------------------------------------------------------------------------------- -- Phase: Environment ------------------------------------------------------------------------------- NO_DEPENDS=1 FLAVOR=py37 UNAME_r=5.9 UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=unknown UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 LANG=C HOME=/root USER=root TERM=dumb SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: showconfig ------------------------------------------------------------------------------- ===> The following configuration options are available for py37-pymol-2.4.0: ====> GUI (Graphical User Interface) support: you have to select exactly one of them QT5=on: Qt 5 toolkit support TK=off: Tk GUI toolkit support ===> Use 'make config' to modify these settings SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ENV ------------------------------------------------------------------------------- PYTHON="/usr/local/bin/python3.7" XDG_DATA_HOME=/construction/science/py-pymol XDG_CONFIG_HOME=/construction/science/py-pymol HOME=/construction/science/py-pymol TMPDIR="/tmp" PATH=/construction/science/py-pymol/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ARGS ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ENV ------------------------------------------------------------------------------- XDG_DATA_HOME=/construction/science/py-pymol XDG_CONFIG_HOME=/construction/science/py-pymol HOME=/construction/science/py-pymol TMPDIR="/tmp" PATH=/construction/science/py-pymol/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ARGS ------------------------------------------------------------------------------- DESTDIR=/construction/science/py-pymol/stage SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: PLIST_SUB ------------------------------------------------------------------------------- GTK2_VERSION="2.10.0" GTK3_VERSION="3.0.0" PYTHON_INCLUDEDIR=include/python3.7m PYTHON_LIBDIR=lib/python3.7 PYTHON_PLATFORM=dragonfly5 PYTHON_SITELIBDIR=lib/python3.7/site-packages PYTHON_SUFFIX=37 PYTHON_EXT_SUFFIX= PYTHON_VER=3.7 PYTHON_VERSION=python3.7 PYTHON2="@comment " PYTHON3="" PYQT_APIDIR=share/PyQt5/3.7/qsci PYQT_DOCDIR=share/doc/PyQt5/3.7 PYQT_EXAMPLEDIR=share/examples/PyQt5/3.7 PYQT_SIPDIR=/usr/local/lib/python3.7/site-packages/PyQt5/bindings PYQT_DESIGNERDIR=/designer/PyQt5/3.7 PYQT_QMLDIR=/PyQt5/3.7 PYQT_SIPVERSION=5.5.0 PYQT_QSCIVERSION=2.11.5 PYQT_PYQTVERSION=5.15.2 OSREL=5.9 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/py37-pymol" EXAMPLESDIR="share/examples/py37-pymol" DATADIR="share/py37-pymol" WWWDIR="www/py37-pymol" ETCDIR="etc/py37-pymol" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: SUB_LIST ------------------------------------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/py37-pymol DOCSDIR=/usr/local/share/doc/py37-pymol EXAMPLESDIR=/usr/local/share/examples/py37-pymol WWWDIR=/usr/local/www/py37-pymol ETCDIR=/usr/local/etc/py37-pymol SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: /etc/make.conf ------------------------------------------------------------------------------- DPORTS_BUILDER=yes DISABLE_LICENSES=yes DEFAULT_VERSIONS=ssl=openssl FORCE_PACKAGE=yes DEVELOPER=yes USE_PACKAGE_DEPENDS_ONLY=yes PORTSDIR=/xports PORT_DBDIR=/options PKG_DBDIR=/var/db/pkg PKG_CACHEDIR=/var/cache/pkg PKG_SUFX=.txz DEVELOPER=1 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500906 OSVERSION=9999999 OSREL=5.9 _OSRELEASE=5.9-SYNTH DISTDIR=/distfiles WRKDIRPREFIX=/construction BATCH=yes PACKAGE_BUILDING=yes PKG_CREATE_VERBOSE=yes MAKE_JOBS_NUMBER=10 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/gmp-6.2.1.txz Installing /packages/All/mpfr-4.1.0.txz Installing /packages/All/metis-5.1.0_8.txz ===== Message from metis-5.1.0_8: -- ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Installing /packages/All/tbb-2020.3_1.txz Installing /packages/All/mpc-1.1.0_2.txz UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/gettext-runtime-0.21.txz Installing /packages/All/binutils-2.33.1_4,1.txz Installing /packages/All/gcc8-8.4.0.txz ===== Message from gcc8-8.4.0: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/openblas-0.3.12,1.txz Installing /packages/All/suitesparse-5.8.1.txz Installing /packages/All/libffi-3.3_1.txz Installing /packages/All/expat-2.2.10.txz Installing /packages/All/ncurses-6.2.20210116.txz Installing /packages/All/readline-8.0.4_1.txz Installing /packages/All/openssl-1.1.1i,1.txz Installing /packages/All/python37-3.7.9_1.txz ===== Message from python37-3.7.9_1: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py37-gdbm databases/py-gdbm@py37 py37-sqlite3 databases/py-sqlite3@py37 py37-tkinter x11-toolkits/py-tkinter@py37 Installing /packages/All/py37-setuptools-44.0.0.txz Installing /packages/All/py37-numpy-1.16.6,1.txz Installing /packages/All/glm-0.9.8.5_4,1.txz Installing /packages/All/msgpack-3.3.0.txz Installing /packages/All/mmtf-cpp-1.0.0_2.txz Installing /packages/All/xorgproto-2020.1.txz Installing /packages/All/png-1.6.37.txz Installing /packages/All/freetype2-2.10.4.txz ===== Message from freetype2-2.10.4: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/site/index.html, if documentation was installed). Installing /packages/All/libnghttp2-1.42.0.txz Installing /packages/All/ca_root_nss-3.58.txz ===== Message from ca_root_nss-3.58: -- FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem Installing /packages/All/curl-7.74.0.txz Installing /packages/All/hdf-szip-2.1.1.txz Installing /packages/All/hdf5-1.10.6,1.txz Installing /packages/All/pkgconf-1.7.3,1.txz