------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/metis-5.1.0_8.txz Installing /packages/All/tbb-2020.1.txz Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/gmp-6.2.0.txz Installing /packages/All/mpfr-4.0.2.txz Installing /packages/All/mpc-1.1.0_2.txz UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/gettext-runtime-0.20.1.txz Installing /packages/All/binutils-2.33.1_2,1.txz Installing /packages/All/gcc8-8.4.0.txz ===== Message from gcc8-8.4.0: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/openblas-0.3.7_2,1.txz Installing /packages/All/suitesparse-5.4.0_5.txz Installing /packages/All/expat-2.2.8.txz Installing /packages/All/libffi-3.2.1_3.txz Installing /packages/All/ncurses-6.1.20190525.txz Installing /packages/All/readline-8.0.4.txz Installing /packages/All/openssl-1.1.1d,1.txz Installing /packages/All/python37-3.7.6.txz ===== Message from python37-3.7.6: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py37-gdbm databases/py-gdbm@py37 py37-sqlite3 databases/py-sqlite3@py37 py37-tkinter x11-toolkits/py-tkinter@py37 Installing /packages/All/py37-setuptools-44.0.0.txz Installing /packages/All/py37-numpy-1.16.5_4,1.txz Installing /packages/All/icu-66.1,1.txz Installing /packages/All/boost-libs-1.72.0_1.txz ===== Message from boost-libs-1.72.0_1: -- You have built the Boost library with thread support. Don't forget to add -pthread to your linker options when linking your code. UNFLAVORED devel/binutils -> use devel/binutils@native SUCCEEDED 00:00:43 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> py37-pyodeint-0.10.2_3 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> py37-pyodeint-0.10.2_3 depends on file: /usr/local/sbin/pkg - found => pyodeint-0.10.2.tar.gz doesn't seem to exist in /distfiles/. => Attempting to fetch https://files.pythonhosted.org/packages/source/p/pyodeint/pyodeint-0.10.2.tar.gz pyodeint-0.10.2.tar.gz 0% of 99 kB 0 Bps pyodeint-0.10.2.tar.gz 99 kB 19 MBps 00s ===> Fetching all distfiles required by py37-pyodeint-0.10.2_3 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> py37-pyodeint-0.10.2_3 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py37-pyodeint-0.10.2_3 for building => SHA256 Checksum OK for pyodeint-0.10.2.tar.gz. SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> py37-pyodeint-0.10.2_3 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py37-pyodeint-0.10.2_3 for building ===> Extracting for py37-pyodeint-0.10.2_3 => SHA256 Checksum OK for pyodeint-0.10.2.tar.gz. Extracted Memory Use: 0.70M SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for py37-pyodeint-0.10.2_3 SUCCEEDED 00:00:02 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> py37-pyodeint-0.10.2_3 depends on package: py37-numpy>=1.15,1<1.19,1 - found ===> py37-pyodeint-0.10.2_3 depends on file: /usr/local/include/boost/config.hpp - found ===> py37-pyodeint-0.10.2_3 depends on package: py37-setuptools>0 - found ===> py37-pyodeint-0.10.2_3 depends on file: /usr/local/bin/python3.7 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> py37-pyodeint-0.10.2_3 depends on package: py37-numpy>=1.15,1<1.19,1 - found ===> py37-pyodeint-0.10.2_3 depends on file: /usr/local/include/boost/config.hpp - found ===> py37-pyodeint-0.10.2_3 depends on package: py37-setuptools>0 - found ===> py37-pyodeint-0.10.2_3 depends on file: /usr/local/bin/python3.7 - found ===> Configuring for py37-pyodeint-0.10.2_3 running config SUCCEEDED 00:00:02 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for py37-pyodeint-0.10.2_3 running build running build_py creating build creating build/lib.dragonfly-5.9-x86_64-3.7 creating build/lib.dragonfly-5.9-x86_64-3.7/pyodeint copying pyodeint/_release.py -> build/lib.dragonfly-5.9-x86_64-3.7/pyodeint copying pyodeint/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/pyodeint copying pyodeint/_util.py -> build/lib.dragonfly-5.9-x86_64-3.7/pyodeint creating build/lib.dragonfly-5.9-x86_64-3.7/pyodeint/tests copying pyodeint/tests/test_odeint_numpy.py -> build/lib.dragonfly-5.9-x86_64-3.7/pyodeint/tests copying pyodeint/tests/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/pyodeint/tests running egg_info writing pyodeint.egg-info/PKG-INFO writing dependency_links to pyodeint.egg-info/dependency_links.txt writing requirements to pyodeint.egg-info/requires.txt writing top-level names to pyodeint.egg-info/top_level.txt reading manifest file 'pyodeint.