------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/metis-5.1.0_8.tgz Message from metis-5.1.0_8: ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Installing /packages/All/indexinfo-0.3.1.tgz Installing /packages/All/gmp-6.1.2_1.tgz Installing /packages/All/mpfr-4.0.2.tgz Installing /packages/All/mpc-1.1.0_2.tgz Installing /packages/All/gettext-runtime-0.20.1.tgz Installing /packages/All/binutils-2.32_1,1.tgz Installing /packages/All/gcc8-8.3.0_3.tgz Message from gcc8-8.3.0_3: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/blas-3.5.0_6.tgz Installing /packages/All/lapack-3.5.0_8.tgz Installing /packages/All/openblas-0.2.20_10,1.tgz Installing /packages/All/suitesparse-5.2.0_4.tgz Installing /packages/All/expat-2.2.6_1.tgz Installing /packages/All/libffi-3.2.1_3.tgz Installing /packages/All/ncurses-6.1.20190525.tgz Installing /packages/All/readline-8.0.0.tgz Installing /packages/All/openssl-1.0.2s,1.tgz Message from openssl-1.0.2s,1: Edit /usr/local/openssl/openssl.cnf to fit your needs. Installing /packages/All/python36-3.6.9.tgz Message from python36-3.6.9: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py36-gdbm databases/py-gdbm@py36 py36-sqlite3 databases/py-sqlite3@py36 py36-tkinter x11-toolkits/py-tkinter@py36 =========================================================================== Installing /packages/All/py36-setuptools-41.0.1.tgz Installing /packages/All/py36-numpy-1.16.4_1,1.tgz Installing /packages/All/py36-scipy-1.2.2_1.tgz Installing /packages/All/pcre-8.43_2.tgz Installing /packages/All/libedit-3.1.20190324,1.tgz Installing /packages/All/lua52-5.2.4.tgz Installing /packages/All/swig30-3.0.12.tgz Installing /packages/All/py36-cython-0.29_1.tgz Installing /packages/All/cblas-1.0_12.tgz Message from cblas-1.0_12: ===> NOTICE: The cblas port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port SUCCEEDED 00:00:23 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- x===> Fetching all distfiles required by py36-scikit-umfpack-0.3.2_2 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- x===> Fetching all distfiles required by py36-scikit-umfpack-0.3.2_2 for building => SHA256 Checksum OK for scikit-umfpack-0.3.2.tar.gz. SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- x===> Fetching all distfiles required by py36-scikit-umfpack-0.3.2_2 for building ===> Extracting for py36-scikit-umfpack-0.3.2_2 => SHA256 Checksum OK for scikit-umfpack-0.3.2.tar.gz. Extracted Memory Use: 0.14M SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- x===> Patching for py36-scikit-umfpack-0.3.2_2 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- x===> Configuring for py36-scikit-umfpack-0.3.2_2 umfpack_info: customize UnixCCompiler C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpclnmgmky/tmp creating /tmp/tmpclnmgmky/tmp/tmpclnmgmky compile options: '-MMD -MF /tmp/tmpclnmgmky/file.c.d -c' cc: /tmp/tmpclnmgmky/file.c amd_info: customize UnixCCompiler C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmp_654ytg2/tmp creating /tmp/tmp_654ytg2/tmp/tmp_654ytg2 compile options: '-MMD -MF /tmp/tmp_654ytg2/file.c.d -c' cc: /tmp/tmp_654ytg2/file.c customize UnixCCompiler C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpul3juobx/tmp creating /tmp/tmpul3juobx/tmp/tmpul3juobx compile options: '-MMD -MF /tmp/tmpul3juobx/file.c.d -c' cc: /tmp/tmpul3juobx/file.c FOUND: libraries = ['amd', 'amd'] library_dirs = ['/usr/local/lib'] include_dirs = ['/usr/local/include/suitesparse'] define_macros = [('SCIPY_AMD_H', None)] swig_opts = ['-I/usr/local/include/suitesparse'] customize UnixCCompiler C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmp39wmgyny/tmp creating /tmp/tmp39wmgyny/tmp/tmp39wmgyny compile options: '-MMD -MF /tmp/tmp39wmgyny/file.c.d -c' cc: /tmp/tmp39wmgyny/file.c FOUND: libraries = ['umfpack', 'amd', 'amd', 'umfpack'] library_dirs = ['/usr/local/lib'] include_dirs = ['/usr/local/include/suitesparse'] define_macros = [('SCIPY_UMFPACK_H', None), ('SCIPY_AMD_H', None)] swig_opts = ['-I/usr/local/include/suitesparse', '-I/usr/local/include/suitesparse'] blas_opt_info: blas_mkl_info: customize UnixCCompiler C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpdhq4mzmy/tmp creating /tmp/tmpdhq4mzmy/tmp/tmpdhq4mzmy compile options: '-MMD -MF /tmp/tmpdhq4mzmy/file.c.d -c' cc: /tmp/tmpdhq4mzmy/file.c libraries mkl_rt not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE blis_info: customize UnixCCompiler C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpepnfjlag/tmp creating /tmp/tmpepnfjlag/tmp/tmpepnfjlag compile options: '-MMD -MF /tmp/tmpepnfjlag/file.c.d -c' cc: /tmp/tmpepnfjlag/file.c libraries blis not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE atlas_3_10_blas_threads_info: Setting PTATLAS=ATLAS customize UnixCCompiler C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpkigmsmbw/tmp creating /tmp/tmpkigmsmbw/tmp/tmpkigmsmbw compile options: '-MMD -MF /tmp/tmpkigmsmbw/file.c.d -c' cc: /tmp/tmpkigmsmbw/file.c libraries tatlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE atlas_3_10_blas_info: customize UnixCCompiler C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmp_nhdylem/tmp creating /tmp/tmp_nhdylem/tmp/tmp_nhdylem compile options: '-MMD -MF /tmp/tmp_nhdylem/file.c.d -c' cc: /tmp/tmp_nhdylem/file.c libraries satlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE atlas_blas_threads_info: Setting PTATLAS=ATLAS customize UnixCCompiler C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmp82b1b0zw/tmp creating /tmp/tmp82b1b0zw/tmp/tmp82b1b0zw compile options: '-MMD -MF /tmp/tmp82b1b0zw/file.c.d -c' cc: /tmp/tmp82b1b0zw/file.c libraries ptf77blas,ptcblas,atlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE atlas_blas_info: customize UnixCCompiler C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpgun466rf/tmp creating /tmp/tmpgun466rf/tmp/tmpgun466rf compile options: '-MMD -MF /tmp/tmpgun466rf/file.c.d -c' cc: /tmp/tmpgun466rf/file.c libraries f77blas,cblas,atlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE accelerate_info: NOT AVAILABLE /usr/local/lib/python3.6/site-packages/numpy/distutils/system_info.py:641: UserWarning: Atlas (http://math-atlas.sourceforge.net/) libraries not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [atlas]) or by setting the ATLAS environment variable. self.calc_info() blas_info: customize UnixCCompiler C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpli7_q07c/tmp creating /tmp/tmpli7_q07c/tmp/tmpli7_q07c compile options: '-MMD -MF /tmp/tmpli7_q07c/file.c.d -c' cc: /tmp/tmpli7_q07c/file.c customize UnixCCompiler C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpha2d32l4/tmp creating /tmp/tmpha2d32l4/tmp/tmpha2d32l4 compile options: '-MMD -MF /tmp/tmpha2d32l4/file.c.d -c' cc: /tmp/tmpha2d32l4/file.c C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpn1lziqk8/tmp creating /tmp/tmpn1lziqk8/tmp/tmpn1lziqk8 compile options: '-I/usr/include -I/usr/local/include -I/usr/local/include/suitesparse -c' cc: /tmp/tmpn1lziqk8/source.c cc /tmp/tmpn1lziqk8/tmp/tmpn1lziqk8/source.o -L/usr/local/lib -lcblas -o /tmp/tmpn1lziqk8/a.out customize UnixCCompiler C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpil1j36oo/tmp creating /tmp/tmpil1j36oo/tmp/tmpil1j36oo compile options: '-MMD -MF /tmp/tmpil1j36oo/file.c.d -c' cc: /tmp/tmpil1j36oo/file.c FOUND: libraries = ['cblas', 'blas'] library_dirs = ['/usr/local/lib'] include_dirs = ['/usr/include', '/usr/local/include', '/usr/local/include/suitesparse'] language = c define_macros = [('HAVE_CBLAS', None)] FOUND: define_macros = [('NO_ATLAS_INFO', 1), ('HAVE_CBLAS', None)] libraries = ['cblas', 'blas'] library_dirs = ['/usr/local/lib'] include_dirs = ['/usr/include', '/usr/local/include', '/usr/local/include/suitesparse'] language = c running config SUCCEEDED 00:00:35 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- x===> Building for py36-scikit-umfpack-0.3.2_2 umfpack_info: customize UnixCCompiler C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmprrfb96ph/tmp creating /tmp/tmprrfb96ph/tmp/tmprrfb96ph compile options: '-MMD -MF /tmp/tmprrfb96ph/file.c.d -c' cc: /tmp/tmprrfb96ph/file.c amd_info: customize UnixCCompiler C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmp8trhrhdt/tmp creating /tmp/tmp8trhrhdt/tmp/tmp8trhrhdt compile options: '-MMD -MF /tmp/tmp8trhrhdt/file.c.d -c' cc: /tmp/tmp8trhrhdt/file.c customize UnixCCompiler C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpb89_xzgf/tmp creating /tmp/tmpb89_xzgf/tmp/tmpb89_xzgf compile options: '-MMD -MF /tmp/tmpb89_xzgf/file.c.d -c' cc: /tmp/tmpb89_xzgf/file.c FOUND: libraries = ['amd', 'amd'] library_dirs = ['/usr/local/lib'] include_dirs = ['/usr/local/include/suitesparse'] define_macros = [('SCIPY_AMD_H', None)] swig_opts = ['-I/usr/local/include/suitesparse'] customize UnixCCompiler C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpo5rnsoak/tmp creating /tmp/tmpo5rnsoak/tmp/tmpo5rnsoak compile options: '-MMD -MF /tmp/tmpo5rnsoak/file.c.d -c' cc: /tmp/tmpo5rnsoak/file.c FOUND: libraries = ['umfpack', 'amd', 'amd', 'umfpack'] library_dirs = ['/usr/local/lib'] include_dirs = ['/usr/local/include/suitesparse'] define_macros = [('SCIPY_UMFPACK_H', None), ('SCIPY_AMD_H', None)] swig_opts = ['-I/usr/local/include/suitesparse', '-I/usr/local/include/suitesparse'] blas_opt_info: blas_mkl_info: customize UnixCCompiler C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmp7biqmg8o/tmp creating /tmp/tmp7biqmg8o/tmp/tmp7biqmg8o compile options: '-MMD -MF /tmp/tmp7biqmg8o/file.c.d -c' cc: /tmp/tmp7biqmg8o/file.c libraries mkl_rt not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE blis_info: customize UnixCCompiler C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmp23w9y89n/tmp creating /tmp/tmp23w9y89n/tmp/tmp23w9y89n compile options: '-MMD -MF /tmp/tmp23w9y89n/file.c.d -c' cc: /tmp/tmp23w9y89n/file.c libraries blis not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE atlas_3_10_blas_threads_info: Setting PTATLAS=ATLAS customize UnixCCompiler C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpjb20ub5h/tmp creating /tmp/tmpjb20ub5h/tmp/tmpjb20ub5h compile options: '-MMD -MF /tmp/tmpjb20ub5h/file.c.d -c' cc: /tmp/tmpjb20ub5h/file.c libraries tatlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE atlas_3_10_blas_info: customize UnixCCompiler C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpm2h21hcu/tmp creating /tmp/tmpm2h21hcu/tmp/tmpm2h21hcu compile options: '-MMD -MF /tmp/tmpm2h21hcu/file.c.d -c' cc: /tmp/tmpm2h21hcu/file.c libraries satlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE atlas_blas_threads_info: Setting PTATLAS=ATLAS customize UnixCCompiler C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpawkgt0be/tmp creating /tmp/tmpawkgt0be/tmp/tmpawkgt0be compile options: '-MMD -MF /tmp/tmpawkgt0be/file.c.d -c' cc: /tmp/tmpawkgt0be/file.c libraries ptf77blas,ptcblas,atlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE atlas_blas_info: customize UnixCCompiler