --- CMakeFiles/wannier.dir/all --- --- CMakeFiles/wannier.dir/depend --- --- CMakeFiles/jdftx.dir/all --- cd /construction/science/jdftx/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/jdftx/jdftx-1.5.0/jdftx /construction/science/jdftx/jdftx-1.5.0/jdftx /construction/science/jdftx/.build /construction/science/jdftx/.build /construction/science/jdftx/.build/CMakeFiles/jdftx.dir/DependInfo.cmake --- CMakeFiles/phonon.dir/all --- cd /construction/science/jdftx/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/jdftx/jdftx-1.5.0/jdftx /construction/science/jdftx/jdftx-1.5.0/jdftx /construction/science/jdftx/.build /construction/science/jdftx/.build /construction/science/jdftx/.build/CMakeFiles/phonon.dir/DependInfo.cmake --- CMakeFiles/wannier.dir/all --- cd /construction/science/jdftx/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/jdftx/jdftx-1.5.0/jdftx /construction/science/jdftx/jdftx-1.5.0/jdftx /construction/science/jdftx/.build /construction/science/jdftx/.build /construction/science/jdftx/.build/CMakeFiles/wannier.dir/DependInfo.cmake --- CMakeFiles/jdftx.dir/all --- Scanning dependencies of target jdftx /usr/bin/make -f CMakeFiles/jdftx.dir/build.make CMakeFiles/jdftx.dir/build --- CMakeFiles/phonon.dir/all --- Scanning dependencies of target phonon /usr/bin/make -f CMakeFiles/phonon.dir/build.make CMakeFiles/phonon.dir/build --- CMakeFiles/wannier.dir/all --- Scanning dependencies of target wannier /usr/bin/make -f CMakeFiles/wannier.dir/build.make CMakeFiles/wannier.dir/build --- CMakeFiles/phonon.dir/all --- --- CMakeFiles/phonon.dir/phonon/Phonon.cpp.o --- --- CMakeFiles/phonon.dir/phonon/Phonon_init.cpp.o --- --- CMakeFiles/phonon.dir/phonon/Phonon_supercell.cpp.o --- --- CMakeFiles/phonon.dir/phonon/commands.cpp.o --- --- CMakeFiles/phonon.dir/phonon/main.cpp.o --- --- CMakeFiles/jdftx.dir/all --- --- CMakeFiles/jdftx.dir/jdftx.cpp.o --- [ 84%] Building CXX object CMakeFiles/jdftx.dir/jdftx.cpp.o --- CMakeFiles/phonon.dir/all --- --- CMakeFiles/phonon.dir/phonon/commands.cpp.o --- [ 84%] Building CXX object CMakeFiles/phonon.dir/phonon/commands.cpp.o --- CMakeFiles/jdftx.dir/all --- /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++0x -o CMakeFiles/jdftx.dir/jdftx.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/jdftx.cpp --- CMakeFiles/phonon.dir/all --- /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++0x -o CMakeFiles/phonon.dir/phonon/commands.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/phonon/commands.cpp --- CMakeFiles/phonon.dir/phonon/Phonon.cpp.o --- [ 84%] Building CXX object CMakeFiles/phonon.dir/phonon/Phonon.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++0x -o CMakeFiles/phonon.dir/phonon/Phonon.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/phonon/Phonon.cpp --- CMakeFiles/phonon.dir/phonon/Phonon_supercell.cpp.o --- [ 86%] Building CXX object CMakeFiles/phonon.dir/phonon/Phonon_supercell.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++0x -o CMakeFiles/phonon.dir/phonon/Phonon_supercell.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/phonon/Phonon_supercell.cpp --- CMakeFiles/wannier.dir/all --- --- CMakeFiles/wannier.dir/wannier/Wannier.cpp.o --- --- CMakeFiles/wannier.dir/wannier/WannierMinimizer.cpp.o --- --- CMakeFiles/wannier.dir/wannier/WannierMinimizerFD.cpp.o --- --- CMakeFiles/wannier.dir/wannier/WannierMinimizerRS.cpp.o --- --- CMakeFiles/phonon.dir/all --- --- CMakeFiles/phonon.dir/phonon/main.cpp.o --- [ 87%] Building CXX object CMakeFiles/phonon.dir/phonon/main.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++0x -o CMakeFiles/phonon.dir/phonon/main.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/phonon/main.cpp --- CMakeFiles/wannier.dir/all --- --- CMakeFiles/wannier.dir/wannier/WannierMinimizer.cpp.o --- [ 87%] Building CXX object CMakeFiles/wannier.dir/wannier/WannierMinimizer.cpp.o --- CMakeFiles/wannier.dir/wannier/Wannier.cpp.o --- [ 88%] Building CXX object CMakeFiles/wannier.dir/wannier/Wannier.cpp.o --- CMakeFiles/wannier.dir/wannier/WannierMinimizer.cpp.o --- /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++0x -o CMakeFiles/wannier.dir/wannier/WannierMinimizer.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/wannier/WannierMinimizer.cpp --- CMakeFiles/wannier.dir/wannier/Wannier.cpp.o --- /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++0x -o CMakeFiles/wannier.dir/wannier/Wannier.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/wannier/Wannier.cpp --- CMakeFiles/wannier.dir/wannier/WannierMinimizerRS.cpp.o --- [ 88%] Building CXX object CMakeFiles/wannier.dir/wannier/WannierMinimizerRS.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++0x -o CMakeFiles/wannier.dir/wannier/WannierMinimizerRS.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/wannier/WannierMinimizerRS.cpp --- CMakeFiles/phonon.dir/all --- --- CMakeFiles/phonon.dir/phonon/Phonon_init.cpp.o --- [ 89%] Building CXX object CMakeFiles/phonon.dir/phonon/Phonon_init.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++0x -o CMakeFiles/phonon.dir/phonon/Phonon_init.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/phonon/Phonon_init.cpp --- CMakeFiles/wannier.dir/all --- --- CMakeFiles/wannier.dir/wannier/WannierMinimizerFD.cpp.o --- [ 90%] Building CXX object CMakeFiles/wannier.dir/wannier/WannierMinimizerFD.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++0x -o CMakeFiles/wannier.dir/wannier/WannierMinimizerFD.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/wannier/WannierMinimizerFD.cpp --- CMakeFiles/phonon.dir/all --- --- CMakeFiles/phonon.dir/phonon/Phonon_supercell.cpp.o --- In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:25, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ScalarField.h:33, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Coulomb.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/Everything.h:26, from /construction/science/jdftx/jdftx-1.5.0/jdftx/phonon/Phonon.