------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/expat-2.2.8.txz pkg: Cannot runscript POST-INSTALL:Bad file descriptor Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/libffi-3.2.1_3.txz pkg: Cannot runscript POST-INSTALL:Bad file descriptor Installing /packages/All/ncurses-6.1.20190525.txz pkg: Cannot runscript POST-INSTALL:Bad file descriptor Installing /packages/All/readline-8.0.4.txz pkg: Cannot runscript POST-INSTALL:Bad file descriptor Installing /packages/All/gettext-runtime-0.20.1.txz pkg: Cannot runscript POST-INSTALL:Bad file descriptor Installing /packages/All/openssl-1.1.1d,1.txz pkg: Cannot runscript POST-INSTALL:Bad file descriptor Installing /packages/All/python27-2.7.17_1.txz pkg: Cannot runscript POST-INSTALL:Bad file descriptor ===== Message from python27-2.7.17_1: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter Installing /packages/All/py27-setuptools-44.0.0.txz pkg: Cannot runscript POST-INSTALL:Bad file descriptor ===== Message from py27-setuptools-44.0.0: -- Only /usr/local/bin/easy_install-2.7 script has been installed since Python 2.7 is not the default Python version. Installing /packages/All/py27-six-1.14.0.txz Installing /packages/All/py27-more-itertools5-5.0.0.txz Installing /packages/All/py27-zipp-0.6.0_3.txz Installing /packages/All/py27-backports-1.txz Installing /packages/All/py27-configparser-3.5.3_1,1.txz Installing /packages/All/py27-contextlib2-0.6.0.txz Installing /packages/All/py27-scandir-1.10.0_1.txz Installing /packages/All/py27-pathlib2-2.3.5.txz Installing /packages/All/py27-importlib-metadata-0.23.txz Installing /packages/All/py27-argcomplete-1.11.1.txz Installing /packages/All/py27-argh-0.26.2.txz Installing /packages/All/py27-pyfaidx-0.5.5.2_1.txz Installing /packages/All/py27-simplejson-3.17.0.txz SUCCEEDED 00:00:05 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> py27-gffutils-0.10 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> py27-gffutils-0.10 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py27-gffutils-0.10 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> py27-gffutils-0.10 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py27-gffutils-0.10 for building => SHA256 Checksum OK for gffutils-0.10.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> py27-gffutils-0.10 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py27-gffutils-0.10 for building ===> Extracting for py27-gffutils-0.10 => SHA256 Checksum OK for gffutils-0.10.tar.gz. Extracted Memory Use: 9.55M SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for py27-gffutils-0.10 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> py27-gffutils-0.10 depends on package: py27-setuptools>0 - found ===> py27-gffutils-0.10 depends on file: /usr/local/bin/python2.7 - found SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> py27-gffutils-0.10 depends on package: py27-setuptools>0 - found ===> py27-gffutils-0.10 depends on file: /usr/local/bin/python2.7 - found ===> Configuring for py27-gffutils-0.10 running config SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for py27-gffutils-0.10 running build running build_py creating build creating build/lib creating build/lib/gffutils copying gffutils/constants.py -> build/lib/gffutils copying gffutils/gffwriter.py -> build/lib/gffutils copying gffutils/biopython_integration.py -> build/lib/gffutils copying gffutils/create.py -> build/lib/gffutils copying gffutils/exceptions.py -> build/lib/gffutils copying gffutils/inspect.py -> build/lib/gffutils copying gffutils/iterators.py -> build/lib/gffutils copying gffutils/pybedtools_integration.py -> build/lib/gffutils copying gffutils/merge_criteria.py -> build/lib/gffutils copying gffutils/convert.py -> build/lib/gffutils copying gffutils/__init__.py -> build/lib/gffutils copying gffutils/bins.py -> build/lib/gffutils copying gffutils/parser.py -> build/lib/gffutils copying gffutils/helpers.py -> build/lib/gffutils copying gffutils/interface.py -> build/lib/gffutils copying gffutils/attributes.py -> build/lib/gffutils copying gffutils/feature.py -> build/lib/gffutils copying gffutils/version.py -> build/lib/gffutils package init file 'gffutils/scripts/__init__.py' not found (or not a regular file) creating build/lib/gffutils/scripts copying gffutils/scripts/gffutils-flybase-convert.py -> build/lib/gffutils/scripts creating build/lib/gffutils/test copying gffutils/test/test.py -> build/lib/gffutils/test copying gffutils/test/helpers_test.py -> build/lib/gffutils/test copying gffutils/test/expected.py -> build/lib/gffutils/test copying gffutils/test/test_merge_all.py -> build/lib/gffutils/test copying gffutils/test/test_merge.py -> build/lib/gffutils/test copying gffutils/test/test_biopython_integration.py -> build/lib/gffutils/test copying gffutils/test/attr_test_cases.py -> build/lib/gffutils/test copying gffutils/test/feature_test.py -> build/lib/gffutils/test copying gffutils/test/__init__.py -> build/lib/gffutils/test copying gffutils/test/parser_test.py -> build/lib/gffutils/test copying gffutils/test/performance_test.py -> build/lib/gffutils/test copying gffutils/test/synth_test_base.py -> build/lib/gffutils/test package init file 'gffutils/test/data/__init__.py' not found (or