C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpxcm61ul_/tmp creating /tmp/tmpxcm61ul_/tmp/tmpxcm61ul_ compile options: '-MMD -MF /tmp/tmpxcm61ul_/file.c.d -c' cc: /tmp/tmpxcm61ul_/file.c libraries f77blas,cblas,atlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE accelerate_info: NOT AVAILABLE /usr/local/lib/python3.6/site-packages/numpy/distutils/system_info.py:641: UserWarning: Atlas (http://math-atlas.sourceforge.net/) libraries not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [atlas]) or by setting the ATLAS environment variable. self.calc_info() blas_info: customize UnixCCompiler C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpqczq3z28/tmp creating /tmp/tmpqczq3z28/tmp/tmpqczq3z28 compile options: '-MMD -MF /tmp/tmpqczq3z28/file.c.d -c' cc: /tmp/tmpqczq3z28/file.c customize UnixCCompiler C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpm0b5_79z/tmp creating /tmp/tmpm0b5_79z/tmp/tmpm0b5_79z compile options: '-MMD -MF /tmp/tmpm0b5_79z/file.c.d -c' cc: /tmp/tmpm0b5_79z/file.c C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpwaqbs6jb/tmp creating /tmp/tmpwaqbs6jb/tmp/tmpwaqbs6jb compile options: '-I/usr/include -I/usr/local/include -I/usr/local/include/suitesparse -c' cc: /tmp/tmpwaqbs6jb/source.c cc /tmp/tmpwaqbs6jb/tmp/tmpwaqbs6jb/source.o -L/usr/local/lib -lcblas -o /tmp/tmpwaqbs6jb/a.out customize UnixCCompiler C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpft8ctjfe/tmp creating /tmp/tmpft8ctjfe/tmp/tmpft8ctjfe compile options: '-MMD -MF /tmp/tmpft8ctjfe/file.c.d -c' cc: /tmp/tmpft8ctjfe/file.c FOUND: libraries = ['cblas', 'blas'] library_dirs = ['/usr/local/lib'] include_dirs = ['/usr/include', '/usr/local/include', '/usr/local/include/suitesparse'] language = c define_macros = [('HAVE_CBLAS', None)] FOUND: define_macros = [('NO_ATLAS_INFO', 1), ('HAVE_CBLAS', None)] libraries = ['cblas', 'blas'] library_dirs = ['/usr/local/lib'] include_dirs = ['/usr/include', '/usr/local/include', '/usr/local/include/suitesparse'] language = c running build running config_cc unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src build_src building extension "scikits.umfpack.__umfpack" sources creating build creating build/src.dragonfly-5.7-x86_64-3.6 creating build/src.dragonfly-5.7-x86_64-3.6/scikits creating build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack adding 'scikits/umfpack/umfpack.i' to sources. swig: scikits/umfpack/umfpack.i swig -python -I/usr/local/include/suitesparse -I/usr/local/include/suitesparse -I/usr/local/include/suitesparse -I/usr/include -I/usr/local/include -o build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c -outdir build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack scikits/umfpack/umfpack.i building data_files sources build_src: building npy-pkg config files running build_py creating build/lib.dragonfly-5.7-x86_64-3.6 creating build/lib.dragonfly-5.7-x86_64-3.6/scikits creating build/lib.dragonfly-5.7-x86_64-3.6/scikits/umfpack copying scikits/umfpack/_umfpack.py -> build/lib.dragonfly-5.7-x86_64-3.6/scikits/umfpack copying scikits/umfpack/__init__.py -> build/lib.dragonfly-5.7-x86_64-3.6/scikits/umfpack copying scikits/umfpack/version.py -> build/lib.dragonfly-5.7-x86_64-3.6/scikits/umfpack copying scikits/umfpack/interface.py -> build/lib.dragonfly-5.7-x86_64-3.6/scikits/umfpack copying scikits/umfpack/setup.py -> build/lib.dragonfly-5.7-x86_64-3.6/scikits/umfpack copying scikits/umfpack/umfpack.py -> build/lib.dragonfly-5.7-x86_64-3.6/scikits/umfpack copying build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack.py -> build/lib.dragonfly-5.7-x86_64-3.6/scikits/umfpack running build_ext customize UnixCCompiler C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpu2tbkzro/tmp creating /tmp/tmpu2tbkzro/tmp/tmpu2tbkzro compile options: '-MMD -MF /tmp/tmpu2tbkzro/file.c.d -c' cc: /tmp/tmpu2tbkzro/file.c customize UnixCCompiler using build_ext building 'scikits.umfpack.__umfpack' extension compiling C sources C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating build/temp.dragonfly-5.7-x86_64-3.6/build creating build/temp.dragonfly-5.7-x86_64-3.6/build/src.dragonfly-5.7-x86_64-3.6 creating build/temp.dragonfly-5.7-x86_64-3.6/build/src.dragonfly-5.7-x86_64-3.6/scikits creating build/temp.dragonfly-5.7-x86_64-3.6/build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack compile options: '-DSCIPY_UMFPACK_H -DSCIPY_AMD_H -DNO_ATLAS_INFO=1 -DHAVE_CBLAS -I/usr/local/include/suitesparse -I/usr/include -I/usr/local/include -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c' cc: build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c:3028: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c: In function '_wrap_umfpack_dl_solve': build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c:3485:52: warning: passing argument 2 of 'umfpack_dl_solve' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_dl_solve(arg1,(long long const (*))arg2,(long long const (*))arg3,(double const (*))arg4,arg5,(double const (*))arg6,arg7,(double const (*))arg8,arg9); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:48, from build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c:3027: /usr/local/include/suitesparse/umfpack_solve.h:26:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Ap [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c:3485:78: warning: passing argument 3 of 'umfpack_dl_solve' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_dl_solve(arg1,(long long const (*))arg2,(long long const (*))arg3,(double