------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/metis-5.1.0_8.txz Installing /packages/All/tbb-2020.1.txz Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/gmp-6.2.0.txz Installing /packages/All/mpfr-4.0.2.txz Installing /packages/All/mpc-1.1.0_2.txz UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/gettext-runtime-0.20.1.txz Installing /packages/All/binutils-2.33.1_2,1.txz Installing /packages/All/gcc8-8.4.0.txz ===== Message from gcc8-8.4.0: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/openblas-0.3.7_2,1.txz Installing /packages/All/suitesparse-5.4.0_5.txz Installing /packages/All/expat-2.2.8.txz Installing /packages/All/libffi-3.2.1_3.txz Installing /packages/All/ncurses-6.1.20190525.txz Installing /packages/All/readline-8.0.4.txz Installing /packages/All/openssl-1.1.1d,1.txz Installing /packages/All/python27-2.7.17_1.txz ===== Message from python27-2.7.17_1: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter Installing /packages/All/py27-setuptools-44.0.0.txz ===== Message from py27-setuptools-44.0.0: -- Only /usr/local/bin/easy_install-2.7 script has been installed since Python 2.7 is not the default Python version. Installing /packages/All/py27-numpy-1.16.5_4,1.txz UNFLAVORED devel/binutils -> use devel/binutils@native UNFLAVORED devel/binutils -> use devel/binutils@native UNFLAVORED devel/binutils -> use devel/binutils@native SUCCEEDED 00:00:36 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- /!\ py27-pysparse-1.3_10: Makefile warnings, please consider fixing /!\ lang/python27 reached End of Life and will be removed on 2020-12-31, consider converting to a modern version of python ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses deprecated version of python. It is scheduled to be removed on or after 2020-08-15. SUCCEEDED 00:00:10 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> py27-pysparse-1.3_10 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- /!\ py27-pysparse-1.3_10: Makefile warnings, please consider fixing /!\ lang/python27 reached End of Life and will be removed on 2020-12-31, consider converting to a modern version of python ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses deprecated version of python. It is scheduled to be removed on or after 2020-08-15. ===> py27-pysparse-1.3_10 depends on file: /usr/local/sbin/pkg - found => PythonOptimizers-pysparse-1.3-f8430bd_GH0.tar.gz doesn't seem to exist in /distfiles/. => Attempting to fetch https://codeload.github.com/PythonOptimizers/pysparse/tar.gz/f8430bd?dummy=/PythonOptimizers-pysparse-1.3-f8430bd_GH0.tar.gz fetch: https://codeload.github.com/PythonOptimizers/pysparse/tar.gz/f8430bd?dummy=/PythonOptimizers-pysparse-1.3-f8430bd_GH0.tar.gz: size unknown fetch: https://codeload.github.com/PythonOptimizers/pysparse/tar.gz/f8430bd?dummy=/PythonOptimizers-pysparse-1.3-f8430bd_GH0.tar.gz: size of remote file is not known PythonOptimizers-pysparse-1.3-f8430bd_GH0.tar. 0 B 0 Bps PythonOptimizers-pysparse-1.3-f8430bd_GH0.tar. 448 kB 2665 kBps PythonOptimizers-pysparse-1.3-f8430bd_GH0.tar. 1271 kB 3994 kBps 01s ===> Fetching all distfiles required by py27-pysparse-1.3_10 for building SUCCEEDED 00:00:11 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- /!\ py27-pysparse-1.3_10: Makefile warnings, please consider fixing /!\ lang/python27 reached End of Life and will be removed on 2020-12-31, consider converting to a modern version of python ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses deprecated version of python. It is scheduled to be removed on or after 2020-08-15. ===> py27-pysparse-1.3_10 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py27-pysparse-1.3_10 for building => SHA256 Checksum OK for PythonOptimizers-pysparse-1.3-f8430bd_GH0.tar.gz. SUCCEEDED 00:00:10 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- /!\ py27-pysparse-1.3_10: Makefile warnings, please consider fixing /!\ lang/python27 reached End of Life and will be removed on 2020-12-31, consider converting to a modern version of python ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses deprecated version of python. It is scheduled to be removed on or after 2020-08-15. ===> py27-pysparse-1.3_10 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py27-pysparse-1.3_10 for building ===> Extracting for py27-pysparse-1.3_10 => SHA256 Checksum OK for PythonOptimizers-pysparse-1.3-f8430bd_GH0.tar.gz. Extracted Memory Use: 4.45M SUCCEEDED 00:00:10 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for py27-pysparse-1.3_10 ===> Applying ports patches for py27-pysparse-1.3_10 SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> py27-pysparse-1.3_10 depends on package: py27-numpy>=1.2,1 - found ===> py27-pysparse-1.3_10 depends on executable: gfortran8 - found ===> py27-pysparse-1.3_10 depends on package: py27-setuptools>0 - found ===> py27-pysparse-1.3_10 depends on file: /usr/local/bin/python2.7 - found ===> py27-pysparse-1.3_10 depends on file: /usr/local/bin/as - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- ===> py27-pysparse-1.3_10 depends on shared library: libopenblas.so - found (/usr/local/lib/libopenblas.so) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> py27-pysparse-1.3_10 depends on package: py27-numpy>=1.2,1 - found ===> py27-pysparse-1.3_10 depends on executable: gfortran8 - found ===> py27-pysparse-1.3_10 depends on package: py27-setuptools>0 - found ===> py27-pysparse-1.3_10 depends on file: /usr/local/bin/python2.7 - found ===> py27-pysparse-1.3_10 depends on file: /usr/local/bin/as - found ===> py27-pysparse-1.3_10 depends on shared library: libopenblas.so - found (/usr/local/lib/libopenblas.so) ===> Configuring for py27-pysparse-1.3_10 blas_opt_info: blas_mkl_info: customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpkh6rio/tmp creating /tmp/tmpkh6rio/tmp/tmpkh6rio compile options: '-MMD -MF /tmp/tmpkh6rio/file.c.d -c' cc: /tmp/tmpkh6rio/file.c libraries mkl_rt not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../../'] NOT AVAILABLE blis_info: customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpSNzp4f/tmp creating /tmp/tmpSNzp4f/tmp/tmpSNzp4f compile options: '-MMD -MF /tmp/tmpSNzp4f/file.c.d -c' cc: /tmp/tmpSNzp4f/file.c libraries blis not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../../'] NOT AVAILABLE atlas_3_10_blas_threads_info: Setting PTATLAS=ATLAS customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpjzkxrX/tmp creating /tmp/tmpjzkxrX/tmp/tmpjzkxrX compile options: '-MMD -MF /tmp/tmpjzkxrX/file.c.d -c' cc: /tmp/tmpjzkxrX/file.c libraries tatlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../../'] NOT AVAILABLE atlas_3_10_blas_info: customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmp9MFicg/tmp creating /tmp/tmp9MFicg/tmp/tmp9MFicg compile options: '-MMD -MF /tmp/tmp9MFicg/file.c.d -c' cc: /tmp/tmp9MFicg/file.c libraries satlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../../'] NOT AVAILABLE atlas_blas_threads_info: Setting PTATLAS=ATLAS customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpHPMNhc/tmp creating /tmp/tmpHPMNhc/tmp/tmpHPMNhc compile options: '-MMD -MF /tmp/tmpHPMNhc/file.c.d -c' cc: /tmp/tmpHPMNhc/file.c libraries ptf77blas,ptcblas,atlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../../'] NOT AVAILABLE atlas_blas_info: customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpGel0CI/tmp creating /tmp/tmpGel0CI/tmp/tmpGel0CI compile options: '-MMD -MF /tmp/tmpGel0CI/file.c.d -c' cc: /tmp/tmpGel0CI/file.c libraries f77blas,cblas,atlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../../'] NOT AVAILABLE accelerate_info: NOT AVAILABLE /usr/local/lib/python2.7/site-packages/numpy/distutils/system_info.py:641: UserWarning: Atlas (http://math-atlas.sourceforge.net/) libraries not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [atlas]) or by setting the ATLAS environment variable. self.calc_info() blas_info: customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmp5u8LSL/tmp creating /tmp/tmp5u8LSL/tmp/tmp5u8LSL compile options: '-MMD -MF /tmp/tmp5u8LSL/file.c.d -c' cc: /tmp/tmp5u8LSL/file.c libraries blas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../../'] NOT AVAILABLE /usr/local/lib/python2.7/site-packages/numpy/distutils/system_info.py:641: UserWarning: Blas (http://www.netlib.org/blas/) libraries not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [blas]) or by setting the BLAS environment variable. self.calc_info() blas_src_info: /usr/local/lib/python2.7/site-packages/numpy/distutils/system_info.py:1951: UserWarning: Specified path /usr/local/src is invalid. pre_dirs = system_info.get_paths(self, section, key) NOT AVAILABLE /usr/local/lib/python2.7/site-packages/numpy/distutils/system_info.py:641: UserWarning: Blas (http://www.netlib.org/blas/) sources not found. Directories to search for the sources can be specified in the numpy/distutils/site.cfg file (section [blas_src]) or by setting the BLAS_SRC environment variable. self.calc_info() NOT AVAILABLE No blas info found Sparse:: Using BLAS info: {} Using dflt_lib_dirs = [] Using dflt_libs = [] No blas info found Eigen:: Using BLAS