------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/gettext-runtime-0.20.1.txz pkg: Cannot runscript POST-INSTALL:Bad file descriptor Installing /packages/All/gmake-4.2.1_3.txz pkg: Cannot runscript POST-INSTALL:Bad file descriptor Installing /packages/All/pciids-20200222.txz Installing /packages/All/libpciaccess-0.16.txz pkg: Cannot runscript POST-INSTALL:Bad file descriptor Installing /packages/All/libxml2-2.9.10.txz pkg: Cannot runscript POST-INSTALL:Bad file descriptor Installing /packages/All/hwloc-1.11.11.txz pkg: Cannot runscript POST-INSTALL:Bad file descriptor Installing /packages/All/libltdl-2.4.6.txz pkg: Cannot runscript POST-INSTALL:Bad file descriptor Installing /packages/All/openssl-1.1.1d,1.txz pkg: Cannot runscript POST-INSTALL:Bad file descriptor Installing /packages/All/libevent-2.1.11.txz pkg: Cannot runscript POST-INSTALL:Bad file descriptor Installing /packages/All/gmp-6.2.0.txz pkg: Cannot runscript POST-INSTALL:Bad file descriptor Installing /packages/All/mpfr-4.0.2.txz pkg: Cannot runscript POST-INSTALL:Bad file descriptor Installing /packages/All/mpc-1.1.0_2.txz pkg: Cannot runscript POST-INSTALL:Bad file descriptor UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/binutils-2.33.1_2,1.txz pkg: Cannot runscript POST-INSTALL:Bad file descriptor Installing /packages/All/gcc8-8.4.0.txz pkg: Cannot runscript POST-INSTALL:Bad file descriptor ===== Message from gcc8-8.4.0: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/openmpi-1.10.7_7.txz pkg: Cannot runscript POST-INSTALL:Bad file descriptor UNFLAVORED devel/binutils -> use devel/binutils@native SUCCEEDED 00:00:17 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> parmgridgen-1.0_14 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> parmgridgen-1.0_14 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by parmgridgen-1.0_14 for building SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> parmgridgen-1.0_14 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by parmgridgen-1.0_14 for building => SHA256 Checksum OK for ParMGridGen-1.0.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> parmgridgen-1.0_14 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by parmgridgen-1.0_14 for building ===> Extracting for parmgridgen-1.0_14 => SHA256 Checksum OK for ParMGridGen-1.0.tar.gz. Extracted Memory Use: 7.55M SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for parmgridgen-1.0_14 ===> Applying ports patches for parmgridgen-1.0_14 SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> parmgridgen-1.0_14 depends on executable: gmake - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- ===> parmgridgen-1.0_14 depends on shared library: libmpi.so - found (/usr/local/mpi/openmpi/lib/libmpi.so) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> parmgridgen-1.0_14 depends on executable: gmake - found ===> parmgridgen-1.0_14 depends on shared library: libmpi.so - found (/usr/local/mpi/openmpi/lib/libmpi.so) ===> Configuring for parmgridgen-1.0_14 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for parmgridgen-1.0_14 gmake[1]: Entering directory '/construction/math/parmgridgen/ParMGridGen-1.0' (cd MGridGen ; gmake) gmake[2]: Entering directory '/construction/math/parmgridgen/ParMGridGen-1.0/MGridGen' (cd IMlib ; gmake ) gmake[3]: Entering directory '/construction/math/parmgridgen/ParMGridGen-1.0/MGridGen/IMlib' cc -pipe -O2 -fno-strict-aliasing -I./ -I/usr/local/include -I/usr/local/mpi/openmpi/include -c blas.c cc -pipe -O2 -fno-strict-aliasing -I./ -I/usr/local/include -I/usr/local/mpi/openmpi/include -c dfkeysort.c cc -pipe -O2 -fno-strict-aliasing -I./ -I/usr/local/include -I/usr/local/mpi/openmpi/include -c dkeysort.c cc -pipe -O2 -fno-strict-aliasing -I./ -I/usr/local/include -I/usr/local/mpi/openmpi/include -c file.c cc -pipe -O2 -fno-strict-aliasing -I./ -I/usr/local/include -I/usr/local/mpi/openmpi/include -c ifkeysort.c cc -pipe -O2 -fno-strict-aliasing -I./ -I/usr/local/include -I/usr/local/mpi/openmpi/include -c ifloatsort.c cc -pipe -O2 -fno-strict-aliasing -I./ -I/usr/local/include -I/usr/local/mpi/openmpi/include -c iintsort.c cc -pipe -O2 -fno-strict-aliasing -I./ -I/usr/local/include -I/usr/local/mpi/openmpi/include -c ikeysort.c cc -pipe -O2 -fno-strict-aliasing -I./ -I/usr/local/include -I/usr/local/mpi/openmpi/include -c memory.c cc -pipe -O2 -fno-strict-aliasing -I./ -I/usr/local/include -I/usr/local/mpi/openmpi/include -c sort.c sort.c: In function 'BucketSortKeysInc': sort.c:66:3: warning: implicit declaration of function 'IMfree'; did you mean 'free'? [-Wimplicit-function-declaration] IMfree(&counts, LTERM); ^~~~~~ free cc -pipe -O2 -fno-strict-aliasing -I./ -I/usr/local/include -I/usr/local/mpi/openmpi/include -c util.c ar rv libIMlib.a blas.o dfkeysort.o dkeysort.o file.o ifkeysort.o ifloatsort.o iintsort.o ikeysort.o memory.o sort.o util.o /usr/libexec/binutils227/elf/ar: creating libIMlib.a a - blas.o a - dfkeysort.o a - dkeysort.o a - file.o a - ifkeysort.o a - ifloatsort.o a - iintsort.o a - ikeysort.o a - memory.o a - sort.o a - util.o ar -ts libIMlib.a gmake[3]: Leaving directory '/construction/math/parmgridgen/ParMGridGen-1.0/MGridGen/IMlib' (cd Lib ; gmake ) gmake[3]: Entering directory '/construction/math/parmgridgen/ParMGridGen-1.0/MGridGen/Lib' cc -pipe -O2 -fno-strict-aliasing -I./ -I../../MGridGen/IMlib -I/usr/local/include -I/usr/local/mpi/openmpi/include -c coarsen.c coarsen.c: In function 'Coarsen_Restricted': coarsen.c:83:5: warning: implicit declaration of function 'IMfree'; did you mean 'free'? [-Wimplicit-function-declaration] IMfree(&(cgraph->finer->where), LTERM); ^~~~~~ free cc -pipe -O2 -fno-strict-aliasing -I./ -I../../MGridGen/IMlib -I/usr/local/include -I/usr/local/mpi/openmpi/include -c kwayfm.c kwayfm.c: In function 'Random_KWayARatioRefine': kwayfm.c:149:3: warning: implicit declaration of function 'IMfree'; did you mean 'free'? [-Wimplicit-function-declaration] IMfree(&perm, &phtable, °rees, &ptarget, LTERM); ^~~~~~ free cc -pipe -O2 -fno-strict-aliasing -I./ -I../../MGridGen/IMlib -I/usr/local/include -I/usr/local/mpi/openmpi/include -c match.c match.c: In function 'Match_RM': match.c:58:3: warning: implicit declaration of function 'IMfree'; did you mean 'free'? [-Wimplicit-function-declaration] IMfree(&match, &perm, LTERM); ^~~~~~ free cc -pipe -O2 -fno-strict-aliasing -I./ -I../../MGridGen/IMlib -I/usr/local/include -I/usr/local/mpi/openmpi/include -c merge.c merge.c: In function 'Cycle': merge.c:32:4: warning: implicit declaration of function 'IMfree'; did you mean 'free'? [-Wimplicit-function-declaration] IMfree(&graph->pwgts, &graph->pvol, &graph->psurf, LTERM); ^~~~~~ free cc -pipe -O2 -fno-strict-aliasing -I./ -I../../MGridGen/IMlib -I/usr/local/include -I/usr/local/mpi/openmpi/include -c mgridgen.c cc -pipe -O2 -fno-strict-aliasing -I./ -I../../MGridGen/IMlib -I/usr/local/include -I/usr/local/mpi/openmpi/include -c refine.c refine.c: In function 'RefineKWay': refine.c:77:3: warning: implicit declaration of function 'IMfree'; did you mean 'free'? [-Wimplicit-function-declaration] IMfree(&graph->pwgts, &graph->pvol, &graph->psurf, LTERM); ^~~~~~ free cc -pipe -O2 -fno-strict-aliasing -I./ -I../../MGridGen/IMlib -I/usr/local/include -I/usr/local/mpi/openmpi/include -c setup.c setup.c: In function 'FreeGraph': setup.c:52:3: warning: implicit declaration of function 'IMfree'; did you mean 'free'? [-Wimplicit-function-declaration] IMfree(&graph->xadj, &graph->vwgt, &graph->vvol, &graph->vsurf, ^~~~~~ free ar rv ../../libmgrid.a coarsen.o kwayfm.o match.o merge.o mgridgen.o refine.o setup.o ../IMlib/blas.o ../IMlib/dfkeysort.o ../IMlib/dkeysort.o ../IMlib/file.o ../IMlib/ifkeysort.o ../IMlib/ifloatsort.o ../IMlib/iintsort.o ../IMlib/ikeysort.o ../IMlib/memory.o ../IMlib/sort.o ../IMlib/util.o /usr/libexec/binutils227/elf/ar: creating ../../libmgrid.a a - coarsen.o a - kwayfm.o a - match.o a - merge.o a - mgridgen.o a - refine.o a - setup.o a - ../IMlib/blas.o a - ../IMlib/dfkeysort.o a - ../IMlib/dkeysort.o a - ../IMlib/file.o a - ../IMlib/ifkeysort.o a - ../IMlib/ifloatsort.o a - ../IMlib/iintsort.o a - ../IMlib/ikeysort.o a - ../IMlib/memory.o a - ../IMlib/sort.o a - ../IMlib/util.o ar -ts ../../libmgrid.a gmake[3]: Leaving directory '/construction/math/parmgridgen/ParMGridGen-1.0/MGridGen/Lib' (cd Programs ; gmake ) gmake[3]: Entering directory '/construction/math/parmgridgen/ParMGridGen-1.0/MGridGen/Programs' cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include -I/usr/local/mpi/openmpi/include -I../../MGridGen/IMlib -I../Lib -c mgridgen.c mgridgen.c: In function 'main': mgridgen.c:75:3: warning: implicit declaration of function 'IMfree'; did you mean 'free'? [-Wimplicit-function-declaration] IMfree(&graph.xadj, &graph.vvol, &graph.vsurf, &graph.adjncy, &graph.adjwgt, &part, LTERM); ^~~~~~ free cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include -I/usr/local/mpi/openmpi/include -I../../MGridGen/IMlib -I../Lib -c io.c cc -L../.. -L/usr/lib/ -L//usr/local/lib/ -L//usr/local/mpi/openmpi/lib -o ../../mgridgen mgridgen.o io.o -lmgrid -lm -pthread chmod 744 ../../mgridgen gmake[3]: Leaving directory '/construction/math/parmgridgen/ParMGridGen-1.0/MGridGen/Programs' gmake[2]: Leaving directory '/construction/math/parmgridgen/ParMGridGen-1.0/MGridGen' (cd ParMGridGen ; gmake) gmake[2]: Entering directory '/construction/math/parmgridgen/ParMGridGen-1.0/ParMGridGen' (cd IMParMetis-2.0 ; gmake ) gmake[3]: Entering directory '/construction/math/parmgridgen/ParMGridGen-1.0/ParMGridGen/IMParMetis-2.0' (cd ParMETISLib ; gmake ) gmake[4]: Entering directory '/construction/math/parmgridgen/ParMGridGen-1.0/ParMGridGen/IMParMetis-2.0/ParMETISLib' cc -I/usr/local/include -I/usr/local/mpi/openmpi/include -I./ -c fused.c fused.c: In function 'ParMETIS_FusedElementGraph': fused.c:55:5: warning: implicit declaration of function 'IMfree'; did you mean 'free'? [-Wimplicit-function-declaration] IMfree(&graph->vwgt, LTERM); ^~~~~~ free cc -I/usr/local/include -I/usr/local/mpi/openmpi/include -I./ -c comm.c cc -I/usr/local/include -I/usr/local/mpi/openmpi/include -I./ -c util.c util.c: In function '___imalloc': util.c:85:17: warning: implicit declaration of function 'IMmalloc'; did you mean 'malloc'? [-Wimplicit-function-declaration] return (int *)IMmalloc(sizeof(int)*n, msg); ^~~~~~~~ malloc util.c:85:10: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] return (int *)IMmalloc(sizeof(int)*n, msg); ^ util.c: In function '___idxmalloc': util.c:97:10: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] return (idxtype *)IMmalloc(sizeof(idxtype)*n, msg); ^ util.c: In function '___fmalloc': util.c:108:10: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] return (float *)IMmalloc(sizeof(float)*n, msg); ^ util.c: In function '___realmalloc': util.c:120:10: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] return (realtype *)IMmalloc(sizeof(realtype)*n, msg); ^ util.c: In function '___ismalloc': util.c:132:24: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] return iset(n, ival, (int *)IMmalloc(sizeof(int)*n, msg)); ^ util.c: In function '___idxsmalloc': util.c:145:26: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] return idxset(n, ival, (idxtype *)IMmalloc(sizeof(idxtype)*n, msg)); ^ util.c: In function '___realsmalloc': util.c:156:27: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] return realset(n, rval, (realtype *)IMmalloc(sizeof(realtype)*n, msg)); ^ cc -I/usr/local/include -I/usr/local/mpi/openmpi/include -I./ -c memory.c memory.c: In function '___PreAllocateMemory': memory.c:24:30: warning: implicit declaration of function 'IMmalloc'; did you mean 'malloc'? [-Wimplicit-function-declaration] wspace->core = (idxtype *) IMmalloc(wspace->maxcore, "PreAllocateMemory: wspace->core"); ^~~~~~~~ malloc memory.c:24:18: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] wspace->core = (idxtype *) IMmalloc(wspace->maxcore, "PreAllocateMemory: wspace->core"); ^ memory.c:35:22: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] wspace->pepairs1 = (KeyValueType *)IMmalloc(sizeof(KeyValueType)*(ctrl->nparts+ctrl->npes+1), "PreAllocateMemory: wspace->pepairs?"); ^ memory.c:36:22: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] wspace->pepairs2 = (KeyValueType *)IMmalloc(sizeof(KeyValueType)*(ctrl->nparts+ctrl->npes+1), "PreAllocateMemory: wspace->pepairs?"); ^ memory.c: In function '___FreeWSpace': memory.c:46:3: warning: implicit declaration of function 'IMfree'; did you mean 'free'? [-Wimplicit-function-declaration] IMfree(&wspace->core, ^~~~~~ free memory.c: In function '___CreateGraph': memory.c:74:11: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] graph = (GraphType *)IMmalloc(sizeof(GraphType), "CreateCoarseGraph: graph"); ^ cc -I/usr/local/include -I/usr/local/mpi/openmpi/include -I./ -c debug.c cc -I/usr/local/include -I/usr/local/mpi/openmpi/include -I./ -c setup.c setup.c: In function '___SetUp': setup.c:198:37: warning: implicit declaration of function 'IMmalloc'; did you mean 'malloc'? [-Wimplicit-function-declaration] wspace->pairs = (KeyValueType *)IMmalloc(sizeof(KeyValueType)*wspace->nlarge, "SetUp: wspace->pairs"); ^~~~~~~~ malloc setup.c:198:21: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] wspace->pairs = (KeyValueType *)IMmalloc(sizeof(KeyValueType)*wspace->nlarge, "SetUp: wspace->pairs"); ^ cc -I/usr/local/include -I/usr/local/mpi/openmpi/include -I./ -c diffuse.c diffuse.c: In function '___ParMETIS_RepartLDiffusion': diffuse.c:57:3: warning: implicit declaration of function 'IMfree'; did you mean 'free'? [-Wimplicit-function-declaration] IMfree(&graph->vsize, LTERM); ^~~~~~ free cc -I/usr/local/include -I/usr/local/mpi/openmpi/include -I./ -c grsetup.c grsetup.c: In function '___ComputeMoveStatistics': grsetup.c:143:3: warning: implicit declaration of function 'IMfree'; did you mean 'free'? [-Wimplicit-function-declaration] IMfree(&lpvtxs, &gpvtxs, LTERM); ^~~~~~ free cc -I/usr/local/include -I/usr/local/mpi/openmpi/include -I./ -c timer.c cc -I/usr/local/include -I/usr/local/mpi/openmpi/include -I./ -c coarsen.c coarsen.c: In function '___Local_CreateCoarseGraph': coarsen.c:308:3: warning: implicit declaration of function 'IMfree'; did you mean 'free'? [-Wimplicit-function-declaration] IMfree(&cadjncy, &cadjwgt, &graph->where, LTERM); /* Note that graph->where works fine even if it is NULL */ ^~~~~~ free cc -I/usr/local/include -I/usr/local/mpi/openmpi/include -I./ -c edge_refine.c edge_refine.c: In function '___ComputePartitionParams': edge_refine.c:152:39: warning: implicit declaration of function 'IMmalloc'; did you mean 'malloc'? [-Wimplicit-function-declaration] rinfo = graph->rinfo = (RInfoType *)IMmalloc(sizeof(RInfoType)*nvtxs, "ComputePartitionParams: rinfo"); ^~~~~~~~ malloc edge_refine.c:152:26: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] rinfo = graph->rinfo = (RInfoType *)IMmalloc(sizeof(RInfoType)*nvtxs, "ComputePartitionParams: rinfo"); ^ edge_refine.c: In function '___KWayRefineClean': edge_refine.c:489:3: warning: implicit declaration of function 'IMfree'; did you mean 'free'? [-Wimplicit-function-declaration] IMfree(&update, &nupds_pe, &htable, &changed, &pperm, &perm, LTERM); ^~~~~~ free cc -I/usr/local/include -I/usr/local/mpi/openmpi/include -I./ -c drivers.c cc -I/usr/local/include -I/usr/local/mpi/openmpi/include -I./ -c remap.c remap.c: In function '___ComputeTotalVReMap1': remap.c:69:29: warning: implicit declaration of function 'IMmalloc'; did you mean 'malloc'? [-Wimplicit-function-declaration] order = (KeyValueType *)IMmalloc(sizeof(KeyValueType)*npes*npes, "ComputeTotalVReMap: order"); ^~~~~~~~ malloc remap.c:69:13: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] order = (KeyValueType *)IMmalloc(sizeof(KeyValueType)*npes*npes, "ComputeTotalVReMap: order"); ^ remap.c:73:13: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] order = (KeyValueType *)IMmalloc(sizeof(KeyValueType)*npes, "ComputeTotalVReMap: order"); ^ remap.c:142:3: warning: implicit declaration of function 'IMfree'; did you mean 'free'? [-Wimplicit-function-declaration] IMfree(&order, LTERM); ^~~~~~ free cc -I/usr/local/include -I/usr/local/mpi/openmpi/include -I./ -c iidxsort.c cc -I/usr/local/include -I/usr/local/mpi/openmpi/include -I./ -c ikeysort.c cc -I/usr/local/include -I/usr/local/mpi/openmpi/include -I./ -c var.c ar rv ../libIMparmetis.a fused.o comm.o util.o memory.o debug.o setup.o diffuse.o grsetup.o timer.o coarsen.o edge_refine.o drivers.o remap.o iidxsort.o ikeysort.o var.o /usr/libexec/binutils227/elf/ar: creating ../libIMparmetis.a a - fused.o a - comm.o a - util.o a - memory.o a - debug.o a - setup.o a - diffuse.o a - grsetup.o a - timer.o a - coarsen.o a - edge_refine.o a - drivers.o a - remap.o a - iidxsort.o a - ikeysort.o a - var.o ar -ts ../libIMparmetis.a gmake[4]: Leaving directory '/construction/math/parmgridgen/ParMGridGen-1.0/ParMGridGen/IMParMetis-2.0/ParMETISLib' gmake[3]: Leaving directory '/construction/math/parmgridgen/ParMGridGen-1.0/ParMGridGen/IMParMetis-2.0' (cd ParLib ; gmake ) gmake[3]: Entering directory '/construction/math/parmgridgen/ParMGridGen-1.0/ParMGridGen/ParLib' cc -pipe -O2 -fno-strict-aliasing -I./ -I../../MGridGen/IMlib -I/usr/local/include -I/usr/local/mpi/openmpi/include -c comm.c cc -pipe -O2 -fno-strict-aliasing -I./ -I../../MGridGen/IMlib -I/usr/local/include -I/usr/local/mpi/openmpi/include -c util.c cc -pipe -O2 -fno-strict-aliasing -I./ -I../../MGridGen/IMlib -I/usr/local/include -I/usr/local/mpi/openmpi/include -c memory.c memory.c: In function 'FreeMGridWSpace___': memory.c:50:3: warning: implicit declaration of function 'IMfree'; did you mean 'free'? [-Wimplicit-function-declaration] IMfree(&wspace->core, ^~~~~~ free cc -pipe -O2 -fno-strict-aliasing -I./ -I../../MGridGen/IMlib -I/usr/local/include -I/usr/local/mpi/openmpi/include -c debug.c cc -pipe -O2 -fno-strict-aliasing -I./ -I../../MGridGen/IMlib -I/usr/local/include -I/usr/local/mpi/openmpi/include -c setup.c cc -pipe -O2 -fno-strict-aliasing -I./ -I../../MGridGen/IMlib -I/usr/local/include -I/usr/local/mpi/openmpi/include -c parmgridgen.c parmgridgen.c: In function 'ParMGridGen': parmgridgen.c:110:3: warning: implicit declaration of function 'MGridGen'; did you mean 'ParMGridGen'? [-Wimplicit-function-declaration] MGridGen(nvtxs, orxadj, myvvol, orvsurf, oradjncy, oradjwgt, minsize, maxsize, ^~~~~~~~ ParMGridGen parmgridgen.c:117:3: warning: implicit declaration of function 'IMfree'; did you mean 'free'? [-Wimplicit-function-declaration] IMfree(&orxadj, &oradjncy, &oradjwgt, &orvsurf, LTERM); ^~~~~~ free parmgridgen.c: In function 'MoveRefine': parmgridgen.c:272:6: warning: implicit declaration of function 'ParMETIS_FusedElementGraph' [-Wimplicit-function-declaration] ParMETIS_FusedElementGraph(vtxdist, xadj, vvol, vsurf, adjncy, vwgt, adjwgt, ^~~~~~~~~~~~~~~~~~~~~~~~~~ parmgridgen.c:378:6: warning: implicit declaration of function 'MGridGenRefine'; did you mean 'MoveRefine'? [-Wimplicit-function-declaration] MGridGenRefine(nvtxs, mgraph->xadj, mgraph->vvol, mgraph->vsurf, mgraph->adjncy, ^~~~~~~~~~~~~~ MoveRefine cc -pipe -O2 -fno-strict-aliasing -I./ -I../../MGridGen/IMlib -I/usr/local/include -I/usr/local/mpi/openmpi/include -c grsetup.c cc -pipe -O2 -fno-strict-aliasing -I./ -I../../MGridGen/IMlib -I/usr/local/include -I/usr/local/mpi/openmpi/include -c move.c move.c: In function 'MoveMGridGraph___': move.c:241:3: warning: implicit declaration of function 'IMfree'; did you mean 'free'? [-Wimplicit-function-declaration] IMfree(&newlabel, &realcore, LTERM); ^~~~~~ free cc -pipe -O2 -fno-strict-aliasing -I./ -I../../MGridGen/IMlib -I/usr/local/include -I/usr/local/mpi/openmpi/include -c ikeysort.c ar rv ../../libparmgrid.a comm.o util.o memory.o debug.o setup.o parmgridgen.o grsetup.o move.o ikeysort.o ../IMParMetis-2.0/ParMETISLib/fused.o ../IMParMetis-2.0/ParMETISLib/comm.o ../IMParMetis-2.0/ParMETISLib/util.o ../IMParMetis-2.0/ParMETISLib/memory.o ../IMParMetis-2.0/ParMETISLib/debug.o ../IMParMetis-2.0/ParMETISLib/setup.o ../IMParMetis-2.0/ParMETISLib/diffuse.o ../IMParMetis-2.0/ParMETISLib/grsetup.o ../IMParMetis-2.0/ParMETISLib/timer.o ../IMParMetis-2.0/ParMETISLib/coarsen.o ../IMParMetis-2.0/ParMETISLib/edge_refine.o ../IMParMetis-2.0/ParMETISLib/drivers.o ../IMParMetis-2.0/ParMETISLib/remap.o ../IMParMetis-2.0/ParMETISLib/iidxsort.o ../IMParMetis-2.0/ParMETISLib/ikeysort.o ../IMParMetis-2.0/ParMETISLib/var.o /usr/libexec/binutils227/elf/ar: creating ../../libparmgrid.a a - comm.o a - util.o a - memory.o a - debug.o a - setup.o a - parmgridgen.o a - grsetup.o a - move.o a - ikeysort.o a - ../IMParMetis-2.0/ParMETISLib/fused.o a - ../IMParMetis-2.0/ParMETISLib/comm.o a - ../IMParMetis-2.0/ParMETISLib/util.o a - ../IMParMetis-2.0/ParMETISLib/memory.o a - ../IMParMetis-2.0/ParMETISLib/debug.o a - ../IMParMetis-2.0/ParMETISLib/setup.o a - ../IMParMetis-2.0/ParMETISLib/diffuse.o a - ../IMParMetis-2.0/ParMETISLib/grsetup.o