const (*))arg4,arg5,(double const (*))arg6,arg7,(double const (*))arg8,arg9); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:48, from build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c:3027: /usr/local/include/suitesparse/umfpack_solve.h:27:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Ai [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c: In function '_wrap_umfpack_zl_solve': build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c:3649:52: warning: passing argument 2 of 'umfpack_zl_solve' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_zl_solve(arg1,(long long const (*))arg2,(long long const (*))arg3,(double const (*))arg4,(double const (*))arg5,arg6,arg7,(double const (*))arg8,(double const (*))arg9,arg10,(double const (*))arg11,arg12); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:48, from build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c:3027: /usr/local/include/suitesparse/umfpack_solve.h:52:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Ap [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c:3649:78: warning: passing argument 3 of 'umfpack_zl_solve' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_zl_solve(arg1,(long long const (*))arg2,(long long const (*))arg3,(double const (*))arg4,(double const (*))arg5,arg6,arg7,(double const (*))arg8,(double const (*))arg9,arg10,(double const (*))arg11,arg12); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:48, from build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c:3027: /usr/local/include/suitesparse/umfpack_solve.h:53:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Ai [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c: In function '_wrap_umfpack_dl_triplet_to_col': build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c:3921:71: warning: passing argument 4 of 'umfpack_dl_triplet_to_col' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_dl_triplet_to_col(arg1,arg2,arg3,(long long const (*))arg4,(long long const (*))arg5,(double const (*))arg6,arg7,arg8,arg9,arg10); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:58, from build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c:3027: /usr/local/include/suitesparse/umfpack_triplet_to_col.h:29:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Ti [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c:3921:97: warning: passing argument 5 of 'umfpack_dl_triplet_to_col' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_dl_triplet_to_col(arg1,arg2,arg3,(long long const (*))arg4,(long long const (*))arg5,(double const (*))arg6,arg7,arg8,arg9,arg10); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:58, from build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c:3027: /usr/local/include/suitesparse/umfpack_triplet_to_col.h:30:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Tj [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c: In function '_wrap_umfpack_zl_triplet_to_col': build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c:4153:71: warning: passing argument 4 of 'umfpack_zl_triplet_to_col' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_zl_triplet_to_col(arg1,arg2,arg3,(long long const (*))arg4,(long long const (*))arg5,(double const (*))arg6,(double const (*))arg7,arg8,arg9,arg10,arg11,arg12); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:58, from build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c:3027: /usr/local/include/suitesparse/umfpack_triplet_to_col.h:57:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Ti [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c:4153:97: warning: passing argument 5 of 'umfpack_zl_triplet_to_col' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_zl_triplet_to_col(arg1,arg2,arg3,(long long const (*))arg4,(long long const (*))arg5,(double const (*))arg6,(double const (*))arg7,arg8,arg9,arg10,arg11,arg12); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:58, from build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c:3027: /usr/local/include/suitesparse/umfpack_triplet_to_col.h:58:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Tj [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c: In function '_wrap_umfpack_dl_col_to_triplet': build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c:4223:61: warning: passing argument 2 of 'umfpack_dl_col_to_triplet' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_dl_col_to_triplet(arg1,(long long const (*))arg2,arg3); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:59, from build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c:3027: /usr/local/include/suitesparse/umfpack_col_to_triplet.h:20:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Ap [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c: In function '_wrap_umfpack_zl_col_to_triplet': build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c:4293:61: warning: passing argument 2 of 'umfpack_zl_col_to_triplet' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_zl_col_to_triplet(arg1,(long long const (*))arg2,arg3); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:59, from build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c:3027: /usr/local/include/suitesparse/umfpack_col_to_triplet.h:34:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Ap [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c: In function '_wrap_umfpack_dl_transpose': build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c:4469:61: warning: passing argument 3 of 