-------------------------------------------------------------------------------
-- Phase: setup
-------------------------------------------------------------------------------

Installing /packages/All/libnghttp2-1.41.0.txz
Installing /packages/All/ca_root_nss-3.55.txz
=====
Message from ca_root_nss-3.55:

--
FreeBSD does not, and can not warrant that the certification authorities
whose certificates are included in this package have in any way been
audited for trustworthiness or RFC 3647 compliance.

Assessment and verification of trust is the complete responsibility of the
system administrator.


This package installs symlinks to support root certificates discovery by
default for software that uses OpenSSL.

This enables SSL Certificate Verification by client software without manual
intervention.

If you prefer to do this manually, replace the following symlinks with
either an empty file or your site-local certificate bundle.

  * /etc/ssl/cert.pem
  * /usr/local/etc/ssl/cert.pem
  * /usr/local/openssl/cert.pem
Installing /packages/All/openssl-1.1.1g,1.txz
Installing /packages/All/curl-7.71.1.txz
Installing /packages/All/io_lib-1.14.10.txz
Installing /packages/All/perl5-5.30.3.txz
=====
Message from perl5-5.30.3:

--
The /usr/bin/perl symlink has been removed starting with Perl 5.20.
For shebangs, you should either use:

#!/usr/local/bin/perl

or

#!/usr/bin/env perl

The first one will only work if you have a /usr/local/bin/perl,
the second will work as long as perl is in PATH.

SUCCEEDED 00:00:07

-------------------------------------------------------------------------------
-- Phase: check-sanity
-------------------------------------------------------------------------------


SUCCEEDED 00:00:00

-------------------------------------------------------------------------------
-- Phase: pkg-depends
-------------------------------------------------------------------------------

===>   p5-Bio-SCF-1.03_2 depends on file: /usr/local/sbin/pkg - found

SUCCEEDED 00:00:00

-------------------------------------------------------------------------------
-- Phase: fetch-depends
-------------------------------------------------------------------------------


SUCCEEDED 00:00:00

-------------------------------------------------------------------------------
-- Phase: fetch
-------------------------------------------------------------------------------

===>   p5-Bio-SCF-1.03_2 depends on file: /usr/local/sbin/pkg - found
===> Fetching all distfiles required by p5-Bio-SCF-1.03_2 for building

SUCCEEDED 00:00:00

-------------------------------------------------------------------------------
-- Phase: checksum
-------------------------------------------------------------------------------

===>   p5-Bio-SCF-1.03_2 depends on file: /usr/local/sbin/pkg - found
===> Fetching all distfiles required by p5-Bio-SCF-1.03_2 for building
=> SHA256 Checksum OK for Bio-SCF-1.03.tar.gz.

SUCCEEDED 00:00:00

-------------------------------------------------------------------------------
-- Phase: extract-depends
-------------------------------------------------------------------------------


SUCCEEDED 00:00:00

-------------------------------------------------------------------------------
-- Phase: extract
-------------------------------------------------------------------------------

===>   p5-Bio-SCF-1.03_2 depends on file: /usr/local/sbin/pkg - found
===> Fetching all distfiles required by p5-Bio-SCF-1.03_2 for building
===>  Extracting for p5-Bio-SCF-1.03_2
=> SHA256 Checksum OK for Bio-SCF-1.03.tar.gz.

Extracted Memory Use:   0.24M
SUCCEEDED 00:00:01

-------------------------------------------------------------------------------
-- Phase: patch-depends
-------------------------------------------------------------------------------


SUCCEEDED 00:00:00

-------------------------------------------------------------------------------
-- Phase: patch
-------------------------------------------------------------------------------

===>  Patching for p5-Bio-SCF-1.03_2

SUCCEEDED 00:00:00

-------------------------------------------------------------------------------
-- Phase: build-depends
-------------------------------------------------------------------------------

===>   p5-Bio-SCF-1.03_2 depends on file: /usr/local/include/io_lib/scf.h - found
===>   p5-Bio-SCF-1.03_2 depends on package: perl5>=5.30.r1<5.31 - found
===>   p5-Bio-SCF-1.03_2 depends on package: perl5>=5.30.r1<5.31 - found

