------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/expat-2.2.8.txz Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/libffi-3.2.1_3.txz Installing /packages/All/ncurses-6.1.20190525.txz Installing /packages/All/readline-8.0.4.txz Installing /packages/All/gettext-runtime-0.20.1.txz Installing /packages/All/openssl-1.1.1d,1.txz Installing /packages/All/python27-2.7.17_1.txz ===== Message from python27-2.7.17_1: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter Installing /packages/All/py27-setuptools-44.0.0.txz ===== Message from py27-setuptools-44.0.0: -- Only /usr/local/bin/easy_install-2.7 script has been installed since Python 2.7 is not the default Python version. Installing /packages/All/metis-5.1.0_8.txz Installing /packages/All/tbb-2020.1.txz Installing /packages/All/gmp-6.2.0.txz Installing /packages/All/mpfr-4.0.2.txz Installing /packages/All/mpc-1.1.0_2.txz UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/binutils-2.33.1_2,1.txz Installing /packages/All/gcc8-8.4.0.txz ===== Message from gcc8-8.4.0: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/openblas-0.3.7_2,1.txz Installing /packages/All/suitesparse-5.4.0_5.txz Installing /packages/All/py27-numpy-1.16.5_4,1.txz Installing /packages/All/py27-six-1.14.0.txz UNFLAVORED devel/binutils -> use devel/binutils@native SUCCEEDED 00:00:53 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> py27-GridDataFormats-0.5.0_1 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> py27-GridDataFormats-0.5.0_1 depends on file: /usr/local/sbin/pkg - found => MDAnalysis-GridDataFormats-0.5.0_GH0.tar.gz doesn't seem to exist in /distfiles/. => Attempting to fetch https://codeload.github.com/MDAnalysis/GridDataFormats/tar.gz/0.5.0?dummy=/MDAnalysis-GridDataFormats-0.5.0_GH0.tar.gz fetch: https://codeload.github.com/MDAnalysis/GridDataFormats/tar.gz/0.5.0?dummy=/MDAnalysis-GridDataFormats-0.5.0_GH0.tar.gz: size unknown fetch: https://codeload.github.com/MDAnalysis/GridDataFormats/tar.gz/0.5.0?dummy=/MDAnalysis-GridDataFormats-0.5.0_GH0.tar.gz: size of remote file is not known MDAnalysis-GridDataFormats-0.5.0_GH0.tar.gz 0 B 0 Bps MDAnalysis-GridDataFormats-0.5.0_GH0.tar.gz 2161 kB 5051 kBps 00s => Fetched file size mismatch (expected 2213531, actual 2213526) => Trying next site => Attempting to fetch http://distcache.FreeBSD.org/ports-distfiles/MDAnalysis-GridDataFormats-0.5.0_GH0.tar.gz MDAnalysis-GridDataFormats-0.5.0_GH0.tar.gz 0% of 2161 kB 0 Bps MDAnalysis-GridDataFormats-0.5.0_GH0.tar.gz 24% of 2161 kB 759 kBps MDAnalysis-GridDataFormats-0.5.0_GH0.tar.gz 2161 kB 1687 kBps 01s ===> Fetching all distfiles required by py27-GridDataFormats-0.5.0_1 for building SUCCEEDED 00:00:03 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> py27-GridDataFormats-0.5.0_1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py27-GridDataFormats-0.5.0_1 for building => SHA256 Checksum OK for MDAnalysis-GridDataFormats-0.5.0_GH0.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> py27-GridDataFormats-0.5.0_1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py27-GridDataFormats-0.5.0_1 for building ===> Extracting for py27-GridDataFormats-0.5.0_1 => SHA256 Checksum OK for MDAnalysis-GridDataFormats-0.5.0_GH0.tar.gz. Extracted Memory Use: 6.36M SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for py27-GridDataFormats-0.5.0_1 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> py27-GridDataFormats-0.5.0_1 depends on package: py27-setuptools>0 - found ===> py27-GridDataFormats-0.5.0_1 depends on file: /usr/local/bin/python2.7 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> py27-GridDataFormats-0.5.0_1 depends on package: py27-setuptools>0 - found ===> py27-GridDataFormats-0.5.0_1 depends on file: /usr/local/bin/python2.7 - found ===> Configuring for py27-GridDataFormats-0.5.0_1 running config SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for py27-GridDataFormats-0.5.0_1 running build running build_py creating build creating build/lib creating build/lib/gridData