not a regular file) creating build/lib/gffutils/test/data copying gffutils/test/data/ncbi_gff3.txt -> build/lib/gffutils/test/data copying gffutils/test/data/gff_example1.gff3 -> build/lib/gffutils/test/data copying gffutils/test/data/wormbase_gff2.txt -> build/lib/gffutils/test/data copying gffutils/test/data/wormbase_gff2_alt.txt -> build/lib/gffutils/test/data copying gffutils/test/data/keyval_sep_in_attrs.gff -> build/lib/gffutils/test/data copying gffutils/test/data/jgi_gff2.txt -> build/lib/gffutils/test/data copying gffutils/test/data/ensembl_gtf.txt -> build/lib/gffutils/test/data copying gffutils/test/data/c_elegans_WS199_dna_shortened.fa -> build/lib/gffutils/test/data copying gffutils/test/data/c_elegans_WS199_shortened_gff.txt -> build/lib/gffutils/test/data copying gffutils/test/data/FBgn0031208.gtf -> build/lib/gffutils/test/data copying gffutils/test/data/gencode-v19.gtf -> build/lib/gffutils/test/data copying gffutils/test/data/download-large-annotation-files.sh -> build/lib/gffutils/test/data copying gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_gene_ids.txt -> build/lib/gffutils/test/data copying gffutils/test/data/dmel-all-no-analysis-r5.49_50k_lines.gff -> build/lib/gffutils/test/data copying gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_transcript_ids.txt -> build/lib/gffutils/test/data copying gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.chromsizes.txt -> build/lib/gffutils/test/data copying gffutils/test/data/F3-unique-3.v2.gff -> build/lib/gffutils/test/data copying gffutils/test/data/unsanitized.gff -> build/lib/gffutils/test/data copying gffutils/test/data/gff_example1.gff3.gz -> build/lib/gffutils/test/data copying gffutils/test/data/c_elegans_WS199_ann_gff.txt -> build/lib/gffutils/test/data copying gffutils/test/data/keep-order-test.gtf -> build/lib/gffutils/test/data copying gffutils/test/data/synthetic.gff3 -> build/lib/gffutils/test/data copying gffutils/test/data/mouse_extra_comma.gff3 -> build/lib/gffutils/test/data copying gffutils/test/data/FBgn0031208.gff -> build/lib/gffutils/test/data copying gffutils/test/data/gencode.vM8.5000_gene_ids.txt -> build/lib/gffutils/test/data copying gffutils/test/data/hybrid1.gff3 -> build/lib/gffutils/test/data copying gffutils/test/data/gencode.vM8.5000_transcript_ids.txt -> build/lib/gffutils/test/data copying gffutils/test/data/glimmer_nokeyval.gff3 -> build/lib/gffutils/test/data copying gffutils/test/data/dm6-chr2L.fa -> build/lib/gffutils/test/data copying gffutils/test/data/random-chr.gff -> build/lib/gffutils/test/data copying gffutils/test/data/nonascii -> build/lib/gffutils/test/data copying gffutils/test/data/intro_docs_example.gff -> build/lib/gffutils/test/data copying gffutils/test/data/gencode.vM8.chromsizes.txt -> build/lib/gffutils/test/data running build_scripts creating build/scripts-2.7 copying and adjusting gffutils/scripts/gffutils-cli -> build/scripts-2.7 changing mode of build/scripts-2.7/gffutils-cli from 644 to 755 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> py27-gffutils-0.10 depends on package: py27-argcomplete>=1.9.4 - found ===> py27-gffutils-0.10 depends on package: py27-argh>=0.26.2 - found ===> py27-gffutils-0.10 depends on package: py27-pyfaidx>=0.5.5.2 - found ===> py27-gffutils-0.10 depends on package: py27-simplejson>0 - found ===> py27-gffutils-0.10 depends on package: py27-six>=1.12.0 - found ===> py27-gffutils-0.10 depends on package: py27-setuptools>0 - found ===> py27-gffutils-0.10 depends on file: /usr/local/bin/python2.7 - found SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for py27-gffutils-0.10 ===> py27-gffutils-0.10 depends on package: py27-argcomplete>=1.9.4 - found ===> py27-gffutils-0.10 depends on package: py27-argh>=0.26.2 - found ===> py27-gffutils-0.10 depends on package: py27-pyfaidx>=0.5.5.2 - found ===> py27-gffutils-0.10 depends on package: py27-simplejson>0 - found ===> py27-gffutils-0.10 depends on package: py27-six>=1.12.0 - found ===> py27-gffutils-0.10 depends on package: py27-setuptools>0 - found ===> py27-gffutils-0.10 depends on file: /usr/local/bin/python2.7 - found ===> Generating temporary packing list running install running build running build_py package init file 'gffutils/scripts/__init__.py' not found (or not a regular file) package init file 'gffutils/test/data/__init__.py' not found (or not a regular file) running build_scripts running install_lib creating /construction/biology/py-gffutils/stage/usr/local/lib/python2.7 creating /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages creating /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils copying build/lib/gffutils/feature.py -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils copying build/lib/gffutils/inspect.py -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils copying build/lib/gffutils/helpers.py -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils copying build/lib/gffutils/pybedtools_integration.py -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils copying build/lib/gffutils/bins.py -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils copying build/lib/gffutils/version.py -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils copying