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/phonon/Phonon_supercell.cpp:20: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/BlasExtra.h: In instantiation of 'void eblas_zero(int, T*) [with T = complex]': /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:261:23: required from 'void ManagedMemory::zero() [with T = complex]' /construction/science/jdftx/jdftx-1.5.0/jdftx/phonon/Phonon_supercell.cpp:270:13: required from here /construction/science/jdftx/jdftx-1.5.0/jdftx/core/BlasExtra.h:253:59: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'struct complex'; use assignment or value-initialization instead [-Wclass-memaccess] template void eblas_zero(int N, T* x) { memset(x, 0, N*sizeof(T)); } ~~~~~~^~~~~~~~~~~~~~~~~~~ In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/vector3.h:28, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/matrix3.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/GridInfo.h:26, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/Everything.h:24, from /construction/science/jdftx/jdftx-1.5.0/jdftx/phonon/Phonon.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/phonon/Phonon_supercell.cpp:20: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/scalar.h:67:8: note: 'struct complex' declared here struct complex ^~~~~~~ --- CMakeFiles/wannier.dir/all --- --- CMakeFiles/wannier.dir/wannier/WannierMinimizerRS.cpp.o --- In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:25, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ScalarField.h:33, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Coulomb.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/Everything.h:26, from /construction/science/jdftx/jdftx-1.5.0/jdftx/wannier/WannierMinimizer.h:26, from /construction/science/jdftx/jdftx-1.5.0/jdftx/wannier/WannierMinimizerRS.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/wannier/WannierMinimizerRS.cpp:20: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/BlasExtra.h: In instantiation of 'void eblas_zero(int, T*) [with T = complex]': /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:261:23: required from 'void ManagedMemory::zero() [with T = complex]' /construction/science/jdftx/jdftx-1.5.0/jdftx/wannier/WannierMinimizerRS.cpp:80:14: required from here /construction/science/jdftx/jdftx-1.5.0/jdftx/core/BlasExtra.h:253:59: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'struct complex'; use assignment or value-initialization instead [-Wclass-memaccess] template void eblas_zero(int N, T* x) { memset(x, 0, N*sizeof(T)); } ~~~~~~^~~~~~~~~~~~~~~~~~~ In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/vector3.h:28, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/matrix3.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/MPIUtil.h:24, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Util.h:28, from /construction/science/jdftx/jdftx-1.5.0/jdftx/wannier/WannierMinimizer.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/wannier/WannierMinimizerRS.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/wannier/WannierMinimizerRS.cpp:20: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/scalar.h:67:8: note: 'struct complex' declared here struct complex ^~~~~~~ --- CMakeFiles/phonon.dir/all --- --- CMakeFiles/phonon.dir/phonon/Phonon_init.cpp.o --- In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:25, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ScalarField.h:33, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Coulomb.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/Everything.h:26, from /construction/science/jdftx/jdftx-1.5.0/jdftx/phonon/Phonon.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/phonon/Phonon_init.cpp:20: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/BlasExtra.h: In instantiation of 'void eblas_zero(int, T*) [with T = complex]': /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:261:23: required from 'void ManagedMemory::zero() [with T = complex]' /construction/science/jdftx/jdftx-1.5.0/jdftx/phonon/Phonon_init.cpp:328:16: required from here /construction/science/jdftx/jdftx-1.5.0/jdftx/core/BlasExtra.h:253:59: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'struct complex'; use assignment or value-initialization instead [-Wclass-memaccess] template void eblas_zero(int N, T* x) { memset(x, 0, N*sizeof(T)); } ~~~~~~^~~~~~~~~~~~~~~~~~~ In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/vector3.h:28, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/matrix3.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/GridInfo.h:26, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/Everything.h:24, from /construction/science/jdftx/jdftx-1.5.0/jdftx/phonon/Phonon.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/phonon/Phonon_init.cpp:20: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/scalar.h:67:8: note: 'struct complex' declared here struct complex ^~~~~~~ --- CMakeFiles/wannier.dir/all --- --- CMakeFiles/wannier.dir/wannier/WannierMinimizer.cpp.o --- In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:25, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ScalarField.h:33, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Coulomb.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/Everything.h:26, from /construction/science/jdftx/jdftx-1.5.0/jdftx/wannier/WannierMinimizer.h:26, from /construction/science/jdftx/jdftx-1.5.0/jdftx/wannier/WannierMinimizer.cpp:20: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/BlasExtra.h: In instantiation of 'void eblas_zero(int, T*) [with T = complex]': /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:261:23: required from 'void ManagedMemory::zero() [with T = complex]' /construction/science/jdftx/jdftx-1.5.0/jdftx/wannier/WannierMinimizer.cpp:212:11: required from here /construction/science/jdftx/jdftx-1.5.0/jdftx/core/BlasExtra.h:253:59: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'struct complex'; use assignment or value-initialization instead [-Wclass-memaccess] template void eblas_zero(int N, T* x) { memset(x, 0, N*sizeof(T)); } ~~~~~~^~~~~~~~~~~~~~~~~~~ In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/vector3.h:28, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/matrix3.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/MPIUtil.h:24, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Util.h:28, from /construction/science/jdftx/jdftx-1.5.0/jdftx/wannier/WannierMinimizer.