info: {} lapack_opt_info: lapack_mkl_info: customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpxozub2/tmp creating /tmp/tmpxozub2/tmp/tmpxozub2 compile options: '-MMD -MF /tmp/tmpxozub2/file.c.d -c' cc: /tmp/tmpxozub2/file.c libraries mkl_rt not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../../'] NOT AVAILABLE openblas_lapack_info: customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpBIjGCX/tmp creating /tmp/tmpBIjGCX/tmp/tmpBIjGCX compile options: '-MMD -MF /tmp/tmpBIjGCX/file.c.d -c' cc: /tmp/tmpBIjGCX/file.c customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpRMrk_W/tmp creating /tmp/tmpRMrk_W/tmp/tmpRMrk_W compile options: '-MMD -MF /tmp/tmpRMrk_W/file.c.d -c' cc: /tmp/tmpRMrk_W/file.c customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpfOOP35/tmp creating /tmp/tmpfOOP35/tmp/tmpfOOP35 compile options: '-MMD -MF /tmp/tmpfOOP35/file.c.d -c' cc: /tmp/tmpfOOP35/file.c C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmp18xeVx/tmp creating /tmp/tmp18xeVx/tmp/tmp18xeVx compile options: '-c' cc: /tmp/tmp18xeVx/source.c cc /tmp/tmp18xeVx/tmp/tmp18xeVx/source.o -L/usr/local/lib -L/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../../ -lopenblas -lgfortran -o /tmp/tmp18xeVx/a.out customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmp1jhE7k/tmp creating /tmp/tmp1jhE7k/tmp/tmp1jhE7k compile options: '-MMD -MF /tmp/tmp1jhE7k/file.c.d -c' cc: /tmp/tmp1jhE7k/file.c customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpwvET09/tmp creating /tmp/tmpwvET09/tmp/tmpwvET09 compile options: '-MMD -MF /tmp/tmpwvET09/file.c.d -c' cc: /tmp/tmpwvET09/file.c FOUND: libraries = ['openblas', 'gfortran', 'openblas', 'gfortran'] library_dirs = ['/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../../'] language = c define_macros = [('HAVE_CBLAS', None)] FOUND: libraries = ['openblas', 'gfortran', 'openblas', 'gfortran'] library_dirs = ['/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../../'] language = c define_macros = [('HAVE_CBLAS', None)] Eigen:: Using LAPACK info: {'libraries': ['openblas', 'gfortran', 'openblas', 'gfortran'], 'library_dirs': ['/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../../'], 'define_macros': [('HAVE_CBLAS', None)], 'language': 'c'} No blas info found Direct:: Using BLAS info: {} Using default UMFPACK and AMD If you do not like this, edit the [UMFPACK] and [AMD] sections of site.cfg Using default SuperLU. If you do not like this, edit the [SuperLU] section of site.cfg No blas info found No blas info found /usr/local/lib/python2.7/site-packages/setuptools/dist.py:476: UserWarning: Normalizing '1.3-dev' to '1.3.dev0' normalized_version, running config SUCCEEDED 00:00:02 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for py27-pysparse-1.3_10 blas_opt_info: blas_mkl_info: customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpcBQo3V/tmp creating /tmp/tmpcBQo3V/tmp/tmpcBQo3V compile options: '-MMD -MF /tmp/tmpcBQo3V/file.c.d -c' cc: /tmp/tmpcBQo3V/file.c libraries mkl_rt not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../../'] NOT AVAILABLE blis_info: customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpHnXAre/tmp creating /tmp/tmpHnXAre/tmp/tmpHnXAre compile options: '-MMD -MF /tmp/tmpHnXAre/file.c.d -c' cc: /tmp/tmpHnXAre/file.c libraries blis not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../../'] NOT AVAILABLE atlas_3_10_blas_threads_info: Setting PTATLAS=ATLAS customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpAx0HGb/tmp creating /tmp/tmpAx0HGb/tmp/tmpAx0HGb compile options: '-MMD -MF /tmp/tmpAx0HGb/file.c.d -c' cc: /tmp/tmpAx0HGb/file.c libraries tatlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../../'] NOT AVAILABLE atlas_3_10_blas_info: customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpt0yV1v/tmp creating /tmp/tmpt0yV1v/tmp/tmpt0yV1v compile options: '-MMD -MF /tmp/tmpt0yV1v/file.c.d -c' cc: /tmp/tmpt0yV1v/file.c libraries satlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../../'] NOT AVAILABLE atlas_blas_threads_info: Setting PTATLAS=ATLAS customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmp39rYz0/tmp creating /tmp/tmp39rYz0/tmp/tmp39rYz0 compile options: '-MMD -MF /tmp/tmp39rYz0/file.c.d -c' cc: /tmp/tmp39rYz0/file.c libraries ptf77blas,ptcblas,atlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../../'] NOT AVAILABLE atlas_blas_info: customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpzgpU50/tmp creating /tmp/tmpzgpU50/tmp/tmpzgpU50 compile options: '-MMD -MF /tmp/tmpzgpU50/file.c.d -c' cc: /tmp/tmpzgpU50/file.c libraries f77blas,cblas,atlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../../'] NOT AVAILABLE accelerate_info: NOT AVAILABLE /usr/local/lib/python2.7/site-packages/numpy/distutils/system_info.py:641: UserWarning: Atlas (http://math-atlas.sourceforge.net/) libraries not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [atlas]) or by setting the ATLAS environment variable. self.calc_info() blas_info: customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpt8EslG/tmp creating /tmp/tmpt8EslG/tmp/tmpt8EslG compile options: '-MMD -MF /tmp/tmpt8EslG/file.c.d -c' cc: /tmp/tmpt8EslG/file.c libraries blas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../../'] NOT AVAILABLE /usr/local/lib/python2.7/site-packages/numpy/distutils/system_info.py:641: UserWarning: Blas (http://www.netlib.org/blas/) libraries not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [blas]) or by setting the BLAS environment variable. self.calc_info() blas_src_info: /usr/local/lib/python2.7/site-packages/numpy/distutils/system_info.py:1951: UserWarning: Specified path /usr/local/src is invalid. pre_dirs = system_info.get_paths(self, section, key) NOT AVAILABLE /usr/local/lib/python2.7/site-packages/numpy/distutils/system_info.py:641: UserWarning: Blas (http://www.netlib.org/blas/) sources not found. Directories to search for the sources can be specified in the numpy/distutils/site.cfg file (section [blas_src]) or by setting the BLAS_SRC environment variable. self.calc_info() NOT AVAILABLE No blas info found Sparse:: Using BLAS info: {} Using dflt_lib_dirs = [] Using dflt_libs = [] No blas info found Eigen:: Using BLAS info: {} lapack_opt_info: lapack_mkl_info: customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpnH7VHV/tmp creating /tmp/tmpnH7VHV/tmp/tmpnH7VHV compile options: '-MMD -MF /tmp/tmpnH7VHV/file.c.d -c' cc: /tmp/tmpnH7VHV/file.c libraries mkl_rt not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../../'] NOT AVAILABLE openblas_lapack_info: customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpiEtXeE/tmp creating /tmp/tmpiEtXeE/tmp/tmpiEtXeE compile options: '-MMD -MF /tmp/tmpiEtXeE/file.c.d -c' cc: /tmp/tmpiEtXeE/file.c customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpERo58D/tmp creating /tmp/tmpERo58D/tmp/tmpERo58D compile options: '-MMD -MF /tmp/tmpERo58D/file.c.d -c' cc: /tmp/tmpERo58D/file.c customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpjHcjJS/tmp creating /tmp/tmpjHcjJS/tmp/tmpjHcjJS compile options: '-MMD -MF /tmp/tmpjHcjJS/file.c.d -c' cc: /tmp/tmpjHcjJS/file.c C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpZ0UwXW/tmp creating /tmp/tmpZ0UwXW/tmp/tmpZ0UwXW compile options: '-c' cc: /tmp/tmpZ0UwXW/source.c cc /tmp/tmpZ0UwXW/tmp/tmpZ0UwXW/source.o -L/usr/local/lib -L/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../../ -lopenblas -lgfortran -o /tmp/tmpZ0UwXW/a.out customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpM94XEC/tmp creating /tmp/tmpM94XEC/tmp/tmpM94XEC compile options: '-MMD -MF /tmp/tmpM94XEC/file.c.d -c' cc: /tmp/tmpM94XEC/file.c customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmp6kChxg/tmp creating /tmp/tmp6kChxg/tmp/tmp6kChxg compile options: '-MMD -MF /tmp/tmp6kChxg/file.c.d -c' cc: /tmp/tmp6kChxg/file.c FOUND: libraries = ['openblas', 'gfortran', 'openblas', 'gfortran'] library_dirs = ['/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../../'] language = c define_macros = [('HAVE_CBLAS', None)] FOUND: libraries = ['openblas', 'gfortran', 'openblas', 'gfortran'] library_dirs = ['/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../../'] language = c define_macros = [('HAVE_CBLAS', None)] Eigen:: Using LAPACK info: {'libraries': ['openblas', 'gfortran', 'openblas', 'gfortran'], 'library_dirs': ['/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../../'], 'define_macros': [('HAVE_CBLAS', None)], 'language': 'c'} No blas info found Direct:: Using BLAS info: {} Using default UMFPACK and AMD If you do not like this, edit the [UMFPACK] and [AMD] sections of site.cfg Using default SuperLU. If you do not like this, edit the [SuperLU] section of site.cfg No blas info found No blas info found /usr/local/lib/python2.7/site-packages/setuptools/dist.py:476: UserWarning: Normalizing '1.3-dev' to '1.3.dev0' normalized_version, running build running config_cc unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src build_src building py_modules sources creating build creating build/src.dragonfly-5.9-x86_64-2.7 creating build/src.dragonfly-5.9-x86_64-2.7/pysparse creating