'umfpack_dl_transpose' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_dl_transpose(arg1,arg2,(long long const (*))arg3,(long long const (*))arg4,(double const (*))arg5,(long long const (*))arg6,(long long const (*))arg7,arg8,arg9,arg10); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:60, from build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c:3027: /usr/local/include/suitesparse/umfpack_transpose.h:28:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Ap [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c:4469:87: warning: passing argument 4 of 'umfpack_dl_transpose' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_dl_transpose(arg1,arg2,(long long const (*))arg3,(long long const (*))arg4,(double const (*))arg5,(long long const (*))arg6,(long long const (*))arg7,arg8,arg9,arg10); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:60, from build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c:3027: /usr/local/include/suitesparse/umfpack_transpose.h:29:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Ai [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c:4469:136: warning: passing argument 6 of 'umfpack_dl_transpose' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_dl_transpose(arg1,arg2,(long long const (*))arg3,(long long const (*))arg4,(double const (*))arg5,(long long const (*))arg6,(long long const (*))arg7,arg8,arg9,arg10); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:60, from build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c:3027: /usr/local/include/suitesparse/umfpack_transpose.h:31:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long P [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~ build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c:4469:162: warning: passing argument 7 of 'umfpack_dl_transpose' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_dl_transpose(arg1,arg2,(long long const (*))arg3,(long long const (*))arg4,(double const (*))arg5,(long long const (*))arg6,(long long const (*))arg7,arg8,arg9,arg10); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:60, from build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c:3027: /usr/local/include/suitesparse/umfpack_transpose.h:32:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Q [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~ build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c: In function '_wrap_umfpack_zl_transpose': build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c:4687:61: warning: passing argument 3 of 'umfpack_zl_transpose' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_zl_transpose(arg1,arg2,(long long const (*))arg3,(long long const (*))arg4,(double const (*))arg5,(double const (*))arg6,(long long const (*))arg7,(long long const (*))arg8,arg9,arg10,arg11,arg12,arg13); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:60, from build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c:3027: /usr/local/include/suitesparse/umfpack_transpose.h:57:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Ap [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c:4687:87: warning: passing argument 4 of 'umfpack_zl_transpose' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_zl_transpose(arg1,arg2,(long long const (*))arg3,(long long const (*))arg4,(double const (*))arg5,(double const (*))arg6,(long long const (*))arg7,(long long const (*))arg8,arg9,arg10,arg11,arg12,arg13); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:60, from build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c:3027: /usr/local/include/suitesparse/umfpack_transpose.h:58:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Ai [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c:4687:159: warning: passing argument 7 of 'umfpack_zl_transpose' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_zl_transpose(arg1,arg2,(long long const (*))arg3,(long long const (*))arg4,(double const (*))arg5,(double const (*))arg6,(long long const (*))arg7,(long long const (*))arg8,arg9,arg10,arg11,arg12,arg13); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:60, from build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c:3027: /usr/local/include/suitesparse/umfpack_transpose.h:60:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long P [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~ build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c:4687:185: warning: passing argument 8 of 'umfpack_zl_transpose' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_zl_transpose(arg1,arg2,(long long const (*))arg3,(long long const (*))arg4,(double const (*))arg5,(double const (*))arg6,(long long const (*))arg7,(long long const (*))arg8,arg9,arg10,arg11,arg12,arg13); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:60, from build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c:3027: /usr/local/include/suitesparse/umfpack_transpose.h:61:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Q [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~ build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c: In function '_wrap_umfpack_dl_symbolic': build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c:5362:60: warning: passing argument 3 of 'umfpack_dl_symbolic' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_dl_symbolic(arg1,arg2,(long long const (*))arg3,(long long const (*))arg4,(double const (*))arg5,arg6,(double const (*))arg7,arg8); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:46, from build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c:3027: /usr/local/include/suitesparse/umfpack_symbolic.h:26:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Ap [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c:5362:86: warning: passing argument 4 of 'umfpack_dl_symbolic' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_dl_symbolic(arg1,arg2,(long long const (*))arg3,(long long const (*))arg4,(double const (*))arg5,arg6,(double const (*))arg7,arg8); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:46, from build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c:3027: /usr/local/include/suitesparse/umfpack_symbolic.h:27:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Ai [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c: In function '_wrap_umfpack_zl_symbolic': build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c:5502:60: warning: passing argument 3 of 'umfpack_zl_symbolic' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_zl_symbolic(arg1,arg2,(long long const (*))arg3,(long long const (*))arg4,(double const (*))arg5,(double const (*))arg6,arg7,(double const (*))arg8,arg9); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:46, from build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c:3027: /usr/local/include/suitesparse/umfpack_symbolic.h:50:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Ap [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c:5502:86: warning: passing argument 4 of 'umfpack_zl_symbolic' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_zl_symbolic(arg1,arg2,(long long const (*))arg3,(long long const (*))arg4,(double const (*))arg5,(double const (*))arg6,arg7,(double const (*))arg8,arg9); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:46, from build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c:3027: /usr/local/include/suitesparse/umfpack_symbolic.h:51:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Ai [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c: In function '_wrap_umfpack_dl_numeric': build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c:5618:49: warning: passing argument 1 of 'umfpack_dl_numeric' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_dl_numeric((long long const (*))arg1,(long long const (*))arg2,(double const (*))arg3,arg4,arg5,(double const (*))arg6,arg7); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:47, from build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c:3027: /usr/local/include/suitesparse/umfpack_numeric.h:23:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Ap [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c:5618:75: warning: passing argument 2 of 'umfpack_dl_numeric' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_dl_numeric((long long const (*))arg1,(long long const (*))arg2,(double const (*))arg3,arg4,arg5,(double const (*))arg6,arg7); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:47, from build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c:3027: /usr/local/include/suitesparse/umfpack_numeric.h:24:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Ai [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c: In function '_wrap_umfpack_zl_numeric': build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c:5744:49: warning: passing argument 1 of 'umfpack_zl_numeric' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_zl_numeric((long long const (*))arg1,(long long const (*))arg2,(double const (*))arg3,(double const (*))arg4,arg5,arg6,(double const (*))arg7,arg8); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:47, from build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c:3027: /usr/local/include/suitesparse/umfpack_numeric.h:45:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Ap [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c:5744:75: warning: passing argument 2 of 'umfpack_zl_numeric' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_zl_numeric((long long const (*))arg1,(long long const (*))arg2,(double const (*))arg3,(double const (*))arg4,arg5,arg6,(double const (*))arg7,arg8); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:47, from build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.c:3027: /usr/local/include/suitesparse/umfpack_numeric.h:46:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Ai [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-x86_64-3.6/build/src.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack_wrap.o -L/usr/local/lib -L/usr/local/lib -lrt -lumfpack -lamd -lamd -lumfpack -lcblas -lblas -lpython3.6m -o build/lib.dragonfly-5.7-x86_64-3.6/scikits/umfpack/__umfpack.so SUCCEEDED 00:00:44 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- x===> Staging for py36-scikit-umfpack-0.3.2_2 ===> Generating temporary packing list umfpack_info: customize UnixCCompiler C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpz0cgcj51/tmp creating /tmp/tmpz0cgcj51/tmp/tmpz0cgcj51 compile options: '-MMD -MF /tmp/tmpz0cgcj51/file.c.d -c' cc: /tmp/tmpz0cgcj51/file.c amd_info: customize UnixCCompiler C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpydytt96v/tmp creating /tmp/tmpydytt96v/tmp/tmpydytt96v compile options: '-MMD -MF /tmp/tmpydytt96v/file.c.d -c' cc: /tmp/tmpydytt96v/file.c customize UnixCCompiler C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmp_bie87zt/tmp creating /tmp/tmp_bie87zt/tmp/tmp_bie87zt compile options: '-MMD -MF /tmp/tmp_bie87zt/file.c.d -c' cc: /tmp/tmp_bie87zt/file.c FOUND: libraries = ['amd', 'amd'] library_dirs = ['/usr/local/lib'] include_dirs = ['/usr/local/include/suitesparse'] define_macros = [('SCIPY_AMD_H', None)] swig_opts = ['-I/usr/local/include/suitesparse'] customize UnixCCompiler C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmp3n_b00w4/tmp creating /tmp/tmp3n_b00w4/tmp/tmp3n_b00w4 compile options: '-MMD -MF /tmp/tmp3n_b00w4/file.c.d -c' cc: /tmp/tmp3n_b00w4/file.c FOUND: libraries = ['umfpack', 'amd', 'amd', 'umfpack'] library_dirs = ['/usr/local/lib'] include_dirs = ['/usr/local/include/suitesparse'] define_macros = [('SCIPY_UMFPACK_H', None), ('SCIPY_AMD_H', None)] swig_opts = ['-I/usr/local/include/suitesparse', '-I/usr/local/include/suitesparse'] blas_opt_info: blas_mkl_info: customize UnixCCompiler C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpev6qyuul/tmp creating /tmp/tmpev6qyuul/tmp/tmpev6qyuul compile options: '-MMD -MF /tmp/tmpev6qyuul/file.c.d -c' cc: /tmp/tmpev6qyuul/file.c libraries mkl_rt not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE blis_info: customize UnixCCompiler C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpa84abw1e/tmp creating /tmp/tmpa84abw1e/tmp/tmpa84abw1e compile options: '-MMD -MF /tmp/tmpa84abw1e/file.c.d -c' cc: /tmp/tmpa84abw1e/file.c libraries blis not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE atlas_3_10_blas_threads_info: Setting PTATLAS=ATLAS customize UnixCCompiler C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmps20ed5gl/tmp creating /tmp/tmps20ed5gl/tmp/tmps20ed5gl compile options: '-MMD -MF /tmp/tmps20ed5gl/file.c.d -c' cc: /tmp/tmps20ed5gl/file.c libraries tatlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE atlas_3_10_blas_info: customize UnixCCompiler C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmphph5li6u/tmp creating /tmp/tmphph5li6u/tmp/tmphph5li6u compile options: '-MMD -MF /tmp/tmphph5li6u/file.c.d -c' cc: /tmp/tmphph5li6u/file.c libraries satlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE atlas_blas_threads_info: Setting PTATLAS=ATLAS customize UnixCCompiler C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpopbdq8hs/tmp creating /tmp/tmpopbdq8hs/tmp/tmpopbdq8hs compile options: '-MMD -MF /tmp/tmpopbdq8hs/file.c.d -c' cc: /tmp/tmpopbdq8hs/file.c libraries ptf77blas,ptcblas,atlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE atlas_blas_info: customize UnixCCompiler C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpfjkfkall/tmp creating /tmp/tmpfjkfkall/tmp/tmpfjkfkall compile options: '-MMD -MF /tmp/tmpfjkfkall/file.c.d -c' cc: /tmp/tmpfjkfkall/file.c libraries f77blas,cblas,atlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE accelerate_info: NOT AVAILABLE /usr/local/lib/python3.6/site-packages/numpy/distutils/system_info.py:641: UserWarning: Atlas (http://math-atlas.sourceforge.net/) libraries not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [atlas]) or by setting the ATLAS environment variable. self.calc_info() blas_info: customize UnixCCompiler C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpthepyx4c/tmp creating /tmp/tmpthepyx4c/tmp/tmpthepyx4c compile options: '-MMD -MF /tmp/tmpthepyx4c/file.c.d -c' cc: /tmp/tmpthepyx4c/file.c customize UnixCCompiler C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpjfigbhct/tmp creating /tmp/tmpjfigbhct/tmp/tmpjfigbhct compile options: '-MMD -MF /tmp/tmpjfigbhct/file.c.d -c' cc: /tmp/tmpjfigbhct/file.c C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmp5jqr71un/tmp creating /tmp/tmp5jqr71un/tmp/tmp5jqr71un compile options: '-I/usr/include -I/usr/local/include -I/usr/local/include/suitesparse -c' cc: /tmp/tmp5jqr71un/source.c cc /tmp/tmp5jqr71un/tmp/tmp5jqr71un/source.o -L/usr/local/lib -lcblas -o /tmp/tmp5jqr71un/a.out customize UnixCCompiler C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpsqj86p_p/tmp creating /tmp/tmpsqj86p_p/tmp/tmpsqj86p_p compile options: '-MMD -MF /tmp/tmpsqj86p_p/file.c.d -c' cc: /tmp/tmpsqj86p_p/file.c FOUND: libraries = ['cblas', 'blas'] library_dirs = ['/usr/local/lib'] include_dirs = ['/usr/include', '/usr/local/include', '/usr/local/include/suitesparse'] language = c define_macros = [('HAVE_CBLAS', None)] FOUND: define_macros = [('NO_ATLAS_INFO', 1), ('HAVE_CBLAS', None)] libraries = ['cblas', 'blas'] library_dirs = ['/usr/local/lib'] include_dirs = ['/usr/include', '/usr/local/include', '/usr/local/include/suitesparse'] language = c running install running build running config_cc unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src build_src building extension "scikits.umfpack.__umfpack" sources adding 'scikits/umfpack/umfpack.i' to sources. building data_files sources build_src: building npy-pkg config files running build_py copying scikits/umfpack/version.py -> build/lib.dragonfly-5.7-x86_64-3.6/scikits/umfpack running build_ext customize UnixCCompiler C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpw511prda/tmp creating /tmp/tmpw511prda/tmp/tmpw511prda compile options: '-MMD -MF /tmp/tmpw511prda/file.c.d -c' cc: /tmp/tmpw511prda/file.c customize UnixCCompiler using build_ext running install_lib creating /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.6 creating /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.6/site-packages creating /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.6/site-packages/scikits creating /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.6/site-packages/scikits/umfpack copying build/lib.dragonfly-5.7-x86_64-3.6/scikits/umfpack/__umfpack.so -> /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.6/site-packages/scikits/umfpack