------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/expat-2.2.6_1.tgz Installing /packages/All/indexinfo-0.3.1.tgz Installing /packages/All/libffi-3.2.1_3.tgz Installing /packages/All/ncurses-6.1.20190525.tgz Installing /packages/All/readline-8.0.0.tgz Installing /packages/All/gettext-runtime-0.20.1.tgz Installing /packages/All/openssl-1.0.2s,1.tgz Message from openssl-1.0.2s,1: Edit /usr/local/openssl/openssl.cnf to fit your needs. Installing /packages/All/python36-3.6.9.tgz Message from python36-3.6.9: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py36-gdbm databases/py-gdbm@py36 py36-sqlite3 databases/py-sqlite3@py36 py36-tkinter x11-toolkits/py-tkinter@py36 =========================================================================== Installing /packages/All/py36-setuptools-41.0.1.tgz Installing /packages/All/metis-5.1.0_8.tgz Message from metis-5.1.0_8: ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Installing /packages/All/gmp-6.1.2_1.tgz Installing /packages/All/mpfr-4.0.2.tgz Installing /packages/All/mpc-1.1.0_2.tgz Installing /packages/All/binutils-2.32_1,1.tgz Installing /packages/All/gcc8-8.3.0_3.tgz Message from gcc8-8.3.0_3: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/blas-3.5.0_6.tgz Installing /packages/All/lapack-3.5.0_8.tgz Installing /packages/All/openblas-0.2.20_10,1.tgz Installing /packages/All/suitesparse-5.2.0_4.tgz Installing /packages/All/py36-numpy-1.16.4_1,1.tgz Installing /packages/All/py36-joblib-0.13.0.tgz Installing /packages/All/py36-scipy-1.2.2_1.tgz SUCCEEDED 00:00:18 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- x===> Fetching all distfiles required by py36-scikit-fusion-0.2.1_2 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- x===> Fetching all distfiles required by py36-scikit-fusion-0.2.1_2 for building => SHA256 Checksum OK for scikit-fusion-0.2.1.tar.gz. SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- x===> Fetching all distfiles required by py36-scikit-fusion-0.2.1_2 for building ===> Extracting for py36-scikit-fusion-0.2.1_2 => SHA256 Checksum OK for scikit-fusion-0.2.1.tar.gz. Extracted Memory Use: 6.72M SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- x===> Patching for py36-scikit-fusion-0.2.1_2 SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- x===> Configuring for py36-scikit-fusion-0.2.1_2 running config SUCCEEDED 00:00:02 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- x===> Building for py36-scikit-fusion-0.2.1_2 running build running build_py creating build creating build/lib creating build/lib/skfusion copying skfusion/__init__.py -> build/lib/skfusion copying skfusion/version.py -> build/lib/skfusion creating build/lib/skfusion/datasets copying skfusion/datasets/__init__.py -> build/lib/skfusion/datasets copying skfusion/datasets/base.py -> build/lib/skfusion/datasets creating build/lib/skfusion/fusion copying skfusion/fusion/__init__.py -> build/lib/skfusion/fusion creating build/lib/skfusion/tests copying skfusion/tests/__init__.py -> build/lib/skfusion/tests copying skfusion/tests/test_base.py -> build/lib/skfusion/tests copying skfusion/tests/test_dfmc.py -> build/lib/skfusion/tests copying skfusion/tests/test_dfmf.py -> build/lib/skfusion/tests copying skfusion/tests/test_fusion_graph.py -> build/lib/skfusion/tests copying skfusion/tests/test_multiple_relations.py -> build/lib/skfusion/tests copying skfusion/tests/test_n_run.py -> build/lib/skfusion/tests creating build/lib/skfusion/fusion/base copying skfusion/fusion/base/__init__.py -> build/lib/skfusion/fusion/base copying skfusion/fusion/base/base.py -> build/lib/skfusion/fusion/base copying skfusion/fusion/base/fusion_graph.py -> build/lib/skfusion/fusion/base creating build/lib/skfusion/fusion/decomposition copying skfusion/fusion/decomposition/__init__.py -> build/lib/skfusion/fusion/decomposition copying skfusion/fusion/decomposition/_dfmc.py -> build/lib/skfusion/fusion/decomposition copying skfusion/fusion/decomposition/_dfmf.py -> build/lib/skfusion/fusion/decomposition copying skfusion/fusion/decomposition/_init.py -> build/lib/skfusion/fusion/decomposition copying skfusion/fusion/decomposition/dfmc.py -> build/lib/skfusion/fusion/decomposition copying skfusion/fusion/decomposition/dfmf.py -> build/lib/skfusion/fusion/decomposition creating build/lib/skfusion/datasets/data creating build/lib/skfusion/datasets/data/dicty copying skfusion/datasets/data/dicty/dicty.gene_annnotations.csv.gz -> build/lib/skfusion/datasets/data/dicty copying skfusion/datasets/data/dicty/dicty.gene_expression.csv.gz -> build/lib/skfusion/datasets/data/dicty copying skfusion/datasets/data/dicty/dicty.ppi.csv.gz -> build/lib/skfusion/datasets/data/dicty creating build/lib/skfusion/datasets/data/movielens copying skfusion/datasets/data/movielens/actors.csv.gz -> build/lib/skfusion/datasets/data/movielens copying skfusion/datasets/data/movielens/movies.csv.gz -> build/lib/skfusion/datasets/data/movielens copying skfusion/datasets/data/movielens/ratings.csv.gz -> build/lib/skfusion/datasets/data/movielens creating build/lib/skfusion/datasets/data/pharma copying skfusion/datasets/data/pharma/pharma.actions.csv.gz -> build/lib/skfusion/datasets/data/pharma copying skfusion/datasets/data/pharma/pharma.depo_cats.csv.gz -> build/lib/skfusion/datasets/data/pharma copying skfusion/datasets/data/pharma/pharma.depositors.csv.gz -> build/lib/skfusion/datasets/data/pharma copying skfusion/datasets/data/pharma/pharma.fingerprints.csv.gz -> build/lib/skfusion/datasets/data/pharma copying skfusion/datasets/data/pharma/pharma.pubmed.csv.gz -> build/lib/skfusion/datasets/data/pharma copying skfusion/datasets/data/pharma/pharma.tanimoto.csv.gz -> build/lib/skfusion/datasets/data/pharma SUCCEEDED 00:00:02 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- x===> Staging for py36-scikit-fusion-0.2.1_2 ===> Generating temporary packing list running install running build running build_py copying skfusion/version.py -> build/lib/skfusion running install_lib creating /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6 creating /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages creating /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion copying build/lib/skfusion/__init__.py -> /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion copying build/lib/skfusion/version.py -> /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion creating /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/datasets copying build/lib/skfusion/datasets/__init__.py -> /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/datasets copying build/lib/skfusion/datasets/base.py -> /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/datasets creating /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/datasets/data creating /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/datasets/data/dicty copying build/lib/skfusion/datasets/data/dicty/dicty.gene_annnotations.csv.gz -> /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/datasets/data/dicty copying build/lib/skfusion/datasets/data/dicty/dicty.gene_expression.csv.gz -> /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/datasets/data/dicty copying build/lib/skfusion/datasets/data/dicty/dicty.ppi.csv.gz -> /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/datasets/data/dicty creating /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/datasets/data/movielens copying build/lib/skfusion/datasets/data/movielens/actors.csv.gz -> /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/datasets/data/movielens copying build/lib/skfusion/datasets/data/movielens/movies.csv.gz -> /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/datasets/data/movielens copying build/lib/skfusion/datasets/data/movielens/ratings.csv.gz -> /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/datasets/data/movielens creating /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/datasets/data/pharma copying build/lib/skfusion/datasets/data/pharma/pharma.actions.csv.gz -> /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/datasets/data/pharma copying build/lib/skfusion/datasets/data/pharma/pharma.depo_cats.csv.gz -> /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/datasets/data/pharma copying build/lib/skfusion/datasets/data/pharma/pharma.depositors.csv.gz -> /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/datasets/data/pharma copying build/lib/skfusion/datasets/data/pharma/pharma.fingerprints.csv.gz -> /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/datasets/data/pharma copying build/lib/skfusion/datasets/data/pharma/pharma.pubmed.csv.gz -> /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/datasets/data/pharma copying build/lib/skfusion/datasets/data/pharma/pharma.tanimoto.csv.gz -> /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/datasets/data/pharma creating /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/fusion copying build/lib/skfusion/fusion/__init__.py -> /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/fusion creating /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/fusion/base copying build/lib/skfusion/fusion/base/__init__.py -> /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/fusion/base copying build/lib/skfusion/fusion/base/base.py -> /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/fusion/base copying build/lib/skfusion/fusion/base/fusion_graph.py -> /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/fusion/base creating /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/fusion/decomposition copying build/lib/skfusion/fusion/decomposition/__init__.py -> /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/fusion/decomposition copying build/lib/skfusion/fusion/decomposition/_dfmc.py -> /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/fusion/decomposition copying build/lib/skfusion/fusion/decomposition/_dfmf.py -> /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/fusion/decomposition copying build/lib/skfusion/fusion/decomposition/_init.py -> /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/fusion/decomposition