build/src.dragonfly-5.9-x86_64-2.7/pysparse/sparse creating build/src.dragonfly-5.9-x86_64-2.7/pysparse/eigen creating build/src.dragonfly-5.9-x86_64-2.7/pysparse/direct creating build/src.dragonfly-5.9-x86_64-2.7/pysparse/itsolvers creating build/src.dragonfly-5.9-x86_64-2.7/pysparse/precon building extension "pysparse.sparse.spmatrix" sources building extension "pysparse.eigen.jdsym" sources building extension "pysparse.direct.umfpack" sources building extension "pysparse.direct.superlu" sources building extension "pysparse.itsolvers.krylov" sources building extension "pysparse.precon.precon" sources building data_files sources build_src: building npy-pkg config files running build_py creating build/lib.dragonfly-5.9-x86_64-2.7 creating build/lib.dragonfly-5.9-x86_64-2.7/pysparse copying pysparse/__init__.py -> build/lib.dragonfly-5.9-x86_64-2.7/pysparse copying pysparse/version.py -> build/lib.dragonfly-5.9-x86_64-2.7/pysparse copying pysparse/setup.py -> build/lib.dragonfly-5.9-x86_64-2.7/pysparse copying build/src.dragonfly-5.9-x86_64-2.7/pysparse/__config__.py -> build/lib.dragonfly-5.9-x86_64-2.7/pysparse creating build/lib.dragonfly-5.9-x86_64-2.7/pysparse/sparse copying pysparse/sparse/pysparseMatrix.py -> build/lib.dragonfly-5.9-x86_64-2.7/pysparse/sparse copying pysparse/sparse/setup.py -> build/lib.dragonfly-5.9-x86_64-2.7/pysparse/sparse copying pysparse/sparse/sparseMatrix.py -> build/lib.dragonfly-5.9-x86_64-2.7/pysparse/sparse copying pysparse/sparse/__init__.py -> build/lib.dragonfly-5.9-x86_64-2.7/pysparse/sparse copying build/src.dragonfly-5.9-x86_64-2.7/pysparse/sparse/__config__.py -> build/lib.dragonfly-5.9-x86_64-2.7/pysparse/sparse creating build/lib.dragonfly-5.9-x86_64-2.7/pysparse/eigen copying pysparse/eigen/setup.py -> build/lib.dragonfly-5.9-x86_64-2.7/pysparse/eigen copying pysparse/eigen/__init__.py -> build/lib.dragonfly-5.9-x86_64-2.7/pysparse/eigen copying build/src.dragonfly-5.9-x86_64-2.7/pysparse/eigen/__config__.py -> build/lib.dragonfly-5.9-x86_64-2.7/pysparse/eigen creating build/lib.dragonfly-5.9-x86_64-2.7/pysparse/direct copying pysparse/direct/directSolver.py -> build/lib.dragonfly-5.9-x86_64-2.7/pysparse/direct copying pysparse/direct/setup.py -> build/lib.dragonfly-5.9-x86_64-2.7/pysparse/direct copying pysparse/direct/pysparseSuperLU.py -> build/lib.dragonfly-5.9-x86_64-2.7/pysparse/direct copying pysparse/direct/pysparseUmfpack.py -> build/lib.dragonfly-5.9-x86_64-2.7/pysparse/direct copying pysparse/direct/__init__.py -> build/lib.dragonfly-5.9-x86_64-2.7/pysparse/direct copying build/src.dragonfly-5.9-x86_64-2.7/pysparse/direct/__config__.py -> build/lib.dragonfly-5.9-x86_64-2.7/pysparse/direct creating build/lib.dragonfly-5.9-x86_64-2.7/pysparse/itsolvers copying pysparse/itsolvers/__init__.py -> build/lib.dragonfly-5.9-x86_64-2.7/pysparse/itsolvers copying pysparse/itsolvers/setup.py -> build/lib.dragonfly-5.9-x86_64-2.7/pysparse/itsolvers copying pysparse/itsolvers/itsolvers_util.py -> build/lib.dragonfly-5.9-x86_64-2.7/pysparse/itsolvers copying build/src.dragonfly-5.9-x86_64-2.7/pysparse/itsolvers/__config__.py -> build/lib.dragonfly-5.9-x86_64-2.7/pysparse/itsolvers creating build/lib.dragonfly-5.9-x86_64-2.7/pysparse/precon copying pysparse/precon/setup.py -> build/lib.dragonfly-5.9-x86_64-2.7/pysparse/precon copying pysparse/precon/__init__.py -> build/lib.dragonfly-5.9-x86_64-2.7/pysparse/precon copying build/src.dragonfly-5.9-x86_64-2.7/pysparse/precon/__config__.py -> build/lib.dragonfly-5.9-x86_64-2.7/pysparse/precon creating build/lib.dragonfly-5.9-x86_64-2.7/pysparse/tools copying pysparse/tools/spmatrix_util.py -> build/lib.dragonfly-5.9-x86_64-2.7/pysparse/tools copying pysparse/tools/sptime.py -> build/lib.dragonfly-5.9-x86_64-2.7/pysparse/tools copying pysparse/tools/poisson.py -> build/lib.dragonfly-5.9-x86_64-2.7/pysparse/tools copying pysparse/tools/sparray.py -> build/lib.dragonfly-5.9-x86_64-2.7/pysparse/tools copying pysparse/tools/__init__.py -> build/lib.dragonfly-5.9-x86_64-2.7/pysparse/tools copying pysparse/tools/poisson_vec.py -> build/lib.dragonfly-5.9-x86_64-2.7/pysparse/tools creating build/lib.dragonfly-5.9-x86_64-2.7/pysparse/misc copying pysparse/misc/__init__.py -> build/lib.dragonfly-5.9-x86_64-2.7/pysparse/misc copying pysparse/misc/system.py -> build/lib.dragonfly-5.9-x86_64-2.7/pysparse/misc running build_ext customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpBaTveV/tmp creating /tmp/tmpBaTveV/tmp/tmpBaTveV compile options: '-MMD -MF /tmp/tmpBaTveV/file.c.d -c' cc: /tmp/tmpBaTveV/file.c customize UnixCCompiler using build_ext building 'pysparse.sparse.spmatrix' extension compiling C sources C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating build/temp.dragonfly-5.9-x86_64-2.7/pysparse creating build/temp.dragonfly-5.9-x86_64-2.7/pysparse/sparse creating build/temp.dragonfly-5.9-x86_64-2.7/pysparse/sparse/src compile options: '-DLENFUNC_OK=1 -Ipysparse/sparse/src -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/math/py-pysparse/pysparse-f8430bd/pysparse/include -I/usr/local/include/python2.7 -c' cc: pysparse/sparse/src/spmatrixmodule.c In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from pysparse/sparse/src/spmatrixmodule.c:9: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -shared -shared -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.9-x86_64-2.7/pysparse/sparse/src/spmatrixmodule.o -L/usr/local/lib -lpython2.7 -o build/lib.dragonfly-5.9-x86_64-2.7/pysparse/sparse/spmatrix.so /usr/local/bin/ld: /usr/lib/libc.so: .dynsym local symbol at index 8 (>= sh_info of 6) building 'pysparse.eigen.jdsym' extension compiling C sources C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating build/temp.dragonfly-5.9-x86_64-2.7/pysparse/eigen creating build/temp.dragonfly-5.9-x86_64-2.7/pysparse/eigen/src compile options: '-DHAVE_CBLAS -Ipysparse/eigen/src -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/math/py-pysparse/pysparse-f8430bd/pysparse/include -I/usr/local/include/python2.7 -c' cc: pysparse/eigen/src/jdsymmodule.c In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from pysparse/eigen/src/jdsymmodule.c:16: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -shared -shared -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.9-x86_64-2.7/pysparse/eigen/src/jdsymmodule.o -L/usr/local/lib -L/usr/local/lib/gcc8/ -L/usr/local/lib -lopenblas -lgfortran -lopenblas -lgfortran -lpython2.7 -o build/lib.dragonfly-5.9-x86_64-2.7/pysparse/eigen/jdsym.so /usr/local/bin/ld: /usr/lib/libc.so: .dynsym local symbol at index 8 (>= sh_info of 6) building 'pysparse.direct.umfpack' extension compiling C sources C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct creating build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack creating build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src creating build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/src creating build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/amd creating build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/amd/src compile options: '-DNBLAS=0 -DDINT=1 -Ipysparse/direct/src -Ipysparse/direct/umfpack/include -Ipysparse/direct/amd/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/math/py-pysparse/pysparse-f8430bd/pysparse/include -I/usr/local/include/python2.7 -c' cc: pysparse/direct/umfpack/src/umf_report_vector.c cc: pysparse/direct/umfpack/src/umf_report_perm.c cc: pysparse/direct/umfpack/src/umf_local_search.c cc: pysparse/direct/umfpack/src/umf_build_tuples.c cc: pysparse/direct/umfpack/src/umf_triplet_nomap_x.c cc: pysparse/direct/umfpack/src/umfpack_solve.ccc: pysparse/direct/amd/src/amd_defaults.c cc: pysparse/direct/umfpack/src/umf_mem_alloc_element.c cc: pysparse/direct/umfpack/src/umfpack_col_to_triplet.c cc: pysparse/direct/umfpack/src/umf_row_search.c cc: pysparse/direct/umfpack/src/umfpack_get_lunz.c cc: pysparse/direct/umfpack/src/umf_analyze.c cc: pysparse/direct/umfpack/src/umfpack_report_perm.c cc: pysparse/direct/umfpack/src/umfpack_scale.ccc: pysparse/direct/umfpack/src/umfpack_transpose.c cc: pysparse/direct/umfpack/src/umf_apply_order.c cc: pysparse/direct/umfpack/src/umf_singletons.c cc: pysparse/direct/umfpack/src/umfpack_save_numeric.c cc: pysparse/direct/umfpack/src/umfpack_wsolve.c cc: pysparse/direct/umfpack/src/umf_grow_front.c cc: pysparse/direct/umfpack/src/umf_solve.c cc: pysparse/direct/amd/src/amd_control.c cc: pysparse/direct/umfpack/src/umf_mem_alloc_head_block.c cc: pysparse/direct/umfpack/src/umf_lhsolve.c cc: pysparse/direct/umfpack/src/umf_2by2.c cc: pysparse/direct/umfpack/src/umf_symbolic_usage.c cc: pysparse/direct/umfpack/src/umfpack_report_triplet.c cc: pysparse/direct/umfpack/src/umf_uhsolve.c cc: pysparse/direct/umfpack/src/umf_realloc.c cc: pysparse/direct/umfpack/src/umfpack_report_vector.c cc: pysparse/direct/amd/src/amd_1.c cc: pysparse/direct/umfpack/src/umf_transpose.c cc: pysparse/direct/umfpack/src/umfpack_report_matrix.c cc: pysparse/direct/umfpack/src/umf_set_stats.c cc: pysparse/direct/umfpack/src/umf_usolve.c cc: pysparse/direct/umfpack/src/umfpack_load_numeric.c