------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/metis-5.1.0_8.tgz Message from metis-5.1.0_8: ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Installing /packages/All/indexinfo-0.3.1.tgz Installing /packages/All/gmp-6.1.2_1.tgz Installing /packages/All/mpfr-4.0.2.tgz Installing /packages/All/mpc-1.1.0_2.tgz Installing /packages/All/gettext-runtime-0.20.1.tgz Installing /packages/All/binutils-2.32_1,1.tgz Installing /packages/All/gcc8-8.3.0_3.tgz Message from gcc8-8.3.0_3: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/blas-3.5.0_6.tgz Installing /packages/All/lapack-3.5.0_8.tgz Installing /packages/All/openblas-0.2.20_10,1.tgz Installing /packages/All/suitesparse-5.2.0_4.tgz Installing /packages/All/expat-2.2.6_1.tgz Installing /packages/All/libffi-3.2.1_3.tgz Installing /packages/All/ncurses-6.1.20190525.tgz Installing /packages/All/readline-8.0.0.tgz Installing /packages/All/openssl-1.0.2s,1.tgz Message from openssl-1.0.2s,1: Edit /usr/local/openssl/openssl.cnf to fit your needs. Installing /packages/All/python36-3.6.9.tgz Message from python36-3.6.9: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py36-gdbm databases/py-gdbm@py36 py36-sqlite3 databases/py-sqlite3@py36 py36-tkinter x11-toolkits/py-tkinter@py36 =========================================================================== Installing /packages/All/py36-setuptools-41.0.1.tgz Installing /packages/All/py36-numpy-1.16.4_1,1.tgz Installing /packages/All/gsl-2.5_1.tgz SUCCEEDED 00:00:15 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- x===> Fetching all distfiles required by py36-pygsl-2.3.0_4 for building SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- x===> Fetching all distfiles required by py36-pygsl-2.3.0_4 for building => SHA256 Checksum OK for pygsl-2.3.0.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- x===> Fetching all distfiles required by py36-pygsl-2.3.0_4 for building ===> Extracting for py36-pygsl-2.3.0_4 => SHA256 Checksum OK for pygsl-2.3.0.tar.gz. Extracted Memory Use: 9.37M SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- x===> Patching for py36-pygsl-2.3.0_4 ===> Applying ports patches for py36-pygsl-2.3.0_4 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- x===> Configuring for py36-pygsl-2.3.0_4 /usr/local/lib/python3.6/site-packages/setuptools/version.py:1: UserWarning: Module errno was already imported from None, but /construction/math/py-pygsl/pygsl-2.3.0 is being added to sys.path import pkg_resources #0 extension modules running config compiling '_configtest.c': #include int main () { GSL_MAJOR_VERSION; } Warning: Can't read registry to find the necessary compiler setting Make sure that Python modules winreg, win32api or win32con are installed. C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-I/usr/local/include -c' cc: _configtest.c cc _configtest.o -L/usr/local/lib -lgsl -lgslcblas -lm -o _configtest success! removing: _configtest.c _configtest.o _configtest compiling '_configtest.c': #include int main () { GSL_MINOR_VERSION; } C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-I/usr/local/include -c' cc: _configtest.c cc _configtest.o -L/usr/local/lib -lgsl -lgslcblas -lm -o _configtest success! removing: _configtest.c _configtest.o _configtest cpp -I/usr/local/include -o _configtest.i _configtest.c removing: _configtest.c _configtest.i cpp -I/usr/local/include -o _configtest.i _configtest.c removing: _configtest.c _configtest.i cpp -I/usr/local/include -o _configtest.i _configtest.c removing: _configtest.c _configtest.i cpp -I/usr/local/include -o _configtest.i _configtest.c removing: _configtest.c _configtest.i compiling '_configtest.c': #include int main () { gsl_rng_knuthran2002; } C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-I/usr/local/include -c' cc: _configtest.c cc _configtest.o -L/usr/local/lib -lgsl -lgslcblas -lm -o _configtest success! removing: _configtest.c _configtest.o _configtest compiling '_configtest.c': #include int main () { gsl_deriv_central; } C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-I/usr/local/include -c' cc: _configtest.c cc _configtest.o -L/usr/local/lib -lgsl -lgslcblas -lm -o _configtest success! removing: _configtest.c _configtest.o _configtest compiling '_configtest.c': #include int main () { gsl_multifit_fdfsolver_lmniel; } C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-I/usr/local/include -c' cc: _configtest.c cc _configtest.o -L/usr/local/lib -lgsl -lgslcblas -lm -o _configtest success! removing: _configtest.c _configtest.o _configtest compiling '_configtest.c': #include int main () { gsl_multifit_fdfsolver_jac; } C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-I/usr/local/include -c' cc: _configtest.c cc _configtest.o -L/usr/local/lib -lgsl -lgslcblas -lm -o _configtest success! removing: _configtest.c _configtest.o _configtest compiling '_configtest.c': #include int main () { ((gsl_multifit_fdfsolver *) 0)->J; } C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-I/usr/local/include -c' cc: _configtest.c _configtest.c: In function 'main': _configtest.c:4:33: error: 'gsl_multifit_fdfsolver' {aka 'struct '} has no member named 'J' ((gsl_multifit_fdfsolver *) 0)->J; ^~ failure. removing: _configtest.c _configtest.o compiling '_configtest.c': #include int main () { ((gsl_multifit_linear_workspace *) 0)->nmax; } C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-I/usr/local/include -c' cc: _configtest.c cc _configtest.o -L/usr/local/lib -lgsl -lgslcblas -lm -o _configtest success! removing: _configtest.c _configtest.o _configtest compiling '_configtest.c': #include int main () { ((gsl_multifit_linear_workspace *) 0)->pmax; } C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-I/usr/local/include -c' cc: _configtest.c cc _configtest.o -L/usr/local/lib -lgsl -lgslcblas -lm -o _configtest success! removing: _configtest.c _configtest.o _configtest compiling '_configtest.c': #include int main () { ((gsl_multifit_linear_workspace *) 0)->n; } C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-I/usr/local/include -c' cc: _configtest.c cc _configtest.o -L/usr/local/lib -lgsl -lgslcblas -lm -o _configtest success! removing: _configtest.c _configtest.o _configtest compiling '_configtest.c': #include int main () { ((gsl_multifit_linear_workspace *) 0)->p; } C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-I/usr/local/include -c' cc: _configtest.c cc _configtest.o -L/usr/local/lib -lgsl -lgslcblas -lm -o _configtest success! removing: _configtest.c _configtest.o _configtest compiling '_configtest.c': #include int main () { gsl_multimin_fsolver; } C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-I/usr/local/include -c' cc: _configtest.c _configtest.c: In function 'main': _configtest.c:4:3: error: 'gsl_multimin_fsolver' undeclared (first use in this function); did you mean 'gsl_multimin_fminimizer'? gsl_multimin_fsolver; ^~~~~~~~~~~~~~~~~~~~ gsl_multimin_fminimizer _configtest.c:4:3: note: each undeclared identifier is reported only once for each function it appears in failure. removing: _configtest.c _configtest.o compiling '_configtest.c': #include int main () { gsl_multimin_fminimizer_nmsimplex; } C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-I/usr/local/include -c' cc: _configtest.c cc _configtest.o -L/usr/local/lib -lgsl -lgslcblas -lm -o _configtest success! removing: _configtest.c _configtest.o _configtest compiling '_configtest.c': #include int main () { gsl_multimin_fminimizer_nmsimplex2; } C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-I/usr/local/include -c' cc: _configtest.c cc _configtest.o -L/usr/local/lib -lgsl -lgslcblas -lm -o _configtest success! removing: _configtest.c _configtest.o _configtest compiling '_configtest.c': #include int main () { gsl_multimin_fminimizer_nmsimplex2rand; } C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-I/usr/local/include -c' cc: _configtest.c cc _configtest.o -L/usr/local/lib -lgsl -lgslcblas -lm -o _configtest success! removing: _configtest.c _configtest.o _configtest compiling '_configtest.c': #include int main () { gsl_multimin_fdfminimizer_vector_bfgs2; } C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-I/usr/local/include -c' cc: _configtest.c cc _configtest.o -L/usr/local/lib -lgsl -lgslcblas -lm -o _configtest success! removing: _configtest.c _configtest.o _configtest cpp -I/usr/local/include -o _configtest.i _configtest.c removing: _configtest.c _configtest.i cpp -I/usr/local/include -o _configtest.i _configtest.c removing: _configtest.c _configtest.i cpp -I/usr/local/include -o _configtest.i _configtest.c removing: _configtest.c _configtest.i cpp -I/usr/local/include -o _configtest.i _configtest.c removing: _configtest.c _configtest.i compiling '_configtest.c': #include int main () { gsl_multifit_robust_type; } C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-I/usr/local/include -c' cc: _configtest.c _configtest.c: In function 'main': _configtest.c:4:3: warning: useless type name in empty declaration gsl_multifit_robust_type; ^~~~~~~~~~~~~~~~~~~~~~~~ cc _configtest.o -L/usr/local/lib -lgsl -lgslcblas -lm -o _configtest success! removing: _configtest.c _configtest.o _configtest compiling '_configtest.c': #include int main () { gsl_permutation_linear_to_canonical; } C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-I/usr/local/include -c' cc: _configtest.c cc _configtest.o -L/usr/local/lib -lgsl -lgslcblas -lm -o _configtest success! removing: _configtest.c _configtest.o _configtest compiling '_configtest.c': #include int main () { gsl_permutation_canonical_to_linear; } C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-I/usr/local/include -c' cc: _configtest.c cc _configtest.o -L/usr/local/lib -lgsl -lgslcblas -lm -o _configtest success! removing: _configtest.c _configtest.o _configtest compiling '_configtest.c': #include int main () { gsl_permutation_inversions; } C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-I/usr/local/include -c' cc: _configtest.c cc _configtest.o -L/usr/local/lib -lgsl -lgslcblas -lm -o _configtest success! removing: _configtest.c _configtest.o _configtest compiling '_configtest.c': #include int main () { gsl_permutation_canonical_cycles; } C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-I/usr/local/include -c' cc: _configtest.c cc _configtest.o -L/usr/local/lib -lgsl -lgslcblas -lm -o _configtest success! removing: _configtest.c _configtest.o _configtest compiling '_configtest.c': #include int main () { gsl_permutation_linear_cycles; } C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-I/usr/local/include -c' cc: _configtest.c cc _configtest.o -L/usr/local/lib -lgsl -lgslcblas -lm -o _configtest success! removing: _configtest.c _configtest.o _configtest compiling '_configtest.c': #include int main () { gsl_permutation_mul; } C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-I/usr/local/include -c' cc: _configtest.c cc _configtest.o -L/usr/local/lib -lgsl -lgslcblas -lm -o _configtest success! removing: _configtest.c _configtest.o _configtest compiling '_configtest.c': #include int main () { gsl_linalg_complex_householder_mh; } C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-I/usr/local/include -c' cc: _configtest.c cc _configtest.o -L/usr/local/lib -lgsl -lgslcblas -lm -o _configtest success! removing: _configtest.c _configtest.o _configtest compiling '_configtest.c': #include int main () { gsl_linalg_hessenberg_decomp; } C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-I/usr/local/include -c' cc: _configtest.c cc _configtest.o -L/usr/local/lib -lgsl -lgslcblas -lm -o _configtest success! removing: _configtest.c _configtest.o _configtest compiling '_configtest.c': #include int main () { gsl_linalg_hessenberg_unpack; } C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-I/usr/local/include -c' cc: _configtest.c cc _configtest.o -L/usr/local/lib -lgsl -lgslcblas -lm -o _configtest success! removing: _configtest.c _configtest.o _configtest compiling '_configtest.c': #include int main () { gsl_linalg_hessenberg_unpack_accum; } C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-I/usr/local/include -c' cc: _configtest.c cc _configtest.o -L/usr/local/lib -lgsl -lgslcblas -lm -o _configtest success! removing: _configtest.c _configtest.o _configtest compiling '_configtest.c': #include int main () { gsl_linalg_hessenberg_set_zero; } C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-I/usr/local/include -c' cc: _configtest.c cc _configtest.o -L/usr/local/lib -lgsl -lgslcblas -lm -o _configtest success! removing: _configtest.c _configtest.o _configtest compiling '_configtest.c': #include int main () { gsl_linalg_hessenberg_submatrix; } C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-I/usr/local/include -c' cc: _configtest.c cc _configtest.o -L/usr/local/lib -lgsl -lgslcblas -lm -o _configtest success! removing: _configtest.c _configtest.o _configtest compiling '_configtest.c': #include int main () { gsl_linalg_hessenberg; } C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-I/usr/local/include -c' cc: _configtest.c _configtest.c: In function 'main': _configtest.c:4:3: error: 'gsl_linalg_hessenberg' undeclared (first use in this function); did you mean 'gsl_linalg_LU_sgndet'? gsl_linalg_hessenberg; ^~~~~~~~~~~~~~~~~~~~~ gsl_linalg_LU_sgndet _configtest.c:4:3: note: each undeclared identifier is reported only once for each function it appears in failure. removing: _configtest.c _configtest.o compiling '_configtest.c': #include int main () { gsl_linalg_hesstri_decomp; } C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-I/usr/local/include -c' cc: _configtest.c cc _configtest.o -L/usr/local/lib -lgsl -lgslcblas -lm -o _configtest success! removing: _configtest.c _configtest.o _configtest compiling '_configtest.c': #include int main () { gsl_linalg_SV_leverage; } C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-I/usr/local/include -c' cc: _configtest.c cc _configtest.o -L/usr/local/lib -lgsl -lgslcblas -lm -o _configtest success! removing: _configtest.c _configtest.o _configtest compiling '_configtest.c': #include int main () { gsl_linalg_QR_QTmat; } C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-I/usr/local/include -c' cc: _configtest.c cc _configtest.o -L/usr/local/lib -lgsl -lgslcblas -lm -o _configtest success! removing: _configtest.c _configtest.o _configtest compiling '_configtest.c': #include int main () { gsl_linalg_QR_matQ; } C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-I/usr/local/include -c' cc: _configtest.c cc _configtest.o -L/usr/local/lib -lgsl -lgslcblas -lm -o _configtest success! removing: _configtest.c _configtest.o _configtest compiling '_configtest.c': #include int main () { gsl_linalg_cholesky_invert; } C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-I/usr/local/include -c' cc: _configtest.c cc _configtest.o -L/usr/local/lib -lgsl -lgslcblas -lm -o _configtest success! removing: _configtest.c _configtest.o _configtest compiling '_configtest.c': #include int main () { gsl_linalg_complex_cholesky_decomp; } C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-I/usr/local/include -c' cc: _configtest.c cc _configtest.o -L/usr/local/lib -lgsl -lgslcblas -lm -o _configtest success! removing: _configtest.c _configtest.o _configtest compiling '_configtest.c': #include int main () { gsl_linalg_complex_cholesky_solve; } C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-I/usr/local/include -c' cc: _configtest.c cc _configtest.o -L/usr/local/lib -lgsl -lgslcblas -lm -o _configtest success! removing: _configtest.c _configtest.o _configtest compiling '_configtest.c': #include int main () { gsl_linalg_complex_cholesky_svx; } C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-I/usr/local/include -c' cc: _configtest.c cc _configtest.o -L/usr/local/lib -lgsl -lgslcblas -lm -o _configtest success! removing: _configtest.c _configtest.o _configtest compiling '_configtest.c': #include int main () { gsl_linalg_complex_cholesky_invert; } C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-I/usr/local/include -c' cc: _configtest.c cc _configtest.o -L/usr/local/lib -lgsl -lgslcblas -lm -o _configtest success! removing: _configtest.c _configtest.o _configtest compiling '_configtest.c': #include int main () { gsl_linalg_balance_matrix; } C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-I/usr/local/include -c' cc: _configtest.c cc _configtest.o -L/usr/local/lib -lgsl -lgslcblas -lm -o _configtest success! removing: _configtest.c _configtest.o _configtest compiling '_configtest.c': #include int main () { gsl_linalg_balance_accum; } C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-I/usr/local/include -c' cc: _configtest.c cc _configtest.o -L/usr/local/lib -lgsl -lgslcblas -lm -o _configtest success! removing: _configtest.c _configtest.o _configtest compiling '_configtest.c': #include int main () { gsl_eigen_francis_workspace; } C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-I/usr/local/include -c' cc: _configtest.c _configtest.c: In function 'main': _configtest.c:4:3: warning: useless type name in empty declaration gsl_eigen_francis_workspace; ^~~~~~~~~~~~~~~~~~~~~~~~~~~ cc _configtest.o -L/usr/local/lib -lgsl -lgslcblas -lm -o _configtest success! removing: _configtest.c _configtest.o _configtest compiling '_configtest.c': #include int main () { gsl_eigen_nonsymm_params; } C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-I/usr/local/include -c' cc: _configtest.c cc _configtest.o -L/usr/local/lib -lgsl -lgslcblas -lm -o _configtest success! removing: _configtest.c _configtest.o _configtest compiling '_configtest.c': #include int main () { gsl_sf_legendre_Plm_array(0, 0, 0.0, NULL); } C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-I/usr/local/include -c' cc: _configtest.c cc _configtest.o -L/usr/local/lib -lgsl -lgslcblas -lm -o _configtest _configtest.o:_configtest.c:function main: error: undefined reference to 'gsl_sf_legendre_Plm_array' collect2: error: ld returned 1 exit status failure. removing: _configtest.c _configtest.o compiling '_configtest.c': #include int main () { gsl_sf_legendre_sphPlm_array(0, 0, 0.0, NULL); } C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-I/usr/local/include -c' cc: _configtest.c cc _configtest.o -L/usr/local/lib -lgsl -lgslcblas -lm -o _configtest _configtest.o:_configtest.c:function main: error: undefined reference to 'gsl_sf_legendre_sphPlm_array' collect2: error: ld returned 1 exit status failure. removing: _configtest.c _configtest.o SUCCEEDED 00:02:20 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- x===> Building for py36-pygsl-2.3.0_4 /usr/local/lib/python3.6/site-packages/setuptools/version.py:1: UserWarning: Module errno was already imported from None, but /construction/math/py-pygsl/pygsl-2.3.0 is being added to sys.path import pkg_resources Building testing ufuncs! #31 extension modules running build running build_py creating build creating build/lib.dragonfly-5.7-x86_64-3.6 creating build/lib.dragonfly-5.7-x86_64-3.6/pygsl copying pygsl/gslwrap.py -> build/lib.dragonfly-5.7-x86_64-3.6/pygsl