------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/metis-5.1.0_8.txz Installing /packages/All/tbb-2020.1.txz Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/gmp-6.2.0.txz Installing /packages/All/mpfr-4.0.2.txz Installing /packages/All/mpc-1.1.0_2.txz UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/gettext-runtime-0.20.1.txz Installing /packages/All/binutils-2.33.1_2,1.txz Installing /packages/All/gcc8-8.4.0.txz ===== Message from gcc8-8.4.0: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/openblas-0.3.7_2,1.txz Installing /packages/All/suitesparse-5.4.0_5.txz Installing /packages/All/expat-2.2.8.txz Installing /packages/All/libffi-3.2.1_3.txz Installing /packages/All/ncurses-6.1.20190525.txz Installing /packages/All/readline-8.0.4.txz Installing /packages/All/openssl-1.1.1d,1.txz Installing /packages/All/python37-3.7.6.txz ===== Message from python37-3.7.6: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py37-gdbm databases/py-gdbm@py37 py37-sqlite3 databases/py-sqlite3@py37 py37-tkinter x11-toolkits/py-tkinter@py37 Installing /packages/All/py37-setuptools-44.0.0.txz Installing /packages/All/py37-numpy-1.16.5_4,1.txz Installing /packages/All/py37-cython-0.29.15.txz Installing /packages/All/py37-joblib-0.13.0.txz Installing /packages/All/py37-scipy-1.2.2_1.txz Installing /packages/All/py37-scikit-learn-0.22_1.txz Installing /packages/All/py37-six-1.14.0.txz UNFLAVORED devel/binutils -> use devel/binutils@native SUCCEEDED 00:00:33 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> py37-hdbscan-0.8.24 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> py37-hdbscan-0.8.24 depends on file: /usr/local/sbin/pkg - found => hdbscan-0.8.24.tar.gz doesn't seem to exist in /distfiles/. => Attempting to fetch https://files.pythonhosted.org/packages/source/h/hdbscan/hdbscan-0.8.24.tar.gz hdbscan-0.8.24.tar.gz 0% of 4254 kB 0 Bps hdbscan-0.8.24.tar.gz 4254 kB 42 MBps 00s ===> Fetching all distfiles required by py37-hdbscan-0.8.24 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> py37-hdbscan-0.8.24 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py37-hdbscan-0.8.24 for building => SHA256 Checksum OK for hdbscan-0.8.24.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> py37-hdbscan-0.8.24 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py37-hdbscan-0.8.24 for building ===> Extracting for py37-hdbscan-0.8.24 => SHA256 Checksum OK for hdbscan-0.8.24.tar.gz. Extracted Memory Use: 9.26M SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for py37-hdbscan-0.8.24 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> py37-hdbscan-0.8.24 depends on package: py37-numpy>=1.15,1<1.19,1 - found ===> py37-hdbscan-0.8.24 depends on executable: cython-3.7 - found ===> py37-hdbscan-0.8.24 depends on package: py37-setuptools>0 - found ===> py37-hdbscan-0.8.24 depends on file: /usr/local/bin/python3.7 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> py37-hdbscan-0.8.24 depends on package: py37-numpy>=1.15,1<1.19,1 - found ===> py37-hdbscan-0.8.24 depends on executable: cython-3.7 - found ===> py37-hdbscan-0.8.24 depends on package: py37-setuptools>0 - found ===> py37-hdbscan-0.8.24 depends on file: /usr/local/bin/python3.7 - found ===> Configuring for py37-hdbscan-0.8.24 running config SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for py37-hdbscan-0.8.24 running build running build_py creating build creating build/lib.dragonfly-5.9-x86_64-3.7 creating build/lib.dragonfly-5.9-x86_64-3.7/hdbscan copying hdbscan/hdbscan_.py -> build/lib.dragonfly-5.9-x86_64-3.7/hdbscan copying hdbscan/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/hdbscan