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'pyodeint.egg-info/SOURCES.txt' copying pyodeint/_odeint.cpp -> build/lib.dragonfly-5.9-x86_64-3.7/pyodeint copying pyodeint/_odeint.pyx -> build/lib.dragonfly-5.9-x86_64-3.7/pyodeint creating build/lib.dragonfly-5.9-x86_64-3.7/pyodeint/include copying pyodeint/include/odeint_anyode.hpp -> build/lib.dragonfly-5.9-x86_64-3.7/pyodeint/include copying pyodeint/include/odeint_anyode.pxd -> build/lib.dragonfly-5.9-x86_64-3.7/pyodeint/include copying pyodeint/include/odeint_anyode_nogil.pxd -> build/lib.dragonfly-5.9-x86_64-3.7/pyodeint/include copying pyodeint/include/odeint_anyode_parallel.hpp -> build/lib.dragonfly-5.9-x86_64-3.7/pyodeint/include copying pyodeint/include/odeint_anyode_parallel.pxd -> build/lib.dragonfly-5.9-x86_64-3.7/pyodeint/include creating build/lib.dragonfly-5.9-x86_64-3.7/pyodeint/include/boost creating build/lib.dragonfly-5.9-x86_64-3.7/pyodeint/include/boost/numeric creating build/lib.dragonfly-5.9-x86_64-3.7/pyodeint/include/boost/numeric/odeint creating build/lib.dragonfly-5.9-x86_64-3.7/pyodeint/include/boost/numeric/odeint/stepper copying pyodeint/include/boost/numeric/odeint/stepper/rosenbrock4_controller.hpp -> build/lib.dragonfly-5.9-x86_64-3.7/pyodeint/include/boost/numeric/odeint/stepper running build_ext building 'pyodeint._odeint' extension creating build/temp.dragonfly-5.9-x86_64-3.7 creating build/temp.dragonfly-5.9-x86_64-3.7/pyodeint cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -DANYODE_NO_LAPACK=1 -Ipyodeint/include -I/usr/local/lib/python3.7/site-packages/numpy/core/include -Iexternal/anyode/include -I/usr/local/include/python3.7m -c pyodeint/_odeint.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/pyodeint/_odeint.o -std=c++11 In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from pyodeint/_odeint.cpp:651: /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ c++ -shared -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.dragonfly-5.9-x86_64-3.7/pyodeint/_odeint.o -L/usr/local/lib -lpython3.7m -o build/lib.dragonfly-5.9-x86_64-3.7/pyodeint/_odeint.so SUCCEEDED 00:00:42 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> py37-pyodeint-0.10.2_3 depends on package: py37-numpy>=1.15,1<1.19,1 - found ===> py37-pyodeint-0.10.2_3 depends on package: py37-setuptools>0 - found ===> py37-pyodeint-0.10.2_3 depends on file: /usr/local/bin/python3.7 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for py37-pyodeint-0.10.2_3 ===> py37-pyodeint-0.10.2_3 depends on package: py37-numpy>=1.15,1<1.19,1 - found ===> py37-pyodeint-0.10.2_3 depends on package: py37-setuptools>0 - found ===> py37-pyodeint-0.10.2_3 depends on file: /usr/local/bin/python3.7 - found ===> Generating temporary packing list running install running build running build_py running egg_info writing pyodeint.egg-info/PKG-INFO writing dependency_links to pyodeint.egg-info/dependency_links.txt writing requirements to pyodeint.egg-info/requires.txt writing top-level names to pyodeint.egg-info/top_level.txt reading manifest file 'pyodeint.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'pyodeint.egg-info/SOURCES.txt' running build_ext running install_lib creating /construction/math/py-pyodeint/stage/usr/local/lib/python3.7 creating /construction/math/py-pyodeint/stage/usr/local/lib/python3.7/site-packages creating /construction/math/py-pyodeint/stage/usr/local/lib/python3.7/site-packages/pyodeint copying build/lib.dragonfly-5.9-x86_64-3.7/pyodeint/_odeint.so -> /construction/math/py-pyodeint/stage/usr/local/lib/python3.7/site-packages/pyodeint copying build/lib.dragonfly-5.9-x86_64-3.7/pyodeint/_release.py -> /construction/math/py-pyodeint/stage/usr/local/lib/python3.7/site-packages/pyodeint copying build/lib.dragonfly-5.9-x86_64-3.7/pyodeint/_util.py -> /construction/math/py-pyodeint/stage/usr/local/lib/python3.7/site-packages/pyodeint copying build/lib.dragonfly-5.9-x86_64-3.7/pyodeint/__init__.py -> /construction/math/py-pyodeint/stage/usr/local/lib/python3.7/site-packages/pyodeint