copying build/lib/skfusion/fusion/decomposition/dfmc.py -> /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/fusion/decomposition copying build/lib/skfusion/fusion/decomposition/dfmf.py -> /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/fusion/decomposition creating /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/tests copying build/lib/skfusion/tests/__init__.py -> /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/tests copying build/lib/skfusion/tests/test_base.py -> /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/tests copying build/lib/skfusion/tests/test_dfmc.py -> /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/tests copying build/lib/skfusion/tests/test_dfmf.py -> /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/tests copying build/lib/skfusion/tests/test_fusion_graph.py -> /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/tests copying build/lib/skfusion/tests/test_multiple_relations.py -> /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/tests copying build/lib/skfusion/tests/test_n_run.py -> /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/tests byte-compiling /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/version.py to version.cpython-36.pyc byte-compiling /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/datasets/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/datasets/base.py to base.cpython-36.pyc byte-compiling /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/fusion/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/fusion/base/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/fusion/base/base.py to base.cpython-36.pyc byte-compiling /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/fusion/base/fusion_graph.py to fusion_graph.cpython-36.pyc byte-compiling /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/fusion/decomposition/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/fusion/decomposition/_dfmc.py to _dfmc.cpython-36.pyc byte-compiling /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/fusion/decomposition/_dfmf.py to _dfmf.cpython-36.pyc byte-compiling /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/fusion/decomposition/_init.py to _init.cpython-36.pyc byte-compiling /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/fusion/decomposition/dfmc.py to dfmc.cpython-36.pyc byte-compiling /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/fusion/decomposition/dfmf.py to dfmf.cpython-36.pyc byte-compiling /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/tests/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/tests/test_base.py to test_base.cpython-36.pyc byte-compiling /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/tests/test_dfmc.py to test_dfmc.cpython-36.pyc byte-compiling /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/tests/test_dfmf.py to test_dfmf.cpython-36.pyc byte-compiling /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/tests/test_fusion_graph.py to test_fusion_graph.cpython-36.pyc byte-compiling /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/tests/test_multiple_relations.py to test_multiple_relations.cpython-36.pyc byte-compiling /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/skfusion/tests/test_n_run.py to test_n_run.cpython-36.pyc writing byte-compilation script '/tmp/tmp5e3jmqmm.py' /usr/local/bin/python3.6 /tmp/tmp5e3jmqmm.py removing /tmp/tmp5e3jmqmm.py running install_egg_info running egg_info writing scikit_fusion.egg-info/PKG-INFO writing dependency_links to scikit_fusion.egg-info/dependency_links.txt writing requirements to scikit_fusion.egg-info/requires.txt writing top-level names to scikit_fusion.egg-info/top_level.txt reading manifest file 'scikit_fusion.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.csv' under directory 'skfusion/datasets' warning: no files found matching '*.rst' under directory 'skfusion/datasets' warning: no files found matching '*.jpg' under directory 'skfusion/datasets' warning: no files found matching '*.txt' under directory 'skfusion/datasets' warning: no files found matching '*.txt' under directory 'skfusion/tests' warning: no files found matching '*.csv' under directory 'skfusion/tests' warning: no files found matching '*csv.gz' under directory 'skfusion/tests' writing manifest file 'scikit_fusion.egg-info/SOURCES.txt' Copying scikit_fusion.egg-info to /construction/misc/py-scikit-fusion/stage/usr/local/lib/python3.6/site-packages/scikit_fusion-0.2.1-py3.6.egg-info running install_scripts writing list of installed files to '/construction/misc/py-scikit-fusion/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:02 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- x====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- x===> Building package for py36-scikit-fusion-0.2.1_2 file sizes/checksums [80]: 0% file sizes/checksums [80]: 100% packing files [80]: 0% packing files [80]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:01 TOTAL TIME 00:00:29