Installing /packages/All/netcdf-4.7.3.txz Installing /packages/All/libxml2-2.9.10_2.txz Installing /packages/All/wayland-1.18.0.txz Installing /packages/All/liblz4-1.9.3,1.txz Installing /packages/All/zstd-1.4.5_1.txz Installing /packages/All/pciids-20201127.txz Installing /packages/All/libpciaccess-0.16.txz Installing /packages/All/libdrm-2.4.101.txz Installing /packages/All/libunwind-20200331_1.txz Installing /packages/All/libpthread-stubs-0.4.txz Installing /packages/All/libXau-1.0.9.txz Installing /packages/All/libXdmcp-1.1.3.txz Installing /packages/All/libxcb-1.14_1.txz Installing /packages/All/libX11-1.6.12,1.txz Installing /packages/All/libXfixes-5.0.3_2.txz Installing /packages/All/libXdamage-1.1.5.txz Installing /packages/All/libXext-1.3.4,1.txz Installing /packages/All/libxshmfence-1.3.txz Installing /packages/All/libXxf86vm-1.1.4_3.txz Installing /packages/All/libXrender-0.9.10_2.txz Installing /packages/All/libXrandr-1.5.2.txz Installing /packages/All/mesa-libs-20.2.3.txz Installing /packages/All/libGLU-9.0.1.txz Installing /packages/All/libXi-1.7.10,1.txz Installing /packages/All/libICE-1.0.10,1.txz Installing /packages/All/libSM-1.2.3,1.txz Installing /packages/All/libXt-1.2.0,1.txz Installing /packages/All/libXmu-1.1.3,1.txz Installing /packages/All/glew-2.2.0.txz Installing /packages/All/freeglut-3.0.0_2.txz ===== Message from freeglut-3.0.0_2: -- Joystick support is untested and it is unknown if it works. Do not hesitate to contact x11@FreeBSD.org if this causes issues. Installing /packages/All/py37-msgpack-1.0.2.txz Installing /packages/All/jpeg-turbo-2.0.6.txz Installing /packages/All/fontconfig-2.13.92_2,1.txz Running fc-cache to build fontconfig cache... Font directories: /usr/local/share/fonts /usr/local/lib/X11/fonts /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory fc-cache: succeeded Installing /packages/All/tcl86-8.6.11_1.txz Installing /packages/All/libXft-2.3.3.txz Installing /packages/All/libXScrnSaver-1.2.3_2.txz Installing /packages/All/tk86-8.6.11_2.txz Installing /packages/All/blt-2.5.3_5.txz Installing /packages/All/py37-tkinter-3.7.9_6.txz Installing /packages/All/py37-Pmw-2.0.1_1.txz Installing /packages/All/double-conversion-3.1.5.19.txz Installing /packages/All/icu-68.2,1.txz Installing /packages/All/pcre2-10.36.txz Installing /packages/All/pcre-8.44.txz Installing /packages/All/libiconv-1.16.txz Installing /packages/All/glib-2.66.4_1,1.txz No schema files found: doing nothing. Installing /packages/All/qtchooser-66_4.txz ===== Message from qtchooser-66_4: -- qtchooser is a wrapper that allows to specify Qt version of binaries for qmake, moc and other tools will be run when invoking the binaries in $PATH. By default, the Qt5 versions are run. It is possible to change the behavior by setting the QT_SELECT environment variable to "qtX", where X is desired Qt version, provided that it is offered by the Ports Collection. See qtchooser(1) for more information. Installing /packages/All/qt5-core-5.15.2.txz Installing /packages/All/dbus-1.12.20_3.txz ===> Creating groups. Creating group 'messagebus' with gid '556'. ===> Creating users Creating user 'messagebus' with uid '556'. Installing /packages/All/libevdev-1.5.9.txz Installing /packages/All/graphite2-1.3.14.txz Installing /packages/All/harfbuzz-2.7.4.txz Installing /packages/All/libudev-devd-0.4.2_1.txz Installing /packages/All/evdev-proto-5.8.txz Installing /packages/All/libmtdev-1.1.6.txz Installing /packages/All/py37-evdev-1.3.0.txz Installing /packages/All/py37-six-1.15.0.txz Installing /packages/All/py37-pyudev-0.22.0.txz Installing /packages/All/libinput-1.12.6_1.txz Installing /packages/All/xcb-util-0.4.0_2,1.txz Installing /packages/All/xcb-util-wm-0.4.1_3.txz Installing /packages/All/xcb-util-image-0.4.0_1.txz Installing /packages/All/xcb-util-keysyms-0.4.0_1.txz Installing /packages/All/xcb-util-renderutil-0.3.9_1.txz Installing /packages/All/xkeyboard-config-2.31.txz Installing /packages/All/libxkbcommon-1.0.3.txz ===== Message from libxkbcommon-1.0.3: -- If arrow keys don't work under X11 switch to legacy rules e.g., For sh/bash/ksh/zsh run and (optionally) add into ~/.profile: export XKB_DEFAULT_RULES=xorg For csh/tcsh run and (optionally) add into ~/.login: setenv XKB_DEFAULT_RULES xorg Installing /packages/All/qt5-dbus-5.15.2_1.txz Installing /packages/All/qt5-network-5.15.2_1.txz Installing /packages/All/vulkan-headers-1.2.166.txz Installing /packages/All/hicolor-icon-theme-0.17.txz Installing /packages/All/xprop-1.2.5.txz Installing /packages/All/xset-1.2.4_3.txz Installing /packages/All/xdg-utils-1.1.3_1.txz Installing /packages/All/encodings-1.0.5,1.txz Installing /packages/All/libfontenc-1.1.4.txz Installing /packages/All/mkfontscale-1.2.1.txz Installing /packages/All/font-bh-ttf-1.0.3_4.txz Installing /packages/All/font-misc-meltho-1.0.3_4.txz Installing /packages/All/font-misc-ethiopic-1.0.4.txz Installing /packages/All/dejavu-2.37_1.txz ===== Message from dejavu-2.37_1: -- Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. Installing /packages/All/xorg-fonts-truetype-7.7_1.txz Installing /packages/All/qt5-gui-5.15.2_2.txz Installing /packages/All/libdaemon-0.14_1.txz Installing /packages/All/dbus-glib-0.110.txz Installing /packages/All/gdbm-1.19.txz Installing /packages/All/libevent-2.1.12.txz Installing /packages/All/gnome_subr-1.0.txz Installing /packages/All/avahi-app-0.8.txz ===> Creating groups. Creating group 'avahi' with gid '558'. ===> Creating users Creating user 'avahi' with uid '558'. Installing /packages/All/nettle-3.6.txz