cc: pysparse/direct/umfpack/src/umfpack_save_symbolic.c cc: pysparse/direct/umfpack/src/umfpack_report_symbolic.c cc: pysparse/direct/umfpack/src/umf_malloc.c cc: pysparse/direct/umfpack/src/umf_triplet_map_x.c cc: pysparse/direct/umfpack/src/umf_mem_init_memoryspace.c cc: pysparse/direct/umfpack/src/umfpack_symbolic.c cc: pysparse/direct/umfpack/src/umfpack_load_symbolic.c cc: pysparse/direct/umfpack/src/umf_free.c cc: pysparse/direct/umfpack/src/umf_kernel_init.c cc: pysparse/direct/umfpack/src/umf_create_element.c cc: pysparse/direct/umfpack/src/umf_store_lu.c cc: pysparse/direct/umfpack/src/umfpack_get_symbolic.c cc: pysparse/direct/umfpack/src/umf_assemble.c cc: pysparse/direct/umfpack/src/umf_blas3_update.c cc: pysparse/direct/umfpack/src/umf_scale_column.c cc: pysparse/direct/umfpack/src/umf_is_permutation.c cc: pysparse/direct/umfpack/src/umfpack_defaults.c cc: pysparse/direct/amd/src/amd_postorder.c cc: pysparse/direct/umfpack/src/umf_colamd.c cc: pysparse/direct/umfpack/src/umfpack_triplet_to_col.c cc: pysparse/direct/umfpack/src/umfpack_report_numeric.c cc: pysparse/direct/umfpack/src/umfpack_free_symbolic.c cc: pysparse/direct/umfpack/src/umfpack_numeric.c cc: pysparse/direct/umfpack/src/umf_init_front.c cc: pysparse/direct/amd/src/amd_aat.c cc: pysparse/direct/umfpack/src/umf_kernel.c cc: pysparse/direct/amd/src/amd_info.c cc: pysparse/direct/umfpack/src/umf_mem_free_tail_block.c cc: pysparse/direct/amd/src/amd_dump.c cc: pysparse/direct/umfpack/src/umf_kernel_wrapup.c cc: pysparse/direct/umfpack/src/umf_utsolve.c cc: pysparse/direct/amd/src/amd_order.c cc: pysparse/direct/umfpack/src/umf_extend_front.c cc: pysparse/direct/umfpack/src/umf_triplet_nomap_nox.c cc: pysparse/direct/umfpack/src/umf_get_memory.c cc: pysparse/direct/umfpack/src/umf_mem_alloc_tail_block.c cc: pysparse/direct/umfpack/src/umfpack_get_numeric.c cc: pysparse/direct/umfpack/src/umf_garbage_collection.c cc: pysparse/direct/umfpack/src/umf_scale.c cc: pysparse/direct/umfpack/src/umfpack_free_numeric.c cc: pysparse/direct/amd/src/amd_2.c cc: pysparse/direct/umfpack/src/umf_dump.c cc: pysparse/direct/umfpack/src/umfpack_report_info.c cc: pysparse/direct/src/umfpackmodule.c cc: pysparse/direct/umfpack/src/umf_fsize.c In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from pysparse/direct/src/umfpackmodule.c:64: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc: pysparse/direct/umfpack/src/umfpack_qsymbolic.c cc: pysparse/direct/umfpack/src/umfpack_timer.c cc: pysparse/direct/umfpack/src/umf_valid_symbolic.c cc: pysparse/direct/umfpack/src/umf_lsolve.c cc: pysparse/direct/umfpack/src/umf_ltsolve.c cc: pysparse/direct/amd/src/amd_valid.c cc: pysparse/direct/umfpack/src/umf_assemble_fixq.c cc: pysparse/direct/umfpack/src/umfpack_report_control.c cc: pysparse/direct/umfpack/src/umf_valid_numeric.c cc: pysparse/direct/umfpack/src/umfpack_report_status.c cc: pysparse/direct/umfpack/src/umf_triplet_map_nox.c cc: pysparse/direct/umfpack/src/umf_tuple_lengths.c cc: pysparse/direct/umfpack/src/umf_start_front.c cc: pysparse/direct/umfpack/src/umfpack_tictoc.c cc: pysparse/direct/amd/src/amd_post_tree.c cc -shared -shared -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_report_perm.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umf_build_tuples.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umf_garbage_collection.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umf_local_search.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umf_valid_numeric.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_save_numeric.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umf_scale_column.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_free_symbolic.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_report_symbolic.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umf_assemble_fixq.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umf_blas3_update.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_transpose.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_free_numeric.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_load_numeric.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umf_lsolve.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_report_status.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_report_numeric.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_load_symbolic.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umf_analyze.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umf_usolve.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umf_transpose.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umf_create_element.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_numeric.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umf_free.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umf_grow_front.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umf_lhsolve.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umf_mem_alloc_head_block.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_report_control.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umf_triplet_nomap_nox.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umf_kernel.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umf_get_memory.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umf_malloc.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_report_triplet.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umf_mem_free_tail_block.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umf_valid_symbolic.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_tictoc.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_report_vector.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umf_start_front.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umf_colamd.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umf_kernel_wrapup.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_get_numeric.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_scale.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umf_mem_alloc_element.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_wsolve.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umf_tuple_lengths.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umf_triplet_nomap_x.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umf_uhsolve.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_timer.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_symbolic.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umf_row_search.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umf_solve.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umf_assemble.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_get_symbolic.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umf_mem_alloc_tail_block.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umf_set_stats.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_solve.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umf_extend_front.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umf_triplet_map_x.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umf_init_front.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_report_info.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_report_matrix.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_triplet_to_col.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umf_symbolic_usage.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umf_realloc.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umf_scale.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umf_dump.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_defaults.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umf_report_perm.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umf_mem_init_memoryspace.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umf_is_permutation.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umf_2by2.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umf_singletons.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_qsymbolic.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_save_symbolic.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umf_ltsolve.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umf_kernel_init.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umf_utsolve.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_col_to_triplet.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umf_report_vector.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umf_apply_order.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umf_store_lu.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umf_fsize.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umf_triplet_map_nox.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_get_lunz.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/src/umfpackmodule.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/amd/src/amd_order.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/amd/src/amd_aat.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/amd/src/amd_defaults.