build/lib/gffutils/gffwriter.py -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils copying build/lib/gffutils/parser.py -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils copying build/lib/gffutils/__init__.py -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils creating /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/scripts copying build/lib/gffutils/scripts/gffutils-flybase-convert.py -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/scripts copying build/lib/gffutils/exceptions.py -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils copying build/lib/gffutils/constants.py -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils copying build/lib/gffutils/attributes.py -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils copying build/lib/gffutils/convert.py -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils copying build/lib/gffutils/iterators.py -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils copying build/lib/gffutils/create.py -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils copying build/lib/gffutils/merge_criteria.py -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils creating /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/test copying build/lib/gffutils/test/test_biopython_integration.py -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/test copying build/lib/gffutils/test/attr_test_cases.py -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/test copying build/lib/gffutils/test/performance_test.py -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/test creating /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/unsanitized.gff -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/hybrid1.gff3 -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/glimmer_nokeyval.gff3 -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/ensembl_gtf.txt -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/gencode.vM8.5000_transcript_ids.txt -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/nonascii -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/FBgn0031208.gff -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/gencode-v19.gtf -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/gff_example1.gff3.gz -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/wormbase_gff2.txt -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/gencode.vM8.5000_gene_ids.txt -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_transcript_ids.txt -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/keep-order-test.gtf -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/wormbase_gff2_alt.txt -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/F3-unique-3.v2.gff -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/intro_docs_example.gff -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/download-large-annotation-files.sh -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/dmel-all-no-analysis-r5.49_50k_lines.gff -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/c_elegans_WS199_dna_shortened.fa -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/gencode.vM8.chromsizes.txt -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/ncbi_gff3.txt -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/random-chr.gff -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/dm6-chr2L.fa -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/mouse_extra_comma.gff3 -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/synthetic.gff3 -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/jgi_gff2.txt -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/FBgn0031208.gtf -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/gff_example1.gff3 -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/keyval_sep_in_attrs.gff -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/c_elegans_WS199_ann_gff.txt -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.chromsizes.txt -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/c_elegans_WS199_shortened_gff.txt -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_gene_ids.txt -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/test/data copying build/lib/gffutils/test/helpers_test.py -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/test copying build/lib/gffutils/test/test.py -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/test copying build/lib/gffutils/test/parser_test.py -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/test copying build/lib/gffutils/test/test_merge.py -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/test copying build/lib/gffutils/test/__init__.py -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/test copying build/lib/gffutils/test/feature_test.py -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/test copying build/lib/gffutils/test/test_merge_all.py -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/test copying build/lib/gffutils/test/synth_test_base.py -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/test copying build/lib/gffutils/test/expected.py -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/test copying build/lib/gffutils/interface.py -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils copying