Installing /packages/All/libtasn1-4.16.0_1.txz Installing /packages/All/libunistring-0.9.10_1.txz Installing /packages/All/libidn2-2.3.0_1.txz Installing /packages/All/bash-5.1.4_1.txz Installing /packages/All/bash-completion-2.11,2.txz ===== Message from bash-completion-2.11,2: -- To enable the bash completion library, add the following to your .bashrc file: [[ $PS1 && -f /usr/local/share/bash-completion/bash_completion.sh ]] && \ source /usr/local/share/bash-completion/bash_completion.sh See /usr/local/share/doc/bash-completion/README.md for more information. Installing /packages/All/p11-kit-0.23.22.txz Installing /packages/All/tpm-emulator-0.7.4_2.txz ===> Creating groups. Creating group '_tss' with gid '601'. ===> Creating users Creating user '_tss' with uid '601'. Installing /packages/All/trousers-0.3.14_3.txz ===> Creating groups. Using existing group '_tss'. ===> Creating users Using existing user '_tss'. ===== Message from trousers-0.3.14_3: -- To run tcsd automatically, add the following line to /etc/rc.conf: tcsd_enable="YES" You might want to edit /usr/local/etc/tcsd.conf to reflect your setup. If you want to use tcsd with software TPM emulator, use the following configuration in /etc/rc.conf: tcsd_enable="YES" tcsd_mode="emulator" tpmd_enable="YES" To use TPM, add your_account to '_tss' group like following: # pw groupmod _tss -m your_account Installing /packages/All/gnutls-3.6.15.txz Installing /packages/All/libpaper-1.1.24.4.txz Installing /packages/All/cups-2.3.3_1.txz ===> Creating groups. Creating group 'cups' with gid '193'. ===> Creating users Creating user 'cups' with uid '193'. Installing /packages/All/qt5-widgets-5.15.2_1.txz Installing /packages/All/qt5-printsupport-5.15.2_1.txz Installing /packages/All/qscintilla2-qt5-2.11.5_1.txz Installing /packages/All/py37-qt5-sip-12.8.1.txz Installing /packages/All/py37-toml-0.10.2.txz Installing /packages/All/py37-pyparsing-2.4.7.txz Installing /packages/All/py37-packaging-20.8.txz Installing /packages/All/py37-sip-5.5.0,1.txz Installing /packages/All/py37-qt5-core-5.15.2.txz Installing /packages/All/jasper-2.0.24.txz Installing /packages/All/jbigkit-2.1_1.txz Installing /packages/All/tiff-4.2.0.txz Installing /packages/All/lcms-1.19_6,1.txz Installing /packages/All/libmng-1.0.10_3.txz Installing /packages/All/giflib-5.2.1.txz Installing /packages/All/webp-1.1.0.txz Installing /packages/All/qt5-imageformats-5.15.2.txz Installing /packages/All/py37-qt5-gui-5.15.2.txz Installing /packages/All/qt5-opengl-5.15.2_1.txz Installing /packages/All/py37-qt5-widgets-5.15.2.txz Installing /packages/All/py37-qt5-opengl-5.15.2.txz UNFLAVORED devel/binutils -> use devel/binutils@native SUCCEEDED 00:01:50 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> py37-pymol-2.4.0 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> py37-pymol-2.4.0 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py37-pymol-2.4.0 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> py37-pymol-2.4.0 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py37-pymol-2.4.0 for building => SHA256 Checksum OK for schrodinger-pymol-open-source-v2.4.0_GH0.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> py37-pymol-2.4.0 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py37-pymol-2.4.0 for building ===> Extracting for py37-pymol-2.4.0 => SHA256 Checksum OK for schrodinger-pymol-open-source-v2.4.0_GH0.tar.gz. Extracted Memory Use: 41.31M SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for py37-pymol-2.4.0 ===> Applying ports patches for py37-pymol-2.4.0 from /xports/science/py-pymol/files ===> Applying dragonfly patches for py37-pymol-2.4.0 from /xports/science/py-pymol/dragonfly SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> py37-pymol-2.4.0 depends on package: py37-numpy>=1.16,1<1.20,1 - found ===> py37-pymol-2.4.0 depends on file: /usr/local/include/glm/glm.hpp - found ===> py37-pymol-2.4.0 depends on file: /usr/local/include/mmtf.hpp - found ===> py37-pymol-2.4.0 depends on package: py37-setuptools>0 - found ===> py37-pymol-2.4.0 depends on file: /usr/local/bin/python3.7 - found ===> py37-pymol-2.4.0 depends on package: xorgproto>=0 - found ===> py37-pymol-2.4.0 depends on package: xorgproto>=0 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- ===> py37-pymol-2.4.0 depends on shared library: libfreetype.so - found (/usr/local/lib/libfreetype.so) ===> py37-pymol-2.4.0 depends on shared library: libpng.so - found (/usr/local/lib/libpng.so) ===> py37-pymol-2.4.0 depends on shared library: libmsgpackc.so - found (/usr/local/lib/libmsgpackc.so) ===> py37-pymol-2.4.0 depends on shared library: libnetcdf.so - found (/usr/local/lib/libnetcdf.so) ===> py37-pymol-2.4.0 depends on shared library: libGL.so - found (/usr/local/lib/libGL.so) ===> py37-pymol-2.4.0 depends on shared library: libGLEW.so - found (/usr/local/lib/libGLEW.so) ===> py37-pymol-2.4.0 depends on shared library: libGLU.so - found (/usr/local/lib/libGLU.so) ===> py37-pymol-2.4.0 depends on shared library: libglut.so - found (/usr/local/lib/libglut.so) ===> py37-pymol-2.4.0 depends on shared library: libxml2.so - found (/usr/local/lib/libxml2.so) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> py37-pymol-2.4.0 depends on package: py37-numpy>=1.16,1<1.20,1 - found ===> py37-pymol-2.4.0 depends on file: /usr/local/include/glm/glm.hpp - found ===> py37-pymol-2.4.0 depends on file: /usr/local/include/mmtf.hpp - found ===> py37-pymol-2.4.0 depends on package: py37-setuptools>0 - found ===> py37-pymol-2.4.0 depends on file: /usr/local/bin/python3.7 - found ===> py37-pymol-2.4.0 depends on package: xorgproto>=0 - found ===> py37-pymol-2.4.0 depends on package: xorgproto>=0 - found ===> py37-pymol-2.4.0 depends on shared library: libfreetype.so - found (/usr/local/lib/libfreetype.so) ===> py37-pymol-2.4.0 depends on shared library: libpng.so - found (/usr/local/lib/libpng.so) ===> py37-pymol-2.4.0 depends on shared library: libmsgpackc.so - found (/usr/local/lib/libmsgpackc.so) ===> py37-pymol-2.4.0 depends on shared library: libnetcdf.so - found (/usr/local/lib/libnetcdf.so) ===> py37-pymol-2.4.0 depends on shared library: libGL.so - found (/usr/local/lib/libGL.so) ===> py37-pymol-2.4.0 depends on shared library: libGLEW.so - found (/usr/local/lib/libGLEW.so) ===> py37-pymol-2.4.0 depends on shared library: libGLU.so - found (/usr/local/lib/libGLU.so) ===> py37-pymol-2.4.0 depends on shared library: libglut.so - found (/usr/local/lib/libglut.so) ===> py37-pymol-2.4.0 depends on shared library: libxml2.so - found (/usr/local/lib/libxml2.so) ===> Configuring for py37-pymol-2.4.0 running config SUCCEEDED 00:00:04 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for py37-pymol-2.4.0 running build running build_py creating build/lib.dragonfly-5.9-x86_64-3.7 creating build/lib.dragonfly-5.9-x86_64-3.7/pymol2 copying modules/pymol2/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol2 copying modules/pymol2/cmd2.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol2 creating build/lib.dragonfly-5.9-x86_64-3.7/chempy copying modules/chempy/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/chempy copying modules/chempy/arc.py -> build/lib.dragonfly-5.9-x86_64-3.7/chempy copying modules/chempy/bond_amber.py -> build/lib.dragonfly-5.9-x86_64-3.7/chempy copying modules/chempy/bond_mmff.py -> build/lib.dragonfly-5.9-x86_64-3.7/chempy copying modules/chempy/bonds.py -> build/lib.dragonfly-5.9-x86_64-3.7/chempy copying modules/chempy/brick.py -> build/lib.dragonfly-5.9-x86_64-3.7/chempy copying modules/chempy/cc1.py -> build/lib.dragonfly-5.9-x86_64-3.7/chempy copying modules/chempy/charge.py -> build/lib.dragonfly-5.9-x86_64-3.7/chempy copying modules/chempy/cif.py -> build/lib.dragonfly-5.9-x86_64-3.7/chempy copying modules/chempy/cpv.py -> build/lib.dragonfly-5.9-x86_64-3.7/chempy copying modules/chempy/dictdb.py -> build/lib.dragonfly-5.9-x86_64-3.7/chempy copying modules/chempy/gamess1.py -> build/lib.dragonfly-5.9-x86_64-3.7/chempy copying modules/chempy/gms.py -> build/lib.dragonfly-5.9-x86_64-3.7/chempy copying modules/chempy/hetatm.py -> build/lib.dragonfly-5.9-x86_64-3.7/chempy copying modules/chempy/io.py -> build/lib.dragonfly-5.9-x86_64-3.7/chempy copying modules/chempy/lst.py -> build/lib.dragonfly-5.9-x86_64-3.7/chempy copying modules/chempy/mae.py -> build/lib.dragonfly-5.9-x86_64-3.7/chempy copying modules/chempy/map.py -> build/lib.dragonfly-5.9-x86_64-3.7/chempy copying modules/chempy/mass.py -> build/lib.dragonfly-5.9-x86_64-3.7/chempy copying modules/chempy/mmd.py -> build/lib.dragonfly-5.9-x86_64-3.7/chempy copying modules/chempy/models.py -> build/lib.dragonfly-5.9-x86_64-3.7/chempy copying modules/chempy/mol.py -> build/lib.dragonfly-5.9-x86_64-3.7/chempy copying modules/chempy/mol2.py -> build/lib.dragonfly-5.9-x86_64-3.7/chempy copying modules/chempy/neighbor.py -> build/lib.dragonfly-5.9-x86_64-3.7/chempy copying modules/chempy/pdb.py -> build/lib.dragonfly-5.9-x86_64-3.7/chempy copying modules/chempy/pkl.py -> build/lib.dragonfly-5.9-x86_64-3.7/chempy copying modules/chempy/place.py -> build/lib.dragonfly-5.9-x86_64-3.7/chempy copying modules/chempy/protein.py -> build/lib.dragonfly-5.9-x86_64-3.7/chempy copying modules/chempy/protein_amber.py -> build/lib.dragonfly-5.9-x86_64-3.7/chempy copying modules/chempy/protein_amber99.py -> build/lib.dragonfly-5.9-x86_64-3.7/chempy copying modules/chempy/protein_mmff.py -> build/lib.dragonfly-5.9-x86_64-3.7/chempy copying modules/chempy/protein_residues.py -> build/lib.dragonfly-5.9-x86_64-3.7/chempy copying modules/chempy/sdf.py -> build/lib.dragonfly-5.9-x86_64-3.7/chempy copying modules/chempy/solvate.py -> build/lib.dragonfly-5.9-x86_64-3.7/chempy copying modules/chempy/water_amber.py -> build/lib.dragonfly-5.9-x86_64-3.7/chempy copying modules/chempy/water_residues.py -> build/lib.dragonfly-5.9-x86_64-3.7/chempy copying modules/chempy/xyz.py -> build/lib.dragonfly-5.9-x86_64-3.7/chempy creating build/lib.dragonfly-5.9-x86_64-3.7/chempy/bmin copying modules/chempy/bmin/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/chempy/bmin copying modules/chempy/bmin/commands.py -> build/lib.dragonfly-5.9-x86_64-3.7/chempy/bmin copying modules/chempy/bmin/realtime.py -> build/lib.dragonfly-5.9-x86_64-3.7/chempy/bmin copying modules/chempy/bmin/state.py -> build/lib.dragonfly-5.9-x86_64-3.7/chempy/bmin copying modules/chempy/bmin/util.py -> build/lib.dragonfly-5.9-x86_64-3.7/chempy/bmin creating build/lib.dragonfly-5.9-x86_64-3.7/chempy/champ copying modules/chempy/champ/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/chempy/champ copying modules/chempy/champ/amber99.py -> build/lib.dragonfly-5.9-x86_64-3.7/chempy/champ copying modules/chempy/champ/assign.py -> build/lib.dragonfly-5.9-x86_64-3.7/chempy/champ copying modules/chempy/champ/formal_charges.py -> build/lib.dragonfly-5.9-x86_64-3.7/chempy/champ creating build/lib.dragonfly-5.9-x86_64-3.7/chempy/fast copying modules/chempy/fast/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/chempy/fast creating build/lib.dragonfly-5.9-x86_64-3.7/chempy/fragments