SUCCEEDED 00:00:00

-------------------------------------------------------------------------------
-- Phase: lib-depends
-------------------------------------------------------------------------------


SUCCEEDED 00:00:00

-------------------------------------------------------------------------------
-- Phase: configure
-------------------------------------------------------------------------------

===>   p5-Bio-SCF-1.03_2 depends on file: /usr/local/include/io_lib/scf.h - found
===>   p5-Bio-SCF-1.03_2 depends on package: perl5>=5.30.r1<5.31 - found
===>   p5-Bio-SCF-1.03_2 depends on package: perl5>=5.30.r1<5.31 - found
===>  Configuring for p5-Bio-SCF-1.03_2
Checking if your kit is complete...
Looks good
Generating a Unix-style Makefile
Writing Makefile for Bio::SCF
Writing MYMETA.yml and MYMETA.json

SUCCEEDED 00:00:00

-------------------------------------------------------------------------------
-- Phase: build
-------------------------------------------------------------------------------

===>  Building for p5-Bio-SCF-1.03_2
--- blib/lib/Bio/.exists ---
--- blib/arch/.exists ---
--- blib/lib/auto/Bio/SCF/.exists ---
--- blib/arch/auto/Bio/SCF/.exists ---
--- blib/bin/.exists ---
--- blib/script/.exists ---
--- blib/man1/.exists ---
--- blib/man3/.exists ---
--- config ---
--- subdirs ---
--- dynamic ---
--- SCF.c ---
"/usr/local/bin/perl" "/usr/local/lib/perl5/5.30/ExtUtils/xsubpp"  -typemap '/usr/local/lib/perl5/5.30/ExtUtils/typemap'  SCF.xs > SCF.xsc
--- SCF.bs ---
Running Mkbootstrap for SCF ()
chmod 644 "SCF.bs"
--- pm_to_blib ---
--- blibdirs ---
--- blib/arch/auto/Bio/SCF/SCF.bs ---
--- config ---
--- blib/arch/auto/Bio/SCF/SCF.bs ---
"/usr/local/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- SCF.bs blib/arch/auto/Bio/SCF/SCF.bs 644
--- pm_to_blib ---
cp SCF.pm blib/lib/Bio/SCF.pm
cp SCF/Arrays.pm blib/lib/Bio/SCF/Arrays.pm
--- SCF.c ---
Please specify prototyping behavior for SCF.xs (see perlxs manual)
mv SCF.xsc SCF.c
--- SCF.o ---
cc -c    -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing    -DVERSION=\"1.03\"  -DXS_VERSION=\"1.03\" -DPIC -fPIC "-I/usr/local/lib/perl5/5.30/mach/CORE"  -DLITTLE_ENDIAN SCF.c
In file included from /usr/local/lib/perl5/5.30/mach/CORE/perl.h:5359,
                 from SCF.xs:5:
SCF.xs: In function 'XS_Bio__SCF_get_scf_pointer':
SCF.xs:57:20: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
  ret_val = newSViv((int)scf_data);
                    ^
/usr/local/lib/perl5/5.30/mach/CORE/embed.h:539:40: note: in definition of macro 'newSViv'
 #define newSViv(a)  Perl_newSViv(aTHX_ a)
                                        ^
SCF.xs: In function 'XS_Bio__SCF_get_scf_fpointer':
SCF.xs:80:20: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
  ret_val = newSViv((int)scf_data);
                    ^
/usr/local/lib/perl5/5.30/mach/CORE/embed.h:539:40: note: in definition of macro 'newSViv'
 #define newSViv(a)  Perl_newSViv(aTHX_ a)
                                        ^
SCF.xs: In function 'XS_Bio__SCF_scf_free':
SCF.xs:89:17: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
  scf_deallocate((Scf *)scf_pointer);
                 ^
SCF.xs: In function 'XS_Bio__SCF_get_comments':
SCF.xs:95:18: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
  Scf *scf_data = (Scf *)scf_pointer;
                  ^
SCF.xs: In function 'XS_Bio__SCF_set_comments':
SCF.xs:108:18: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
  Scf *scf_data = (Scf *)scf_pointer;
                  ^
SCF.xs: In function 'XS_Bio__SCF_scf_write':
SCF.xs:121:18: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
  Scf *scf_data = (Scf *)scf_pointer;
                  ^
SCF.xs: In function 'XS_Bio__SCF_scf_fwrite':
SCF.xs:137:18: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
  Scf *scf_data = (Scf *)scf_pointer;
                  ^
SCF.xs: In function 'XS_Bio__SCF_get_from_header':
SCF.xs:159:18: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
  Scf *scf_data = (Scf *)scf_pointer;
                  ^
SCF.xs: In function 'XS_Bio__SCF_get_at':
SCF.xs:186:18: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
  Scf *scf_data = (Scf *)scf_pointer;
                  ^
SCF.xs: In function 'XS_Bio__SCF_set_base_at':
SCF.xs:242:18: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
  Scf *scf_data = (Scf *)scf_pointer;
                  ^
SCF.xs: In function 'XS_Bio__SCF_set_at':
SCF.xs:255:18: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
  Scf *scf_data = (Scf *)scf_pointer;
                  ^
--- blib/arch/auto/Bio/SCF/SCF.so ---
rm -f blib/arch/auto/Bio/SCF/SCF.so
LD_RUN_PATH="/usr/local/lib:/usr/lib" cc  -shared  -L/usr/local/lib/perl5/5.30/mach/CORE -lperl -L/usr/local/lib -fstack-protector-strong  SCF.o  -o blib/arch/auto/Bio/SCF/SCF.so    -lstaden-read -lz    
chmod 755 blib/arch/auto/Bio/SCF/SCF.so
--- dynamic ---
--- linkext ---
--- pure_all ---
--- manifypods ---
Manifying 1 pod document
--- all ---