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/wannier/WannierMinimizer.cpp:20: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/scalar.h:67:8: note: 'struct complex' declared here struct complex ^~~~~~~ --- CMakeFiles/wannier.dir/wannier/WannierMinimizer_init.cpp.o --- [ 91%] Building CXX object CMakeFiles/wannier.dir/wannier/WannierMinimizer_init.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++0x -o CMakeFiles/wannier.dir/wannier/WannierMinimizer_init.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/wannier/WannierMinimizer_init.cpp --- CMakeFiles/jdftx.dir/all --- --- jdftx --- [ 93%] Linking CXX executable jdftx /usr/local/bin/cmake -E cmake_link_script CMakeFiles/jdftx.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -Wl,-rpath -Wl,/usr/local/lib -L/usr/local/lib/gcc8 CMakeFiles/jdftx.dir/jdftx.cpp.o -o jdftx -Wl,-z,origin,-rpath,/construction/science/jdftx/.build:/usr/local/lib libjdftx.so /usr/local/lib/libmpicxx.so /usr/local/lib/libmpi.so /usr/local/lib/libgsl.so /usr/local/lib/libfftw3_threads.so /usr/local/lib/libfftw3.so /usr/local/lib/libcblas.so -llapack -lblas -pthread /usr/local/lib/libxc.so -lexecinfo /usr/local/bin/ld: /usr/lib/libc.so: .dynsym local symbol at index 8 (>= sh_info of 6) [ 94%] Built target jdftx --- CMakeFiles/wannier.dir/all --- --- CMakeFiles/wannier.dir/wannier/WannierMinimizer_phonon.cpp.o --- [ 95%] Building CXX object CMakeFiles/wannier.dir/wannier/WannierMinimizer_phonon.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++0x -o CMakeFiles/wannier.dir/wannier/WannierMinimizer_phonon.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/wannier/WannierMinimizer_phonon.cpp --- CMakeFiles/wannier.dir/wannier/WannierMinimizer_save.cpp.o --- [ 95%] Building CXX object CMakeFiles/wannier.dir/wannier/WannierMinimizer_save.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++0x -o CMakeFiles/wannier.dir/wannier/WannierMinimizer_save.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/wannier/WannierMinimizer_save.cpp --- CMakeFiles/wannier.dir/wannier/commands.cpp.o --- [ 96%] Building CXX object CMakeFiles/wannier.dir/wannier/commands.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++0x -o CMakeFiles/wannier.dir/wannier/commands.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/wannier/commands.cpp --- CMakeFiles/wannier.dir/wannier/main.cpp.o --- [ 96%] Building CXX object CMakeFiles/wannier.dir/wannier/main.cpp.o /usr/bin/c++ -DLIBXC_ENABLED -DMPI_ENABLED -I/construction/science/jdftx/.build -I/construction/science/jdftx/jdftx-1.5.0/jdftx -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++0x -o CMakeFiles/wannier.dir/wannier/main.cpp.o -c /construction/science/jdftx/jdftx-1.5.0/jdftx/wannier/main.cpp --- CMakeFiles/wannier.dir/wannier/WannierMinimizer_init.cpp.o --- In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:25, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ScalarField.h:33, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Coulomb.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/Everything.h:26, from /construction/science/jdftx/jdftx-1.5.0/jdftx/wannier/WannierMinimizer.h:26, from /construction/science/jdftx/jdftx-1.5.0/jdftx/wannier/WannierMinimizer_init.cpp:20: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/BlasExtra.h: In instantiation of 'void eblas_zero(int, T*) [with T = complex]': /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:261:23: required from 'void ManagedMemory::zero() [with T = complex]' /construction/science/jdftx/jdftx-1.5.0/jdftx/wannier/WannierMinimizer_init.cpp:250:14: required from here /construction/science/jdftx/jdftx-1.5.0/jdftx/core/BlasExtra.h:253:59: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'struct complex'; use assignment or value-initialization instead [-Wclass-memaccess] template void eblas_zero(int N, T* x) { memset(x, 0, N*sizeof(T)); } ~~~~~~^~~~~~~~~~~~~~~~~~~ In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/vector3.h:28, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/matrix3.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/MPIUtil.h:24, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Util.h:28, from /construction/science/jdftx/jdftx-1.5.0/jdftx/wannier/WannierMinimizer.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/wannier/WannierMinimizer_init.cpp:20: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/scalar.h:67:8: note: 'struct complex' declared here struct complex ^~~~~~~ --- CMakeFiles/wannier.dir/wannier/WannierMinimizer_save.cpp.o --- In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:25, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ScalarField.h:33, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Coulomb.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/electronic/Everything.h:26, from /construction/science/jdftx/jdftx-1.5.0/jdftx/wannier/WannierMinimizer.h:26, from /construction/science/jdftx/jdftx-1.5.0/jdftx/wannier/WannierMinimizer_save.cpp:20: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/BlasExtra.h: In instantiation of 'void eblas_zero(int, T*) [with T = complex]': /construction/science/jdftx/jdftx-1.5.0/jdftx/core/ManagedMemory.h:261:23: required from 'void ManagedMemory::zero() [with T = complex]' /construction/science/jdftx/jdftx-1.5.0/jdftx/wannier/WannierMinimizer_save.cpp:205:14: required from here /construction/science/jdftx/jdftx-1.5.0/jdftx/core/BlasExtra.h:253:59: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'struct complex'; use assignment or value-initialization instead [-Wclass-memaccess] template void eblas_zero(int N, T* x) { memset(x, 0, N*sizeof(T)); } ~~~~~~^~~~~~~~~~~~~~~~~~~ In file included from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/vector3.h:28, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/matrix3.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/MPIUtil.h:24, from /construction/science/jdftx/jdftx-1.5.0/jdftx/core/Util.h:28, from /construction/science/jdftx/jdftx-1.5.0/jdftx/wannier/WannierMinimizer.h:23, from /construction/science/jdftx/jdftx-1.5.0/jdftx/wannier/WannierMinimizer_save.cpp:20: /construction/science/jdftx/jdftx-1.5.0/jdftx/core/scalar.h:67:8: note: 'struct complex' declared here struct complex ^~~~~~~ --- CMakeFiles/phonon.dir/all --- --- phonon --- [ 96%] Linking CXX executable phonon /usr/local/bin/cmake -E cmake_link_script CMakeFiles/phonon.