------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/gettext-runtime-0.20.1.txz pkg: Cannot runscript POST-INSTALL:Bad file descriptor Installing /packages/All/gmake-4.2.1_3.txz pkg: Cannot runscript POST-INSTALL:Bad file descriptor Installing /packages/All/gmp-6.2.0.txz pkg: Cannot runscript POST-INSTALL:Bad file descriptor Installing /packages/All/mpfr-4.0.2.txz pkg: Cannot runscript POST-INSTALL:Bad file descriptor Installing /packages/All/mpc-1.1.0_2.txz pkg: Cannot runscript POST-INSTALL:Bad file descriptor UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/binutils-2.33.1_2,1.txz pkg: Cannot runscript POST-INSTALL:Bad file descriptor Installing /packages/All/gcc8-8.4.0.txz pkg: Cannot runscript POST-INSTALL:Bad file descriptor ===== Message from gcc8-8.4.0: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/m4-1.4.18_1,1.txz pkg: Cannot runscript POST-INSTALL:Bad file descriptor Installing /packages/All/autoconf-wrapper-20131203.txz Installing /packages/All/perl5-5.30.1.txz pkg: Cannot runscript POST-INSTALL:Bad file descriptor ===== Message from perl5-5.30.1: -- The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. Installing /packages/All/autoconf-2.69_3.txz pkg: Cannot runscript POST-INSTALL:Bad file descriptor Installing /packages/All/automake-1.16.1_2.txz pkg: Cannot runscript POST-INSTALL:Bad file descriptor Installing /packages/All/libtool-2.4.6_1.txz pkg: Cannot runscript POST-INSTALL:Bad file descriptor Installing /packages/All/openblas-0.3.7_2,1.txz pkg: Cannot runscript POST-INSTALL:Bad file descriptor UNFLAVORED devel/binutils -> use devel/binutils@native UNFLAVORED devel/binutils -> use devel/binutils@native SUCCEEDED 00:00:16 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> adept-2.0.5_6 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> adept-2.0.5_6 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by adept-2.0.5_6 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> adept-2.0.5_6 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by adept-2.0.5_6 for building => SHA256 Checksum OK for adept-2.0.5.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> adept-2.0.5_6 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by adept-2.0.5_6 for building ===> Extracting for adept-2.0.5_6 => SHA256 Checksum OK for adept-2.0.5.tar.gz. Extracted Memory Use: 3.20M SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for adept-2.0.5_6 ===> Applying ports patches for adept-2.0.5_6 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> adept-2.0.5_6 depends on executable: gmake - found ===> adept-2.0.5_6 depends on executable: gfortran8 - found ===> adept-2.0.5_6 depends on file: /usr/local/bin/as - found ===> adept-2.0.5_6 depends on package: autoconf>=2.69 - found ===> adept-2.0.5_6 depends on package: automake>=1.16.1 - found ===> adept-2.0.5_6 depends on executable: libtoolize - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- ===> adept-2.0.5_6 depends on shared library: libopenblas.so - found (/usr/local/lib/libopenblas.so) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> adept-2.0.5_6 depends on executable: gmake - found ===> adept-2.0.5_6 depends on executable: gfortran8 - found ===> adept-2.0.5_6 depends on file: /usr/local/bin/as - found ===> adept-2.0.5_6 depends on package: autoconf>=2.69 - found ===> adept-2.0.5_6 depends on package: automake>=1.16.1 - found ===> adept-2.0.5_6 depends on executable: libtoolize - found ===> adept-2.0.5_6 depends on shared library: libopenblas.so - found (/usr/local/lib/libopenblas.so) ===> Configuring for adept-2.0.5_6 libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:17: installing './compile' configure.ac:10: installing './missing' adept/Makefile.am: installing './depcomp' configure: loading site script /xports/Templates/config.site checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... (cached) /bin/mkdir -p checking for gawk... (cached) /usr/bin/awk checking whether gmake sets $(MAKE)... yes checking whether gmake supports nested variables... yes checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether c++ accepts -g... yes checking whether gmake supports the include directive... yes (GNU style) checking dependency style of c++... gcc3 checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran8 accepts -g... yes checking whether gmake sets $(MAKE)... (cached) yes checking for gcc... cc checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking whether cc understands -c and -o together... yes checking dependency style of cc... gcc3 checking the archiver (/usr/local/bin/ar) interface... ar checking build system type... x86_64-portbld-dragonfly5.9 checking host system type... x86_64-portbld-dragonfly5.9 checking how to print strings... printf checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for fgrep... (cached) /usr/bin/fgrep checking for ld used by cc... /usr/local/bin/ld checking if the linker (/usr/local/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/local/bin/nm checking the name lister (/usr/local/bin/nm) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... (cached) 262144 checking how to convert x86_64-portbld-dragonfly5.9 file names to x86_64-portbld-dragonfly5.9 format... func_convert_file_noop checking how to convert x86_64-portbld-dragonfly5.9 file names to toolchain format... func_convert_file_noop checking for /usr/local/bin/ld option to reload object files... -r checking for objdump... /usr/local/bin/objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... /usr/local/bin/ranlib checking command to parse /usr/local/bin/nm output from cc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking how to run the C preprocessor... cpp checking for ANSI C header files... (cached) yes checking for sys/types.h... (cached) yes checking for sys/stat.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for memory.h... (cached) yes checking for strings.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for dlfcn.h... (cached) yes checking for objdir... .libs checking if cc supports -fno-rtti -fno-exceptions... no checking for cc option to produce PIC... -fPIC -DPIC checking if cc PIC flag -fPIC -DPIC works... yes checking if cc static flag -static works... yes checking if cc supports -c -o file.o... yes checking if cc supports -c -o file.o... (cached) yes checking whether the cc linker (/usr/local/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... dragonfly5.9 ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... c++ -E checking for ld used by c++... /usr/local/bin/ld checking if the linker (/usr/local/bin/ld) is GNU ld... yes checking whether the c++ linker (/usr/local/bin/ld) supports shared libraries... yes checking for c++ option to produce PIC... -fPIC -DPIC checking if c++ PIC flag -fPIC -DPIC works... yes checking if c++ static flag -static works... yes checking if c++ supports -c -o file.o... yes checking if c++ supports -c -o file.o... (cached) yes checking whether the c++ linker (/usr/local/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... dragonfly5.9 ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for gfortran8 option to produce PIC... -fPIC checking if gfortran8 PIC flag -fPIC works... yes checking if gfortran8 static flag -static works... yes checking if gfortran8 supports -c -o file.o... yes checking if gfortran8 supports -c -o file.o... (cached) yes checking whether the gfortran8 linker (/usr/local/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... dragonfly5.9 ld.so checking how to hardcode library paths into programs... immediate checking for sys/time.h... (cached) yes checking for gettimeofday... (cached) yes checking for pow... yes checking for sqrt... yes checking for c++ option to support OpenMP... -fopenmp checking how to get verbose linking output from gfortran8... -v checking for Fortran 77 libraries of gfortran8... -L/usr/local/lib/gcc8 -L/usr/local/lib -L/usr/local/bin -L/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0 -L/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../../../../x86_64-portbld-dragonfly5.9/lib -L/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../.. -lgfortran -lm -lquadmath checking for dummy main to link with Fortran 77 libraries... none checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore checking if sgemm_ is being linked in already... no checking for sgemm_ in -lopenblas... yes checking for cheev_... yes checking whether cblas.h is from OpenBLAS... no checking for gsl_multimin_fdfminimizer_alloc in -lgsl... no checking adolc/adolc.h usability... no checking adolc/adolc.h presence... no checking for adolc/adolc.h... no checking for tapestats in -ladolc... no checking whether Sacado is installed... no checking cppad/cppad.hpp usability... no checking cppad/cppad.hpp presence... no checking for cppad/cppad.hpp... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating makefile_include config.status: creating adept/Makefile config.status: creating include/Makefile config.status: creating benchmark/Makefile config.status: creating config.h config.status: creating config_platform_independent.h config.status: executing depfiles commands config.status: executing libtool commands configure: ********************* Summary ************************************** configure: CXX = c++ configure: CPPFLAGS = configure: CXXFLAGS = -pipe -O2 -fno-strict-aliasing -fopenmp configure: LDFLAGS = -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -L/usr/local/lib configure: LIBS = -lopenblas configure: Typing "make; make install" will install Adept header files in ${prefix}/include configure: and the static and shared libraries as ${exec_prefix}/lib/libadept.*, where configure: prefix=/usr/local configure: ********************* Libraries used by Adept ********************** configure: BLAS (Basic Linear Algebra Subprograms) will be used: BLAS_LIBS = -lopenblas configure: LAPACK (Linear Algebra Package) will be used: LAPACK_LIBS = configure: ********************* Libraries used by test programs ************** configure: GNU Scientific Library (GSL) not found; Adept will compile all the configure: example programs except test/test_gsl_interface. configure: ********************* Benchmark program **************************** configure: The benchmarking program, "benchmark/advection_benchmark", will be configure: compiled with support for these automatic differentiation libraries: configure: Adept: yes configure: ADOLC: no configure: CppAD: no configure: Sacado: no configure: ********************* Top tips ************************************* configure: To use a higher than default optimization level, call this configure configure: script with something like: ./configure "CXXFLAGS=-g -O3" configure: If you have libraries in non-standard locations, specify their location configure: by calling this script with something like: configure: ./configure CPPFLAGS=-I/local/include LDFLAGS="-L/local/lib -Wl,-rpath,/local/lib" configure: The rpath argument is especially useful for locating the BLAS and LAPACK configure: libraries if they are in non-standard locations, so that executables configure: built