SUCCEEDED 00:00:01

-------------------------------------------------------------------------------
-- Phase: run-depends
-------------------------------------------------------------------------------

===>   p5-Bio-SCF-1.03_2 depends on file: /usr/local/include/io_lib/scf.h - found
===>   p5-Bio-SCF-1.03_2 depends on package: perl5>=5.30.r1<5.31 - found

SUCCEEDED 00:00:00

-------------------------------------------------------------------------------
-- Phase: stage
-------------------------------------------------------------------------------

===>  Staging for p5-Bio-SCF-1.03_2
===>   p5-Bio-SCF-1.03_2 depends on file: /usr/local/include/io_lib/scf.h - found
===>   p5-Bio-SCF-1.03_2 depends on package: perl5>=5.30.r1<5.31 - found
===>   Generating temporary packing list
"/usr/local/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- SCF.bs blib/arch/auto/Bio/SCF/SCF.bs 644
Manifying 1 pod document
Files found in blib/arch: installing files in blib/lib into architecture dependent library tree
Installing /construction/biology/p5-Bio-SCF/stage/usr/local/lib/perl5/site_perl/mach/5.30/auto/Bio/SCF/SCF.so
Installing /construction/biology/p5-Bio-SCF/stage/usr/local/lib/perl5/site_perl/mach/5.30/Bio/SCF.pm
Installing /construction/biology/p5-Bio-SCF/stage/usr/local/lib/perl5/site_perl/mach/5.30/Bio/SCF/Arrays.pm
Installing /construction/biology/p5-Bio-SCF/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::SCF.3
====> Compressing man pages (compress-man)
====> Running Q/A tests (stage-qa)
Warning: 'lib/perl5/site_perl/mach/5.30/auto/Bio/SCF/SCF.so' is not stripped consider trying INSTALL_TARGET=install-strip or using ${STRIP_CMD}
Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks

SUCCEEDED 00:00:01

-------------------------------------------------------------------------------
-- Phase: package
-------------------------------------------------------------------------------

===>  Building package for p5-Bio-SCF-1.03_2
file sizes/checksums     [5]:   0%
file sizes/checksums     [5]: 100%
packing files            [5]:   0%
packing files            [5]: 100%
packing directories      [0]:   0%
packing directories      [0]: 100%

SUCCEEDED 00:00:00
TOTAL TIME 00:00:10