copying build/lib.dragonfly-5.7-x86_64-3.6/scikits/umfpack/setup.py -> /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.6/site-packages/scikits/umfpack copying build/lib.dragonfly-5.7-x86_64-3.6/scikits/umfpack/umfpack.py -> /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.6/site-packages/scikits/umfpack copying build/lib.dragonfly-5.7-x86_64-3.6/scikits/umfpack/_umfpack.py -> /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.6/site-packages/scikits/umfpack copying build/lib.dragonfly-5.7-x86_64-3.6/scikits/umfpack/version.py -> /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.6/site-packages/scikits/umfpack copying build/lib.dragonfly-5.7-x86_64-3.6/scikits/umfpack/__init__.py -> /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.6/site-packages/scikits/umfpack copying build/lib.dragonfly-5.7-x86_64-3.6/scikits/umfpack/interface.py -> /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.6/site-packages/scikits/umfpack byte-compiling /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.6/site-packages/scikits/umfpack/setup.py to setup.cpython-36.pyc byte-compiling /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.6/site-packages/scikits/umfpack/umfpack.py to umfpack.cpython-36.pyc byte-compiling /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.6/site-packages/scikits/umfpack/_umfpack.py to _umfpack.cpython-36.pyc byte-compiling /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.6/site-packages/scikits/umfpack/version.py to version.cpython-36.pyc byte-compiling /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.6/site-packages/scikits/umfpack/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.6/site-packages/scikits/umfpack/interface.py to interface.cpython-36.pyc writing byte-compilation script '/tmp/tmp1gn3g9oq.py' /usr/local/bin/python3.6 /tmp/tmp1gn3g9oq.py removing /tmp/tmp1gn3g9oq.py running install_data creating /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.6/site-packages/scikits/umfpack/tests copying scikits/umfpack/tests/try_umfpack.py -> /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.6/site-packages/scikits/umfpack/tests/ copying scikits/umfpack/tests/test_umfpack.py -> /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.6/site-packages/scikits/umfpack/tests/ copying scikits/umfpack/tests/test_interface.py -> /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.6/site-packages/scikits/umfpack/tests/ copying scikits/__init__.py -> /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.6/site-packages/scikits copying MANIFEST.in -> /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.6/site-packages/ running install_clib customize UnixCCompiler C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpoc5mfcqi/tmp creating /tmp/tmpoc5mfcqi/tmp/tmpoc5mfcqi compile options: '-MMD -MF /tmp/tmpoc5mfcqi/file.c.d -c' cc: /tmp/tmpoc5mfcqi/file.c running install_egg_info running egg_info creating scikit_umfpack.egg-info writing scikit_umfpack.egg-info/PKG-INFO writing dependency_links to scikit_umfpack.egg-info/dependency_links.txt writing requirements to scikit_umfpack.egg-info/requires.txt writing top-level names to scikit_umfpack.egg-info/top_level.txt writing manifest file 'scikit_umfpack.egg-info/SOURCES.txt' reading manifest file 'scikit_umfpack.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'scikit_umfpack.egg-info/SOURCES.txt' Copying scikit_umfpack.egg-info to /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.6/site-packages/scikit_umfpack-0.3.2-py3.6.egg-info running install_scripts writing list of installed files to '/construction/math/py-scikit-umfpack/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Error: /usr/local/lib/python3.6/site-packages/scikits/umfpack/__umfpack.so is linked to /usr/local/lib/liblapack.so.4 from math/lapack but it is not declared as a dependency Warning: you need LIB_DEPENDS+=liblapack.so:math/lapack Error: /usr/local/lib/python3.6/site-packages/scikits/umfpack/__umfpack.so is linked to /usr/local/lib/libopenblasp.so.0 from math/openblas but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libopenblasp.so:math/openblas Error: /usr/local/lib/python3.6/site-packages/scikits/umfpack/__umfpack.so is linked to /usr/local/lib/gcc8/libgfortran.so.5 from lang/gcc8 but it is not declared as a dependency Error: /usr/local/lib/python3.6/site-packages/scikits/umfpack/__umfpack.so is linked to /usr/local/lib/gcc8/libgcc_s.so.1 from lang/gcc8 but it is not declared as a dependency Error: /usr/local/lib/python3.6/site-packages/scikits/umfpack/__umfpack.so is linked to /usr/local/lib/gcc8/libquadmath.so.0 from lang/gcc8 but it is not declared as a dependency Error: /usr/local/lib/python3.6/site-packages/scikits/umfpack/__umfpack.so is linked to /usr/local/lib/libintl.so.8 from devel/gettext-runtime but it is not declared as a dependency Warning: you need USES+=gettext-runtime Error: /usr/local/lib/python3.6/site-packages/scikits/umfpack/__umfpack.so is linked to /usr/local/lib/libmetis.so.2 from math/metis but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libmetis.so:math/metis Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:38 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- x====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- x===> Building package for py36-scikit-umfpack-0.3.2_2 file sizes/checksums [30]: 0% file sizes/checksums [30]: 100% packing files [30]: 0% packing files [30]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:01 TOTAL TIME 00:02:23