copying hdbscan/plots.py -> build/lib.dragonfly-5.9-x86_64-3.7/hdbscan copying hdbscan/validity.py -> build/lib.dragonfly-5.9-x86_64-3.7/hdbscan copying hdbscan/prediction.py -> build/lib.dragonfly-5.9-x86_64-3.7/hdbscan copying hdbscan/robust_single_linkage_.py -> build/lib.dragonfly-5.9-x86_64-3.7/hdbscan creating build/lib.dragonfly-5.9-x86_64-3.7/hdbscan/tests copying hdbscan/tests/test_rsl.py -> build/lib.dragonfly-5.9-x86_64-3.7/hdbscan/tests copying hdbscan/tests/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/hdbscan/tests copying hdbscan/tests/test_hdbscan.py -> build/lib.dragonfly-5.9-x86_64-3.7/hdbscan/tests running build_ext cythoning hdbscan/_hdbscan_tree.pyx to hdbscan/_hdbscan_tree.c /usr/local/lib/python3.7/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /construction/math/py-hdbscan/hdbscan-0.8.24/hdbscan/_hdbscan_tree.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning hdbscan/_hdbscan_linkage.pyx to hdbscan/_hdbscan_linkage.c /usr/local/lib/python3.7/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /construction/math/py-hdbscan/hdbscan-0.8.24/hdbscan/_hdbscan_linkage.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning hdbscan/_hdbscan_boruvka.pyx to hdbscan/_hdbscan_boruvka.c /usr/local/lib/python3.7/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /construction/math/py-hdbscan/hdbscan-0.8.24/hdbscan/_hdbscan_boruvka.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning hdbscan/_hdbscan_reachability.pyx to hdbscan/_hdbscan_reachability.c /usr/local/lib/python3.7/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /construction/math/py-hdbscan/hdbscan-0.8.24/hdbscan/_hdbscan_reachability.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning hdbscan/_prediction_utils.pyx to hdbscan/_prediction_utils.c /usr/local/lib/python3.7/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /construction/math/py-hdbscan/hdbscan-0.8.24/hdbscan/_prediction_utils.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning hdbscan/dist_metrics.pyx to hdbscan/dist_metrics.c /usr/local/lib/python3.7/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /construction/math/py-hdbscan/hdbscan-0.8.24/hdbscan/dist_metrics.pxd tree = Parsing.p_module(s, pxd, full_module_name) building 'hdbscan._hdbscan_tree' extension creating build/temp.dragonfly-5.9-x86_64-3.7 creating build/temp.dragonfly-5.9-x86_64-3.7/hdbscan cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -c hdbscan/_hdbscan_tree.c -o build/temp.dragonfly-5.9-x86_64-3.7/hdbscan/_hdbscan_tree.o In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from hdbscan/_hdbscan_tree.c:598: /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.9-x86_64-3.7/hdbscan/_hdbscan_tree.o -L/usr/local/lib -lpython3.7m -o build/lib.dragonfly-5.9-x86_64-3.7/hdbscan/_hdbscan_tree.so building 'hdbscan._hdbscan_linkage' extension cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -c hdbscan/_hdbscan_linkage.c -o build/temp.dragonfly-5.9-x86_64-3.7/hdbscan/_hdbscan_linkage.o In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from hdbscan/_hdbscan_linkage.c:598: /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.9-x86_64-3.7/hdbscan/_hdbscan_linkage.o -L/usr/local/lib -lpython3.7m -o build/lib.dragonfly-5.9-x86_64-3.7/hdbscan/_hdbscan_linkage.so building 'hdbscan._hdbscan_boruvka' extension cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -c hdbscan/_hdbscan_boruvka.c -o build/temp.dragonfly-5.9-x86_64-3.7/hdbscan/_hdbscan_boruvka.o In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from hdbscan/_hdbscan_boruvka.c:598: /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.9-x86_64-3.7/hdbscan/_hdbscan_boruvka.o -L/usr/local/lib -lpython3.7m -o build/lib.dragonfly-5.9-x86_64-3.7/hdbscan/_hdbscan_boruvka.so building 'hdbscan._hdbscan_reachability' extension cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -c hdbscan/_hdbscan_reachability.c -o build/temp.dragonfly-5.9-x86_64-3.7/hdbscan/_hdbscan_reachability.o In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from hdbscan/_hdbscan_reachability.c:598: /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.9-x86_64-3.7/hdbscan/_hdbscan_reachability.o -L/usr/local/lib -lpython3.7m -o build/lib.dragonfly-5.9-x86_64-3.7/hdbscan/_hdbscan_reachability.so building 'hdbscan._prediction_utils' extension cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -c hdbscan/_prediction_utils.c -o build/temp.dragonfly-5.9-x86_64-3.7/hdbscan/_prediction_utils.o In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from hdbscan/_prediction_utils.c:598: /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.9-x86_64-3.7/hdbscan/_prediction_utils.o -L/usr/local/lib -lpython3.7m -o build/lib.dragonfly-5.9-x86_64-3.7/hdbscan/_prediction_utils.so building 'hdbscan.dist_metrics' extension cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -c hdbscan/dist_metrics.c -o build/temp.dragonfly-5.9-x86_64-3.7/hdbscan/dist_metrics.o In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from hdbscan/dist_metrics.c:598: /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ hdbscan/dist_metrics.c: In function '__pyx_f_7hdbscan_12dist_metrics_18SEuclideanDistance_dist': hdbscan/dist_metrics.c:7089:75: warning: passing argument 1 of '__pyx_f_7hdbscan_12dist_metrics_18SEuclideanDistance_rdist' from incompatible pointer type [-Wincompatible-pointer-types] __pyx_t_1 = __pyx_f_7hdbscan_12dist_metrics_18SEuclideanDistance_rdist(((struct __pyx_obj_7hdbscan_12dist_metrics_DistanceMetric *)__pyx_v_self), __pyx_v_x1, __pyx_v_x2, __pyx_v_size); if (unlikely(__pyx_t_1 == ((__pyx_t_7hdbscan_12dist_metrics_DTYPE_t)-1.0))) __PYX_ERR(1, 474, __pyx_L1_error) ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hdbscan/dist_metrics.c:6892:168: note: expected 'struct __pyx_obj_7hdbscan_12dist_metrics_SEuclideanDistance *' but argument is of type 'struct __pyx_obj_7hdbscan_12dist_metrics_DistanceMetric *' static __pyx_t_7hdbscan_12dist_metrics_DTYPE_t __pyx_f_7hdbscan_12dist_metrics_18SEuclideanDistance_rdist(struct __pyx_obj_7hdbscan_12dist_metrics_SEuclideanDistance *__pyx_v_self, __pyx_t_7hdbscan_12dist_metrics_DTYPE_t *__pyx_v_x1, __pyx_t_7hdbscan_12dist_metrics_DTYPE_t *__pyx_v_x2, __pyx_t_7hdbscan_12dist_metrics_ITYPE_t __pyx_v_size) { ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ hdbscan/dist_metrics.c: In function '__pyx_f_7hdbscan_12dist_metrics_17MinkowskiDistance_dist': hdbscan/dist_metrics.c:7850:74: warning: passing argument 1 of '__pyx_f_7hdbscan_12dist_metrics_17MinkowskiDistance_rdist' from incompatible pointer type [-Wincompatible-pointer-types] __pyx_t_1 = __pyx_f_7hdbscan_12dist_metrics_17MinkowskiDistance_rdist(((struct __pyx_obj_7hdbscan_12dist_metrics_DistanceMetric *)__pyx_v_self), __pyx_v_x1, __pyx_v_x2, __pyx_v_size); if (unlikely(__pyx_t_1 == ((__pyx_t_7hdbscan_12dist_metrics_DTYPE_t)-1.0))) __PYX_ERR(1, 563, __pyx_L1_error) ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hdbscan/dist_metrics.c:7769:166: note: expected 'struct __pyx_obj_7hdbscan_12dist_metrics_MinkowskiDistance *' but argument is of type 'struct __pyx_obj_7hdbscan_12dist_metrics_DistanceMetric *' static __pyx_t_7hdbscan_12dist_metrics_DTYPE_t __pyx_f_7hdbscan_12dist_metrics_17MinkowskiDistance_rdist(struct __pyx_obj_7hdbscan_12dist_metrics_MinkowskiDistance *__pyx_v_self, __pyx_t_7hdbscan_12dist_metrics_DTYPE_t *__pyx_v_x1, __pyx_t_7hdbscan_12dist_metrics_DTYPE_t *__pyx_v_x2, __pyx_t_7hdbscan_12dist_metrics_ITYPE_t __pyx_v_size) { ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ hdbscan/dist_metrics.c: In function '__pyx_f_7hdbscan_12dist_metrics_18WMinkowskiDistance_dist': hdbscan/dist_metrics.c:8530:75: warning: passing argument 1 of '__pyx_f_7hdbscan_12dist_metrics_18WMinkowskiDistance_rdist' from incompatible pointer type [-Wincompatible-pointer-types] __pyx_t_1 = __pyx_f_7hdbscan_12dist_metrics_18WMinkowskiDistance_rdist(((struct __pyx_obj_7hdbscan_12dist_metrics_DistanceMetric *)__pyx_v_self), __pyx_v_x1, __pyx_v_x2, __pyx_v_size); if (unlikely(__pyx_t_1 == ((__pyx_t_7hdbscan_12dist_metrics_DTYPE_t)-1.0))) __PYX_ERR(1, 622, __pyx_L1_error) ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hdbscan/dist_metrics.c:8343:168: note: expected 'struct __pyx_obj_7hdbscan_12dist_metrics_WMinkowskiDistance *' but argument is of type 'struct __pyx_obj_7hdbscan_12dist_metrics_DistanceMetric *' static __pyx_t_7hdbscan_12dist_metrics_DTYPE_t __pyx_f_7hdbscan_12dist_metrics_18WMinkowskiDistance_rdist(struct __pyx_obj_7hdbscan_12dist_metrics_WMinkowskiDistance *__pyx_v_self, __pyx_t_7hdbscan_12dist_metrics_DTYPE_t *__pyx_v_x1, __pyx_t_7hdbscan_12dist_metrics_DTYPE_t *__pyx_v_x2, __pyx_t_7hdbscan_12dist_metrics_ITYPE_t __pyx_v_size) { ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ hdbscan/dist_metrics.c: In function '__pyx_f_7hdbscan_12dist_metrics_19MahalanobisDistance_dist': hdbscan/dist_metrics.c:9341:76: warning: passing argument 1 of '__pyx_f_7hdbscan_12dist_metrics_19MahalanobisDistance_rdist' from incompatible pointer type [-Wincompatible-pointer-types] __pyx_t_1 = __pyx_f_7hdbscan_12dist_metrics_19MahalanobisDistance_rdist(((struct __pyx_obj_7hdbscan_12dist_metrics_DistanceMetric *)__pyx_v_self), __pyx_v_x1, __pyx_v_x2, __pyx_v_size); if (unlikely(__pyx_t_1 == ((__pyx_t_7hdbscan_12dist_metrics_DTYPE_t)-1.0))) __PYX_ERR(1, 692, __pyx_L1_error) ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hdbscan/dist_metrics.c:9096:170: note: expected 'struct __pyx_obj_7hdbscan_12dist_metrics_MahalanobisDistance *' but argument is of type 'struct __pyx_obj_7hdbscan_12dist_metrics_DistanceMetric *' static __pyx_t_7hdbscan_12dist_metrics_DTYPE_t __pyx_f_7hdbscan_12dist_metrics_19MahalanobisDistance_rdist(struct __pyx_obj_7hdbscan_12dist_metrics_MahalanobisDistance *__pyx_v_self, __pyx_t_7hdbscan_12dist_metrics_DTYPE_t *__pyx_v_x1, __pyx_t_7hdbscan_12dist_metrics_DTYPE_t *__pyx_v_x2, __pyx_t_7hdbscan_12dist_metrics_ITYPE_t __pyx_v_size) { ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.9-x86_64-3.7/hdbscan/dist_metrics.o -L/usr/local/lib -lpython3.7m -o build/lib.dragonfly-5.9-x86_64-3.7/hdbscan/dist_metrics.so SUCCEEDED 00:01:12 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> py37-hdbscan-0.8.24 depends on package: py37-joblib>=0 - found ===> py37-hdbscan-0.8.24 depends on package: py37-numpy>=1.15,1<1.19,1 - found ===> py37-hdbscan-0.8.24 depends on package: py37-scikit-learn>=0.17 - found ===> py37-hdbscan-0.8.24 depends on package: py37-scipy>=0.9 - found ===> py37-hdbscan-0.8.24 depends on package: py37-six>=0 - found ===> py37-hdbscan-0.8.24 depends on package: py37-setuptools>0 - found ===> py37-hdbscan-0.8.24 depends on file: /usr/local/bin/python3.7 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for py37-hdbscan-0.8.24 ===> py37-hdbscan-0.8.24 depends on package: py37-joblib>=0 - found ===> py37-hdbscan-0.8.24 depends on package: py37-numpy>=1.15,1<1.19,1 - found ===> py37-hdbscan-0.8.24 depends on package: py37-scikit-learn>=0.17 - found ===> py37-hdbscan-0.8.24 depends on package: py37-scipy>=0.9 - found ===> py37-hdbscan-0.8.24 depends on package: py37-six>=0 - found ===> py37-hdbscan-0.8.24 depends on package: py37-setuptools>0 - found ===> py37-hdbscan-0.8.24 depends on file: /usr/local/bin/python3.7 - found ===> Generating temporary packing list running install running build running build_py running build_ext skipping 'hdbscan/_hdbscan_tree.c' Cython extension (up-to-date) skipping 'hdbscan/_hdbscan_linkage.c' Cython extension (up-to-date) skipping 'hdbscan/_hdbscan_boruvka.c' Cython extension (up-to-date) skipping 'hdbscan/_hdbscan_reachability.c' Cython extension (up-to-date) skipping 'hdbscan/_prediction_utils.c' Cython extension (up-to-date) skipping 'hdbscan/dist_metrics.c' Cython extension (up-to-date) running install_lib creating /construction/math/py-hdbscan/stage/usr/local/lib/python3.7 creating /construction/math/py-hdbscan/stage/usr/local/lib/python3.7/site-packages creating /construction/math/py-hdbscan/stage/usr/local/lib/python3.7/site-packages/hdbscan copying build/lib.dragonfly-5.9-x86_64-3.7/hdbscan/dist_metrics.so -> /construction/math/py-hdbscan/stage/usr/local/lib/python3.7/site-packages/hdbscan copying build/lib.dragonfly-5.9-x86_64-3.7/hdbscan/_prediction_utils.so -> /construction/math/py-hdbscan/stage/usr/local/lib/python3.7/site-packages/hdbscan copying build/lib.dragonfly-5.9-x86_64-3.7/hdbscan/_hdbscan_reachability.so -> /construction/math/py-hdbscan/stage/usr/local/lib/python3.7/site-packages/hdbscan copying build/lib.dragonfly-5.9-x86_64-3.7/hdbscan/plots.py -> /construction/math/py-hdbscan/stage/usr/local/lib/python3.7/site-packages/hdbscan copying build/lib.dragonfly-5.9-x86_64-3.7/hdbscan/robust_single_linkage_.py -> /construction/math/py-hdbscan/stage/usr/local/lib/python3.7/site-packages/hdbscan copying build/lib.dragonfly-5.9-x86_64-3.7/hdbscan/validity.py -> /construction/math/py-hdbscan/stage/usr/local/lib/python3.7/site-packages/hdbscan copying build/lib.dragonfly-5.9-x86_64-3.7/hdbscan/__init__.py -> /construction/math/py-hdbscan/stage/usr/local/lib/python3.7/site-packages/hdbscan creating /construction/math/py-hdbscan/stage/usr/local/lib/python3.7/site-packages/hdbscan/tests copying build/lib.dragonfly-5.9-x86_64-3.7/hdbscan/tests/__init__.py -> /construction/math/py-hdbscan/stage/usr/local/lib/python3.7/site-packages/hdbscan/tests copying build/lib.dragonfly-5.9-x86_64-3.7/hdbscan/tests/test_hdbscan.py -> /construction/math/py-hdbscan/stage/usr/local/lib/python3.7/site-packages/hdbscan/tests copying build/lib.dragonfly-5.9-x86_64-3.7/hdbscan/tests/test_rsl.py -> /construction/math/py-hdbscan/stage/usr/local/lib/python3.7/site-packages/hdbscan/tests copying build/lib.dragonfly-5.9-x86_64-3.7/hdbscan/hdbscan_.py -> /construction/math/py-hdbscan/stage/usr/local/lib/python3.7/site-packages/hdbscan copying build/lib.dragonfly-5.9-x86_64-3.7/hdbscan/prediction.py -> /construction/math/py-hdbscan/stage/usr/local/lib/python3.7/site-packages/hdbscan copying build/lib.dragonfly-5.9-x86_64-3.7/hdbscan/_hdbscan_linkage.so -> /construction/math/py-hdbscan/stage/usr/local/lib/python3.7/site-packages/hdbscan copying build/lib.dragonfly-5.9-x86_64-3.7/hdbscan/_hdbscan_boruvka.so -> /construction/math/py-hdbscan/stage/usr/local/lib/python3.7/site-packages/hdbscan copying build/lib.dragonfly-5.9-x86_64-3.7/hdbscan/_hdbscan_tree.so -> /construction/math/py-hdbscan/stage/usr/local/lib/python3.7/site-packages/hdbscan byte-compiling /construction/math/py-hdbscan/stage/usr/local/lib/python3.7/site-packages/hdbscan/plots.py