copying modules/chempy/fragments/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/chempy/fragments creating build/lib.dragonfly-5.9-x86_64-3.7/chempy/mmtf copying modules/chempy/mmtf/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/chempy/mmtf copying modules/chempy/mmtf/io.py -> build/lib.dragonfly-5.9-x86_64-3.7/chempy/mmtf creating build/lib.dragonfly-5.9-x86_64-3.7/chempy/tinker copying modules/chempy/tinker/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/chempy/tinker copying modules/chempy/tinker/amber.py -> build/lib.dragonfly-5.9-x86_64-3.7/chempy/tinker copying modules/chempy/tinker/keyword.py -> build/lib.dragonfly-5.9-x86_64-3.7/chempy/tinker copying modules/chempy/tinker/realtime.py -> build/lib.dragonfly-5.9-x86_64-3.7/chempy/tinker copying modules/chempy/tinker/state.py -> build/lib.dragonfly-5.9-x86_64-3.7/chempy/tinker creating build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt copying modules/pmg_qt/TextEditor.py -> build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt copying modules/pmg_qt/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt copying modules/pmg_qt/advanced_settings_gui.py -> build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt copying modules/pmg_qt/builder.py -> build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt copying modules/pmg_qt/file_dialogs.py -> build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt copying modules/pmg_qt/keymapping.py -> build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt copying modules/pmg_qt/mimic_pmg_tk.py -> build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt copying modules/pmg_qt/mimic_tk.py -> build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt copying modules/pmg_qt/properties_dialog.py -> build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt copying modules/pmg_qt/pymol_gl_widget.py -> build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt copying modules/pmg_qt/pymol_qt_gui.py -> build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt copying modules/pmg_qt/volume.py -> build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt creating build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt/forms copying modules/pmg_qt/forms/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt/forms creating build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt/syntax copying modules/pmg_qt/syntax/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt/syntax copying modules/pmg_qt/syntax/pml.py -> build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt/syntax copying modules/pmg_qt/syntax/pmlparser.py -> build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt/syntax copying modules/pmg_qt/syntax/python.py -> build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt/syntax creating build/lib.dragonfly-5.9-x86_64-3.7/pmg_tk copying modules/pmg_tk/ColorEditor.py -> build/lib.dragonfly-5.9-x86_64-3.7/pmg_tk copying modules/pmg_tk/Demo.py -> build/lib.dragonfly-5.9-x86_64-3.7/pmg_tk copying modules/pmg_tk/PMGApp.py -> build/lib.dragonfly-5.9-x86_64-3.7/pmg_tk copying modules/pmg_tk/PyMOLMapLoad.py -> build/lib.dragonfly-5.9-x86_64-3.7/pmg_tk copying modules/pmg_tk/SetEditor.py -> build/lib.dragonfly-5.9-x86_64-3.7/pmg_tk copying modules/pmg_tk/Setting.py -> build/lib.dragonfly-5.9-x86_64-3.7/pmg_tk copying modules/pmg_tk/TextEditor.py -> build/lib.dragonfly-5.9-x86_64-3.7/pmg_tk copying modules/pmg_tk/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/pmg_tk copying modules/pmg_tk/volume.py -> build/lib.dragonfly-5.9-x86_64-3.7/pmg_tk creating build/lib.dragonfly-5.9-x86_64-3.7/pmg_tk/skins copying modules/pmg_tk/skins/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/pmg_tk/skins creating build/lib.dragonfly-5.9-x86_64-3.7/pmg_tk/skins/demo copying modules/pmg_tk/skins/demo/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/pmg_tk/skins/demo creating build/lib.dragonfly-5.9-x86_64-3.7/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/ModalWindow.py -> build/lib.dragonfly-5.9-x86_64-3.7/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/builder.py -> build/lib.dragonfly-5.9-x86_64-3.7/pmg_tk/skins/normal creating build/lib.dragonfly-5.9-x86_64-3.7/pmg_tk/startup copying modules/pmg_tk/startup/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/pmg_tk/startup copying modules/pmg_tk/startup/apbs_tools.py -> build/lib.dragonfly-5.9-x86_64-3.7/pmg_tk/startup creating build/lib.dragonfly-5.9-x86_64-3.7/pymol copying modules/pymol/internal.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol copying modules/pymol/invocation.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol copying modules/pymol/keyboard.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol copying modules/pymol/keywords.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol copying modules/pymol/lazyio.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol copying modules/pymol/locking.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol copying modules/pymol/menu.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol copying modules/pymol/monitoring.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol copying modules/pymol/morphing.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol copying modules/pymol/movie.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol copying modules/pymol/moving.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol copying modules/pymol/parser.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol copying modules/pymol/parsing.