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -isystem /usr/local/include 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target phonon --- CMakeFiles/wannier.dir/all --- --- wannier --- [ 98%] Linking CXX executable wannier /usr/local/bin/cmake -E cmake_link_script CMakeFiles/wannier.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -O3 -Wno-unused-result -ftemplate-depth-512 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -Wl,-rpath -Wl,/usr/local/lib -L/usr/local/lib/gcc8 CMakeFiles/wannier.dir/wannier/Wannier.cpp.o CMakeFiles/wannier.dir/wannier/WannierMinimizer.cpp.o CMakeFiles/wannier.dir/wannier/WannierMinimizerFD.cpp.o CMakeFiles/wannier.dir/wannier/WannierMinimizerRS.cpp.o CMakeFiles/wannier.dir/wannier/WannierMinimizer_init.cpp.o CMakeFiles/wannier.dir/wannier/WannierMinimizer_phonon.cpp.o CMakeFiles/wannier.dir/wannier/WannierMinimizer_save.cpp.o 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------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for jdftx-1.5.0_1 ===> jdftx-1.5.0_1 depends on executable: bash - found ===> jdftx-1.5.0_1 depends on executable: gfortran8 - found ===> Generating temporary packing list /usr/local/bin/cmake -S/construction/science/jdftx/jdftx-1.5.0/jdftx -B/construction/science/jdftx/.build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/local/bin/cmake -E cmake_progress_start /construction/science/jdftx/.build/CMakeFiles /construction/science/jdftx/.build/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f CMakeFiles/jdftxlib.dir/build.make CMakeFiles/jdftxlib.dir/depend cd /construction/science/jdftx/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/jdftx/jdftx-1.5.0/jdftx /construction/science/jdftx/jdftx-1.5.0/jdftx 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/construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/c_lda_v1.2.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/ru_lda_v1.2.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/na_pbe_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/y_lda_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/ge_pbe_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/mg_pbe_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/co_pbe_v1.2.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/ir_lda_v1.2.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/sb_pbe_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/h_pbe_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/si_pbe_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/te_pbe_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/b_lda_v1.01.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/al_lda_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/as_lda_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/ni_lda_v1.2.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/nb_lda_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/na_lda_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/ti_pbe_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/o_lda_v1.2.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/si_lda_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/b_lda_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/mo_lda_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/tl_pbe_v1.2.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/ta_pbe_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/cs_pbe_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/pt_pbe_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/cs_lda_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/o_pbe_v1.2.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/te_lda_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/co_lda_v1.2.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/nb_pbe_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/be_pbe_v1.2.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/in_pbe_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/ca_pbe_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/cl_pbe_v1.2.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/se_lda_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/ti_lda_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/ga_pbe_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/la_pbe_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/i_pbe_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/ag_pbe_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/cr_pbe_v1.2.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/v_lda_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/s_pbe_v1.2.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/ni_pbe_v1.2.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/re_lda_v1.2.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/ta_lda_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/br_lda_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/au_pbe_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/hf_lda_plus4_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/y_pbe_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/pb_pbe_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/sr_lda_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/README -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/sn_pbe_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/cu_lda_v1.2.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/sc_pbe_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/li_pbe_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/h_pbe_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/la_pbesol_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/f_pbesol_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/fe_lda_v1.5.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/s_lda_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/h_lda_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/mn_pbe_v1.5.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/ni_pbe_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/in_lda_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/re_pbesol_v1.2.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/s_pbe_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/zr_pbesol_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/li_pbe.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/k_pbe.