------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/metis-5.1.0_8.tgz Message from metis-5.1.0_8: ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Installing /packages/All/indexinfo-0.3.1.tgz Installing /packages/All/gmp-6.1.2_1.tgz Installing /packages/All/mpfr-4.0.2.tgz Installing /packages/All/mpc-1.1.0_2.tgz Installing /packages/All/gettext-runtime-0.20.1.tgz Installing /packages/All/binutils-2.32_1,1.tgz Installing /packages/All/gcc8-8.3.0_3.tgz Message from gcc8-8.3.0_3: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/blas-3.5.0_6.tgz Installing /packages/All/lapack-3.5.0_8.tgz Installing /packages/All/openblas-0.2.20_10,1.tgz Installing /packages/All/suitesparse-5.2.0_4.tgz Installing /packages/All/expat-2.2.6_1.tgz Installing /packages/All/libffi-3.2.1_3.tgz Installing /packages/All/ncurses-6.1.20190525.tgz Installing /packages/All/readline-8.0.0.tgz Installing /packages/All/openssl-1.0.2s,1.tgz Message from openssl-1.0.2s,1: Edit /usr/local/openssl/openssl.cnf to fit your needs. Installing /packages/All/python36-3.6.9.tgz Message from python36-3.6.9: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py36-gdbm databases/py-gdbm@py36 py36-sqlite3 databases/py-sqlite3@py36 py36-tkinter x11-toolkits/py-tkinter@py36 =========================================================================== Installing /packages/All/py36-setuptools-41.0.1.tgz Installing /packages/All/py36-numpy-1.16.4_1,1.tgz Installing /packages/All/pciids-20190725.tgz Installing /packages/All/libpciaccess-0.16.tgz Installing /packages/All/libxml2-2.9.9.tgz Installing /packages/All/hwloc-1.11.11.tgz Installing /packages/All/mpich-3.2.1_5.tgz Message from mpich-3.2.1_5: ===> NOTICE: The mpich port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Installing /packages/All/python27-2.7.16_1.tgz Message from python27-2.7.16_1: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter =========================================================================== Installing /packages/All/libXau-1.0.9.tgz Installing /packages/All/xorgproto-2019.1.tgz Installing /packages/All/libXdmcp-1.1.3.tgz Installing /packages/All/libpthread-stubs-0.4.tgz Installing /packages/All/libxcb-1.13.1.tgz Installing /packages/All/libX11-1.6.8,1.tgz Installing /packages/All/PETSc-3.10.2_3.tgz SUCCEEDED 00:00:14 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- x SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- x===> Fetching all distfiles required by py36-petsc4py-3.10.0_2 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- x===> Fetching all distfiles required by py36-petsc4py-3.10.0_2 for building => SHA256 Checksum OK for petsc4py-3.10.0.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- x===> Fetching all distfiles required by py36-petsc4py-3.10.0_2 for building ===> Extracting for py36-petsc4py-3.10.0_2 => SHA256 Checksum OK for petsc4py-3.10.0.tar.gz. Extracted Memory Use: 18.27M SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- x===> Patching for py36-petsc4py-3.10.0_2 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- x===> Configuring for py36-petsc4py-3.10.0_2 running config ---------------------------------------------------------------------- PETSC_DIR: /usr/local ---------------------------------------------------------------------- PETSC_ARCH: * scalar-type: real * precision: double * language: CONLY * compiler: /usr/local/bin/mpicc * linker: /usr/local/bin/mpicc ---------------------------------------------------------------------- SUCCEEDED 