with Adept do not need to use the LD_LIBRARY_PATH environment configure: variable to specify their locations at run-time. configure: ******************************************************************** SUCCEEDED 00:00:32 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for adept-2.0.5_6 gmake[1]: Entering directory '/construction/math/adept/adept-2.0.5' gmake all-recursive gmake[2]: Entering directory '/construction/math/adept/adept-2.0.5' Making all in adept gmake[3]: Entering directory '/construction/math/adept/adept-2.0.5/adept' /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../include -fopenmp -pipe -O2 -fno-strict-aliasing -MT libadept_la-Array.lo -MD -MP -MF .deps/libadept_la-Array.Tpo -c -o libadept_la-Array.lo `test -f 'Array.cpp' || echo './'`Array.cpp /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../include -fopenmp -pipe -O2 -fno-strict-aliasing -MT libadept_la-Stack.lo -MD -MP -MF .deps/libadept_la-Stack.Tpo -c -o libadept_la-Stack.lo `test -f 'Stack.cpp' || echo './'`Stack.cpp /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../include -fopenmp -pipe -O2 -fno-strict-aliasing -MT libadept_la-StackStorageOrig.lo -MD -MP -MF .deps/libadept_la-StackStorageOrig.Tpo -c -o libadept_la-StackStorageOrig.lo `test -f 'StackStorageOrig.cpp' || echo './'`StackStorageOrig.cpp /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../include -fopenmp -pipe -O2 -fno-strict-aliasing -MT libadept_la-jacobian.lo -MD -MP -MF .deps/libadept_la-jacobian.Tpo -c -o libadept_la-jacobian.lo `test -f 'jacobian.cpp' || echo './'`jacobian.cpp /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../include -fopenmp -pipe -O2 -fno-strict-aliasing -MT libadept_la-Storage.lo -MD -MP -MF .deps/libadept_la-Storage.Tpo -c -o libadept_la-Storage.lo `test -f 'Storage.cpp' || echo './'`Storage.cpp /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../include -fopenmp -pipe -O2 -fno-strict-aliasing -MT libadept_la-index.lo -MD -MP -MF .deps/libadept_la-index.Tpo -c -o libadept_la-index.lo `test -f 'index.cpp' || echo './'`index.cpp /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../include -fopenmp -pipe -O2 -fno-strict-aliasing -MT libadept_la-settings.lo -MD -MP -MF .deps/libadept_la-settings.Tpo -c -o libadept_la-settings.lo `test -f 'settings.cpp' || echo './'`settings.cpp /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../include -fopenmp -pipe -O2 -fno-strict-aliasing -MT libadept_la-cppblas.lo -MD -MP -MF .deps/libadept_la-cppblas.Tpo -c -o libadept_la-cppblas.lo `test -f 'cppblas.cpp' || echo './'`cppblas.cpp /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../include -fopenmp -pipe -O2 -fno-strict-aliasing -MT libadept_la-solve.lo -MD -MP -MF .deps/libadept_la-solve.Tpo -c -o libadept_la-solve.lo `test -f 'solve.cpp' || echo './'`solve.cpp /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../include -fopenmp -pipe -O2 -fno-strict-aliasing -MT libadept_la-inv.lo -MD -MP -MF .deps/libadept_la-inv.Tpo -c -o libadept_la-inv.lo `test -f 'inv.cpp' || echo './'`inv.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../include -fopenmp -pipe -O2 -fno-strict-aliasing -MT libadept_la-Array.lo -MD -MP -MF .deps/libadept_la-Array.Tpo -c Array.cpp -fPIC -DPIC -o .libs/libadept_la-Array.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../include -fopenmp -pipe -O2 -fno-strict-aliasing -MT libadept_la-Storage.lo -MD -MP -MF .deps/libadept_la-Storage.Tpo -c Storage.cpp -fPIC -DPIC -o .libs/libadept_la-Storage.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../include -fopenmp -pipe -O2 -fno-strict-aliasing -MT libadept_la-index.lo -MD -MP -MF .deps/libadept_la-index.Tpo -c index.cpp -fPIC -DPIC -o .libs/libadept_la-index.