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/p_pbesol_v1.5.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/hg_pbe.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/cr_pbe_v1.5.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/ge_pbe_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/i_pbe.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/ti_pbe_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/bi_pbesol_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/c_pbesol_v1.2.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/rh_lda_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/hf_pbesol_plus4_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/pd_pbesol_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/sn_pbe_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/mo_pbesol_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/li_pbe_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/rb_pbesol_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/nb_pbesol_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/al_pbesol_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/i_lda.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/v_lda_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/hg_pbesol_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/in_pbe_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/fe_pbe_v1.5.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/au_pbesol_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/b_lda_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/as_pbesol_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/ga_pbesol_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/ta_pbesol_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/ge_pbesol_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/ca_pbesol_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/sb_pbesol_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/hg_pbesol.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/y_lda_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/pt_pbe_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/mg_pbesol_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/rh_pbe_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/fe_pbe.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/b_pbesol_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/li_lda_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/be_pbesol_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/se_pbesol_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/na_lda_v1.5.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/cd_pbesol_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/n_pbesol_v1.2.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/k_pbesol_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/v_pbe_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/pd_pbe_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/ag_pbe.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/p_lda_v1.5.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/sr_pbesol_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/ga_pbe_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/si_pbesol_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/k_pbesol.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/ag_lda_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/la_pbe.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/la_lda.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/li_lda.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/la_pbesol.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/k_lda_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/ge_lda.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/mo_pbe.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/pd_pbe.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/as_lda.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/cd_lda.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/se_pbe.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/ge_pbesol.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/hf_lda_plus4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/na_lda.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/au_pbesol.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/rb_lda.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/sn_lda.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/cl_pbesol.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/mo_lda.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/pd_lda.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/al_pbesol.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/ca_pbesol.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/se_lda.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/ge_pbe.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/i_pbesol.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/ni_lda.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/ba_pbesol.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/rh_lda.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/ta_lda.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/cr_pbesol.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/n_pbe.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/pt_pbe.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/au_lda.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/cl_lda.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/si_pbe.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/h_pbesol.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/hf_pbe_plus4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/na_pbesol.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/b_pbe.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/rb_pbesol.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/sn_pbesol.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/co_pbe.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/mn_pbesol.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/pb_pbesol.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/al_pbe.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/ca_pbe.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/sc_pbesol.