copying pygsl/siman.py -> build/lib.dragonfly-5.7-x86_64-3.6/pygsl copying pygsl/monte.py -> build/lib.dragonfly-5.7-x86_64-3.6/pygsl copying pygsl/math.py -> build/lib.dragonfly-5.7-x86_64-3.6/pygsl copying pygsl/matrix_pierre.py -> build/lib.dragonfly-5.7-x86_64-3.6/pygsl copying pygsl/__init__.py -> build/lib.dragonfly-5.7-x86_64-3.6/pygsl copying pygsl/wavelet.py -> build/lib.dragonfly-5.7-x86_64-3.6/pygsl copying pygsl/qrng.py -> build/lib.dragonfly-5.7-x86_64-3.6/pygsl copying pygsl/_generic_solver.py -> build/lib.dragonfly-5.7-x86_64-3.6/pygsl copying pygsl/interpolation.py -> build/lib.dragonfly-5.7-x86_64-3.6/pygsl copying pygsl/multiminimize.py -> build/lib.dragonfly-5.7-x86_64-3.6/pygsl copying pygsl/sum.py -> build/lib.dragonfly-5.7-x86_64-3.6/pygsl copying pygsl/fit.py -> build/lib.dragonfly-5.7-x86_64-3.6/pygsl copying pygsl/_block.py -> build/lib.dragonfly-5.7-x86_64-3.6/pygsl copying pygsl/poly.py -> build/lib.dragonfly-5.7-x86_64-3.6/pygsl copying pygsl/blas.py -> build/lib.dragonfly-5.7-x86_64-3.6/pygsl copying pygsl/_version.py -> build/lib.dragonfly-5.7-x86_64-3.6/pygsl copying pygsl/linalg.py -> build/lib.dragonfly-5.7-x86_64-3.6/pygsl copying pygsl/integrate.py -> build/lib.dragonfly-5.7-x86_64-3.6/pygsl copying pygsl/gsl_function.py -> build/lib.dragonfly-5.7-x86_64-3.6/pygsl copying pygsl/_poly.py -> build/lib.dragonfly-5.7-x86_64-3.6/pygsl copying pygsl/vector.py -> build/lib.dragonfly-5.7-x86_64-3.6/pygsl copying pygsl/eigen.py -> build/lib.dragonfly-5.7-x86_64-3.6/pygsl copying pygsl/spline.py -> build/lib.dragonfly-5.7-x86_64-3.6/pygsl copying pygsl/minimize.py -> build/lib.dragonfly-5.7-x86_64-3.6/pygsl copying pygsl/odeiv.py -> build/lib.dragonfly-5.7-x86_64-3.6/pygsl copying pygsl/_numobj.py -> build/lib.dragonfly-5.7-x86_64-3.6/pygsl copying pygsl/multifit.py -> build/lib.dragonfly-5.7-x86_64-3.6/pygsl copying pygsl/multifit_robust.py -> build/lib.dragonfly-5.7-x86_64-3.6/pygsl copying pygsl/multifit_nlin.py -> build/lib.dragonfly-5.7-x86_64-3.6/pygsl copying pygsl/odeiv2.py -> build/lib.dragonfly-5.7-x86_64-3.6/pygsl copying pygsl/interpolation2d.py -> build/lib.dragonfly-5.7-x86_64-3.6/pygsl copying pygsl/bspline.py -> build/lib.dragonfly-5.7-x86_64-3.6/pygsl copying pygsl/errors.py -> build/lib.dragonfly-5.7-x86_64-3.6/pygsl copying pygsl/combination.py -> build/lib.dragonfly-5.7-x86_64-3.6/pygsl copying pygsl/_callback.py -> build/lib.dragonfly-5.7-x86_64-3.6/pygsl copying pygsl/roots.py -> build/lib.dragonfly-5.7-x86_64-3.6/pygsl copying pygsl/multiroots.py -> build/lib.dragonfly-5.7-x86_64-3.6/pygsl copying pygsl/chebyshev.py -> build/lib.dragonfly-5.7-x86_64-3.6/pygsl copying pygsl/hankel.py -> build/lib.dragonfly-5.7-x86_64-3.6/pygsl copying pygsl/fft.py -> build/lib.dragonfly-5.7-x86_64-3.6/pygsl copying pygsl/permutation.py -> build/lib.dragonfly-5.7-x86_64-3.6/pygsl copying pygsl/block.py -> build/lib.dragonfly-5.7-x86_64-3.6/pygsl copying pygsl/interpolation2d_wrap.py -> build/lib.dragonfly-5.7-x86_64-3.6/pygsl creating build/lib.dragonfly-5.7-x86_64-3.6/pygsl/testing copying pygsl/testing/__init__.py -> build/lib.dragonfly-5.7-x86_64-3.6/pygsl/testing copying pygsl/testing/complex.py -> build/lib.dragonfly-5.7-x86_64-3.6/pygsl/testing copying pygsl/testing/sf.py -> build/lib.dragonfly-5.7-x86_64-3.6/pygsl/testing creating build/lib.dragonfly-5.7-x86_64-3.6/pygsl/statistics copying pygsl/statistics/__init__.py -> build/lib.dragonfly-5.7-x86_64-3.6/pygsl/statistics creating build/lib.dragonfly-5.7-x86_64-3.6/pygsl/gsl_dist copying gsl_dist/gsl_features.py -> build/lib.dragonfly-5.7-x86_64-3.6/pygsl/gsl_dist copying gsl_dist/gsl_site_example.py -> build/lib.dragonfly-5.7-x86_64-3.6/pygsl/gsl_dist copying gsl_dist/gsl_CodeGenerator3.py -> build/lib.dragonfly-5.7-x86_64-3.6/pygsl/gsl_dist copying gsl_dist/array_includes.py -> build/lib.dragonfly-5.7-x86_64-3.6/pygsl/gsl_dist copying gsl_dist/gsl_Extension.py -> build/lib.dragonfly-5.7-x86_64-3.6/pygsl/gsl_dist copying gsl_dist/__init__.py -> build/lib.dragonfly-5.7-x86_64-3.6/pygsl/gsl_dist copying gsl_dist/swig_extension.py -> build/lib.dragonfly-5.7-x86_64-3.6/pygsl/gsl_dist copying gsl_dist/gsl_CodeGenerator2.py -> build/lib.dragonfly-5.7-x86_64-3.6/pygsl/gsl_dist copying gsl_dist/gsl_Config.py -> build/lib.dragonfly-5.7-x86_64-3.6/pygsl/gsl_dist copying gsl_dist/gsl_Location.py -> build/lib.dragonfly-5.7-x86_64-3.6/pygsl/gsl_dist copying gsl_dist/gsl_CodeGenerator.py -> build/lib.dragonfly-5.7-x86_64-3.6/pygsl/gsl_dist running build_ext building 'errno' extension Warning: Can't read registry to find the necessary compiler setting Make sure that Python modules winreg, win32api or win32con are installed. C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating build/temp.dragonfly-5.7-x86_64-3.6 creating build/temp.dragonfly-5.7-x86_64-3.6/src creating build/temp.dragonfly-5.7-x86_64-3.6/src/init compile options: '-DSWIG_COBJECT_TYPES=1 -DDEBUG=1 -DPyGSL_SET_GSL_ERROR_HANDLER=1 -DNUMERIC=0 -UNDEBUG -I/usr/local/include -IInclude -I. -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c' cc: src/init/errorno.c cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-x86_64-3.6/src/init/errorno.o -L/usr/local/lib -L/usr/local/lib -lgsl -lgslcblas -lm -lpython3.6m -o build/lib.dragonfly-5.7-x86_64-3.6/pygsl/errno.so building 'init' extension C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-DSWIG_COBJECT_TYPES=1 -DDEBUG=1 -DPyGSL_SET_GSL_ERROR_HANDLER=1 -DNUMERIC=0 -UNDEBUG -I/usr/local/include -IInclude -I. -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c' cc: src/init/initmodule.c In file included from src/init/block_helpers.c:282, from src/init/initmodule.c:77: src/init/block_helpers_numpy.ic: In function 'PyGSL_numpy_convert': src/init/block_helpers_numpy.ic:122:6: warning: 'NPY_CHAR' is deprecated: Use NPY_STRING [-Wdeprecated-declarations] DEBUG_MESS(8, "Char type %d", NPY_CHAR); ^~~~~~~~~~ In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from Include/pygsl/block_helpers.h:79, from src/init/block_helpers.c:15, from src/init/initmodule.c:77: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:84:21: note: declared here NPY_CHAR NPY_ATTR_DEPRECATE("Use NPY_STRING"), ^~~~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-x86_64-3.6/src/init/initmodule.o -L/usr/local/lib -L/usr/local/lib -lgsl -lgslcblas -lm -lpython3.6m -o build/lib.dragonfly-5.7-x86_64-3.6/pygsl/init.so building 'inittest' extension C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-DSWIG_COBJECT_TYPES=1 -DDEBUG=1 -DPyGSL_SET_GSL_ERROR_HANDLER=1 -DNUMERIC=0 -UNDEBUG -I/usr/local/include -IInclude -I. -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c' cc: src/init/inittestmodule.c cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-x86_64-3.6/src/init/inittestmodule.o -L/usr/local/lib -L/usr/local/lib -lgsl -lgslcblas -lm -lpython3.6m -o build/lib.dragonfly-5.7-x86_64-3.6/pygsl/inittest.so building '_gslwrap' extension C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating build/temp.dragonfly-5.7-x86_64-3.6/swig_src compile options: '-DSWIG_COBJECT_TYPES=1 -DDEBUG=1 -DPyGSL_SET_GSL_ERROR_HANDLER=1 -DNUMERIC=0 -UNDEBUG -I/usr/local/include -IInclude -I. -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c' cc: swig_src/gslwrap_wrap.c In file included from ./typemaps/block_conversion_functions.h:14, from swig_src/gslwrap_wrap.c:3087: ./typemaps/convert_block_description.h:163:1: warning: 'NPY_CHAR' is deprecated: Use NPY_STRING [-Wdeprecated-declarations] gsl_vector_char_py_array_type = NPY_CHAR , ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from Include/pygsl/block_helpers.h:79, from swig_src/gslwrap_wrap.c:3086: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:84:21: note: declared here NPY_CHAR NPY_ATTR_DEPRECATE("Use NPY_STRING"), ^~~~~~~~ In file included from ./typemaps/block_conversion_functions.h:14, from swig_src/gslwrap_wrap.c:3087: ./typemaps/convert_block_description.h:180:1: warning: 'NPY_CHAR' is deprecated: Use NPY_STRING [-Wdeprecated-declarations] gsl_vector_char_view_py_array_type = NPY_CHAR , ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from Include/pygsl/block_helpers.h:79, from swig_src/gslwrap_wrap.c:3086: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:84:21: note: declared here NPY_CHAR NPY_ATTR_DEPRECATE("Use NPY_STRING"), ^~~~~~~~ In file included from ./typemaps/block_conversion_functions.h:14, from swig_src/gslwrap_wrap.c:3087: ./typemaps/convert_block_description.h:446:1: warning: 'NPY_CHAR' is deprecated: Use NPY_STRING [-Wdeprecated-declarations] gsl_matrix_char_py_array_type = NPY_CHAR , ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from Include/pygsl/block_helpers.h:79, from swig_src/gslwrap_wrap.c:3086: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:84:21: note: declared here NPY_CHAR NPY_ATTR_DEPRECATE("Use NPY_STRING"), ^~~~~~~~ In file included from ./typemaps/block_conversion_functions.h:14, from swig_src/gslwrap_wrap.c:3087: ./typemaps/convert_block_description.h:463:1: warning: 'NPY_CHAR' is deprecated: Use NPY_STRING [-Wdeprecated-declarations] gsl_matrix_char_view_py_array_type = NPY_CHAR , ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from Include/pygsl/block_helpers.h:79, from swig_src/gslwrap_wrap.c:3086: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:84:21: note: declared here NPY_CHAR NPY_ATTR_DEPRECATE("Use NPY_STRING"), ^~~~~~~~ swig_src/gslwrap_wrap.c: In function 'SWIG_Python_addvarlink': swig_src/gslwrap_wrap.c:40862:9: warning: 'strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] strncpy(gv->name,name,size); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ swig_src/gslwrap_wrap.c:40859:21: note: length computed here size_t size = strlen(name)+1; ^~~~~~~~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-x86_64-3.6/swig_src/gslwrap_wrap.o -L/usr/local/lib -L/usr/local/lib -lgsl -lgslcblas -lm -lpython3.6m -o build/lib.dragonfly-5.7-x86_64-3.6/pygsl/_gslwrap.so building '_hankel' extension C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-DSWIG_COBJECT_TYPES=1 -DDEBUG=1 -DPyGSL_SET_GSL_ERROR_HANDLER=1 -DNUMERIC=0 -UNDEBUG -I/usr/local/include -IInclude -I. -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c' cc: swig_src/hankel_wrap.c cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-x86_64-3.6/swig_src/hankel_wrap.o -L/usr/local/lib -L/usr/local/lib -lgsl -lgslcblas -lm -lpython3.6m -o build/lib.dragonfly-5.7-x86_64-3.6/pygsl/_hankel.so building '_sum' extension C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-DSWIG_COBJECT_TYPES=1 -DDEBUG=1 -DPyGSL_SET_GSL_ERROR_HANDLER=1 -DNUMERIC=0 -UNDEBUG -I/usr/local/include -IInclude -I. -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c' cc: swig_src/sum_wrap.c cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-x86_64-3.6/swig_src/sum_wrap.o -L/usr/local/lib -L/usr/local/lib -lgsl -lgslcblas -lm -lpython3.6m -o build/lib.dragonfly-5.7-x86_64-3.6/pygsl/_sum.so building '_bspline' extension C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-DSWIG_COBJECT_TYPES=1 -DDEBUG=1 -DPyGSL_SET_GSL_ERROR_HANDLER=1 -DNUMERIC=0 -UNDEBUG -I/usr/local/include -Isrc/bspline -IInclude -I. -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c' cc: swig_src/bspline_wrap.c In file included from ./typemaps/block_conversion_functions.h:14, from swig_src/bspline_wrap.c:3780: ./typemaps/convert_block_description.h:163:1: warning: 'NPY_CHAR' is deprecated: Use NPY_STRING [-Wdeprecated-declarations] gsl_vector_char_py_array_type = NPY_CHAR , ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from Include/pygsl/block_helpers.h:79, from swig_src/bspline_wrap.c:3779: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:84:21: note: declared here NPY_CHAR NPY_ATTR_DEPRECATE("Use NPY_STRING"), ^~~~~~~~ In file included from ./typemaps/block_conversion_functions.h:14, from swig_src/bspline_wrap.c:3780: ./typemaps/convert_block_description.h:180:1: warning: 'NPY_CHAR' is deprecated: Use NPY_STRING [-Wdeprecated-declarations] gsl_vector_char_view_py_array_type = NPY_CHAR , ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from Include/pygsl/block_helpers.h:79, from swig_src/bspline_wrap.c:3779: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:84:21: note: declared here NPY_CHAR NPY_ATTR_DEPRECATE("Use NPY_STRING"), ^~~~~~~~ In file included from ./typemaps/block_conversion_functions.h:14, from swig_src/bspline_wrap.c:3780: ./typemaps/convert_block_description.h:446:1: warning: 'NPY_CHAR' is deprecated: Use NPY_STRING [-Wdeprecated-declarations] gsl_matrix_char_py_array_type = NPY_CHAR , ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from Include/pygsl/block_helpers.h:79, from swig_src/bspline_wrap.c:3779: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:84:21: note: declared here NPY_CHAR NPY_ATTR_DEPRECATE("Use NPY_STRING"), ^~~~~~~~ In file included from ./typemaps/block_conversion_functions.h:14, from swig_src/bspline_wrap.c:3780: ./typemaps/convert_block_description.h:463:1: warning: 'NPY_CHAR' is deprecated: Use NPY_STRING [-Wdeprecated-declarations] gsl_matrix_char_view_py_array_type = NPY_CHAR , ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from Include/pygsl/block_helpers.h:79, from swig_src/bspline_wrap.c:3779: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:84:21: note: declared here NPY_CHAR NPY_ATTR_DEPRECATE("Use NPY_STRING"), ^~~~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-x86_64-3.6/swig_src/bspline_wrap.o -L/usr/local/lib -L/usr/local/lib -lgsl -lgslcblas -lm -lpython3.6m -o build/lib.dragonfly-5.7-x86_64-3.6/pygsl/_bspline.so building '_interpolation2d_wrap' extension C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-DSWIG_COBJECT_TYPES=1 -DDEBUG=1 -DPyGSL_SET_GSL_ERROR_HANDLER=1 -DNUMERIC=0 -UNDEBUG -I/usr/local/include -Isrc/gslwrap -IInclude -I. -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c' cc: swig_src/interpolation2d_wrap_wrap.c In file included from ./typemaps/block_conversion_functions.h:14, from swig_src/interpolation2d_wrap_wrap.c:3790: ./typemaps/convert_block_description.h:163:1: warning: 'NPY_CHAR' is deprecated: Use NPY_STRING [-Wdeprecated-declarations] gsl_vector_char_py_array_type = NPY_CHAR , ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from swig_src/interpolation2d_wrap_wrap.c:3769: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:84:21: note: declared here NPY_CHAR NPY_ATTR_DEPRECATE("Use NPY_STRING"), ^~~~~~~~ In file included from ./typemaps/block_conversion_functions.h:14, from swig_src/interpolation2d_wrap_wrap.c:3790: ./typemaps/convert_block_description.h:180:1: warning: 'NPY_CHAR' is deprecated: Use NPY_STRING [-Wdeprecated-declarations] gsl_vector_char_view_py_array_type = NPY_CHAR , ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from swig_src/interpolation2d_wrap_wrap.c:3769: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:84:21: note: declared here NPY_CHAR NPY_ATTR_DEPRECATE("Use NPY_STRING"), ^~~~~~~~ In file included from ./typemaps/block_conversion_functions.h:14, from swig_src/interpolation2d_wrap_wrap.c:3790: ./typemaps/convert_block_description.h:446:1: warning: 'NPY_CHAR' is deprecated: Use NPY_STRING [-Wdeprecated-declarations] gsl_matrix_char_py_array_type = NPY_CHAR , ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from swig_src/interpolation2d_wrap_wrap.c:3769: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:84:21: note: declared here NPY_CHAR NPY_ATTR_DEPRECATE("Use NPY_STRING"), ^~~~~~~~ In file included from ./typemaps/block_conversion_functions.h:14, from swig_src/interpolation2d_wrap_wrap.c:3790: ./typemaps/convert_block_description.h:463:1: warning: 'NPY_CHAR' is deprecated: Use NPY_STRING [-Wdeprecated-declarations] gsl_matrix_char_view_py_array_type = NPY_CHAR , ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from swig_src/interpolation2d_wrap_wrap.c:3769: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:84:21: note: declared here NPY_CHAR NPY_ATTR_DEPRECATE("Use NPY_STRING"), ^~~~~~~~ swig_src/interpolation2d_wrap_wrap.c: In function 'SWIG_Python_addvarlink': swig_src/interpolation2d_wrap_wrap.c:8895:9: warning: 'strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] strncpy(gv->name,name,size); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ swig_src/interpolation2d_wrap_wrap.c:8892:21: note: length computed here size_t size = strlen(name)+1; ^~~~~~~~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-x86_64-3.6/swig_src/interpolation2d_wrap_wrap.o -L/usr/local/lib -L/usr/local/lib -lgsl -lgslcblas -lm -lpython3.6m -o build/lib.dragonfly-5.7-x86_64-3.6/pygsl/_interpolation2d_wrap.so building '_multifit_robust' extension C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-DSWIG_COBJECT_TYPES=1 -DDEBUG=1 -DPyGSL_SET_GSL_ERROR_HANDLER=1 -DNUMERIC=0 -UNDEBUG -I/usr/local/include -Isrc/callback -IInclude -I. -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c' cc: swig_src/multifit_robust_wrap.c In file included from ./typemaps/block_conversion_functions.h:14, from swig_src/multifit_robust_wrap.c:3780: ./typemaps/convert_block_description.h:163:1: warning: 'NPY_CHAR' is deprecated: Use NPY_STRING [-Wdeprecated-declarations] gsl_vector_char_py_array_type = NPY_CHAR , ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from Include/pygsl/block_helpers.h:79, from swig_src/multifit_robust_wrap.c:3775: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:84:21: note: declared here NPY_CHAR NPY_ATTR_DEPRECATE("Use NPY_STRING"), ^~~~~~~~ In file included from ./typemaps/block_conversion_functions.h:14, from swig_src/multifit_robust_wrap.c:3780: ./typemaps/convert_block_description.h:180:1: warning: 'NPY_CHAR' is deprecated: Use NPY_STRING [-Wdeprecated-declarations] gsl_vector_char_view_py_array_type = NPY_CHAR , ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from Include/pygsl/block_helpers.h:79, from swig_src/multifit_robust_wrap.c:3775: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:84:21: note: declared here NPY_CHAR NPY_ATTR_DEPRECATE("Use NPY_STRING"), ^~~~~~~~ In file included from ./typemaps/block_conversion_functions.h:14, from swig_src/multifit_robust_wrap.c:3780: ./typemaps/convert_block_description.h:446:1: warning: 'NPY_CHAR' is deprecated: Use NPY_STRING [-Wdeprecated-declarations] gsl_matrix_char_py_array_type = NPY_CHAR , ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from Include/pygsl/block_helpers.h:79, from swig_src/multifit_robust_wrap.c:3775: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:84:21: note: declared here NPY_CHAR NPY_ATTR_DEPRECATE("Use NPY_STRING"), ^~~~~~~~ In file included from ./typemaps/block_conversion_functions.h:14, from swig_src/multifit_robust_wrap.c:3780: ./typemaps/convert_block_description.h:463:1: warning: 'NPY_CHAR' is deprecated: Use NPY_STRING [-Wdeprecated-declarations] gsl_matrix_char_view_py_array_type = NPY_CHAR , ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from Include/pygsl/block_helpers.h:79, from swig_src/multifit_robust_wrap.c:3775: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:84:21: note: declared here