------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/libffi-3.3.txz Installing /packages/All/expat-2.2.8.txz Installing /packages/All/ncurses-6.1.20190525.txz Installing /packages/All/readline-8.0.4.txz Installing /packages/All/gettext-runtime-0.20.2.txz Installing /packages/All/openssl-1.1.1g,1.txz Installing /packages/All/python37-3.7.8_1.txz ===== Message from python37-3.7.8_1: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py37-gdbm databases/py-gdbm@py37 py37-sqlite3 databases/py-sqlite3@py37 py37-tkinter x11-toolkits/py-tkinter@py37 Installing /packages/All/py37-setuptools-44.0.0.txz SUCCEEDED 00:00:05 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> py37-xenaPython-1.0.10 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> py37-xenaPython-1.0.10 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py37-xenaPython-1.0.10 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> py37-xenaPython-1.0.10 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py37-xenaPython-1.0.10 for building => SHA256 Checksum OK for xenaPython-1.0.10.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> py37-xenaPython-1.0.10 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py37-xenaPython-1.0.10 for building ===> Extracting for py37-xenaPython-1.0.10 => SHA256 Checksum OK for xenaPython-1.0.10.tar.gz. Extracted Memory Use: 0.21M SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for py37-xenaPython-1.0.10 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> py37-xenaPython-1.0.10 depends on package: py37-setuptools>0 - found ===> py37-xenaPython-1.0.10 depends on file: /usr/local/bin/python3.7 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> py37-xenaPython-1.0.10 depends on package: py37-setuptools>0 - found ===> py37-xenaPython-1.0.10 depends on file: /usr/local/bin/python3.7 - found ===> Configuring for py37-xenaPython-1.0.10 ['xenaPython'] running config SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for py37-xenaPython-1.0.10 ['xenaPython'] running build running build_py creating build creating build/lib creating build/lib/xenaPython copying xenaPython/xenaAPI.py -> build/lib/xenaPython copying xenaPython/example.py -> build/lib/xenaPython copying xenaPython/xenaQuery.py -> build/lib/xenaPython copying xenaPython/__init__.py -> build/lib/xenaPython running egg_info writing xenaPython.egg-info/PKG-INFO writing dependency_links to xenaPython.egg-info/dependency_links.txt writing top-level names to xenaPython.egg-info/top_level.txt reading manifest file 'xenaPython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'xenaPython.egg-info/SOURCES.txt' creating build/lib/xenaPython/queries copying xenaPython/queries/allCohorts.xq -> build/lib/xenaPython/queries copying xenaPython/queries/allDatasets.xq -> build/lib/xenaPython/queries copying xenaPython/queries/allDatasetsN.xq -> build/lib/xenaPython/queries copying xenaPython/queries/allFieldMetadata.xq -> build/lib/xenaPython/queries copying xenaPython/queries/cohortSamples.xq -> build/lib/xenaPython/queries copying xenaPython/queries/cohortSummary.xq -> build/lib/xenaPython/queries copying xenaPython/queries/datasetFetch.xq -> build/lib/xenaPython/queries copying xenaPython/queries/datasetField.xq -> build/lib/xenaPython/queries copying xenaPython/queries/datasetFieldExamples.xq -> build/lib/xenaPython/queries copying xenaPython/queries/datasetFieldN.xq -> build/lib/xenaPython/queries copying xenaPython/queries/datasetGeneProbeAvg.xq -> build/lib/xenaPython/queries copying xenaPython/queries/datasetGeneProbesValues.xq -> build/lib/xenaPython/queries copying xenaPython/queries/datasetList.xq -> build/lib/xenaPython/queries copying xenaPython/queries/datasetMetadata.xq -> build/lib/xenaPython/queries copying xenaPython/queries/datasetProbeSignature.xq -> build/lib/xenaPython/queries copying xenaPython/queries/datasetProbeValues.xq -> build/lib/xenaPython/queries copying xenaPython/queries/datasetSamples.xq -> build/lib/xenaPython/queries copying xenaPython/queries/datasetSamplesNDenseMatrix.xq -> build/lib/xenaPython/queries copying xenaPython/queries/datasetsNullRows.xq -> build/lib/xenaPython/queries copying xenaPython/queries/featureList.xq -> build/lib/xenaPython/queries copying xenaPython/queries/fieldCodes.xq -> build/lib/xenaPython/queries copying xenaPython/queries/fieldMetadata.xq -> build/lib/xenaPython/queries copying xenaPython/queries/geneTranscripts.xq -> build/lib/xenaPython/queries copying xenaPython/queries/matchFields.xq -> build/lib/xenaPython/queries copying xenaPython/queries/probeCount.xq -> build/lib/xenaPython/queries copying xenaPython/queries/probemapList.xq -> build/lib/xenaPython/queries copying xenaPython/queries/refGeneExons.xq -> build/lib/xenaPython/queries copying xenaPython/queries/refGenePosition.xq -> build/lib/xenaPython/queries copying xenaPython/queries/refGeneRange.xq -> build/lib/xenaPython/queries copying xenaPython/queries/segmentDataExamples.xq -> build/lib/xenaPython/queries copying xenaPython/queries/segmentedDataRange.xq -> build/lib/xenaPython/queries copying xenaPython/queries/sparseData.xq -> build/lib/xenaPython/queries copying xenaPython/queries/sparseDataExamples.xq -> build/lib/xenaPython/queries copying xenaPython/queries/sparseDataMatchField.xq -> build/lib/xenaPython/queries copying xenaPython/queries/sparseDataMatchFieldSlow.xq -> build/lib/xenaPython/queries copying xenaPython/queries/sparseDataMatchPartialField.xq -> build/lib/xenaPython/queries copying xenaPython/queries/sparseDataRange.xq -> build/lib/xenaPython/queries copying xenaPython/queries/transcriptExpression.xq -> build/lib/xenaPython/queries SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> py37-xenaPython-1.0.10 depends on package: py37-setuptools>0 - found ===> py37-xenaPython-1.0.10 depends on file: /usr/local/bin/python3.7 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for py37-xenaPython-1.0.10 ===> py37-xenaPython-1.0.10 depends on package: py37-setuptools>0 - found ===> py37-xenaPython-1.0.10 depends on file: /usr/local/bin/python3.7 - found ===> Generating temporary packing list ['xenaPython'] running install running build running build_py running egg_info writing xenaPython.egg-info/PKG-INFO writing dependency_links to xenaPython.egg-info/dependency_links.txt writing top-level names to xenaPython.egg-info/top_level.txt reading manifest file 'xenaPython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'xenaPython.egg-info/SOURCES.txt' running install_lib creating /construction/biology/py-xenaPython/stage/usr/local/lib/python3.7 creating /construction/biology/py-xenaPython/stage/usr/local/lib/python3.7/site-packages creating /construction/biology/py-xenaPython/stage/usr/local/lib/python3.7/site-packages/xenaPython copying build/lib/xenaPython/xenaAPI.py -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.7/site-packages/xenaPython creating /construction/biology/py-xenaPython/stage/usr/local/lib/python3.7/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/datasetProbeSignature.