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol copying modules/pymol/povray.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol copying modules/pymol/preset.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol copying modules/pymol/pymolhttpd.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol copying modules/pymol/querying.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol copying modules/pymol/rpc.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol copying modules/pymol/selecting.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol copying modules/pymol/selector.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol copying modules/pymol/seqalign.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol copying modules/pymol/setting.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol copying modules/pymol/shortcut.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol copying modules/pymol/util.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol copying modules/pymol/vfont.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol copying modules/pymol/viewing.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol copying modules/pymol/wizarding.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol copying modules/pymol/xray.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol copying modules/pymol/xwin.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol copying modules/pymol/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol copying modules/pymol/__main__.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol copying modules/pymol/_gui.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol copying modules/pymol/api.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol copying modules/pymol/callback.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol copying modules/pymol/cgo.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol copying modules/pymol/checking.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol copying modules/pymol/cmd.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol copying modules/pymol/colorprinting.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol copying modules/pymol/colorramping.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol copying modules/pymol/commanding.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol copying modules/pymol/completing.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol copying modules/pymol/computing.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol copying modules/pymol/constants.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol copying modules/pymol/constants_palette.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol copying modules/pymol/controlling.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol copying modules/pymol/creating.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol copying modules/pymol/diagnosing.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol copying modules/pymol/editing.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol copying modules/pymol/editor.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol copying modules/pymol/experimenting.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol copying modules/pymol/exporting.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol copying modules/pymol/externing.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol copying modules/pymol/feedingback.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol copying modules/pymol/fitting.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol copying modules/pymol/gui.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol copying modules/pymol/headering.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol copying modules/pymol/helping.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol copying modules/pymol/importing.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol creating build/lib.dragonfly-5.9-x86_64-3.7/pymol/opengl copying modules/pymol/opengl/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol/opengl creating build/lib.dragonfly-5.9-x86_64-3.7/pymol/opengl/gl copying modules/pymol/opengl/gl/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol/opengl/gl creating build/lib.dragonfly-5.9-x86_64-3.7/pymol/opengl/glu copying modules/pymol/opengl/glu/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol/opengl/glu creating build/lib.dragonfly-5.9-x86_64-3.7/pymol/opengl/glut copying modules/pymol/opengl/glut/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol/opengl/glut creating build/lib.dragonfly-5.9-x86_64-3.7/pymol/plugins copying modules/pymol/plugins/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol/plugins copying modules/pymol/plugins/installation.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol/plugins copying modules/pymol/plugins/legacysupport.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol/plugins copying modules/pymol/plugins/managergui.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol/plugins copying modules/pymol/plugins/managergui_qt.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol/plugins copying modules/pymol/plugins/repository.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol/plugins creating build/lib.dragonfly-5.9-x86_64-3.7/pymol/stereochemistry copying modules/pymol/stereochemistry/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol/stereochemistry creating build/lib.dragonfly-5.9-x86_64-3.7/pymol/wizard copying modules/pymol/wizard/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol/wizard copying modules/pymol/wizard/annotation.