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/amd/src/amd_2.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/amd/src/amd_valid.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/amd/src/amd_dump.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/amd/src/amd_postorder.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/amd/src/amd_info.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/amd/src/amd_1.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/amd/src/amd_post_tree.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/amd/src/amd_control.o -L/usr/local/lib -lpython2.7 -o build/lib.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack.so /usr/local/bin/ld: /usr/lib/libc.so: .dynsym local symbol at index 8 (>= sh_info of 6) building 'pysparse.direct.superlu' extension compiling C sources C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/superlu creating build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/superlu/src compile options: '-DUSE_VENDOR_BLAS=0 -Ipysparse/direct/src -Ipysparse/direct/superlu/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/math/py-pysparse/pysparse-f8430bd/pysparse/include -I/usr/local/include/python2.7 -c' cc: pysparse/direct/superlu/src/dlacon.c cc: pysparse/direct/superlu/src/dcolumn_bmod.c cc: pysparse/direct/superlu/src/dpivotL.c cc: pysparse/direct/superlu/src/dutil.ccc: pysparse/direct/superlu/src/scomplex.c cc: pysparse/direct/superlu/src/superlu_timer.c cc: pysparse/direct/superlu/src/dsp_blas3.c cc: pysparse/direct/superlu/src/relax_snode.c pysparse/direct/superlu/src/dcolumn_bmod.c: In function 'dcolumn_bmod': pysparse/direct/superlu/src/dcolumn_bmod.c:217:3: warning: implicit declaration of function 'dtrsv_'; did you mean 'strstr'? [-Wimplicit-function-declaration] dtrsv_( "L", "N", "U", &segsze, &lusup[luptr], ^~~~~~ strstr pysparse/direct/superlu/src/dcolumn_bmod.c:228:3: warning: implicit declaration of function 'dgemv_'; did you mean 'dgssvx'? [-Wimplicit-function-declaration] dgemv_( "N", &nrow, &segsze, &alpha, &lusup[luptr], ^~~~~~ dgssvx pysparse/direct/superlu/src/dutil.c:470:1: warning: return type defaults to 'int' [-Wimplicit-int] print_double_vec(char *what, int n, double *vec) ^~~~~~~~~~~~~~~~ cc: pysparse/direct/superlu/src/dsp_blas2.c cc: pysparse/direct/superlu/src/dlaqgs.c cc: pysparse/direct/superlu/src/dgssv.c pysparse/direct/superlu/src/dsp_blas2.c: In function 'sp_dtrsv': pysparse/direct/superlu/src/dsp_blas2.c:154:7: warning: implicit declaration of function 'dtrsv_'; did you mean 'strstr'? [-Wimplicit-function-declaration] dtrsv_("L", "N", "U", &nsupc, &Lval[luptr], &nsupr, ^~~~~~ strstr pysparse/direct/superlu/src/dsp_blas2.c:157:7: warning: implicit declaration of function 'dgemv_'; did you mean 'daemon'? [-Wimplicit-function-declaration] dgemv_("N", &nrow, &nsupc, &alpha, &Lval[luptr+nsupc], ^~~~~~ daemon cc: pysparse/direct/superlu/src/dgssvx.c cc: pysparse/direct/superlu/src/memory.c cc: pysparse/direct/superlu/src/icmax1.ccc: pysparse/direct/superlu/src/dgsequ.c cc: pysparse/direct/superlu/src/get_perm_c.c cc: pysparse/direct/superlu/src/dcolumn_dfs.c cc: pysparse/direct/superlu/src/dgscon.c cc: pysparse/direct/superlu/src/dpanel_dfs.c cc: pysparse/direct/superlu/src/sp_ienv.c pysparse/direct/superlu/src/sp_ienv.c: In function 'sp_ienv': pysparse/direct/superlu/src/sp_ienv.c:57:5: warning: implicit declaration of function 'xerbla_' [-Wimplicit-function-declaration] xerbla_("sp_ienv", &i); ^~~~~~~ cc: pysparse/direct/superlu/src/colamd.c cc: pysparse/direct/superlu/src/lsame.c cc: pysparse/direct/superlu/src/dpruneL.c cc: pysparse/direct/src/superlumodule.c cc: pysparse/direct/superlu/src/dsnode_dfs.c In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from pysparse/direct/src/superlumodule.c:5: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ In file included from pysparse/direct/src/superlumodule.c:9: pysparse/direct/superlu/include/util.h:41: warning: "FALSE" redefined #define FALSE 0 In file included from pysparse/direct/src/superlumodule.c:6: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/noprefix.h:151: note: this is the location of the previous definition #define FALSE NPY_FALSE In file included from pysparse/direct/src/superlumodule.c:9: pysparse/direct/superlu/include/util.h:42: warning: "TRUE" redefined #define TRUE 1 In file included from pysparse/direct/src/superlumodule.c:6: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/noprefix.h:147: note: this is the location of the previous definition #define TRUE NPY_TRUE cc: pysparse/direct/superlu/src/sp_preorder.c cc: pysparse/direct/superlu/src/dreadhb.c cc: pysparse/direct/superlu/src/dlangs.ccc: pysparse/direct/superlu/src/dlamch.c cc: pysparse/direct/superlu/src/dmemory.c pysparse/direct/superlu/src/sp_preorder.c:144:1: warning: return type defaults to 'int' [-Wimplicit-int] check_perm(char *what, int n, int *perm) ^~~~~~~~~~ cc: pysparse/direct/superlu/src/izmax1.c pysparse/direct/superlu/src/izmax1.c: In function 'izmax1_': pysparse/direct/superlu/src/izmax1.c:70:29: warning: implicit declaration of function 'abs' [-Wimplicit-function-declaration] smax = (d__1 = CX(1).r, abs(d__1)); ^~~ cc: pysparse/direct/superlu/src/dpanel_bmod.c pysparse/direct/superlu/src/dlamch.c: In function 'dlamch_': pysparse/direct/superlu/src/dlamch.c:100:9: warning: implicit declaration of function 'lsame_' [-Wimplicit-function-declaration] if (lsame_(cmach, "E")) { ^~~~~~ cc: pysparse/direct/superlu/src/dzsum1.c cc: pysparse/direct/superlu/src/dpivotgrowth.c cc: pysparse/direct/superlu/src/dsnode_bmod.c pysparse/direct/superlu/src/dpanel_bmod.c: In function 'dpanel_bmod': pysparse/direct/superlu/src/dpanel_bmod.c:217:7: warning: implicit declaration of function 'dtrsv_'; did you mean 'strstr'? [-Wimplicit-function-declaration] dtrsv_( "L", "N", "U", &segsze, &lusup[luptr], ^~~~~~ strstr pysparse/direct/superlu/src/dpanel_bmod.c:264:7: warning: implicit declaration of function 'dgemv_'; did you mean 'dgssvx'? [-Wimplicit-function-declaration] dgemv_("N", &block_nrow, &segsze, &alpha, &lusup[luptr1], ^~~~~~ dgssvx pysparse/direct/superlu/src/dsnode_bmod.c: In function 'dsnode_bmod': pysparse/direct/superlu/src/dsnode_bmod.c:97:2: warning: implicit declaration of function 'dtrsv_'; did you mean 'strstr'? [-Wimplicit-function-declaration] dtrsv_( "L", "N", "U", &nsupc, &lusup[luptr], &nsupr, ^~~~~~ strstr pysparse/direct/superlu/src/dsnode_bmod.c:99:2: warning: implicit declaration of function 'dgemv_'; did you mean 'daemon'? [-Wimplicit-function-declaration] dgemv_( "N", &nrow, &nsupc, &alpha, &lusup[luptr+nsupc], &nsupr, ^~~~~~ daemon cc: pysparse/direct/superlu/src/dgsrfs.c cc: pysparse/direct/superlu/src/util.c cc: pysparse/direct/superlu/src/xerbla.c cc: pysparse/direct/superlu/src/dgstrs.c cc: pysparse/direct/superlu/src/dcomplex.c pysparse/direct/superlu/src/xerbla.c: In function 'xerbla_': pysparse/direct/superlu/src/xerbla.c:33:5: warning: implicit declaration of function 'printf' [-Wimplicit-function-declaration] printf("** On entry to %6s, parameter number %2d had an illegal value\n", ^~~~~~ pysparse/direct/superlu/src/xerbla.c:33:5: warning: incompatible implicit declaration of built-in function 'printf' pysparse/direct/superlu/src/xerbla.c:33:5: note: include '' or provide a declaration of 'printf' pysparse/direct/superlu/src/xerbla.c:1:1: +#include /* Subroutine */ int xerbla_(char *srname, int *info) pysparse/direct/superlu/src/xerbla.c:33:5: printf("** On entry to %6s, parameter number %2d had an illegal value\n", ^~~~~~ pysparse/direct/superlu/src/dgstrs.c: In function 'dgstrs': pysparse/direct/superlu/src/dgstrs.c:183:3: warning: implicit declaration of function 'dtrsm_'; did you mean 'strstr'? [-Wimplicit-function-declaration] dtrsm_("L", "L", "N", "U", &nsupc, &nrhs, &alpha, ^~~~~~ strstr pysparse/direct/superlu/src/dgstrs.c:186:3: warning: implicit declaration of function 'dgemm_'; did you mean 'daemon'? [-Wimplicit-function-declaration] dgemm_( "N", "N", &nrow, &nrhs, &nsupc, &alpha, ^~~~~~ daemon cc: pysparse/direct/superlu/src/sp_coletree.c cc: pysparse/direct/superlu/src/dcopy_to_ucol.c cc: pysparse/direct/superlu/src/dgstrf.c cc: pysparse/direct/superlu/src/mmd.c cc -shared -shared -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/superlu/src/mmd.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/superlu/src/dreadhb.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/superlu/src/dzsum1.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/superlu/src/dcolumn_dfs.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/superlu/src/memory.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/superlu/src/dcopy_to_ucol.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/superlu/src/dpivotL.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/superlu/src/dgsequ.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/superlu/src/dsnode_bmod.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/superlu/src/dpanel_dfs.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/superlu/src/dpivotgrowth.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/superlu/src/dcolumn_bmod.