copying build/lib.dragonfly-5.9-x86_64-3.7/pyodeint/_odeint.cpp -> /construction/math/py-pyodeint/stage/usr/local/lib/python3.7/site-packages/pyodeint copying build/lib.dragonfly-5.9-x86_64-3.7/pyodeint/_odeint.pyx -> /construction/math/py-pyodeint/stage/usr/local/lib/python3.7/site-packages/pyodeint creating /construction/math/py-pyodeint/stage/usr/local/lib/python3.7/site-packages/pyodeint/include copying build/lib.dragonfly-5.9-x86_64-3.7/pyodeint/include/odeint_anyode.pxd -> /construction/math/py-pyodeint/stage/usr/local/lib/python3.7/site-packages/pyodeint/include copying build/lib.dragonfly-5.9-x86_64-3.7/pyodeint/include/odeint_anyode_parallel.hpp -> /construction/math/py-pyodeint/stage/usr/local/lib/python3.7/site-packages/pyodeint/include copying build/lib.dragonfly-5.9-x86_64-3.7/pyodeint/include/odeint_anyode_parallel.pxd -> /construction/math/py-pyodeint/stage/usr/local/lib/python3.7/site-packages/pyodeint/include copying build/lib.dragonfly-5.9-x86_64-3.7/pyodeint/include/odeint_anyode.hpp -> /construction/math/py-pyodeint/stage/usr/local/lib/python3.7/site-packages/pyodeint/include copying build/lib.dragonfly-5.9-x86_64-3.7/pyodeint/include/odeint_anyode_nogil.pxd -> /construction/math/py-pyodeint/stage/usr/local/lib/python3.7/site-packages/pyodeint/include creating /construction/math/py-pyodeint/stage/usr/local/lib/python3.7/site-packages/pyodeint/include/boost creating /construction/math/py-pyodeint/stage/usr/local/lib/python3.7/site-packages/pyodeint/include/boost/numeric creating /construction/math/py-pyodeint/stage/usr/local/lib/python3.7/site-packages/pyodeint/include/boost/numeric/odeint creating /construction/math/py-pyodeint/stage/usr/local/lib/python3.7/site-packages/pyodeint/include/boost/numeric/odeint/stepper copying build/lib.dragonfly-5.9-x86_64-3.7/pyodeint/include/boost/numeric/odeint/stepper/rosenbrock4_controller.hpp -> /construction/math/py-pyodeint/stage/usr/local/lib/python3.7/site-packages/pyodeint/include/boost/numeric/odeint/stepper creating /construction/math/py-pyodeint/stage/usr/local/lib/python3.7/site-packages/pyodeint/tests copying build/lib.dragonfly-5.9-x86_64-3.7/pyodeint/tests/__init__.py -> /construction/math/py-pyodeint/stage/usr/local/lib/python3.7/site-packages/pyodeint/tests copying build/lib.dragonfly-5.9-x86_64-3.7/pyodeint/tests/test_odeint_numpy.py -> /construction/math/py-pyodeint/stage/usr/local/lib/python3.7/site-packages/pyodeint/tests byte-compiling /construction/math/py-pyodeint/stage/usr/local/lib/python3.7/site-packages/pyodeint/_release.py to _release.cpython-37.pyc byte-compiling /construction/math/py-pyodeint/stage/usr/local/lib/python3.7/site-packages/pyodeint/_util.py to _util.cpython-37.pyc byte-compiling /construction/math/py-pyodeint/stage/usr/local/lib/python3.7/site-packages/pyodeint/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/math/py-pyodeint/stage/usr/local/lib/python3.7/site-packages/pyodeint/tests/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/math/py-pyodeint/stage/usr/local/lib/python3.7/site-packages/pyodeint/tests/test_odeint_numpy.py to test_odeint_numpy.cpython-37.pyc writing byte-compilation script '/tmp/tmpha28tpys.py' /usr/local/bin/python3.7 /tmp/tmpha28tpys.py removing /tmp/tmpha28tpys.py running install_egg_info Copying pyodeint.egg-info to /construction/math/py-pyodeint/stage/usr/local/lib/python3.7/site-packages/pyodeint-0.10.2-py3.7.egg-info running install_scripts writing list of installed files to '/construction/math/py-pyodeint/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: 'lib/python3.7/site-packages/pyodeint/_odeint.so' is not stripped consider trying INSTALL_TARGET=install-strip or using ${STRIP_CMD} Error: /usr/local/lib/python3.7/site-packages/pyodeint/_odeint.so is linked to /usr/local/lib/libintl.so.8 from devel/gettext-runtime but it is not declared as a dependency Warning: you need USES+=gettext-runtime Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:05 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for py37-pyodeint-0.10.2_3 file sizes/checksums [29]: 0% file sizes/checksums [29]: 100% packing files [29]: 0% packing files [29]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:02 TOTAL TIME 00:01:39