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol/wizard copying modules/pymol/wizard/appearance.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol/wizard copying modules/pymol/wizard/benchmark.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol/wizard copying modules/pymol/wizard/box.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol/wizard copying modules/pymol/wizard/charge.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol/wizard copying modules/pymol/wizard/cleanup.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol/wizard copying modules/pymol/wizard/command.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol/wizard copying modules/pymol/wizard/demo.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol/wizard copying modules/pymol/wizard/density.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol/wizard copying modules/pymol/wizard/distance.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol/wizard copying modules/pymol/wizard/dragging.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol/wizard copying modules/pymol/wizard/fedora.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol/wizard copying modules/pymol/wizard/filter.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol/wizard copying modules/pymol/wizard/label.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol/wizard copying modules/pymol/wizard/measurement.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol/wizard copying modules/pymol/wizard/message.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol/wizard copying modules/pymol/wizard/mutagenesis.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol/wizard copying modules/pymol/wizard/nucmutagenesis.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol/wizard copying modules/pymol/wizard/openvr.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol/wizard copying modules/pymol/wizard/pair_fit.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol/wizard copying modules/pymol/wizard/pseudoatom.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol/wizard copying modules/pymol/wizard/renaming.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol/wizard copying modules/pymol/wizard/sculpting.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol/wizard copying modules/pymol/wizard/security.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol/wizard copying modules/pymol/wizard/stereodemo.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol/wizard copying modules/pymol/wizard/toggle.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol/wizard creating build/lib.dragonfly-5.9-x86_64-3.7/pymol/Qt copying modules/pymol/Qt/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol/Qt copying modules/pymol/Qt/utils.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol/Qt creating build/lib.dragonfly-5.9-x86_64-3.7/pymol/contrib copying modules/pymol/contrib/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/pymol/contrib copying modules/pmg_qt/forms/askpartial.ui -> build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt/forms copying modules/pmg_qt/forms/colors.ui -> build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt/forms copying modules/pmg_qt/forms/fetch.ui -> build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt/forms copying modules/pmg_qt/forms/load_aln.ui -> build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt/forms copying modules/pmg_qt/forms/load_mae.ui -> build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt/forms copying modules/pmg_qt/forms/load_map.ui -> build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt/forms copying modules/pmg_qt/forms/load_mtz.ui -> build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt/forms copying modules/pmg_qt/forms/load_traj.ui -> build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt/forms copying modules/pmg_qt/forms/movieexport.ui -> build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt/forms copying modules/pmg_qt/forms/pluginitem.ui -> build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt/forms copying modules/pmg_qt/forms/pluginmanager.ui -> build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt/forms copying modules/pmg_qt/forms/png.ui -> build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt/forms copying modules/pmg_qt/forms/props.ui -> build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt/forms copying modules/pmg_qt/forms/render.ui -> build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt/forms copying modules/pmg_qt/forms/save_molecule.ui -> build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt/forms copying modules/pmg_qt/forms/save_object.ui -> build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt/forms running build_ext building 'pymol._cmd' extension creating build/temp.dragonfly-5.9-x86_64-3.7 creating build/temp.dragonfly-5.9-x86_64-3.7/build creating build/temp.dragonfly-5.9-x86_64-3.7/build/generated creating build/temp.dragonfly-5.9-x86_64-3.7/contrib creating build/temp.dragonfly-5.9-x86_64-3.7/contrib/mmtf-c creating build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc creating build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins creating build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin creating build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src creating build/temp.dragonfly-5.9-x86_64-3.7/layer0 creating build/temp.dragonfly-5.9-x86_64-3.7/layer1 creating build/temp.dragonfly-5.9-x86_64-3.7/layer2 creating build/temp.dragonfly-5.9-x86_64-3.7/layer3 creating build/temp.dragonfly-5.9-x86_64-3.7/layer4 creating build/temp.dragonfly-5.9-x86_64-3.7/layer5 creating build/temp.dragonfly-5.9-x86_64-3.7/modules creating build/temp.dragonfly-5.9-x86_64-3.7/modules/cealign creating build/temp.dragonfly-5.9-x86_64-3.7/modules/cealign/src creating build/temp.dragonfly-5.9-x86_64-3.7/ov creating build/temp.dragonfly-5.9-x86_64-3.7/ov/src c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD build/generated/ShaderText.