NPY_CHAR NPY_ATTR_DEPRECATE("Use NPY_STRING"), ^~~~~~~~ swig_src/multifit_robust_wrap.c: In function 'SWIG_Python_addvarlink': swig_src/multifit_robust_wrap.c:6081:9: warning: 'strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] strncpy(gv->name,name,size); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ swig_src/multifit_robust_wrap.c:6078:21: note: length computed here size_t size = strlen(name)+1; ^~~~~~~~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-x86_64-3.6/swig_src/multifit_robust_wrap.o -L/usr/local/lib -L/usr/local/lib -lgsl -lgslcblas -lm -lpython3.6m -o build/lib.dragonfly-5.7-x86_64-3.6/pygsl/_multifit_robust.so building '_odeiv2' extension C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-DSWIG_COBJECT_TYPES=1 -DDEBUG=1 -DPyGSL_SET_GSL_ERROR_HANDLER=1 -DNUMERIC=0 -UNDEBUG -I/usr/local/include -Isrc/callback -IInclude -I. -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c' cc: swig_src/odeiv2_wrap.c swig_src/odeiv2_wrap.c: In function 'SWIG_Python_addvarlink': swig_src/odeiv2_wrap.c:8084:9: warning: 'strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] strncpy(gv->name,name,size); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ swig_src/odeiv2_wrap.c:8081:21: note: length computed here size_t size = strlen(name)+1; ^~~~~~~~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-x86_64-3.6/swig_src/odeiv2_wrap.o -L/usr/local/lib -L/usr/local/lib -lgsl -lgslcblas -lm -lpython3.6m -o build/lib.dragonfly-5.7-x86_64-3.6/pygsl/_odeiv2.so building '__poly' extension C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-DSWIG_COBJECT_TYPES=1 -DDEBUG=1 -DPyGSL_SET_GSL_ERROR_HANDLER=1 -DNUMERIC=0 -UNDEBUG -I/usr/local/include -Isrc/poly -IInclude -I. -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c' cc: swig_src/poly_wrap.c cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-x86_64-3.6/swig_src/poly_wrap.o -L/usr/local/lib -L/usr/local/lib -lgsl -lgslcblas -lm -lpython3.6m -o build/lib.dragonfly-5.7-x86_64-3.6/pygsl/__poly.so building '__block' extension C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-DSWIG_COBJECT_TYPES=1 -DDEBUG=1 -DPyGSL_SET_GSL_ERROR_HANDLER=1 -DNUMERIC=0 -UNDEBUG -I/usr/local/include -IInclude -I. -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c' cc: swig_src/block_wrap.c In file included from ./typemaps/block_conversion_functions.h:14, from swig_src/block_wrap.c:3870: ./typemaps/convert_block_description.h:163:1: warning: 'NPY_CHAR' is deprecated: Use NPY_STRING [-Wdeprecated-declarations] gsl_vector_char_py_array_type = NPY_CHAR , ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from Include/pygsl/block_helpers.h:79, from swig_src/block_wrap.c:3869: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:84:21: note: declared here NPY_CHAR NPY_ATTR_DEPRECATE("Use NPY_STRING"), ^~~~~~~~ In file included from ./typemaps/block_conversion_functions.h:14, from swig_src/block_wrap.c:3870: ./typemaps/convert_block_description.h:180:1: warning: 'NPY_CHAR' is deprecated: Use NPY_STRING [-Wdeprecated-declarations] gsl_vector_char_view_py_array_type = NPY_CHAR , ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from Include/pygsl/block_helpers.h:79, from swig_src/block_wrap.c:3869: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:84:21: note: declared here NPY_CHAR NPY_ATTR_DEPRECATE("Use NPY_STRING"), ^~~~~~~~ In file included from ./typemaps/block_conversion_functions.h:14, from swig_src/block_wrap.c:3870: ./typemaps/convert_block_description.h:446:1: warning: 'NPY_CHAR' is deprecated: Use NPY_STRING [-Wdeprecated-declarations] gsl_matrix_char_py_array_type = NPY_CHAR , ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from Include/pygsl/block_helpers.h:79, from swig_src/block_wrap.c:3869: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:84:21: note: declared here NPY_CHAR NPY_ATTR_DEPRECATE("Use NPY_STRING"), ^~~~~~~~ In file included from ./typemaps/block_conversion_functions.h:14, from swig_src/block_wrap.c:3870: ./typemaps/convert_block_description.h:463:1: warning: 'NPY_CHAR' is deprecated: Use NPY_STRING [-Wdeprecated-declarations] gsl_matrix_char_view_py_array_type = NPY_CHAR , ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from Include/pygsl/block_helpers.h:79, from swig_src/block_wrap.c:3869: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:84:21: note: declared here NPY_CHAR NPY_ATTR_DEPRECATE("Use NPY_STRING"), ^~~~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-x86_64-3.6/swig_src/block_wrap.o -L/usr/local/lib -L/usr/local/lib -lgsl -lgslcblas -lm -lpython3.6m -o build/lib.dragonfly-5.7-x86_64-3.6/pygsl/__block.so building '_siman' extension C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-DSWIG_COBJECT_TYPES=1 -DDEBUG=1 -DPyGSL_SET_GSL_ERROR_HANDLER=1 -DNUMERIC=0 -UNDEBUG -I/usr/local/include -IInclude -I. -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c' cc: src/simanmodule.c cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-x86_64-3.6/src/simanmodule.o -L/usr/local/lib -L/usr/local/lib -lgsl -lgslcblas -lm -lpython3.6m -o build/lib.dragonfly-5.7-x86_64-3.6/pygsl/_siman.so building 'const' extension C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-DSWIG_COBJECT_TYPES=1 -DDEBUG=1 -DPyGSL_SET_GSL_ERROR_HANDLER=1 -DNUMERIC=0 -UNDEBUG -I/usr/local/include -IInclude -I. -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c' cc: src/constmodule.c cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-x86_64-3.6/src/constmodule.o -L/usr/local/lib -L/usr/local/lib -lgsl -lgslcblas -lm -lpython3.6m -o build/lib.dragonfly-5.7-x86_64-3.6/pygsl/const.so building '__callback' extension C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-DSWIG_COBJECT_TYPES=1 -DDEBUG=1 -DPyGSL_SET_GSL_ERROR_HANDLER=1 -DNUMERIC=0 -UNDEBUG -I/usr/local/include -Isrc/callback -IInclude -I. -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c' cc: swig_src/callback_wrap.c In file included from ./typemaps/block_conversion_functions.h:14, from swig_src/callback_wrap.c:3838: ./typemaps/convert_block_description.h:163:1: warning: 'NPY_CHAR' is deprecated: Use NPY_STRING [-Wdeprecated-declarations] gsl_vector_char_py_array_type = NPY_CHAR , ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from Include/pygsl/block_helpers.h:79, from Include/pygsl/function_helpers.h:33, from swig_src/callback_wrap.c:3818: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:84:21: note: declared here NPY_CHAR NPY_ATTR_DEPRECATE("Use NPY_STRING"), ^~~~~~~~ In file included from ./typemaps/block_conversion_functions.h:14, from swig_src/callback_wrap.c:3838: ./typemaps/convert_block_description.h:180:1: warning: 'NPY_CHAR' is deprecated: Use NPY_STRING [-Wdeprecated-declarations] gsl_vector_char_view_py_array_type = NPY_CHAR , ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from Include/pygsl/block_helpers.h:79, from Include/pygsl/function_helpers.h:33, from swig_src/callback_wrap.c:3818: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:84:21: note: declared here NPY_CHAR NPY_ATTR_DEPRECATE("Use NPY_STRING"), ^~~~~~~~ In file included from ./typemaps/block_conversion_functions.h:14, from swig_src/callback_wrap.c:3838: ./typemaps/convert_block_description.h:446:1: warning: 'NPY_CHAR' is deprecated: Use NPY_STRING [-Wdeprecated-declarations] gsl_matrix_char_py_array_type = NPY_CHAR , ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from Include/pygsl/block_helpers.h:79, from Include/pygsl/function_helpers.h:33, from swig_src/callback_wrap.c:3818: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:84:21: note: declared here NPY_CHAR NPY_ATTR_DEPRECATE("Use NPY_STRING"), ^~~~~~~~ In file included from ./typemaps/block_conversion_functions.h:14, from swig_src/callback_wrap.c:3838: ./typemaps/convert_block_description.h:463:1: warning: 'NPY_CHAR' is deprecated: Use NPY_STRING [-Wdeprecated-declarations] gsl_matrix_char_view_py_array_type = NPY_CHAR , ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from Include/pygsl/block_helpers.h:79, from Include/pygsl/function_helpers.h:33, from swig_src/callback_wrap.c:3818: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:84:21: note: declared here NPY_CHAR NPY_ATTR_DEPRECATE("Use NPY_STRING"), ^~~~~~~~ swig_src/callback_wrap.c: In function 'SWIG_Python_addvarlink': swig_src/callback_wrap.c:17475:9: warning: 'strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] strncpy(gv->name,name,size); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ swig_src/callback_wrap.c:17472:21: note: length computed here size_t size = strlen(name)+1; ^~~~~~~~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-x86_64-3.6/swig_src/callback_wrap.o -L/usr/local/lib -L/usr/local/lib -lgsl -lgslcblas -lm -lpython3.6m -o build/lib.dragonfly-5.7-x86_64-3.6/pygsl/__callback.so building 'deriv' extension C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-DSWIG_COBJECT_TYPES=1 -DDEBUG=1 -DPyGSL_SET_GSL_ERROR_HANDLER=1 -DNUMERIC=0 -UNDEBUG -I/usr/local/include -IInclude -I. -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c' cc: src/derivmodule.c cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-x86_64-3.6/src/derivmodule.o -L/usr/local/lib -L/usr/local/lib -lgsl -lgslcblas -lm -lpython3.6m -o build/lib.dragonfly-5.7-x86_64-3.6/pygsl/deriv.so building '_transform' extension C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating build/temp.dragonfly-5.7-x86_64-3.6/src/transform compile options: '-DSWIG_COBJECT_TYPES=1 -DDEBUG=1 -DPyGSL_SET_GSL_ERROR_HANDLER=1 -DNUMERIC=0 -UNDEBUG -I/usr/local/include -IInclude -I. -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c' cc: src/transform/transformmodule.c cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-x86_64-3.6/src/transform/transformmodule.o -L/usr/local/lib -L/usr/local/lib -lgsl -lgslcblas -lm -lpython3.6m -o build/lib.dragonfly-5.7-x86_64-3.6/pygsl/_transform.so building 'rng' extension C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating build/temp.dragonfly-5.7-x86_64-3.6/src/rng compile options: '-DSWIG_COBJECT_TYPES=1 -DDEBUG=1 -DPyGSL_SET_GSL_ERROR_HANDLER=1 -DNUMERIC=0 -UNDEBUG -I/usr/local/include -IInclude -I. -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c' cc: src/rng/rngmodule.c cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-x86_64-3.6/src/rng/rngmodule.o -L/usr/local/lib -L/usr/local/lib -lgsl -lgslcblas -lm -lpython3.6m -o build/lib.dragonfly-5.7-x86_64-3.6/pygsl/rng.so building 'ieee' extension C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-DSWIG_COBJECT_TYPES=1 -DDEBUG=1 -DPyGSL_SET_GSL_ERROR_HANDLER=1 -DNUMERIC=0 -UNDEBUG -I/usr/local/include -IInclude -I. -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c' cc: src/ieeemodule.c src/ieeemodule.c:169:135: warning: backslash and newline separated by space rounding : one of :py:data:`round_to_nearest` , :py:data:`round_down` , :py:data:`round_up` , :py:data:`round_to_zero` \n\ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-x86_64-3.6/src/ieeemodule.o -L/usr/local/lib -L/usr/local/lib -lgsl -lgslcblas -lm -lpython3.6m -o build/lib.dragonfly-5.7-x86_64-3.6/pygsl/ieee.so building '_qrng' extension C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-DSWIG_COBJECT_TYPES=1 -DDEBUG=1 -DPyGSL_SET_GSL_ERROR_HANDLER=1 -DNUMERIC=0 -UNDEBUG -I/usr/local/include -IInclude -I. -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c' cc: src/qrng_module.c cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-x86_64-3.6/src/qrng_module.o -L/usr/local/lib -L/usr/local/lib -lgsl -lgslcblas -lm -lpython3.6m -o build/lib.dragonfly-5.7-x86_64-3.6/pygsl/_qrng.so building 'statistics._stat' extension C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating build/temp.dragonfly-5.7-x86_64-3.6/src/statistics compile options: '-DSWIG_COBJECT_TYPES=1 -DDEBUG=1 -DPyGSL_SET_GSL_ERROR_HANDLER=1 -DNUMERIC=0 -UNDEBUG -I/usr/local/include -IInclude -I. -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c' cc: src/statistics/_statmodule.c cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-x86_64-3.6/src/statistics/_statmodule.o -L/usr/local/lib -L/usr/local/lib -lgsl -lgslcblas -lm -lpython3.6m -o build/lib.dragonfly-5.7-x86_64-3.6/pygsl/statistics/_stat.so building 'statistics.uchar' extension C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-DSWIG_COBJECT_TYPES=1 -DDEBUG=1 -DPyGSL_SET_GSL_ERROR_HANDLER=1 -DNUMERIC=0 -UNDEBUG -I/usr/local/include -IInclude -I. -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c' cc: src/statistics/ucharmodule.c cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-x86_64-3.6/src/statistics/ucharmodule.o -L/usr/local/lib -L/usr/local/lib -lgsl -lgslcblas -lm -lpython3.6m -o build/lib.dragonfly-5.7-x86_64-3.6/pygsl/statistics/uchar.so building 'statistics.char' extension C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-DSWIG_COBJECT_TYPES=1 -DDEBUG=1 -DPyGSL_SET_GSL_ERROR_HANDLER=1 -DNUMERIC=0 -UNDEBUG -I/usr/local/include -IInclude -I. -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c' cc: src/statistics/charmodule.c cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-x86_64-3.6/src/statistics/charmodule.o -L/usr/local/lib -L/usr/local/lib -lgsl -lgslcblas -lm -lpython3.6m -o build/lib.dragonfly-5.7-x86_64-3.6/pygsl/statistics/char.so building 'statistics.double' extension C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-DSWIG_COBJECT_TYPES=1 -DDEBUG=1 -DPyGSL_SET_GSL_ERROR_HANDLER=1 -DNUMERIC=0 -UNDEBUG -I/usr/local/include -IInclude -I. -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c' cc: src/statistics/doublemodule.c cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-x86_64-3.6/src/statistics/doublemodule.o -L/usr/local/lib -L/usr/local/lib -lgsl -lgslcblas -lm -lpython3.6m -o build/lib.dragonfly-5.7-x86_64-3.6/pygsl/statistics/double.so building 'statistics.float' extension C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-DSWIG_COBJECT_TYPES=1 -DDEBUG=1 -DPyGSL_SET_GSL_ERROR_HANDLER=1 -DNUMERIC=0 -UNDEBUG -I/usr/local/include -IInclude -I. -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c' cc: src/statistics/floatmodule.c cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-x86_64-3.6/src/statistics/floatmodule.o -L/usr/local/lib -L/usr/local/lib -lgsl -lgslcblas -lm -lpython3.6m -o build/lib.dragonfly-5.7-x86_64-3.6/pygsl/statistics/float.so building 'statistics.long' extension C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-DSWIG_COBJECT_TYPES=1 -DDEBUG=1 -DPyGSL_SET_GSL_ERROR_HANDLER=1 -DNUMERIC=0 -UNDEBUG -I/usr/local/include -IInclude -I. -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c' cc: src/statistics/longmodule.c cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-x86_64-3.6/src/statistics/longmodule.o -L/usr/local/lib -L/usr/local/lib -lgsl -lgslcblas -lm -lpython3.6m -o build/lib.dragonfly-5.7-x86_64-3.6/pygsl/statistics/long.so building 'statistics.int' extension C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-DSWIG_COBJECT_TYPES=1 -DDEBUG=1 -DPyGSL_SET_GSL_ERROR_HANDLER=1 -DNUMERIC=0 -UNDEBUG -I/usr/local/include -IInclude -I. -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c' cc: src/statistics/intmodule.c cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-x86_64-3.6/src/statistics/intmodule.o -L/usr/local/lib -L/usr/local/lib -lgsl -lgslcblas -lm -lpython3.6m -o build/lib.dragonfly-5.7-x86_64-3.6/pygsl/statistics/int.so building 'statistics.short' extension C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-DSWIG_COBJECT_TYPES=1 -DDEBUG=1 -DPyGSL_SET_GSL_ERROR_HANDLER=1 -DNUMERIC=0 -UNDEBUG -I/usr/local/include -IInclude -I. -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c' cc: src/statistics/shortmodule.c cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-x86_64-3.6/src/statistics/shortmodule.o -L/usr/local/lib -L/usr/local/lib -lgsl -lgslcblas -lm -lpython3.6m -o build/lib.dragonfly-5.7-x86_64-3.6/pygsl/statistics/short.so building 'errortest' extension C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-DSWIG_COBJECT_TYPES=1 -DDEBUG=1 -DPyGSL_SET_GSL_ERROR_HANDLER=1 -DNUMERIC=0 -UNDEBUG -I/usr/local/include -IInclude -I. -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c' cc: src/errortestmodule.c cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-x86_64-3.6/src/errortestmodule.o -L/usr/local/lib -L/usr/local/lib -lgsl -lgslcblas -lm -lpython3.6m -o build/lib.dragonfly-5.7-x86_64-3.6/pygsl/errortest.so building 'testing.solver' extension C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating build/temp.dragonfly-5.7-x86_64-3.6/testing creating build/temp.dragonfly-5.7-x86_64-3.6/testing/src creating build/temp.dragonfly-5.7-x86_64-3.6/testing/src/solvers compile options: '-DSWIG_COBJECT_TYPES=1 -DDEBUG=1 -DPyGSL_SET_GSL_ERROR_HANDLER=1 -DONEFILE=1 -DNUMERIC=0 -UNDEBUG -I/usr/local/include -IInclude -I. -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c' cc: testing/src/solvers/solvermodule.c cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-x86_64-3.6/testing/src/solvers/solvermodule.o -L/usr/local/lib -L/usr/local/lib -lgsl -lgslcblas -lm -lpython3.6m -o build/lib.dragonfly-5.7-x86_64-3.6/pygsl/testing/solver.so building 'testing._ufuncs' extension C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating build/temp.dragonfly-5.7-x86_64-3.6/testing/src/sf compile options: '-DSWIG_COBJECT_TYPES=1 -DDEBUG=1 -DPyGSL_SET_GSL_ERROR_HANDLER=1 -DNUMERIC=0 -UNDEBUG -I/usr/local/include -IInclude -I. -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c' cc: testing/src/sf/sfmodule_testing.c cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-x86_64-3.6/testing/src/sf/sfmodule_testing.o -L/usr/local/lib -L/usr/local/lib -lgsl -lgslcblas -lm -lpython3.6m -o build/lib.dragonfly-5.7-x86_64-3.6/pygsl/testing/_ufuncs.so SUCCEEDED 00:03:26 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- x===> Staging for py36-pygsl-2.3.0_4 ===> Generating temporary packing list /usr/local/lib/python3.6/site-packages/setuptools/version.py:1: UserWarning: Module errno was already imported from None, but /construction/math/py-pygsl/pygsl-2.3.0 is being added to sys.path import pkg_resources Building testing ufuncs! #31 extension modules running install running build running build_py running build_ext running install_lib creating /construction/math/py-pygsl/stage/usr/local/lib/python3.6 creating /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages creating /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/const.so -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/deriv.so -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/_transform.so -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/_multifit_robust.so -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/ieee.so -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/__block.so -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/__callback.so -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/_qrng.so -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/errno.so -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/errortest.so -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/_gslwrap.so -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/rng.so -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/_hankel.so -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/gslwrap.py -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl creating /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/testing copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/testing/_ufuncs.so -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/testing copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/testing/solver.so -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/testing copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/testing/__init__.py -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/testing copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/testing/complex.py -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/testing copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/testing/sf.py -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/testing copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/__init__.py -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/qrng.py -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/interpolation.py -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/interpolation2d.py -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/matrix_pierre.py -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/_interpolation2d_wrap.so -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/spline.py -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/permutation.py -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/multiroots.py -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/fit.py -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/monte.py -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/chebyshev.py -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/linalg.py -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/combination.py -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/errors.py -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/_version.py -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/math.py -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/fft.py -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/_generic_solver.py -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/odeiv2.py -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/blas.py -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/hankel.py -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/_callback.py -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/sum.py -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/integrate.py -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/odeiv.py -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/gsl_function.py -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/multifit_nlin.py -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl creating /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/gsl_dist copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/gsl_dist/gsl_features.py -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/gsl_dist copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/gsl_dist/__init__.py -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/gsl_dist copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/gsl_dist/gsl_CodeGenerator.py -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/gsl_dist copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/gsl_dist/swig_extension.py -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/gsl_dist copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/gsl_dist/gsl_Extension.py -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/gsl_dist copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/gsl_dist/gsl_Config.py -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/gsl_dist copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/gsl_dist/array_includes.py -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/gsl_dist copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/gsl_dist/gsl_CodeGenerator2.py -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/gsl_dist copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/gsl_dist/gsl_CodeGenerator3.py -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/gsl_dist copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/gsl_dist/gsl_Location.py -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/gsl_dist copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/gsl_dist/gsl_site_example.py -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/gsl_dist copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/roots.py -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/bspline.py -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/_numobj.py -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/eigen.py -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/minimize.py -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/vector.py -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/interpolation2d_wrap.py -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/multiminimize.py -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/multifit.py -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/siman.py -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/_block.py -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl creating /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/statistics copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/statistics/_stat.so -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/statistics copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/statistics/char.so -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/statistics copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/statistics/long.so -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/statistics copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/statistics/uchar.so -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/statistics copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/statistics/float.so -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/statistics copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/statistics/__init__.py -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/statistics copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/statistics/double.so -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/statistics copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/statistics/int.so -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/statistics copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/statistics/short.so -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/statistics copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/multifit_robust.py -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/poly.py -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/_poly.py -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/_siman.so -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/block.py -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/wavelet.py -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/_odeiv2.so -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/_sum.so -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/__poly.so -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/init.so -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/_bspline.so -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl copying build/lib.dragonfly-5.7-x86_64-3.6/pygsl/inittest.so -> /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl byte-compiling /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/gslwrap.py to gslwrap.cpython-36.pyc byte-compiling /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/testing/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/testing/complex.py to complex.cpython-36.pyc byte-compiling /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/testing/sf.py to sf.cpython-36.pyc byte-compiling /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/qrng.py to qrng.cpython-36.pyc byte-compiling /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/interpolation.py to interpolation.cpython-36.pyc byte-compiling /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/interpolation2d.py to interpolation2d.cpython-36.pyc byte-compiling /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/matrix_pierre.py to matrix_pierre.cpython-36.pyc byte-compiling /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/spline.py to spline.cpython-36.pyc byte-compiling /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/permutation.py to permutation.cpython-36.pyc byte-compiling /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/multiroots.py to multiroots.cpython-36.pyc byte-compiling /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/fit.py to fit.cpython-36.pyc byte-compiling /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/monte.py to monte.cpython-36.pyc byte-compiling /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/chebyshev.py to chebyshev.cpython-36.pyc byte-compiling /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/linalg.py to linalg.cpython-36.pyc byte-compiling /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/combination.py to combination.cpython-36.pyc byte-compiling /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/errors.py to errors.cpython-36.pyc