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/superlu/src/izmax1.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/superlu/src/dpanel_bmod.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/superlu/src/lsame.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/superlu/src/colamd.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/superlu/src/dsp_blas3.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/superlu/src/xerbla.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/superlu/src/dgsrfs.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/superlu/src/relax_snode.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/superlu/src/dgssvx.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/superlu/src/dgscon.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/superlu/src/dgssv.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/superlu/src/icmax1.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/superlu/src/sp_coletree.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/superlu/src/sp_ienv.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/superlu/src/dcomplex.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/superlu/src/util.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/superlu/src/scomplex.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/superlu/src/superlu_timer.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/superlu/src/dlamch.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/superlu/src/get_perm_c.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/superlu/src/dsnode_dfs.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/superlu/src/dlaqgs.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/superlu/src/dlacon.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/superlu/src/dmemory.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/superlu/src/dpruneL.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/superlu/src/dsp_blas2.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/superlu/src/dgstrf.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/superlu/src/dgstrs.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/superlu/src/dutil.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/superlu/src/dlangs.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/superlu/src/sp_preorder.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/direct/src/superlumodule.o -L/usr/local/lib -lpython2.7 -o build/lib.dragonfly-5.9-x86_64-2.7/pysparse/direct/superlu.so /usr/local/bin/ld: /usr/lib/libc.so: .dynsym local symbol at index 8 (>= sh_info of 6) building 'pysparse.itsolvers.krylov' extension compiling C sources C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating build/temp.dragonfly-5.9-x86_64-2.7/pysparse/itsolvers creating build/temp.dragonfly-5.9-x86_64-2.7/pysparse/itsolvers/src compile options: '-Ipysparse/itsolvers/src -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/math/py-pysparse/pysparse-f8430bd/pysparse/include -I/usr/local/include/python2.7 -c' cc: pysparse/itsolvers/src/pcg.c cc: pysparse/itsolvers/src/bicgstab.c cc: pysparse/itsolvers/src/gmres.ccc: pysparse/itsolvers/src/minres.ccc: pysparse/itsolvers/src/cgs.c cc: pysparse/itsolvers/src/itsolversmodule.ccc: pysparse/itsolvers/src/qmrs.c In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from pysparse/itsolvers/src/itsolversmodule.c:9: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -shared -shared -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.9-x86_64-2.7/pysparse/itsolvers/src/itsolversmodule.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/itsolvers/src/bicgstab.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/itsolvers/src/cgs.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/itsolvers/src/gmres.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/itsolvers/src/minres.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/itsolvers/src/pcg.o build/temp.dragonfly-5.9-x86_64-2.7/pysparse/itsolvers/src/qmrs.o -L/usr/local/lib -lpython2.7 -o build/lib.dragonfly-5.9-x86_64-2.7/pysparse/itsolvers/krylov.so /usr/local/bin/ld: /usr/lib/libc.so: .dynsym local symbol at index 8 (>= sh_info of 6) building 'pysparse.precon.precon' extension compiling C sources C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating build/temp.dragonfly-5.9-x86_64-2.7/pysparse/precon creating build/temp.dragonfly-5.9-x86_64-2.7/pysparse/precon/src compile options: '-Ipysparse/precon/src -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/math/py-pysparse/pysparse-f8430bd/pysparse/include -I/usr/local/include/python2.7 -c' cc: pysparse/precon/src/preconmodule.c In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from pysparse/precon/src/preconmodule.c:4: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -shared -shared -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.9-x86_64-2.7/pysparse/precon/src/preconmodule.o -L/usr/local/lib -lpython2.7 -o build/lib.dragonfly-5.9-x86_64-2.7/pysparse/precon/precon.so /usr/local/bin/ld: /usr/lib/libc.so: .dynsym local symbol at index 8 (>= sh_info of 6) SUCCEEDED 00:00:16 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> py27-pysparse-1.3_10 depends on package: py27-numpy>=1.2,1 - found ===> py27-pysparse-1.3_10 depends on executable: gfortran8 - found ===> py27-pysparse-1.3_10 depends on package: py27-setuptools>0 - found ===> py27-pysparse-1.3_10 depends on file: /usr/local/bin/python2.7 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for py27-pysparse-1.3_10 ===> py27-pysparse-1.3_10 depends on package: py27-numpy>=1.2,1 - found ===> py27-pysparse-1.3_10 depends on executable: gfortran8 - found ===> py27-pysparse-1.3_10 depends on package: py27-setuptools>0 - found ===> py27-pysparse-1.3_10 depends on file: /usr/local/bin/python2.7 - found ===> Generating temporary packing list blas_opt_info: blas_mkl_info: customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpffNpoE/tmp creating /tmp/tmpffNpoE/tmp/tmpffNpoE compile options: '-MMD -MF /tmp/tmpffNpoE/file.c.d -c' cc: /tmp/tmpffNpoE/file.c libraries mkl_rt not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../../'] NOT AVAILABLE blis_info: customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmp2mQ_ud/tmp creating /tmp/tmp2mQ_ud/tmp/tmp2mQ_ud compile options: '-MMD -MF /tmp/tmp2mQ_ud/file.c.d -c' cc: /tmp/tmp2mQ_ud/file.c libraries blis not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../../'] NOT AVAILABLE atlas_3_10_blas_threads_info: Setting PTATLAS=ATLAS customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpK4vaxg/tmp creating /tmp/tmpK4vaxg/tmp/tmpK4vaxg compile options: '-MMD -MF /tmp/tmpK4vaxg/file.c.d -c' cc: /tmp/tmpK4vaxg/file.c libraries tatlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../../'] NOT AVAILABLE atlas_3_10_blas_info: customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpVfBBi5/tmp creating /tmp/tmpVfBBi5/tmp/tmpVfBBi5 compile options: '-MMD -MF /tmp/tmpVfBBi5/file.c.d -c' cc: /tmp/tmpVfBBi5/file.c libraries satlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../../'] NOT AVAILABLE atlas_blas_threads_info: Setting PTATLAS=ATLAS customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmp4CA7ph/tmp creating /tmp/tmp4CA7ph/tmp/tmp4CA7ph compile options: '-MMD -MF /tmp/tmp4CA7ph/file.c.d -c' cc: /tmp/tmp4CA7ph/file.c libraries ptf77blas,ptcblas,atlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../../'] NOT AVAILABLE atlas_blas_info: customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpulOBzl/tmp creating /tmp/tmpulOBzl/tmp/tmpulOBzl compile options: '-MMD -MF /tmp/tmpulOBzl/file.c.d -c' cc: /tmp/tmpulOBzl/file.c libraries f77blas,cblas,atlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../../'] NOT AVAILABLE accelerate_info: NOT AVAILABLE /usr/local/lib/python2.7/site-packages/numpy/distutils/system_info.py:641: UserWarning: Atlas (http://math-atlas.sourceforge.net/) libraries not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [atlas]) or by setting the ATLAS environment variable. self.calc_info() blas_info: customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmp6ySOfb/tmp creating /tmp/tmp6ySOfb/tmp/tmp6ySOfb compile options: '-MMD -MF /tmp/tmp6ySOfb/file.c.d -c' cc: /tmp/tmp6ySOfb/file.c libraries blas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../../'] NOT AVAILABLE /usr/local/lib/python2.7/site-packages/numpy/distutils/system_info.py:641: UserWarning: Blas (http://www.netlib.org/blas/) libraries not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [blas]) or by setting the BLAS environment variable. self.calc_info() blas_src_info: /usr/local/lib/python2.7/site-packages/numpy/distutils/system_info.py:1951: UserWarning: Specified path /usr/local/src is invalid. pre_dirs = system_info.get_paths(self, section, key) NOT AVAILABLE /usr/local/lib/python2.7/site-packages/numpy/distutils/system_info.py:641: UserWarning: Blas (http://www.netlib.org/blas/) sources not found. Directories to search for the sources can be specified in the numpy/distutils/site.cfg file (section [blas_src]) or by setting the BLAS_SRC environment variable. self.calc_info() NOT