------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/gettext-runtime-0.20.1.txz pkg: Cannot runscript POST-INSTALL:Bad file descriptor Installing /packages/All/gmake-4.2.1_3.txz pkg: Cannot runscript POST-INSTALL:Bad file descriptor SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> prodigal-2.6.3.7 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> prodigal-2.6.3.7 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by prodigal-2.6.3.7 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> prodigal-2.6.3.7 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by prodigal-2.6.3.7 for building => SHA256 Checksum OK for hyattpd-Prodigal-v2.6.3-7-ga78ed3f_GH0.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> prodigal-2.6.3.7 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by prodigal-2.6.3.7 for building ===> Extracting for prodigal-2.6.3.7 => SHA256 Checksum OK for hyattpd-Prodigal-v2.6.3-7-ga78ed3f_GH0.tar.gz. Extracted Memory Use: 24.82M SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for prodigal-2.6.3.7 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> prodigal-2.6.3.7 depends on executable: gmake - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> prodigal-2.6.3.7 depends on executable: gmake - found ===> Configuring for prodigal-2.6.3.7 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for prodigal-2.6.3.7 gmake[1]: Entering directory '/construction/biology/prodigal/Prodigal-2.6.3-7-ga78ed3f' gcc -pipe -O2 -fno-strict-aliasing -pedantic -Wall -O3 -DSUPPORT_GZIP_COMPRESSED -c -o bitmap.o bitmap.c gcc -pipe -O2 -fno-strict-aliasing -pedantic -Wall -O3 -DSUPPORT_GZIP_COMPRESSED -c -o dprog.o dprog.c gcc -pipe -O2 -fno-strict-aliasing -pedantic -Wall -O3 -DSUPPORT_GZIP_COMPRESSED -c -o gene.o gene.c gcc -pipe -O2 -fno-strict-aliasing -pedantic -Wall -O3 -DSUPPORT_GZIP_COMPRESSED -c -o main.o main.c gcc -pipe -O2 -fno-strict-aliasing -pedantic -Wall -O3 -DSUPPORT_GZIP_COMPRESSED -c -o metagenomic.o metagenomic.c gcc -pipe -O2 -fno-strict-aliasing -pedantic -Wall -O3 -DSUPPORT_GZIP_COMPRESSED -c -o node.o node.c gcc -pipe -O2 -fno-strict-aliasing -pedantic -Wall -O3 -DSUPPORT_GZIP_COMPRESSED -c -o sequence.o sequence.c gcc -pipe -O2 -fno-strict-aliasing -pedantic -Wall -O3 -DSUPPORT_GZIP_COMPRESSED -c -o training.o training.c gcc -pipe -O2 -fno-strict-aliasing -pedantic -Wall -O3 -DSUPPORT_GZIP_COMPRESSED -o prodigal bitmap.o dprog.o gene.o main.o metagenomic.o node.o sequence.o training.o -lm -lz gmake[1]: Leaving directory '/construction/biology/prodigal/Prodigal-2.6.3-7-ga78ed3f' SUCCEEDED 00:06:36 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for prodigal-2.6.3.7 ===> Generating temporary packing list gmake[1]: Entering directory '/construction/biology/prodigal/Prodigal-2.6.3-7-ga78ed3f' install -d -m 0755 /construction/biology/prodigal/stage/usr/local/bin install -m 0755 prodigal /construction/biology/prodigal/stage/usr/local/bin gmake[1]: Leaving directory '/construction/biology/prodigal/Prodigal-2.6.3-7-ga78ed3f' ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for prodigal-2.6.3.7 file sizes/checksums [1]: 0% file sizes/checksums [1]: 100% packing files [1]: 0% packing files [1]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:05 TOTAL TIME 00:06:42