a - ../IMParMetis-2.0/ParMETISLib/timer.o a - ../IMParMetis-2.0/ParMETISLib/coarsen.o a - ../IMParMetis-2.0/ParMETISLib/edge_refine.o a - ../IMParMetis-2.0/ParMETISLib/drivers.o a - ../IMParMetis-2.0/ParMETISLib/remap.o a - ../IMParMetis-2.0/ParMETISLib/iidxsort.o a - ../IMParMetis-2.0/ParMETISLib/ikeysort.o a - ../IMParMetis-2.0/ParMETISLib/var.o ar -ts ../../libparmgrid.a gmake[3]: Leaving directory '/construction/math/parmgridgen/ParMGridGen-1.0/ParMGridGen/ParLib' (cd Programs ; gmake ) gmake[3]: Entering directory '/construction/math/parmgridgen/ParMGridGen-1.0/ParMGridGen/Programs' cc -pipe -O2 -fno-strict-aliasing -I../ParLib -I../../MGridGen/IMlib -I/usr/local/include -I/usr/local/mpi/openmpi/include -c main.c cc -pipe -O2 -fno-strict-aliasing -I../ParLib -I../../MGridGen/IMlib -I/usr/local/include -I/usr/local/mpi/openmpi/include -c parmgridgen.c parmgridgen.c: In function 'TestParMGridGen': parmgridgen.c:57:3: warning: implicit declaration of function 'IMfree'; did you mean 'free'? [-Wimplicit-function-declaration] IMfree(&graph.vtxdist, &graph.xadj, &graph.vvol, &graph.vsurf, &graph.vwgt, ^~~~~~ free cc -pipe -O2 -fno-strict-aliasing -I../ParLib -I../../MGridGen/IMlib -I/usr/local/include -I/usr/local/mpi/openmpi/include -c io.c io.c: In function 'MGridReadTestGraph': io.c:139:5: warning: implicit declaration of function 'IMfree'; did you mean 'free'? [-Wimplicit-function-declaration] IMfree(&gxadj, &gvvol, &gvsurf, &gadjncy, &gadjwgt, LTERM); ^~~~~~ free cc -o ../../parmgridgen main.o parmgridgen.o io.o -L../.. -L/usr/lib/ -L//usr/local/lib/ -L//usr/local/mpi/openmpi/lib -lparmgrid -lmgrid -lmpi -lm -pthread chmod 744 ../../parmgridgen gmake[3]: Leaving directory '/construction/math/parmgridgen/ParMGridGen-1.0/ParMGridGen/Programs' gmake[2]: Leaving directory '/construction/math/parmgridgen/ParMGridGen-1.0/ParMGridGen' gmake[1]: Leaving directory '/construction/math/parmgridgen/ParMGridGen-1.0' SUCCEEDED 00:00:21 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for parmgridgen-1.0_14 ===> Generating temporary packing list install -s -m 555 /construction/math/parmgridgen/ParMGridGen-1.0/mgridgen /construction/math/parmgridgen/stage/usr/local/bin/mgridgen install -s -m 555 /construction/math/parmgridgen/ParMGridGen-1.0/parmgridgen /construction/math/parmgridgen/stage/usr/local/bin/parmgridgen install -m 0644 /construction/math/parmgridgen/ParMGridGen-1.0/libmgrid.a /construction/math/parmgridgen/stage/usr/local/lib/libmgrid.a install -m 0644 /construction/math/parmgridgen/ParMGridGen-1.0/libparmgrid.a /construction/math/parmgridgen/stage/usr/local/lib/libparmgrid.a install -m 0644 /construction/math/parmgridgen/ParMGridGen-1.0/mgridgen.h /construction/math/parmgridgen/stage/usr/local/include/mgridgen.h install -m 0644 /construction/math/parmgridgen/ParMGridGen-1.0/README /construction/math/parmgridgen/stage/usr/local/share/doc/parmgridgen/README ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks Warning: Possible REINPLACE_CMD issues sed failed: file content unchanged from backup: ParMGridGen/IMParMetis-2.0/Makefile SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for parmgridgen-1.0_14 (parmgridgen-1.0_14) /construction/math/parmgridgen/stage//usr/local/bin/parmgridgen - required shared library libmpi.so.12 not found file sizes/checksums [6]: 0% file sizes/checksums [6]: 100% packing files [6]: 0% packing files [6]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:01 TOTAL TIME 00:00:42