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../include -fopenmp -pipe -O2 -fno-strict-aliasing -MT libadept_la-StackStorageOrig.lo -MD -MP -MF .deps/libadept_la-StackStorageOrig.Tpo -c StackStorageOrig.cpp -fPIC -DPIC -o .libs/libadept_la-StackStorageOrig.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../include -fopenmp -pipe -O2 -fno-strict-aliasing -MT libadept_la-settings.lo -MD -MP -MF .deps/libadept_la-settings.Tpo -c settings.cpp -fPIC -DPIC -o .libs/libadept_la-settings.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../include -fopenmp -pipe -O2 -fno-strict-aliasing -MT libadept_la-cppblas.lo -MD -MP -MF .deps/libadept_la-cppblas.Tpo -c cppblas.cpp -fPIC -DPIC -o .libs/libadept_la-cppblas.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../include -fopenmp -pipe -O2 -fno-strict-aliasing -MT libadept_la-Stack.lo -MD -MP -MF .deps/libadept_la-Stack.Tpo -c Stack.cpp -fPIC -DPIC -o .libs/libadept_la-Stack.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../include -fopenmp -pipe -O2 -fno-strict-aliasing -MT libadept_la-jacobian.lo -MD -MP -MF .deps/libadept_la-jacobian.Tpo -c jacobian.cpp -fPIC -DPIC -o .libs/libadept_la-jacobian.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../include -fopenmp -pipe -O2 -fno-strict-aliasing -MT libadept_la-solve.lo -MD -MP -MF .deps/libadept_la-solve.Tpo -c solve.cpp -fPIC -DPIC -o .libs/libadept_la-solve.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../include -fopenmp -pipe -O2 -fno-strict-aliasing -MT libadept_la-inv.lo -MD -MP -MF .deps/libadept_la-inv.Tpo -c inv.cpp -fPIC -DPIC -o .libs/libadept_la-inv.o mv -f .deps/libadept_la-StackStorageOrig.Tpo .deps/libadept_la-StackStorageOrig.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../include -fopenmp -pipe -O2 -fno-strict-aliasing -MT libadept_la-vector_utilities.lo -MD -MP -MF .deps/libadept_la-vector_utilities.Tpo -c -o libadept_la-vector_utilities.lo `test -f 'vector_utilities.cpp' || echo './'`vector_utilities.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../include -fopenmp -pipe -O2 -fno-strict-aliasing -MT libadept_la-vector_utilities.lo -MD -MP -MF .deps/libadept_la-vector_utilities.Tpo -c vector_utilities.cpp -fPIC -DPIC -o .libs/libadept_la-vector_utilities.o mv -f .deps/libadept_la-settings.Tpo .deps/libadept_la-settings.Plo mv -f .deps/libadept_la-cppblas.Tpo .deps/libadept_la-cppblas.Plo mv -f .deps/libadept_la-Storage.Tpo .deps/libadept_la-Storage.Plo mv -f .deps/libadept_la-Array.Tpo .deps/libadept_la-Array.Plo mv -f .deps/libadept_la-index.Tpo .deps/libadept_la-index.Plo mv -f .deps/libadept_la-jacobian.Tpo .deps/libadept_la-jacobian.Plo mv -f .deps/libadept_la-vector_utilities.Tpo .deps/libadept_la-vector_utilities.Plo mv -f .deps/libadept_la-Stack.Tpo .deps/libadept_la-Stack.Plo mv -f .deps/libadept_la-inv.Tpo .deps/libadept_la-inv.Plo mv -f .deps/libadept_la-solve.Tpo .deps/libadept_la-solve.Plo /bin/sh ../libtool --tag=CXX --mode=link c++ -fopenmp -pipe -O2 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -L/usr/local/lib -o libadept.la -rpath /usr/local/lib libadept_la-Array.lo libadept_la-Stack.lo libadept_la-StackStorageOrig.lo libadept_la-jacobian.lo libadept_la-Storage.lo libadept_la-index.lo libadept_la-settings.lo libadept_la-cppblas.lo libadept_la-solve.lo libadept_la-inv.lo libadept_la-vector_utilities.lo -lopenblas libtool: link: c++ -fPIC -DPIC -shared -nostdlib /usr/lib/crti.o /usr/lib/gcc80/crtbeginS.o .libs/libadept_la-Array.o .libs/libadept_la-Stack.o .libs/libadept_la-StackStorageOrig.o .libs/libadept_la-jacobian.o .libs/libadept_la-Storage.o .libs/libadept_la-index.o .libs/libadept_la-settings.o .libs/libadept_la-cppblas.o .libs/libadept_la-solve.o .libs/libadept_la-inv.o .libs/libadept_la-vector_utilities.o -L/usr/local/lib/gcc8 -L/usr/local/lib -lopenblas -L/usr/lib/gcc80 -lstdc++ -lm -lc -lgcc -lgcc_pic /usr/lib/gcc80/crtendS.o /usr/lib/crtn.o -fopenmp -O2 -Wl,-rpath=/usr/local/lib/gcc8 -B/usr/local/bin -fopenmp -Wl,-soname -Wl,libadept.so.0 -o .libs/libadept.so.0.0.0 /usr/local/bin/ld: /usr/lib/libc.so: .dynsym local symbol at index 8 (>= sh_info of 6) /usr/local/bin/ld: /usr/lib/gcc80/libgomp.so: .dynsym local symbol at index 6 (>= sh_info of 1) /usr/local/bin/ld: /usr/lib/gcc80/libgomp.so: .dynsym local symbol at index 38 (>= sh_info of 1) libtool: link: (cd ".libs" && rm -f "libadept.so.0" && ln -s "libadept.so.0.0.0" "libadept.so.0") libtool: link: (cd ".libs" && rm -f "libadept.so" && ln -s "libadept.so.0.0.0" "libadept.so") libtool: link: ( cd ".libs" && rm -f "libadept.la" && ln -s "../libadept.la" "libadept.la" ) gmake[3]: Leaving directory '/construction/math/adept/adept-2.0.5/adept' Making all in include gmake[3]: Entering directory '/construction/math/adept/adept-2.0.5/include' gmake[3]: Nothing to be done for 'all'. gmake[3]: Leaving directory '/construction/math/adept/adept-2.0.5/include' Making all in benchmark gmake[3]: Entering directory '/construction/math/adept/adept-2.0.5/benchmark' gmake[3]: Nothing to be done for 'all'. gmake[3]: Leaving directory '/construction/math/adept/adept-2.0.5/benchmark' Making all in test gmake[3]: Entering directory '/construction/math/adept/adept-2.0.5/test' ******************************************************** *** To compile test programs in test/ and benchmark/ *** *** type "make check" *** ******************************************************** gmake[3]: Leaving directory '/construction/math/adept/adept-2.0.5/test' gmake[3]: Entering directory '/construction/math/adept/adept-2.0.5' gmake[3]: Leaving directory '/construction/math/adept/adept-2.0.5' gmake[2]: Leaving directory '/construction/math/adept/adept-2.0.5' gmake[1]: Leaving directory '/construction/math/adept/adept-2.0.5' SUCCEEDED 00:00:11 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> adept-2.0.5_6 depends on executable: gfortran8 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for adept-2.0.5_6 ===> adept-2.0.5_6 depends on executable: gfortran8 - found ===> Generating temporary packing list gmake[1]: Entering directory '/construction/math/adept/adept-2.0.5' if test -z 'strip'; then \ gmake INSTALL_PROGRAM="/bin/sh /construction/math/adept/adept-2.0.5/install-sh -c -s" \ install_sh_PROGRAM="/bin/sh /construction/math/adept/adept-2.0.5/install-sh -c -s" INSTALL_STRIP_FLAG=-s \ install; \ else \ gmake INSTALL_PROGRAM="/bin/sh /construction/math/adept/adept-2.0.5/install-sh -c -s" \ install_sh_PROGRAM="/bin/sh /construction/math/adept/adept-2.0.5/install-sh -c -s" INSTALL_STRIP_FLAG=-s \ "INSTALL_PROGRAM_ENV=STRIPPROG='strip'" install; \ fi gmake[2]: Entering directory '/construction/math/adept/adept-2.0.5' Making install in adept gmake[3]: Entering directory '/construction/math/adept/adept-2.0.5/adept' gmake[4]: Entering directory '/construction/math/adept/adept-2.0.5/adept' /bin/mkdir -p '/construction/math/adept/stage/usr/local/lib' /bin/sh ../libtool --mode=install /usr/bin/install -c -s libadept.la '/construction/math/adept/stage/usr/local/lib' libtool: install: /usr/bin/install -c .libs/libadept.so.0.0.0 /construction/math/adept/stage/usr/local/lib/libadept.so.0.0.0 libtool: install: strip --strip-unneeded /construction/math/adept/stage/usr/local/lib/libadept.so.0.0.0 libtool: install: (cd /construction/math/adept/stage/usr/local/lib && { ln -s -f libadept.so.0.0.0 libadept.so.0 || { rm -f libadept.so.0 && ln -s libadept.so.0.0.0 libadept.so.0; }; }) libtool: install: (cd /construction/math/adept/stage/usr/local/lib && { ln -s -f libadept.so.0.0.0 libadept.so || { rm -f libadept.so && ln -s libadept.so.0.0.0 libadept.so; }; }) libtool: install: /usr/bin/install -c .libs/libadept.lai /construction/math/adept/stage/usr/local/lib/libadept.la libtool: warning: remember to run 'libtool --finish /usr/local/lib' gmake[4]: Nothing to be done for 'install-data-am'. gmake[4]: Leaving directory '/construction/math/adept/adept-2.0.5/adept' gmake[3]: Leaving directory '/construction/math/adept/adept-2.0.5/adept' Making install in include gmake[3]: Entering directory '/construction/math/adept/adept-2.0.5/include' gmake[4]: Entering directory '/construction/math/adept/adept-2.0.5/include' gmake[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/construction/math/adept/stage/usr/local/include' install -m 0644 adept.h adept_arrays.h '/construction/math/adept/stage/usr/local/include' /bin/mkdir -p '/construction/math/adept/stage/usr/local/include/adept' install -m 0644 adept/Active.h adept/ActiveReference.h adept/Allocator.h adept/Array.h adept/Expression.h adept/ExpressionSize.h adept/IndexedArray.h adept/matmul.h adept/RangeIndex.h adept/ScratchVector.h adept/SpecialMatrix.h adept/Stack.h adept/StackStorage.h adept/StackStorageOrig.h adept/StackStorageOrigStl.h adept/Statement.h adept/Storage.h adept/array_shortcuts.h adept/base.h adept/reduce.h adept/contiguous_matrix.h adept/exception.h adept/settings.h adept/interp.h adept/ActiveConstReference.h adept/cppblas.h adept/scalar_shortcuts.h adept/solve.h adept/traits.h adept/where.h adept/vector_utilities.h adept/FixedArray.h adept/Packet.h adept/UnaryOperation.h adept/BinaryOperation.h adept/ArrayWrapper.h adept/outer_product.h adept/spread.h adept/inv.h adept/eval.h '/construction/math/adept/stage/usr/local/include/adept' install -m 0644 adept/noalias.h adept/store_transpose.h '/construction/math/adept/stage/usr/local/include/adept' gmake[4]: Leaving directory '/construction/math/adept/adept-2.0.5/include' gmake[3]: Leaving directory '/construction/math/adept/adept-2.0.5/include' Making install in benchmark gmake[3]: Entering directory '/construction/math/adept/adept-2.0.5/benchmark' gmake[4]: Entering directory '/construction/math/adept/adept-2.0.5/benchmark' gmake[4]: Nothing to be done for 'install-exec-am'. gmake[4]: Nothing to be done for 'install-data-am'. gmake[4]: Leaving directory '/construction/math/adept/adept-2.0.5/benchmark' gmake[3]: Leaving directory '/construction/math/adept/adept-2.0.5/benchmark' Making install in test gmake[3]: Entering directory '/construction/math/adept/adept-2.0.5/test' gmake[3]: Nothing to be done for 'install'. gmake[3]: Leaving directory '/construction/math/adept/adept-2.0.5/test' gmake[3]: Entering directory '/construction/math/adept/adept-2.0.5' gmake[4]: Entering directory '/construction/math/adept/adept-2.0.5' gmake[4]: Nothing to be done for 'install-exec-am'. gmake[4]: Nothing to be done for 'install-data-am'. gmake[4]: Leaving directory '/construction/math/adept/adept-2.0.5' gmake[3]: Leaving directory '/construction/math/adept/adept-2.0.5' gmake[2]: Leaving directory '/construction/math/adept/adept-2.0.5' gmake[1]: Leaving directory '/construction/math/adept/adept-2.0.5' ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Error: /usr/local/lib/libadept.so.0.0.0 is linked to /usr/local/lib/libopenblas.so which does not have a SONAME. math/openblas needs to be fixed. Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for adept-2.0.5_6 file sizes/checksums [47]: 0% file sizes/checksums [47]: 100% packing files [47]: 0% packing files [47]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:02 TOTAL TIME 00:01:04