build/lib/gffutils/biopython_integration.py -> /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils byte-compiling /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/feature.py to feature.pyc byte-compiling /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/inspect.py to inspect.pyc byte-compiling /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/helpers.py to helpers.pyc byte-compiling /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/pybedtools_integration.py to pybedtools_integration.pyc byte-compiling /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/bins.py to bins.pyc byte-compiling /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/version.py to version.pyc byte-compiling /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/gffwriter.py to gffwriter.pyc byte-compiling /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/parser.py to parser.pyc byte-compiling /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/__init__.py to __init__.pyc byte-compiling /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/scripts/gffutils-flybase-convert.py to gffutils-flybase-convert.pyc byte-compiling /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/exceptions.py to exceptions.pyc byte-compiling /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/constants.py to constants.pyc byte-compiling /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/attributes.py to attributes.pyc byte-compiling /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/convert.py to convert.pyc byte-compiling /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/iterators.py to iterators.pyc byte-compiling /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/create.py to create.pyc byte-compiling /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/merge_criteria.py to merge_criteria.pyc byte-compiling /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/test/test_biopython_integration.py to test_biopython_integration.pyc byte-compiling /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/test/attr_test_cases.py to attr_test_cases.pyc byte-compiling /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/test/performance_test.py to performance_test.pyc byte-compiling /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/test/helpers_test.py to helpers_test.pyc byte-compiling /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/test/test.py to test.pyc byte-compiling /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/test/parser_test.py to parser_test.pyc byte-compiling /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/test/test_merge.py to test_merge.pyc byte-compiling /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/test/__init__.py to __init__.pyc byte-compiling /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/test/feature_test.py to feature_test.pyc byte-compiling /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/test/test_merge_all.py to test_merge_all.pyc byte-compiling /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/test/synth_test_base.py to synth_test_base.pyc byte-compiling /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/test/expected.py to expected.pyc byte-compiling /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/interface.py to interface.pyc byte-compiling /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils/biopython_integration.py to biopython_integration.pyc writing byte-compilation script '/tmp/tmpZKTQjG.py' /usr/local/bin/python2.7 -O /tmp/tmpZKTQjG.py removing /tmp/tmpZKTQjG.py running install_egg_info running egg_info writing requirements to gffutils.egg-info/requires.txt writing gffutils.egg-info/PKG-INFO writing top-level names to gffutils.egg-info/top_level.txt writing dependency_links to gffutils.egg-info/dependency_links.txt reading manifest file 'gffutils.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.rst' under directory 'docs/source' warning: no files found matching '*.py' under directory 'docs/source' warning: no files found matching '*' under directory 'docs/source/images' warning: no files found matching 'docs/Makefile' warning: no files found matching 'docs/make.bat' warning: no files found matching 'gffutils/test/data/__init__.py' warning: no files found matching 'gffutils/test/data/t.py' writing manifest file 'gffutils.egg-info/SOURCES.txt' Copying gffutils.egg-info to /construction/biology/py-gffutils/stage/usr/local/lib/python2.7/site-packages/gffutils-0.10-py2.7.egg-info running install_scripts copying build/scripts-2.7/gffutils-cli -> /construction/biology/py-gffutils/stage/usr/local/bin changing mode of /construction/biology/py-gffutils/stage/usr/local/bin/gffutils-cli to 755 writing list of installed files to '/construction/biology/py-gffutils/.PLIST.pymodtmp' ===> Creating unique files: Move MAN files needing SUFFIX ===> Creating unique files: Move files needing SUFFIX Move: bin/gffutils-cli --> bin/gffutils-cli-2.7 ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for py27-gffutils-0.10 file sizes/checksums [132]: 0% file sizes/checksums [132]: 75% file sizes/checksums [132]: 100% packing files [132]: 0% packing files [132]: 75% packing files [132]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:08 TOTAL TIME 00:00:16