to plots.cpython-37.pyc byte-compiling /construction/math/py-hdbscan/stage/usr/local/lib/python3.7/site-packages/hdbscan/robust_single_linkage_.py to robust_single_linkage_.cpython-37.pyc byte-compiling /construction/math/py-hdbscan/stage/usr/local/lib/python3.7/site-packages/hdbscan/validity.py to validity.cpython-37.pyc byte-compiling /construction/math/py-hdbscan/stage/usr/local/lib/python3.7/site-packages/hdbscan/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/math/py-hdbscan/stage/usr/local/lib/python3.7/site-packages/hdbscan/tests/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/math/py-hdbscan/stage/usr/local/lib/python3.7/site-packages/hdbscan/tests/test_hdbscan.py to test_hdbscan.cpython-37.pyc byte-compiling /construction/math/py-hdbscan/stage/usr/local/lib/python3.7/site-packages/hdbscan/tests/test_rsl.py to test_rsl.cpython-37.pyc byte-compiling /construction/math/py-hdbscan/stage/usr/local/lib/python3.7/site-packages/hdbscan/hdbscan_.py to hdbscan_.cpython-37.pyc byte-compiling /construction/math/py-hdbscan/stage/usr/local/lib/python3.7/site-packages/hdbscan/prediction.py to prediction.cpython-37.pyc writing byte-compilation script '/tmp/tmp92i2spwu.py' /usr/local/bin/python3.7 /tmp/tmp92i2spwu.py removing /tmp/tmp92i2spwu.py running install_data warning: install_data: setup script did not provide a directory for 'hdbscan/dist_metrics.pxd' -- installing right in '/construction/math/py-hdbscan/stage/usr/local' copying hdbscan/dist_metrics.pxd -> /construction/math/py-hdbscan/stage/usr/local running install_egg_info running egg_info writing hdbscan.egg-info/PKG-INFO writing dependency_links to hdbscan.egg-info/dependency_links.txt writing requirements to hdbscan.egg-info/requires.txt writing top-level names to hdbscan.egg-info/top_level.txt reading manifest file 'hdbscan.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'hdbscan.egg-info/SOURCES.txt' Copying hdbscan.egg-info to /construction/math/py-hdbscan/stage/usr/local/lib/python3.7/site-packages/hdbscan-0.8.24-py3.7.egg-info running install_scripts writing list of installed files to '/construction/math/py-hdbscan/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: 'lib/python3.7/site-packages/hdbscan/_hdbscan_linkage.so' is not stripped consider trying INSTALL_TARGET=install-strip or using ${STRIP_CMD} Warning: 'lib/python3.7/site-packages/hdbscan/dist_metrics.so' is not stripped consider trying INSTALL_TARGET=install-strip or using ${STRIP_CMD} Warning: 'lib/python3.7/site-packages/hdbscan/_prediction_utils.so' is not stripped consider trying INSTALL_TARGET=install-strip or using ${STRIP_CMD} Warning: 'lib/python3.7/site-packages/hdbscan/_hdbscan_reachability.so' is not stripped consider trying INSTALL_TARGET=install-strip or using ${STRIP_CMD} Warning: 'lib/python3.7/site-packages/hdbscan/_hdbscan_boruvka.so' is not stripped consider trying INSTALL_TARGET=install-strip or using ${STRIP_CMD} Warning: 'lib/python3.7/site-packages/hdbscan/_hdbscan_tree.so' is not stripped consider trying INSTALL_TARGET=install-strip or using ${STRIP_CMD} Error: /usr/local/lib/python3.7/site-packages/hdbscan/_hdbscan_boruvka.so is linked to /usr/local/lib/libintl.so.8 from devel/gettext-runtime but it is not declared as a dependency Warning: you need USES+=gettext-runtime Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:03 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for py37-hdbscan-0.8.24 file sizes/checksums [39]: 0% file sizes/checksums [39]: 100% packing files [39]: 0% packing files [39]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:02 TOTAL TIME 00:01:54