00:00:02 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- x===> Building for py36-petsc4py-3.10.0_2 running build running build_src running build_py creating build creating build/lib.dragonfly-5.7-x86_64-3.6 creating build/lib.dragonfly-5.7-x86_64-3.6/petsc4py copying src/__main__.py -> build/lib.dragonfly-5.7-x86_64-3.6/petsc4py copying src/__init__.py -> build/lib.dragonfly-5.7-x86_64-3.6/petsc4py copying src/PETSc.py -> build/lib.dragonfly-5.7-x86_64-3.6/petsc4py creating build/lib.dragonfly-5.7-x86_64-3.6/petsc4py/lib copying src/lib/__init__.py -> build/lib.dragonfly-5.7-x86_64-3.6/petsc4py/lib creating build/lib.dragonfly-5.7-x86_64-3.6/petsc4py/include creating build/lib.dragonfly-5.7-x86_64-3.6/petsc4py/include/petsc4py copying src/include/petsc4py/petsc4py.PETSc_api.h -> build/lib.dragonfly-5.7-x86_64-3.6/petsc4py/include/petsc4py copying src/include/petsc4py/petsc4py.PETSc.h -> build/lib.dragonfly-5.7-x86_64-3.6/petsc4py/include/petsc4py copying src/include/petsc4py/petsc4py.h -> build/lib.dragonfly-5.7-x86_64-3.6/petsc4py/include/petsc4py copying src/include/petsc4py/numpy.h -> build/lib.dragonfly-5.7-x86_64-3.6/petsc4py/include/petsc4py copying src/include/petsc4py/petsc4py.i -> build/lib.dragonfly-5.7-x86_64-3.6/petsc4py/include/petsc4py copying src/include/petsc4py/PETSc.pxd -> build/lib.dragonfly-5.7-x86_64-3.6/petsc4py/include/petsc4py copying src/include/petsc4py/__init__.pxd -> build/lib.dragonfly-5.7-x86_64-3.6/petsc4py/include/petsc4py copying src/include/petsc4py/__init__.pyx -> build/lib.dragonfly-5.7-x86_64-3.6/petsc4py/include/petsc4py copying src/PETSc.pxd -> build/lib.dragonfly-5.7-x86_64-3.6/petsc4py copying src/lib/petsc.cfg -> build/lib.dragonfly-5.7-x86_64-3.6/petsc4py/lib running build_ext PETSC_DIR: /usr/local PETSC_ARCH: version: 3.10.2 release integer-size: 32-bit scalar-type: real precision: double language: CONLY compiler: /usr/local/bin/mpicc linker: /usr/local/bin/mpicc building 'PETSc' extension creating build/temp.dragonfly-5.7-x86_64-3.6 creating build/temp.dragonfly-5.7-x86_64-3.6/src /usr/local/bin/mpicc -pipe -O2 -fno-strict-aliasing -msse2 -fPIC -fPIC -pipe -O2 -fno-strict-aliasing -DPETSC_DIR=/usr/local -I/usr/local/include -Isrc/include -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c src/PETSc.c -o build/temp.dragonfly-5.7-x86_64-3.6/src/PETSc.o /usr/local/bin/mpicc -pipe -O2 -fno-strict-aliasing -msse2 -fPIC -fPIC -pipe -O2 -fno-strict-aliasing -DPETSC_DIR=/usr/local -I/usr/local/include -Isrc/include -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c src/libpetsc4py.c -o build/temp.dragonfly-5.7-x86_64-3.6/src/libpetsc4py.o /usr/local/bin/mpicc /usr/local/lib/libmpi.so -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -pipe -O2 -fno-strict-aliasing -msse2 -fPIC -shared build/temp.dragonfly-5.7-x86_64-3.6/src/PETSc.o build/temp.dragonfly-5.7-x86_64-3.6/src/libpetsc4py.o -L/usr/local/lib -L/usr/local/lib -R/usr/local/lib -lpetsc -lpython3.6m -o build/lib.dragonfly-5.7-x86_64-3.6/petsc4py/lib/PETSc.so writing build/lib.dragonfly-5.7-x86_64-3.6/petsc4py/lib/petsc.cfg SUCCEEDED 00:03:55 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- x===> Staging for py36-petsc4py-3.10.0_2 ===> Generating temporary packing list running install running build running build_src running build_py running build_ext PETSC_DIR: /usr/local PETSC_ARCH: version: 3.10.2 release integer-size: 32-bit scalar-type: real