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/ga_pbesol.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/ir_pbe.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/o_pbesol.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/bi_pbe.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/ru_pbesol.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/tc_pbesol.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/cu_pbe.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/hf_pbe.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/na_pbe.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/b_lda.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/rb_pbe.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/sn_pbe.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/co_lda.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/n_lda.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/pt_lda.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/as_pbesol.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/cd_pbesol.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/si_lda.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/h_pbe.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/hg_lda.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/nb_pbesol.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/ba_pbe.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/re_pbesol.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/sr_pbesol.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/cr_pbe.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/mn_pbe.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/pb_pbe.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/al_lda.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/ca_lda.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/sc_pbe.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/ga_pbe.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/in_pbe.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/ni_pbesol.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/be_pbe.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/rh_pbesol.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/ta_pbesol.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/cs_pbe.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/hf_lda.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/n_pbesol.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/au_pbe.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/pt_pbesol.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/si_pbesol.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/cl_pbe.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/hf_pbesol_plus4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/nb_pbe.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/ba_lda.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/re_pbe.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/sr_pbe.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/cr_lda.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/k_lda.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/os_pbe.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/br_lda.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/s_pbe.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/te_pbe.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/f_lda.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/in_lda.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/ni_pbe.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/be_lda.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/rh_pbe.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/ta_pbe.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/cs_lda.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/li_pbesol.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/os_pbesol.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/br_pbe.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/s_pbesol.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/te_pbesol.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/f_pbe.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/hf_pbesol.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/nb_lda.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/b_pbesol.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/re_lda.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/sr_lda.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/co_pbesol.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/mn_lda.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/pb_lda.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/ag_pbesol.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/c_pbesol.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/sc_lda.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/ga_lda.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/mg_pbesol.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/p_pbesol.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/c_pbe.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/sb_pbesol.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/fe_pbesol.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/ir_lda.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/o_pbe.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/bi_lda.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/ru_pbe.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/tc_pbe.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/cu_lda.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/mg_lda.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/p_lda.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/br_pbesol.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/sb_lda.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/f_pbesol.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/mo_pbesol.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/pd_pbesol.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/as_pbe.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/cd_pbe.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/se_pbesol.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/h_lda.