------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/expat-2.2.6_1.tgz Installing /packages/All/indexinfo-0.3.1.tgz Installing /packages/All/libffi-3.2.1_3.tgz Installing /packages/All/ncurses-6.1.20190525.tgz Installing /packages/All/readline-8.0.0.tgz Installing /packages/All/gettext-runtime-0.20.1.tgz Installing /packages/All/openssl-1.0.2s,1.tgz Message from openssl-1.0.2s,1: Edit /usr/local/openssl/openssl.cnf to fit your needs. Installing /packages/All/python36-3.6.9.tgz Message from python36-3.6.9: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py36-gdbm databases/py-gdbm@py36 py36-sqlite3 databases/py-sqlite3@py36 py36-tkinter x11-toolkits/py-tkinter@py36 =========================================================================== Installing /packages/All/py36-setuptools-41.0.1.tgz Installing /packages/All/metis-5.1.0_8.tgz Message from metis-5.1.0_8: ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Installing /packages/All/gmp-6.1.2_1.tgz Installing /packages/All/mpfr-4.0.2.tgz Installing /packages/All/mpc-1.1.0_2.tgz Installing /packages/All/binutils-2.32_1,1.tgz Installing /packages/All/gcc8-8.3.0_3.tgz Message from gcc8-8.3.0_3: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/blas-3.5.0_6.tgz Installing /packages/All/lapack-3.5.0_8.tgz Installing /packages/All/openblas-0.2.20_10,1.tgz Installing /packages/All/suitesparse-5.2.0_4.tgz Installing /packages/All/py36-numpy-1.16.4_1,1.tgz Installing /packages/All/py36-six-1.12.0.tgz Installing /packages/All/py36-dateutil-2.8.0.tgz Installing /packages/All/py36-pytz-2019.1,1.tgz Installing /packages/All/sqlite3-3.29.0.tgz Installing /packages/All/py36-sqlite3-3.6.9_7.tgz Installing /packages/All/py36-bottleneck-1.2.1_5.tgz Installing /packages/All/py36-numexpr-2.6.9_1.tgz Installing /packages/All/py36-pandas-0.24.2_1.tgz Message from py36-pandas-0.24.2_1: === Install math/py-statsmodels to enable parts of pandas.stats. Install devel/py-xarray to enable the to_xarray() function. === SUCCEEDED 00:00:15 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- x===> Fetching all distfiles required by py36-gtfparse-1.2.0_2 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- x===> Fetching all distfiles required by py36-gtfparse-1.2.0_2 for building => SHA256 Checksum OK for gtfparse-1.2.0.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- x===> Fetching all distfiles required by py36-gtfparse-1.2.0_2 for building ===> Extracting for py36-gtfparse-1.2.0_2 => SHA256 Checksum OK for gtfparse-1.2.0.tar.gz. Extracted Memory Use: 0.10M SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- x===> Patching for py36-gtfparse-1.2.0_2 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- x===> Configuring for py36-gtfparse-1.2.0_2 No module named 'pypandoc' Failed to convert README.md from Markdown to reStructuredText running config SUCCEEDED 00:00:02 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- x===> Building for py36-gtfparse-1.2.0_2 No module named 'pypandoc' Failed to convert README.md from Markdown to reStructuredText running build running build_py creating build creating build/lib creating build/lib/gtfparse copying gtfparse/__init__.py -> build/lib/gtfparse copying gtfparse/required_columns.py -> build/lib/gtfparse copying gtfparse/parsing_error.py -> build/lib/gtfparse copying gtfparse/attribute_parsing.py -> build/lib/gtfparse copying gtfparse/create_missing_features.py -> build/lib/gtfparse copying gtfparse/read_gtf.py -> build/lib/gtfparse SUCCEEDED 00:00:04 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- x===> Staging for py36-gtfparse-1.2.0_2 ===> Generating temporary packing list No module named 'pypandoc' Failed to convert README.md from Markdown to reStructuredText running install running build running build_py running install_lib creating /construction/biology/py-gtfparse/stage/usr/local/lib/python3.6 creating /construction/biology/py-gtfparse/stage/usr/local/lib/python3.6/site-packages creating /construction/biology/py-gtfparse/stage/usr/local/lib/python3.6/site-packages/gtfparse copying build/lib/gtfparse/attribute_parsing.py -> /construction/biology/py-gtfparse/stage/usr/local/lib/python3.6/site-packages/gtfparse copying build/lib/gtfparse/__init__.py -> /construction/biology/py-gtfparse/stage/usr/local/lib/python3.6/site-packages/gtfparse copying build/lib/gtfparse/read_gtf.py -> /construction/biology/py-gtfparse/stage/usr/local/lib/python3.6/site-packages/gtfparse copying build/lib/gtfparse/required_columns.py -> /construction/biology/py-gtfparse/stage/usr/local/lib/python3.6/site-packages/gtfparse copying build/lib/gtfparse/create_missing_features.py -> /construction/biology/py-gtfparse/stage/usr/local/lib/python3.6/site-packages/gtfparse copying build/lib/gtfparse/parsing_error.py -> /construction/biology/py-gtfparse/stage/usr/local/lib/python3.6/site-packages/gtfparse byte-compiling /construction/biology/py-gtfparse/stage/usr/local/lib/python3.6/site-packages/gtfparse/attribute_parsing.py to attribute_parsing.cpython-36.pyc byte-compiling /construction/biology/py-gtfparse/stage/usr/local/lib/python3.6/site-packages/gtfparse/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/biology/py-gtfparse/stage/usr/local/lib/python3.6/site-packages/gtfparse/read_gtf.py to read_gtf.cpython-36.pyc byte-compiling /construction/biology/py-gtfparse/stage/usr/local/lib/python3.6/site-packages/gtfparse/required_columns.py to required_columns.cpython-36.pyc byte-compiling /construction/biology/py-gtfparse/stage/usr/local/lib/python3.6/site-packages/gtfparse/create_missing_features.py to create_missing_features.cpython-36.pyc byte-compiling /construction/biology/py-gtfparse/stage/usr/local/lib/python3.6/site-packages/gtfparse/parsing_error.py to parsing_error.cpython-36.pyc writing byte-compilation script '/tmp/tmpra7_e8ur.py' /usr/local/bin/python3.6 /tmp/tmpra7_e8ur.py removing /tmp/tmpra7_e8ur.py running install_egg_info running egg_info writing gtfparse.egg-info/PKG-INFO writing dependency_links to gtfparse.egg-info/dependency_links.txt writing requirements to gtfparse.egg-info/requires.txt writing top-level names to gtfparse.egg-info/top_level.txt reading manifest file 'gtfparse.egg-info/SOURCES.txt' writing manifest file 'gtfparse.egg-info/SOURCES.txt' Copying gtfparse.egg-info to /construction/biology/py-gtfparse/stage/usr/local/lib/python3.6/site-packages/gtfparse-1.2.0-py3.6.egg-info running install_scripts writing list of installed files to '/construction/biology/py-gtfparse/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:02 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- x====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- x===> Building package for py36-gtfparse-1.2.0_2 file sizes/checksums [23]: 0% file sizes/checksums [23]: 100% packing files [23]: 0% packing files [23]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:00 TOTAL TIME 00:00:26