copying gridData/CCP4.py -> build/lib/gridData copying gridData/OpenDX.py -> build/lib/gridData copying gridData/__init__.py -> build/lib/gridData copying gridData/_version.py -> build/lib/gridData copying gridData/core.py -> build/lib/gridData copying gridData/gOpenMol.py -> build/lib/gridData creating build/lib/gridData/tests copying gridData/tests/__init__.py -> build/lib/gridData/tests copying gridData/tests/test_ccp4.py -> build/lib/gridData/tests copying gridData/tests/test_dx.py -> build/lib/gridData/tests copying gridData/tests/test_gOpenMol.py -> build/lib/gridData/tests copying gridData/tests/test_grid.py -> build/lib/gridData/tests creating build/lib/gridData/tests/datafiles copying gridData/tests/datafiles/__init__.py -> build/lib/gridData/tests/datafiles copying gridData/tests/datafiles/test.dx -> build/lib/gridData/tests/datafiles copying gridData/tests/datafiles/1jzv.ccp4 -> build/lib/gridData/tests/datafiles copying gridData/tests/datafiles/test.ccp4 -> build/lib/gridData/tests/datafiles copying gridData/tests/datafiles/nAChR_M2_water.plt -> build/lib/gridData/tests/datafiles UPDATING build/lib/gridData/_version.py set build/lib/gridData/_version.py to '0.5.0' SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> py27-GridDataFormats-0.5.0_1 depends on package: py27-numpy>=1.15,1<1.19,1 - found ===> py27-GridDataFormats-0.5.0_1 depends on package: py27-six>0 - found ===> py27-GridDataFormats-0.5.0_1 depends on package: py27-setuptools>0 - found ===> py27-GridDataFormats-0.5.0_1 depends on file: /usr/local/bin/python2.7 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for py27-GridDataFormats-0.5.0_1 ===> py27-GridDataFormats-0.5.0_1 depends on package: py27-numpy>=1.15,1<1.19,1 - found ===> py27-GridDataFormats-0.5.0_1 depends on package: py27-six>0 - found ===> py27-GridDataFormats-0.5.0_1 depends on package: py27-setuptools>0 - found ===> py27-GridDataFormats-0.5.0_1 depends on file: /usr/local/bin/python2.7 - found ===> Generating temporary packing list running install running build running build_py UPDATING build/lib/gridData/_version.py set build/lib/gridData/_version.py to '0.5.0' running install_lib creating /construction/math/py-GridDataFormats/stage/usr/local/lib/python2.7 creating /construction/math/py-GridDataFormats/stage/usr/local/lib/python2.7/site-packages creating /construction/math/py-GridDataFormats/stage/usr/local/lib/python2.7/site-packages/gridData copying build/lib/gridData/CCP4.py -> /construction/math/py-GridDataFormats/stage/usr/local/lib/python2.7/site-packages/gridData copying build/lib/gridData/OpenDX.py -> /construction/math/py-GridDataFormats/stage/usr/local/lib/python2.7/site-packages/gridData copying build/lib/gridData/__init__.py -> /construction/math/py-GridDataFormats/stage/usr/local/lib/python2.7/site-packages/gridData copying build/lib/gridData/_version.py -> /construction/math/py-GridDataFormats/stage/usr/local/lib/python2.7/site-packages/gridData copying build/lib/gridData/core.py -> /construction/math/py-GridDataFormats/stage/usr/local/lib/python2.7/site-packages/gridData copying build/lib/gridData/gOpenMol.py -> /construction/math/py-GridDataFormats/stage/usr/local/lib/python2.7/site-packages/gridData creating /construction/math/py-GridDataFormats/stage/usr/local/lib/python2.7/site-packages/gridData/tests copying build/lib/gridData/tests/__init__.py -> /construction/math/py-GridDataFormats/stage/usr/local/lib/python2.7/site-packages/gridData/tests copying build/lib/gridData/tests/test_ccp4.py -> /construction/math/py-GridDataFormats/stage/usr/local/lib/python2.7/site-packages/gridData/tests copying build/lib/gridData/tests/test_dx.py -> /construction/math/py-GridDataFormats/stage/usr/local/lib/python2.7/site-packages/gridData/tests copying build/lib/gridData/tests/test_gOpenMol.py -> /construction/math/py-GridDataFormats/stage/usr/local/lib/python2.7/site-packages/gridData/tests copying build/lib/gridData/tests/test_grid.py -> /construction/math/py-GridDataFormats/stage/usr/local/lib/python2.7/site-packages/gridData/tests creating /construction/math/py-GridDataFormats/stage/usr/local/lib/python2.7/site-packages/gridData/tests/datafiles copying build/lib/gridData/tests/datafiles/__init__.py -> /construction/math/py-GridDataFormats/stage/usr/local/lib/python2.7/site-packages/gridData/tests/datafiles copying build/lib/gridData/tests/datafiles/test.dx -> /construction/math/py-GridDataFormats/stage/usr/local/lib/python2.7/site-packages/gridData/tests/datafiles copying build/lib/gridData/tests/datafiles/1jzv.ccp4 -> /construction/math/py-GridDataFormats/stage/usr/local/lib/python2.7/site-packages/gridData/tests/datafiles copying build/lib/gridData/tests/datafiles/test.ccp4 -> /construction/math/py-GridDataFormats/stage/usr/local/lib/python2.7/site-packages/gridData/tests/datafiles copying build/lib/gridData/tests/datafiles/nAChR_M2_water.plt -> /construction/math/py-GridDataFormats/stage/usr/local/lib/python2.7/site-packages/gridData/tests/datafiles byte-compiling /construction/math/py-GridDataFormats/stage/usr/local/lib/python2.7/site-packages/gridData/CCP4.py to CCP4.pyc byte-compiling /construction/math/py-GridDataFormats/stage/usr/local/lib/python2.7/site-packages/gridData/OpenDX.py to OpenDX.pyc byte-compiling /construction/math/py-GridDataFormats/stage/usr/local/lib/python2.7/site-packages/gridData/__init__.py to __init__.pyc byte-compiling /construction/math/py-GridDataFormats/stage/usr/local/lib/python2.7/site-packages/gridData/_version.py to _version.pyc byte-compiling /construction/math/py-GridDataFormats/stage/usr/local/lib/python2.7/site-packages/gridData/core.py to core.pyc byte-compiling /construction/math/py-GridDataFormats/stage/usr/local/lib/python2.7/site-packages/gridData/gOpenMol.py to gOpenMol.pyc byte-compiling /construction/math/py-GridDataFormats/stage/usr/local/lib/python2.7/site-packages/gridData/tests/__init__.py to __init__.pyc byte-compiling /construction/math/py-GridDataFormats/stage/usr/local/lib/python2.7/site-packages/gridData/tests/test_ccp4.py to test_ccp4.pyc byte-compiling /construction/math/py-GridDataFormats/stage/usr/local/lib/python2.7/site-packages/gridData/tests/test_dx.py to test_dx.pyc byte-compiling /construction/math/py-GridDataFormats/stage/usr/local/lib/python2.7/site-packages/gridData/tests/test_gOpenMol.py to test_gOpenMol.pyc byte-compiling /construction/math/py-GridDataFormats/stage/usr/local/lib/python2.7/site-packages/gridData/tests/test_grid.py to test_grid.pyc byte-compiling /construction/math/py-GridDataFormats/stage/usr/local/lib/python2.7/site-packages/gridData/tests/datafiles/__init__.py to __init__.pyc writing byte-compilation script '/tmp/tmpzJH0pZ.py' /usr/local/bin/python2.7 -O /tmp/tmpzJH0pZ.py removing /tmp/tmpzJH0pZ.py running install_egg_info running egg_info creating GridDataFormats.egg-info writing requirements to GridDataFormats.egg-info/requires.txt writing GridDataFormats.egg-info/PKG-INFO writing top-level names to GridDataFormats.egg-info/top_level.txt writing dependency_links to GridDataFormats.egg-info/dependency_links.txt writing manifest file 'GridDataFormats.egg-info/SOURCES.txt' reading manifest file 'GridDataFormats.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'README' writing manifest file 'GridDataFormats.egg-info/SOURCES.txt' Copying GridDataFormats.egg-info to /construction/math/py-GridDataFormats/stage/usr/local/lib/python2.7/site-packages/GridDataFormats-0.5.0-py2.7.egg-info running install_scripts writing list of installed files to '/construction/math/py-GridDataFormats/.PLIST.pymodtmp' ===> Creating unique files: Move MAN files needing SUFFIX ===> Creating unique files: Move files needing SUFFIX ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:02 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for py27-GridDataFormats-0.5.0_1 file sizes/checksums [46]: 0% file sizes/checksums [46]: 100% packing files [46]: 0% packing files [46]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:04 TOTAL TIME 00:01:06