AVAILABLE No blas info found Sparse:: Using BLAS info: {} Using dflt_lib_dirs = [] Using dflt_libs = [] No blas info found Eigen:: Using BLAS info: {} lapack_opt_info: lapack_mkl_info: customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpPWQTPA/tmp creating /tmp/tmpPWQTPA/tmp/tmpPWQTPA compile options: '-MMD -MF /tmp/tmpPWQTPA/file.c.d -c' cc: /tmp/tmpPWQTPA/file.c libraries mkl_rt not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../../'] NOT AVAILABLE openblas_lapack_info: customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpZNqyWK/tmp creating /tmp/tmpZNqyWK/tmp/tmpZNqyWK compile options: '-MMD -MF /tmp/tmpZNqyWK/file.c.d -c' cc: /tmp/tmpZNqyWK/file.c customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpVWHlmU/tmp creating /tmp/tmpVWHlmU/tmp/tmpVWHlmU compile options: '-MMD -MF /tmp/tmpVWHlmU/file.c.d -c' cc: /tmp/tmpVWHlmU/file.c customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpKTZ0Mo/tmp creating /tmp/tmpKTZ0Mo/tmp/tmpKTZ0Mo compile options: '-MMD -MF /tmp/tmpKTZ0Mo/file.c.d -c' cc: /tmp/tmpKTZ0Mo/file.c C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmp5D4TuD/tmp creating /tmp/tmp5D4TuD/tmp/tmp5D4TuD compile options: '-c' cc: /tmp/tmp5D4TuD/source.c cc /tmp/tmp5D4TuD/tmp/tmp5D4TuD/source.o -L/usr/local/lib -L/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../../ -lopenblas -lgfortran -o /tmp/tmp5D4TuD/a.out customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpChpV2e/tmp creating /tmp/tmpChpV2e/tmp/tmpChpV2e compile options: '-MMD -MF /tmp/tmpChpV2e/file.c.d -c' cc: /tmp/tmpChpV2e/file.c customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmp50Ozyg/tmp creating /tmp/tmp50Ozyg/tmp/tmp50Ozyg compile options: '-MMD -MF /tmp/tmp50Ozyg/file.c.d -c' cc: /tmp/tmp50Ozyg/file.c FOUND: libraries = ['openblas', 'gfortran', 'openblas', 'gfortran'] library_dirs = ['/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../../'] language = c define_macros = [('HAVE_CBLAS', None)] FOUND: libraries = ['openblas', 'gfortran', 'openblas', 'gfortran'] library_dirs = ['/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../../'] language = c define_macros = [('HAVE_CBLAS', None)] Eigen:: Using LAPACK info: {'libraries': ['openblas', 'gfortran', 'openblas', 'gfortran'], 'library_dirs': ['/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../../'], 'define_macros': [('HAVE_CBLAS', None)], 'language': 'c'} No blas info found Direct:: Using BLAS info: {} Using default UMFPACK and AMD If you do not like this, edit the [UMFPACK] and [AMD] sections of site.cfg Using default SuperLU. If you do not like this, edit the [SuperLU] section of site.cfg No blas info found No blas info found /usr/local/lib/python2.7/site-packages/setuptools/dist.py:476: UserWarning: Normalizing '1.3-dev' to '1.3.dev0' normalized_version, running install running build running config_cc unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src build_src building py_modules sources building extension "pysparse.sparse.spmatrix" sources building extension "pysparse.eigen.jdsym" sources building extension "pysparse.direct.umfpack" sources building extension "pysparse.direct.superlu" sources building extension "pysparse.itsolvers.krylov" sources building extension "pysparse.precon.precon" sources building data_files sources build_src: building npy-pkg config files running build_py copying pysparse/version.py -> build/lib.dragonfly-5.9-x86_64-2.7/pysparse copying build/src.dragonfly-5.9-x86_64-2.7/pysparse/__config__.py -> build/lib.dragonfly-5.9-x86_64-2.7/pysparse copying build/src.dragonfly-5.9-x86_64-2.7/pysparse/sparse/__config__.py -> build/lib.dragonfly-5.9-x86_64-2.7/pysparse/sparse copying build/src.dragonfly-5.9-x86_64-2.7/pysparse/eigen/__config__.py -> build/lib.dragonfly-5.9-x86_64-2.7/pysparse/eigen copying build/src.dragonfly-5.9-x86_64-2.7/pysparse/direct/__config__.py -> build/lib.dragonfly-5.9-x86_64-2.7/pysparse/direct copying build/src.dragonfly-5.9-x86_64-2.7/pysparse/itsolvers/__config__.py -> build/lib.dragonfly-5.9-x86_64-2.7/pysparse/itsolvers copying build/src.dragonfly-5.9-x86_64-2.7/pysparse/precon/__config__.py -> build/lib.dragonfly-5.9-x86_64-2.7/pysparse/precon running build_ext customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmp5bUKgx/tmp creating /tmp/tmp5bUKgx/tmp/tmp5bUKgx compile options: '-MMD -MF /tmp/tmp5bUKgx/file.c.d -c' cc: /tmp/tmp5bUKgx/file.c customize UnixCCompiler using build_ext running install_lib creating /construction/math/py-pysparse/stage/usr/local/lib/python2.7 creating /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages creating /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse creating /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/misc copying build/lib.dragonfly-5.9-x86_64-2.7/pysparse/misc/__init__.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/misc copying build/lib.dragonfly-5.9-x86_64-2.7/pysparse/misc/system.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/misc copying build/lib.dragonfly-5.9-x86_64-2.7/pysparse/__config__.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse creating /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/direct copying build/lib.dragonfly-5.9-x86_64-2.7/pysparse/direct/umfpack.so -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/direct copying build/lib.dragonfly-5.9-x86_64-2.7/pysparse/direct/setup.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/direct copying build/lib.dragonfly-5.9-x86_64-2.7/pysparse/direct/pysparseUmfpack.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/direct copying build/lib.dragonfly-5.9-x86_64-2.7/pysparse/direct/__init__.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/direct copying build/lib.dragonfly-5.9-x86_64-2.7/pysparse/direct/pysparseSuperLU.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/direct copying build/lib.dragonfly-5.9-x86_64-2.7/pysparse/direct/__config__.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/direct copying build/lib.dragonfly-5.9-x86_64-2.7/pysparse/direct/directSolver.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/direct copying build/lib.dragonfly-5.9-x86_64-2.7/pysparse/direct/superlu.so -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/direct creating /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/itsolvers copying build/lib.dragonfly-5.9-x86_64-2.7/pysparse/itsolvers/__config__.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/itsolvers copying build/lib.dragonfly-5.9-x86_64-2.7/pysparse/itsolvers/itsolvers_util.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/itsolvers copying build/lib.dragonfly-5.9-x86_64-2.7/pysparse/itsolvers/setup.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/itsolvers copying build/lib.dragonfly-5.9-x86_64-2.7/pysparse/itsolvers/__init__.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/itsolvers copying build/lib.dragonfly-5.9-x86_64-2.7/pysparse/itsolvers/krylov.so -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/itsolvers creating /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/tools copying build/lib.dragonfly-5.9-x86_64-2.7/pysparse/tools/poisson.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/tools copying build/lib.dragonfly-5.9-x86_64-2.7/pysparse/tools/poisson_vec.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/tools copying build/lib.dragonfly-5.9-x86_64-2.7/pysparse/tools/sptime.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/tools copying build/lib.dragonfly-5.9-x86_64-2.7/pysparse/tools/__init__.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/tools copying build/lib.dragonfly-5.9-x86_64-2.7/pysparse/tools/spmatrix_util.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/tools copying build/lib.dragonfly-5.9-x86_64-2.7/pysparse/tools/sparray.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/tools copying build/lib.dragonfly-5.9-x86_64-2.7/pysparse/setup.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse copying build/lib.dragonfly-5.9-x86_64-2.7/pysparse/__init__.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse creating /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/sparse copying build/lib.dragonfly-5.9-x86_64-2.7/pysparse/sparse/__config__.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/sparse copying build/lib.dragonfly-5.9-x86_64-2.7/pysparse/sparse/pysparseMatrix.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/sparse copying build/lib.dragonfly-5.9-x86_64-2.7/pysparse/sparse/__init__.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/sparse copying build/lib.dragonfly-5.9-x86_64-2.7/pysparse/sparse/setup.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/sparse copying build/lib.dragonfly-5.9-x86_64-2.7/pysparse/sparse/sparseMatrix.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/sparse copying build/lib.dragonfly-5.9-x86_64-2.7/pysparse/sparse/spmatrix.so -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/sparse creating /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/eigen copying build/lib.dragonfly-5.9-x86_64-2.7/pysparse/eigen/jdsym.so -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/eigen copying build/lib.dragonfly-5.9-x86_64-2.7/pysparse/eigen/setup.