byte-compiling /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/_version.py to _version.cpython-36.pyc byte-compiling /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/math.py to math.cpython-36.pyc byte-compiling /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/fft.py to fft.cpython-36.pyc byte-compiling /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/_generic_solver.py to _generic_solver.cpython-36.pyc byte-compiling /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/odeiv2.py to odeiv2.cpython-36.pyc byte-compiling /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/blas.py to blas.cpython-36.pyc byte-compiling /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/hankel.py to hankel.cpython-36.pyc byte-compiling /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/_callback.py to _callback.cpython-36.pyc byte-compiling /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/sum.py to sum.cpython-36.pyc byte-compiling /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/integrate.py to integrate.cpython-36.pyc byte-compiling /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/odeiv.py to odeiv.cpython-36.pyc byte-compiling /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/gsl_function.py to gsl_function.cpython-36.pyc byte-compiling /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/multifit_nlin.py to multifit_nlin.cpython-36.pyc byte-compiling /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/gsl_dist/gsl_features.py to gsl_features.cpython-36.pyc byte-compiling /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/gsl_dist/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/gsl_dist/gsl_CodeGenerator.py to gsl_CodeGenerator.cpython-36.pyc byte-compiling /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/gsl_dist/swig_extension.py to swig_extension.cpython-36.pyc byte-compiling /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/gsl_dist/gsl_Extension.py to gsl_Extension.cpython-36.pyc byte-compiling /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/gsl_dist/gsl_Config.py to gsl_Config.cpython-36.pyc byte-compiling /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/gsl_dist/array_includes.py to array_includes.cpython-36.pyc byte-compiling /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/gsl_dist/gsl_CodeGenerator2.py to gsl_CodeGenerator2.cpython-36.pyc byte-compiling /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/gsl_dist/gsl_CodeGenerator3.py to gsl_CodeGenerator3.cpython-36.pyc byte-compiling /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/gsl_dist/gsl_Location.py to gsl_Location.cpython-36.pyc byte-compiling /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/gsl_dist/gsl_site_example.py to gsl_site_example.cpython-36.pyc byte-compiling /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/roots.py to roots.cpython-36.pyc byte-compiling /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/bspline.py to bspline.cpython-36.pyc byte-compiling /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/_numobj.py to _numobj.cpython-36.pyc byte-compiling /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/eigen.py to eigen.cpython-36.pyc byte-compiling /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/minimize.py to minimize.cpython-36.pyc byte-compiling /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/vector.py to vector.cpython-36.pyc byte-compiling /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/interpolation2d_wrap.py to interpolation2d_wrap.cpython-36.pyc byte-compiling /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/multiminimize.py to multiminimize.cpython-36.pyc byte-compiling /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/multifit.py to multifit.cpython-36.pyc byte-compiling /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/siman.py to siman.cpython-36.pyc byte-compiling /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/_block.py to _block.cpython-36.pyc byte-compiling /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/statistics/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/multifit_robust.py to multifit_robust.cpython-36.pyc byte-compiling /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/poly.py to poly.cpython-36.pyc byte-compiling /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/_poly.py to _poly.cpython-36.pyc byte-compiling /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/block.py to block.cpython-36.pyc byte-compiling /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl/wavelet.py to wavelet.cpython-36.pyc writing byte-compilation script '/tmp/tmprr4wzt7o.py' /usr/local/bin/python3.6 /tmp/tmprr4wzt7o.py removing /tmp/tmprr4wzt7o.py running install_headers creating /construction/math/py-pygsl/stage/usr/local/include/python3.6m creating /construction/math/py-pygsl/stage/usr/local/include/python3.6m/pygsl copying Include/pygsl/pygsl_features_config.h -> /construction/math/py-pygsl/stage/usr/local/include/python3.6m/pygsl copying Include/pygsl/complex_helpers.h -> /construction/math/py-pygsl/stage/usr/local/include/python3.6m/pygsl copying Include/pygsl/block_helpers_numpy.h -> /construction/math/py-pygsl/stage/usr/local/include/python3.6m/pygsl copying Include/pygsl/transition.h -> /construction/math/py-pygsl/stage/usr/local/include/python3.6m/pygsl copying Include/pygsl/rng_helpers.h -> /construction/math/py-pygsl/stage/usr/local/include/python3.6m/pygsl copying Include/pygsl/intern.h -> /construction/math/py-pygsl/stage/usr/local/include/python3.6m/pygsl copying Include/pygsl/compilers.h -> /construction/math/py-pygsl/stage/usr/local/include/python3.6m/pygsl copying Include/pygsl/rng.h -> /construction/math/py-pygsl/stage/usr/local/include/python3.6m/pygsl copying Include/pygsl/errorno.h -> /construction/math/py-pygsl/stage/usr/local/include/python3.6m/pygsl copying Include/pygsl/block_helpers.h -> /construction/math/py-pygsl/stage/usr/local/include/python3.6m/pygsl copying Include/pygsl/function_helpers.h -> /construction/math/py-pygsl/stage/usr/local/include/python3.6m/pygsl copying Include/pygsl/error_helpers.h -> /construction/math/py-pygsl/stage/usr/local/include/python3.6m/pygsl copying Include/pygsl/capsuletrunk.h -> /construction/math/py-pygsl/stage/usr/local/include/python3.6m/pygsl copying Include/pygsl/solver.h -> /construction/math/py-pygsl/stage/usr/local/include/python3.6m/pygsl copying Include/pygsl/utils.h -> /construction/math/py-pygsl/stage/usr/local/include/python3.6m/pygsl copying Include/pygsl/arrayobject.h -> /construction/math/py-pygsl/stage/usr/local/include/python3.6m/pygsl copying Include/pygsl/general_helpers.h -> /construction/math/py-pygsl/stage/usr/local/include/python3.6m/pygsl copying Include/pygsl/pygsl.h -> /construction/math/py-pygsl/stage/usr/local/include/python3.6m/pygsl copying Include/pygsl/pygsl_features.h -> /construction/math/py-pygsl/stage/usr/local/include/python3.6m/pygsl copying Include/pygsl/string_helpers.h -> /construction/math/py-pygsl/stage/usr/local/include/python3.6m/pygsl copying Include/pygsl/profile.h -> /construction/math/py-pygsl/stage/usr/local/include/python3.6m/pygsl copying Include/pygsl/old_numpy_compat.h -> /construction/math/py-pygsl/stage/usr/local/include/python3.6m/pygsl running install_egg_info running egg_info writing pygsl.egg-info/PKG-INFO writing dependency_links to pygsl.egg-info/dependency_links.txt writing top-level names to pygsl.egg-info/top_level.txt reading manifest file 'pygsl.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'src/fftmodule.c' warning: no previously-included files found matching 'src/histogrammodule.c' warning: no previously-included files found matching 'gsl_dist/gsl_site.py' warning: no previously-included files found matching 'pygsl/_mlab.py' warning: no previously-included files found matching 'Include/pygsl/block_helpers_numarray.h' warning: no previously-included files found matching 'Include/pygsl/block_helpers_numeric.h' warning: no previously-included files found matching 'src/init/block_helpers_numarray.ic' warning: no previously-included files found matching 'src/init/block_helpers_numeric.ic' warning: no files found matching '*.pdf' under directory 'doc' warning: no files found matching 'MANIFEST' writing manifest file 'pygsl.egg-info/SOURCES.txt' Copying pygsl.egg-info to /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages/pygsl-2.3.0-py3.6.egg-info running install_scripts writing list of installed files to '/construction/math/py-pygsl/.PLIST.pymodtmp' /usr/bin/find /construction/math/py-pygsl/stage/usr/local/lib/python3.6/site-packages -name '*.so' -exec /usr/bin/strip {} + ===> Creating unique files: Move MAN files needing SUFFIX ===> Creating unique files: Move files needing SUFFIX ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Error: /usr/local/lib/python3.6/site-packages/pygsl/__block.so is linked to /usr/local/lib/libintl.so.8 from devel/gettext-runtime but it is not declared as a dependency Warning: you need USES+=gettext-runtime Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:15 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- x====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- x===> Building package for py36-pygsl-2.3.0_4 file sizes/checksums [234]: 0% file sizes/checksums [234]: 42% file sizes/checksums [234]: 85% file sizes/checksums [234]: 100% packing files [234]: 0% packing files [234]: 42% packing files [234]: 85% packing files [234]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:01 TOTAL TIME 00:06:20