precision: double language: CONLY compiler: /usr/local/bin/mpicc linker: /usr/local/bin/mpicc writing build/lib.dragonfly-5.7-x86_64-3.6/petsc4py/lib/petsc.cfg running install_lib creating /construction/math/py-petsc4py/stage/usr/local/lib/python3.6 creating /construction/math/py-petsc4py/stage/usr/local/lib/python3.6/site-packages creating /construction/math/py-petsc4py/stage/usr/local/lib/python3.6/site-packages/petsc4py creating /construction/math/py-petsc4py/stage/usr/local/lib/python3.6/site-packages/petsc4py/lib copying build/lib.dragonfly-5.7-x86_64-3.6/petsc4py/lib/petsc.cfg -> /construction/math/py-petsc4py/stage/usr/local/lib/python3.6/site-packages/petsc4py/lib copying build/lib.dragonfly-5.7-x86_64-3.6/petsc4py/lib/__init__.py -> /construction/math/py-petsc4py/stage/usr/local/lib/python3.6/site-packages/petsc4py/lib copying build/lib.dragonfly-5.7-x86_64-3.6/petsc4py/lib/PETSc.so -> /construction/math/py-petsc4py/stage/usr/local/lib/python3.6/site-packages/petsc4py/lib copying build/lib.dragonfly-5.7-x86_64-3.6/petsc4py/__init__.py -> /construction/math/py-petsc4py/stage/usr/local/lib/python3.6/site-packages/petsc4py copying build/lib.dragonfly-5.7-x86_64-3.6/petsc4py/PETSc.py -> /construction/math/py-petsc4py/stage/usr/local/lib/python3.6/site-packages/petsc4py copying build/lib.dragonfly-5.7-x86_64-3.6/petsc4py/PETSc.pxd -> /construction/math/py-petsc4py/stage/usr/local/lib/python3.6/site-packages/petsc4py creating /construction/math/py-petsc4py/stage/usr/local/lib/python3.6/site-packages/petsc4py/include creating /construction/math/py-petsc4py/stage/usr/local/lib/python3.6/site-packages/petsc4py/include/petsc4py copying build/lib.dragonfly-5.7-x86_64-3.6/petsc4py/include/petsc4py/PETSc.pxd -> /construction/math/py-petsc4py/stage/usr/local/lib/python3.6/site-packages/petsc4py/include/petsc4py copying build/lib.dragonfly-5.7-x86_64-3.6/petsc4py/include/petsc4py/petsc4py.h -> /construction/math/py-petsc4py/stage/usr/local/lib/python3.6/site-packages/petsc4py/include/petsc4py copying build/lib.dragonfly-5.7-x86_64-3.6/petsc4py/include/petsc4py/petsc4py.PETSc.h -> /construction/math/py-petsc4py/stage/usr/local/lib/python3.6/site-packages/petsc4py/include/petsc4py copying build/lib.dragonfly-5.7-x86_64-3.6/petsc4py/include/petsc4py/__init__.pxd -> /construction/math/py-petsc4py/stage/usr/local/lib/python3.6/site-packages/petsc4py/include/petsc4py copying build/lib.dragonfly-5.7-x86_64-3.6/petsc4py/include/petsc4py/petsc4py.PETSc_api.h -> /construction/math/py-petsc4py/stage/usr/local/lib/python3.6/site-packages/petsc4py/include/petsc4py copying build/lib.dragonfly-5.7-x86_64-3.6/petsc4py/include/petsc4py/petsc4py.i -> /construction/math/py-petsc4py/stage/usr/local/lib/python3.6/site-packages/petsc4py/include/petsc4py copying build/lib.dragonfly-5.7-x86_64-3.6/petsc4py/include/petsc4py/__init__.pyx -> /construction/math/py-petsc4py/stage/usr/local/lib/python3.6/site-packages/petsc4py/include/petsc4py copying build/lib.dragonfly-5.7-x86_64-3.6/petsc4py/include/petsc4py/numpy.h -> /construction/math/py-petsc4py/stage/usr/local/lib/python3.6/site-packages/petsc4py/include/petsc4py copying build/lib.dragonfly-5.7-x86_64-3.6/petsc4py/__main__.py -> /construction/math/py-petsc4py/stage/usr/local/lib/python3.6/site-packages/petsc4py byte-compiling /construction/math/py-petsc4py/stage/usr/local/lib/python3.6/site-packages/petsc4py/lib/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/math/py-petsc4py/stage/usr/local/lib/python3.6/site-packages/petsc4py/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/math/py-petsc4py/stage/usr/local/lib/python3.6/site-packages/petsc4py/PETSc.py to PETSc.cpython-36.pyc byte-compiling /construction/math/py-petsc4py/stage/usr/local/lib/python3.6/site-packages/petsc4py/__main__.py to __main__.cpython-36.pyc writing byte-compilation script '/tmp/tmpimbgucmw.py' /usr/local/bin/python3.6 /tmp/tmpimbgucmw.py removing /tmp/tmpimbgucmw.py running install_egg_info running egg_info writing petsc4py.egg-info/PKG-INFO writing dependency_links to petsc4py.egg-info/dependency_links.txt writing requirements to petsc4py.egg-info/requires.txt writing top-level names to petsc4py.egg-info/top_level.txt reading manifest file 'petsc4py.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'petsc4py.egg-info/SOURCES.txt' Copying petsc4py.egg-info to /construction/math/py-petsc4py/stage/usr/local/lib/python3.6/site-packages/petsc4py-3.10.0-py3.6.egg-info running install_scripts writing list of installed files to '/construction/math/py-petsc4py/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Error: /usr/local/lib/python3.6/site-packages/petsc4py/lib/PETSc.so is linked to /usr/local/lib/gcc8/libgfortran.so.5 from lang/gcc8 but it is not declared as a dependency Error: /usr/local/lib/python3.6/site-packages/petsc4py/lib/PETSc.so is linked to /usr/local/lib/gcc8/libgcc_s.so.1 from lang/gcc8 but it is not declared as a dependency Error: /usr/local/lib/python3.6/site-packages/petsc4py/lib/PETSc.so is linked to /usr/local/lib/gcc8/libquadmath.so.0 from lang/gcc8 but it is not declared as a dependency Error: /usr/local/lib/python3.6/site-packages/petsc4py/lib/PETSc.so is linked to /usr/local/lib/liblapack.so.4 from math/lapack but it is not declared as a dependency Warning: you need LIB_DEPENDS+=liblapack.so:math/lapack Error: /usr/local/lib/python3.6/site-packages/petsc4py/lib/PETSc.so is linked to /usr/local/lib/libblas.so.2 from math/blas but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libblas.so:math/blas Error: /usr/local/lib/python3.6/site-packages/petsc4py/lib/PETSc.so is linked to /usr/local/lib/libX11.so.6 from x11/libX11 but it is not declared as a dependency Warning: you need USE_XORG+=x11 Error: /usr/local/lib/python3.6/site-packages/petsc4py/lib/PETSc.so is linked to /usr/local/lib/libintl.so.8 from devel/gettext-runtime but it is not declared as a dependency Warning: you need USES+=gettext-runtime Error: /usr/local/lib/python3.6/site-packages/petsc4py/lib/PETSc.so is linked to /usr/local/lib/libxcb.so.1 from x11/libxcb but it is not declared as a dependency Warning: you need USE_XORG+=xcb Error: /usr/local/lib/python3.6/site-packages/petsc4py/lib/PETSc.so is linked to /usr/local/lib/libXau.so.6 from x11/libXau but it is not declared as a dependency Warning: you need USE_XORG+=xau Error: /usr/local/lib/python3.6/site-packages/petsc4py/lib/PETSc.so is linked to /usr/local/lib/libXdmcp.so.6 from x11/libXdmcp but it is not declared as a dependency Warning: you need USE_XORG+=xdmcp Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:06 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- x====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- x===> Building package for py36-petsc4py-3.10.0_2 file sizes/checksums [29]: 0% file sizes/checksums [29]: 100% packing files [29]: 0% packing files [29]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:01 TOTAL TIME 00:04:22