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.7/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/datasetSamplesNDenseMatrix.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.7/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/datasetFieldExamples.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.7/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/refGeneExons.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.7/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/datasetProbeValues.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.7/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/allDatasetsN.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.7/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/sparseDataRange.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.7/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/sparseDataMatchFieldSlow.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.7/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/matchFields.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.7/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/datasetList.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.7/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/cohortSummary.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.7/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/cohortSamples.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.7/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/sparseDataMatchPartialField.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.7/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/refGeneRange.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.7/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/datasetFetch.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.7/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/sparseData.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.7/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/transcriptExpression.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.7/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/datasetMetadata.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.7/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/sparseDataExamples.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.7/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/segmentedDataRange.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.7/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/fieldCodes.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.7/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/featureList.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.7/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/sparseDataMatchField.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.7/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/probeCount.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.7/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/allDatasets.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.7/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/datasetsNullRows.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.7/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/datasetGeneProbesValues.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.7/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/segmentDataExamples.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.7/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/datasetSamples.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.7/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/datasetGeneProbeAvg.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.7/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/refGenePosition.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.7/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/probemapList.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.7/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/allCohorts.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.7/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/geneTranscripts.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.7/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/fieldMetadata.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.7/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/allFieldMetadata.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.7/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/datasetField.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.7/site-packages/xenaPython/queries copying build/lib/xenaPython/queries/datasetFieldN.xq -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.7/site-packages/xenaPython/queries copying build/lib/xenaPython/example.py -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.7/site-packages/xenaPython copying build/lib/xenaPython/xenaQuery.py -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.7/site-packages/xenaPython copying build/lib/xenaPython/__init__.py -> /construction/biology/py-xenaPython/stage/usr/local/lib/python3.7/site-packages/xenaPython byte-compiling /construction/biology/py-xenaPython/stage/usr/local/lib/python3.7/site-packages/xenaPython/xenaAPI.py to xenaAPI.cpython-37.pyc byte-compiling /construction/biology/py-xenaPython/stage/usr/local/lib/python3.7/site-packages/xenaPython/example.py to example.cpython-37.pyc byte-compiling /construction/biology/py-xenaPython/stage/usr/local/lib/python3.7/site-packages/xenaPython/xenaQuery.py to xenaQuery.cpython-37.pyc byte-compiling /construction/biology/py-xenaPython/stage/usr/local/lib/python3.7/site-packages/xenaPython/__init__.py to __init__.cpython-37.pyc writing byte-compilation script '/tmp/tmpefdqh1nh.py' /usr/local/bin/python3.7 /tmp/tmpefdqh1nh.py removing /tmp/tmpefdqh1nh.py running install_egg_info Copying xenaPython.egg-info to /construction/biology/py-xenaPython/stage/usr/local/lib/python3.7/site-packages/xenaPython-1.0.10-py3.7.egg-info running install_scripts writing list of installed files to '/construction/biology/py-xenaPython/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:02 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for py37-xenaPython-1.0.10 file sizes/checksums [54]: 0% file sizes/checksums [54]: 100% packing files [54]: 0% packing files [54]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:00 TOTAL TIME 00:00:11