------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/expat-2.2.6_1.tgz Installing /packages/All/indexinfo-0.3.1.tgz Installing /packages/All/libffi-3.2.1_3.tgz Installing /packages/All/ncurses-6.1.20190525.tgz Installing /packages/All/readline-8.0.0.tgz Installing /packages/All/gettext-runtime-0.20.1.tgz Installing /packages/All/openssl-1.0.2s,1.tgz Message from openssl-1.0.2s,1: Edit /usr/local/openssl/openssl.cnf to fit your needs. Installing /packages/All/python36-3.6.9.tgz Message from python36-3.6.9: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py36-gdbm databases/py-gdbm@py36 py36-sqlite3 databases/py-sqlite3@py36 py36-tkinter x11-toolkits/py-tkinter@py36 =========================================================================== Installing /packages/All/py36-setuptools-41.0.1.tgz Installing /packages/All/metis-5.1.0_8.tgz Message from metis-5.1.0_8: ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Installing /packages/All/gmp-6.1.2_1.tgz Installing /packages/All/mpfr-4.0.2.tgz Installing /packages/All/mpc-1.1.0_2.tgz Installing /packages/All/binutils-2.32_1,1.tgz Installing /packages/All/gcc8-8.3.0_3.tgz Message from gcc8-8.3.0_3: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/blas-3.5.0_6.tgz Installing /packages/All/lapack-3.5.0_8.tgz Installing /packages/All/openblas-0.2.20_10,1.tgz Installing /packages/All/suitesparse-5.2.0_4.tgz Installing /packages/All/py36-numpy-1.16.4_1,1.tgz Installing /packages/All/py36-six-1.12.0.tgz SUCCEEDED 00:00:18 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- x===> Fetching all distfiles required by py36-GridDataFormats-0.5.0_1 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- x===> Fetching all distfiles required by py36-GridDataFormats-0.5.0_1 for building => SHA256 Checksum OK for MDAnalysis-GridDataFormats-0.5.0_GH0.tar.gz. SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- x===> Fetching all distfiles required by py36-GridDataFormats-0.5.0_1 for building ===> Extracting for py36-GridDataFormats-0.5.0_1 => SHA256 Checksum OK for MDAnalysis-GridDataFormats-0.5.0_GH0.tar.gz. Extracted Memory Use: 6.36M SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- x===> Patching for py36-GridDataFormats-0.5.0_1 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- x===> Configuring for py36-GridDataFormats-0.5.0_1 running config SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- x===> Building for py36-GridDataFormats-0.5.0_1 running build running build_py creating build creating build/lib creating build/lib/gridData copying gridData/CCP4.py -> build/lib/gridData copying gridData/gOpenMol.py -> build/lib/gridData copying gridData/OpenDX.py -> build/lib/gridData copying gridData/core.py -> build/lib/gridData copying gridData/__init__.py -> build/lib/gridData copying gridData/_version.py -> build/lib/gridData creating build/lib/gridData/tests copying gridData/tests/test_dx.py -> build/lib/gridData/tests copying gridData/tests/test_ccp4.py -> build/lib/gridData/tests copying gridData/tests/test_grid.py -> build/lib/gridData/tests copying gridData/tests/__init__.py -> build/lib/gridData/tests copying gridData/tests/test_gOpenMol.py -> build/lib/gridData/tests creating build/lib/gridData/tests/datafiles copying gridData/tests/datafiles/__init__.py -> build/lib/gridData/tests/datafiles copying gridData/tests/datafiles/test.dx -> build/lib/gridData/tests/datafiles copying gridData/tests/datafiles/test.ccp4 -> build/lib/gridData/tests/datafiles copying gridData/tests/datafiles/1jzv.ccp4 -> build/lib/gridData/tests/datafiles copying gridData/tests/datafiles/nAChR_M2_water.plt -> build/lib/gridData/tests/datafiles UPDATING build/lib/gridData/_version.py set build/lib/gridData/_version.py to '0.5.0' SUCCEEDED 00:00:04 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- x===> Staging for py36-GridDataFormats-0.5.0_1 ===> Generating temporary packing list running install running build running build_py UPDATING build/lib/gridData/_version.py set build/lib/gridData/_version.py to '0.5.0' running install_lib creating /construction/math/py-GridDataFormats/stage/usr/local/lib/python3.6 creating /construction/math/py-GridDataFormats/stage/usr/local/lib/python3.6/site-packages creating /construction/math/py-GridDataFormats/stage/usr/local/lib/python3.6/site-packages/gridData creating /construction/math/py-GridDataFormats/stage/usr/local/lib/python3.6/site-packages/gridData/tests copying build/lib/gridData/tests/test_ccp4.py -> /construction/math/py-GridDataFormats/stage/usr/local/lib/python3.6/site-packages/gridData/tests copying build/lib/gridData/tests/test_dx.py -> /construction/math/py-GridDataFormats/stage/usr/local/lib/python3.6/site-packages/gridData/tests copying build/lib/gridData/tests/__init__.py -> /construction/math/py-GridDataFormats/stage/usr/local/lib/python3.6/site-packages/gridData/tests copying build/lib/gridData/tests/test_gOpenMol.py -> /construction/math/py-GridDataFormats/stage/usr/local/lib/python3.6/site-packages/gridData/tests creating /construction/math/py-GridDataFormats/stage/usr/local/lib/python3.6/site-packages/gridData/tests/datafiles copying build/lib/gridData/tests/datafiles/test.dx -> /construction/math/py-GridDataFormats/stage/usr/local/lib/python3.6/site-packages/gridData/tests/datafiles copying build/lib/gridData/tests/datafiles/test.ccp4 -> /construction/math/py-GridDataFormats/stage/usr/local/lib/python3.6/site-packages/gridData/tests/datafiles copying build/lib/gridData/tests/datafiles/nAChR_M2_water.plt -> /construction/math/py-GridDataFormats/stage/usr/local/lib/python3.6/site-packages/gridData/tests/datafiles copying build/lib/gridData/tests/datafiles/1jzv.ccp4 -> /construction/math/py-GridDataFormats/stage/usr/local/lib/python3.6/site-packages/gridData/tests/datafiles copying build/lib/gridData/tests/datafiles/__init__.py -> /construction/math/py-GridDataFormats/stage/usr/local/lib/python3.6/site-packages/gridData/tests/datafiles copying build/lib/gridData/tests/test_grid.py -> /construction/math/py-GridDataFormats/stage/usr/local/lib/python3.6/site-packages/gridData/tests copying build/lib/gridData/core.py -> /construction/math/py-GridDataFormats/stage/usr/local/lib/python3.6/site-packages/gridData copying build/lib/gridData/OpenDX.py -> /construction/math/py-GridDataFormats/stage/usr/local/lib/python3.6/site-packages/gridData copying build/lib/gridData/__init__.py -> /construction/math/py-GridDataFormats/stage/usr/local/lib/python3.6/site-packages/gridData copying build/lib/gridData/CCP4.py -> /construction/math/py-GridDataFormats/stage/usr/local/lib/python3.6/site-packages/gridData copying build/lib/gridData/gOpenMol.py -> /construction/math/py-GridDataFormats/stage/usr/local/lib/python3.6/site-packages/gridData copying build/lib/gridData/_version.py -> /construction/math/py-GridDataFormats/stage/usr/local/lib/python3.6/site-packages/gridData byte-compiling /construction/math/py-GridDataFormats/stage/usr/local/lib/python3.6/site-packages/gridData/tests/test_ccp4.py to test_ccp4.cpython-36.pyc byte-compiling /construction/math/py-GridDataFormats/stage/usr/local/lib/python3.6/site-packages/gridData/tests/test_dx.py to test_dx.cpython-36.pyc byte-compiling /construction/math/py-GridDataFormats/stage/usr/local/lib/python3.6/site-packages/gridData/tests/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/math/py-GridDataFormats/stage/usr/local/lib/python3.6/site-packages/gridData/tests/test_gOpenMol.py to test_gOpenMol.cpython-36.pyc byte-compiling /construction/math/py-GridDataFormats/stage/usr/local/lib/python3.6/site-packages/gridData/tests/datafiles/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/math/py-GridDataFormats/stage/usr/local/lib/python3.6/site-packages/gridData/tests/test_grid.py to test_grid.cpython-36.pyc byte-compiling /construction/math/py-GridDataFormats/stage/usr/local/lib/python3.6/site-packages/gridData/core.py to core.cpython-36.pyc byte-compiling /construction/math/py-GridDataFormats/stage/usr/local/lib/python3.6/site-packages/gridData/OpenDX.py to OpenDX.cpython-36.pyc byte-compiling /construction/math/py-GridDataFormats/stage/usr/local/lib/python3.6/site-packages/gridData/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/math/py-GridDataFormats/stage/usr/local/lib/python3.6/site-packages/gridData/CCP4.py to CCP4.cpython-36.pyc byte-compiling /construction/math/py-GridDataFormats/stage/usr/local/lib/python3.6/site-packages/gridData/gOpenMol.py to gOpenMol.cpython-36.pyc byte-compiling /construction/math/py-GridDataFormats/stage/usr/local/lib/python3.6/site-packages/gridData/_version.py to _version.cpython-36.pyc writing byte-compilation script '/tmp/tmpej470xc7.py' /usr/local/bin/python3.6 /tmp/tmpej470xc7.py removing /tmp/tmpej470xc7.py running install_egg_info running egg_info creating GridDataFormats.egg-info writing GridDataFormats.egg-info/PKG-INFO writing dependency_links to GridDataFormats.egg-info/dependency_links.txt writing requirements to GridDataFormats.egg-info/requires.txt writing top-level names to GridDataFormats.egg-info/top_level.txt writing manifest file 'GridDataFormats.egg-info/SOURCES.txt' reading manifest file 'GridDataFormats.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'README' writing manifest file 'GridDataFormats.egg-info/SOURCES.txt' Copying GridDataFormats.egg-info to /construction/math/py-GridDataFormats/stage/usr/local/lib/python3.6/site-packages/GridDataFormats-0.5.0-py3.6.egg-info running install_scripts writing list of installed files to '/construction/math/py-GridDataFormats/.PLIST.pymodtmp' ===> Creating unique files: Move MAN files needing SUFFIX ===> Creating unique files: Move files needing SUFFIX ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:05 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- x====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- x===> Building package for py36-GridDataFormats-0.5.0_1 file sizes/checksums [46]: 0% file sizes/checksums [46]: 100% packing files [46]: 0% packing files [46]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:01 TOTAL TIME 00:00:34