------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/gettext-runtime-0.20.2.txz Installing /packages/All/gmake-4.3_2.txz SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> smithwaterman-g20160702 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> smithwaterman-g20160702 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by smithwaterman-g20160702 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> smithwaterman-g20160702 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by smithwaterman-g20160702 for building => SHA256 Checksum OK for ekg-smithwaterman-g20160702-2610e259611ae4cde8f03c72499d28f03f6d38a7_GH0.tar.gz. SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> smithwaterman-g20160702 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by smithwaterman-g20160702 for building ===> Extracting for smithwaterman-g20160702 => SHA256 Checksum OK for ekg-smithwaterman-g20160702-2610e259611ae4cde8f03c72499d28f03f6d38a7_GH0.tar.gz. Extracted Memory Use: 0.21M SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for smithwaterman-g20160702 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> smithwaterman-g20160702 depends on package: gmake>=4.3 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> smithwaterman-g20160702 depends on package: gmake>=4.3 - found ===> Configuring for smithwaterman-g20160702 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for smithwaterman-g20160702 gmake[1]: Entering directory '/construction/biology/smithwaterman/smithwaterman-2610e259611ae4cde8f03c72499d28f03f6d38a7' c++ -pipe -O2 -fno-strict-aliasing -fPIC -c -o disorder.o disorder.cpp -I. c++ -pipe -O2 -fno-strict-aliasing -fPIC -c -o BandedSmithWaterman.o BandedSmithWaterman.cpp -I. c++ -pipe -O2 -fno-strict-aliasing -fPIC -c -o Repeats.o Repeats.cpp -I. c++ -pipe -O2 -fno-strict-aliasing -fPIC -c -o LeftAlign.o LeftAlign.cpp -I. c++ -pipe -O2 -fno-strict-aliasing -fPIC -c -o IndelAllele.o IndelAllele.cpp -I. c++ -pipe -O2 -fno-strict-aliasing -fPIC -c -o smithwaterman.o smithwaterman.cpp -I. c++ -pipe -O2 -fno-strict-aliasing -fPIC -c -o SmithWatermanGotoh.o SmithWatermanGotoh.cpp -I. c++ -pipe -O2 -fno-strict-aliasing smithwaterman.o BandedSmithWaterman.o SmithWatermanGotoh.o Repeats.o LeftAlign.o IndelAllele.o disorder.o -I. -o smithwaterman ar rs libsw.a disorder.o BandedSmithWaterman.o SmithWatermanGotoh.o Repeats.o LeftAlign.o IndelAllele.o c++ -shared -Wl,-soname,libsw.so.1 -o libsw.so.1 disorder.o BandedSmithWaterman.o SmithWatermanGotoh.o Repeats.o LeftAlign.o IndelAllele.o ld -r disorder.o BandedSmithWaterman.o SmithWatermanGotoh.o Repeats.o LeftAlign.o IndelAllele.o -o sw.o -L. /usr/libexec/binutils227/elf/ar: creating libsw.a gmake[1]: Leaving directory '/construction/biology/smithwaterman/smithwaterman-2610e259611ae4cde8f03c72499d28f03f6d38a7' SUCCEEDED 00:00:05 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for smithwaterman-g20160702 ===> Generating temporary packing list gmake[1]: Entering directory '/construction/biology/smithwaterman/smithwaterman-2610e259611ae4cde8f03c72499d28f03f6d38a7' mkdir -p /construction/biology/smithwaterman/stage/usr/local/bin mkdir -p /construction/biology/smithwaterman/stage/usr/local/include/smithwaterman mkdir -p /construction/biology/smithwaterman/stage/usr/local/lib install -c smithwaterman /construction/biology/smithwaterman/stage/usr/local/bin install -c *.h /construction/biology/smithwaterman/stage/usr/local/include/smithwaterman install -c libsw.a libsw.so.1 /construction/biology/smithwaterman/stage/usr/local/lib strip /construction/biology/smithwaterman/stage/usr/local/bin/smithwaterman /construction/biology/smithwaterman/stage/usr/local/lib/libsw.so.1 gmake[1]: Leaving directory '/construction/biology/smithwaterman/smithwaterman-2610e259611ae4cde8f03c72499d28f03f6d38a7' /bin/sh /xports/Mk/Scripts/relative_link.sh /construction/biology/smithwaterman/stage/usr/local/lib/libsw.so.1 /construction/biology/smithwaterman/stage/usr/local/lib/libsw.so ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for smithwaterman-g20160702 file sizes/checksums [12]: 0% file sizes/checksums [12]: 100% packing files [12]: 0% packing files [12]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:00 TOTAL TIME 00:00:07