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/ir_pbesol.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/os_lda.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/bi_pbesol.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/s_lda.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/te_lda.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/cu_pbesol.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/in_pbesol.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/o_lda.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/be_pbesol.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/ru_lda.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/tc_lda.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/cs_pbesol.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/mg_pbe.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/p_pbe.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/c_lda.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/sb_pbe.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/fe_lda.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/tl_pbesol_v1.2.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/sc_pbesol_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/co_pbesol_v1.2.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/be_pbe_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/b_pbe_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/mg_lda_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/ag_pbe_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/y_pbe_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/in_pbesol_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/hf_pbesol_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/k_pbe_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/na_pbesol_v1.5.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/f_lda_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/f_pbe_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/y_pbesol_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/cr_lda_v1.5.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/mn_pbesol_v1.5.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/sn_lda_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/br_pbe_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/na_pbe_v1.5.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/ni_pbesol_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/pt_pbesol_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/pd_lda_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/tc_pbesol_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/w_pbesol_v1.2.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/sb_pbe_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/p_pbe_v1.5.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/fe_pbesol_v1.5.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/ru_pbesol_v1.2.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/o_pbesol_v1.2.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/ti_lda_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/zn_pbesol_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/ni_lda_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/ga_lda_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/rh_pbesol_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/ba_pbesol_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/li_pbesol_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/mn_lda_v1.5.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/os_pbesol_v1.2.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/cl_pbe_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/sn_pbesol_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/cl_lda_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/sb_lda_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/br_pbesol_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/mg_pbe_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/ge_lda_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/cl_pbesol_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/ag_pbesol_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/cr_pbesol_v1.5.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/ti_pbesol_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/ir_pbesol_v1.2.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/pb_pbesol_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/cs_pbesol_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/v_pbesol_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/br_lda_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/i_pbesol_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/pt_lda_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/te_pbesol_v1.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/h_pbesol_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/cu_pbesol_v1.2.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/be_lda_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/GBRV/s_pbesol_v1.4.uspp -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15 -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/Sc_ONCV_PBE-1.0.pulay -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/Sb_ONCV_PBE-1.1.pulay -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/Sb_ONCV_PBE-1.0.pulay -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/Ru_ONCV_PBE-1.0.pulay -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/Rh_ONCV_PBE-1.0.pulay -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/Re_ONCV_PBE-1.0.pulay -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/Rb_ONCV_PBE-1.0.pulay -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/Pt_ONCV_PBE-1.0.pulay -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/P_ONCV_PBE-1.1.pulay -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/P_ONCV_PBE-1.0.pulay -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/Pd_ONCV_PBE-1.0.pulay -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/Pb_ONCV_PBE-1.0.pulay -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/Os_ONCV_PBE-1.0.pulay -- Installing: 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/construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/Cd_ONCV_PBE-1.0.pulay -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/Ca_ONCV_PBE-1.0.pulay -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/Br_ONCV_PBE-1.0.pulay -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/B_ONCV_PBE-1.0.pulay -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/Bi_ONCV_PBE-1.0.pulay -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/Be_ONCV_PBE-1.0.pulay -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/Ba_ONCV_PBE-1.0.pulay -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/Au_ONCV_PBE-1.0.pulay -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/As_ONCV_PBE-1.1.pulay -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/As_ONCV_PBE-1.0.pulay -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/Ar_ONCV_PBE-1.1.pulay -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/Ar_ONCV_PBE-1.0.pulay -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/Al_ONCV_PBE-1.0.pulay -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/Ag_ONCV_PBE-1.0.pulay -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/S_ONCV_PBE-1.0.upf -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/Se_ONCV_PBE-1.0.upf -- Installing: 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-- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/Ir_ONCV_PBE-1.0.upf -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/Kr_ONCV_PBE-1.0.upf -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/Sr_ONCV_PBE-1.0.upf -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/Ag_ONCV_PBE-1.0.upf -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/Hf_ONCV_PBE-1.0.upf -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/Cu_ONCV_PBE-1.0.upf -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/Ba_ONCV_PBE-1.0.upf -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/Ge_ONCV_PBE-1.0.upf -- Installing: 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-- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/Cd_ONCV_PBE-1.0.upf -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/Al_ONCV_PBE-1.0.upf -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/W_ONCV_PBE-1.0.upf -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/Ga_ONCV_PBE-1.0.upf -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/I_ONCV_PBE-1.1.upf -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/Ar_ONCV_PBE-1.1.upf -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/Fe_ONCV_PBE-1.0.upf -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/Pb_ONCV_PBE-1.0.upf -- Installing: 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-- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/Si_ONCV_PBE-1.1.upf -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/Mg_ONCV_PBE-1.0.upf -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/Cr_ONCV_PBE-1.0.upf -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/Mo_ONCV_PBE-1.0.upf -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/Ni_ONCV_PBE-1.0.upf -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/Cl_ONCV_PBE-1.0.upf -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/K_ONCV_PBE-1.0.upf -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/Sn_ONCV_PBE-1.1.upf -- Installing: 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-- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/README -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/Hg_ONCV_PBE-1.0.upf -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/Sb_ONCV_PBE-1.1.upf -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/Cs_ONCV_PBE-1.1.upf -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/He_ONCV_PBE-1.0.upf -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/Na_ONCV_PBE-1.0.upf -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/Ca_ONCV_PBE-1.0.upf -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/Sn_ONCV_PBE-1.0.upf -- Installing: 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-- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/Mn_ONCV_PBE-1.0.upf -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/Se_ONCV_PBE-1.1.upf -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/N_ONCV_PBE-1.0.upf -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/Te_ONCV_PBE-1.1.upf -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/Y_ONCV_PBE-1.0.upf -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/Ta_ONCV_PBE.upf -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/Sr_ONCV_PBE.pulay -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/pseudopotentials/SG15/Sr_ONCV_PBE.upf -- Installing: 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/construction/science/jdftx/stage/usr/local/share/jdftx/scripts/xyzToIonposOpt -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/scripts/calcPulay -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/scripts/createVASP -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/scripts/printStackTrace -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/scripts/createXSF -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/scripts/binaryToText -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/scripts/plotConvergence -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/scripts/bandstructKpoints -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/scripts/xyzToIonpos -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/scripts/ase -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/scripts/ase/JDFTx.py -- Installing: /construction/science/jdftx/stage/usr/local/share/jdftx/scripts/ase/README.txt ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:11 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for jdftx-1.5.0_1 file sizes/checksums [901]: 0% file sizes/checksums [901]: 11% file sizes/checksums [901]: 22% file sizes/checksums [901]: 33% file sizes/checksums [901]: 44% file sizes/checksums [901]: 55% file sizes/checksums [901]: 66% file sizes/checksums [901]: 77% file sizes/checksums [901]: 88% file sizes/checksums [901]: 99% file sizes/checksums [901]: 100% packing files [901]: 0% packing files [901]: 11% packing files [901]: 22% packing files [901]: 33% packing files [901]: 44% packing files [901]: 55% packing files [901]: 66% packing files [901]: 77% packing files [901]: 88% packing files [901]: 99% packing files [901]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:02:57 TOTAL TIME 00:09:37