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/eigen copying build/lib.dragonfly-5.9-x86_64-2.7/pysparse/eigen/__config__.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/eigen copying build/lib.dragonfly-5.9-x86_64-2.7/pysparse/eigen/__init__.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/eigen creating /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/precon copying build/lib.dragonfly-5.9-x86_64-2.7/pysparse/precon/__config__.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/precon copying build/lib.dragonfly-5.9-x86_64-2.7/pysparse/precon/__init__.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/precon copying build/lib.dragonfly-5.9-x86_64-2.7/pysparse/precon/setup.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/precon copying build/lib.dragonfly-5.9-x86_64-2.7/pysparse/precon/precon.so -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/precon copying build/lib.dragonfly-5.9-x86_64-2.7/pysparse/version.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/misc/__init__.py to __init__.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/misc/system.py to system.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/__config__.py to __config__.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/direct/setup.py to setup.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/direct/pysparseUmfpack.py to pysparseUmfpack.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/direct/__init__.py to __init__.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/direct/pysparseSuperLU.py to pysparseSuperLU.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/direct/__config__.py to __config__.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/direct/directSolver.py to directSolver.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/itsolvers/__config__.py to __config__.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/itsolvers/itsolvers_util.py to itsolvers_util.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/itsolvers/setup.py to setup.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/itsolvers/__init__.py to __init__.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/tools/poisson.py to poisson.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/tools/poisson_vec.py to poisson_vec.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/tools/sptime.py to sptime.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/tools/__init__.py to __init__.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/tools/spmatrix_util.py to spmatrix_util.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/tools/sparray.py to sparray.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/setup.py to setup.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/__init__.py to __init__.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/sparse/__config__.py to __config__.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/sparse/pysparseMatrix.py to pysparseMatrix.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/sparse/__init__.py to __init__.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/sparse/setup.py to setup.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/sparse/sparseMatrix.py to sparseMatrix.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/eigen/setup.py to setup.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/eigen/__config__.py to __config__.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/eigen/__init__.py to __init__.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/precon/__config__.py to __config__.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/precon/__init__.py to __init__.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/precon/setup.py to setup.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/version.py to version.pyc writing byte-compilation script '/tmp/tmpxuhlLR.py' /usr/local/bin/python2.7 -O /tmp/tmpxuhlLR.py removing /tmp/tmpxuhlLR.py running install_data creating /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/include copying /construction/math/py-pysparse/pysparse-f8430bd/pysparse/include/lapack.h -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/include/ copying /construction/math/py-pysparse/pysparse-f8430bd/pysparse/include/bicgstab.h -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/include/ copying /construction/math/py-pysparse/pysparse-f8430bd/pysparse/include/minres.h -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/include/ copying /construction/math/py-pysparse/pysparse-f8430bd/pysparse/include/cgs.h -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/include/ copying /construction/math/py-pysparse/pysparse-f8430bd/pysparse/include/blas.h -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/include/ copying /construction/math/py-pysparse/pysparse-f8430bd/pysparse/include/dsp_defs.h -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/include/ copying /construction/math/py-pysparse/pysparse-f8430bd/pysparse/include/ll_mat.h -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/include/ copying /construction/math/py-pysparse/pysparse-f8430bd/pysparse/include/spmatrix.h -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/include/ copying /construction/math/py-pysparse/pysparse-f8430bd/pysparse/include/qmrs.h -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/include/ copying /construction/math/py-pysparse/pysparse-f8430bd/pysparse/include/util.h -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/include/ copying /construction/math/py-pysparse/pysparse-f8430bd/pysparse/include/pcg.h -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/include/ copying /construction/math/py-pysparse/pysparse-f8430bd/pysparse/include/spmatrix_api.h -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/include/ copying /construction/math/py-pysparse/pysparse-f8430bd/pysparse/include/gmres.h -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/include/ copying /construction/math/py-pysparse/pysparse-f8430bd/pysparse/include/fortran.h -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/include/ copying /construction/math/py-pysparse/pysparse-f8430bd/pysparse/include/sss_mat.h -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/include/ copying /construction/math/py-pysparse/pysparse-f8430bd/pysparse/include/mmio.h -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/include/ copying /construction/math/py-pysparse/pysparse-f8430bd/pysparse/include/csr_mat.h -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/include/ running install_clib customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpkeWCfL/tmp creating /tmp/tmpkeWCfL/tmp/tmpkeWCfL compile options: '-MMD -MF /tmp/tmpkeWCfL/file.c.d -c' cc: /tmp/tmpkeWCfL/file.c running install_egg_info running egg_info creating pysparse.egg-info writing requirements to pysparse.egg-info/requires.txt writing pysparse.egg-info/PKG-INFO writing top-level names to pysparse.egg-info/top_level.txt writing dependency_links to pysparse.egg-info/dependency_links.txt writing manifest file 'pysparse.egg-info/SOURCES.txt' reading manifest file 'pysparse.egg-info/SOURCES.txt' writing manifest file 'pysparse.egg-info/SOURCES.txt' Copying pysparse.egg-info to /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse-1.3.dev0-py2.7.egg-info running install_scripts writing list of installed files to '/construction/math/py-pysparse/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: 'lib/python2.7/site-packages/pysparse/direct/umfpack.so' is not stripped consider trying INSTALL_TARGET=install-strip or using ${STRIP_CMD} Warning: 'lib/python2.7/site-packages/pysparse/direct/superlu.so' is not stripped consider trying INSTALL_TARGET=install-strip or using ${STRIP_CMD} Warning: 'lib/python2.7/site-packages/pysparse/itsolvers/krylov.so' is not stripped consider trying INSTALL_TARGET=install-strip or using ${STRIP_CMD} Warning: 'lib/python2.7/site-packages/pysparse/eigen/jdsym.so' is not stripped consider trying INSTALL_TARGET=install-strip or using ${STRIP_CMD} Warning: 'lib/python2.7/site-packages/pysparse/sparse/spmatrix.so' is not stripped consider trying INSTALL_TARGET=install-strip or using ${STRIP_CMD} Warning: 'lib/python2.7/site-packages/pysparse/precon/precon.so' is not stripped consider trying INSTALL_TARGET=install-strip or using ${STRIP_CMD} Error: /usr/local/lib/python2.7/site-packages/pysparse/direct/superlu.so is linked to /usr/local/lib/libintl.so.8 from devel/gettext-runtime but it is not declared as a dependency Warning: you need USES+=gettext-runtime Error: /usr/local/lib/python2.7/site-packages/pysparse/eigen/jdsym.so is linked to /usr/local/lib/libopenblas.so which does not have a SONAME. math/openblas needs to be fixed. Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:03 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for py27-pysparse-1.3_10 file sizes/checksums [127]: 0% file sizes/checksums [127]: 78% file sizes/checksums [127]: 100% packing files [127]: 0% packing files [127]: 78% packing files [127]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:01 TOTAL TIME 00:01:40