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/build/generated/ShaderText.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/corplugin.c -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/inthash.c -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/inthash.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/carplugin.c -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/mmtf-c/mmtf_parser.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/mmtf-c/mmtf_parser.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function 'angular_momentum_expon': contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:545:14: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] for (i=0; i sizeof(name)) { ^ contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c: In function 'read_mmtk_cdf_timestep': contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c:1060:16: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] for (i=0; i<(3 * mmtk->atom_numberdim); i++) { ^ c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:49: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function 'angular_momentum_expon': contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:545:14: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] for (i=0; ifd) != 3*n) { ^~ cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 In file included from contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c:42: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function 'angular_momentum_expon': contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:545:14: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] for (i=0; inbonds + bnum; ^~~~ cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function 'bool readRMSDBonds(molfile_atom_t*, pdbxParser*)': contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:984:7: warning: unused variable 'bondTable' [-Wunused-variable] int bondTable[32]; ^~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:988:15: warning: unused variable 'j' [-Wunused-variable] int i, pos, j, k; ^ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:991:8: warning: unused variable 'modelNum' [-Wunused-variable] char modelNum[8]; ^~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:1002:20: warning: unused variable 'atom' [-Wunused-variable] molfile_atom_t * atom; ^~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function 'void* open_file_write(const char*, const char*, int)': contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:1409:9: warning: unused variable 'fd' [-Wunused-variable] FILE* fd; ^~ cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 In file included from contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:30: contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void put_element_ply(PlyFile*, void*)': contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:459:7: warning: unused variable 'i' [-Wunused-variable] int i,j,k; ^ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void ascii_get_element(PlyFile*, char*)': contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1407:7: warning: unused variable 'i' [-Wunused-variable] int i,j,k; ^ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void binary_get_element(PlyFile*, char*)': contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1541:7: warning: unused variable 'i' [-Wunused-variable] int i,j,k; ^ c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c: In function 'write_psf_structure': contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:782:33: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] if (strlen(atoms[i].type) > fw) { ^ cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c: In function 'read_dcdheader': contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:191:57: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] } else if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic) { ^~ contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:204:54: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic) { ^~ contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:222:26: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] if (input_integer[0] != dcdcordmagic) { ^~ contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:399:45: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] if ((input_integer[0]+input_integer[1]) != ((*N)-(*NAMNF))*4) { ^~ contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:416:45: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] if ((input_integer[0]+input_integer[1]) != ((*N)-(*NAMNF))*4) { ^~ contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c: In function 'read_dcdstep': contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:621:23: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] if (tmpbuf[i] != sizeof(float)*N) return DCD_BADFORMAT; ^~ cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:625:43: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] if ((tmpbuf[2*i]+tmpbuf[2*i+1]) != sizeof(float)*N) return DCD_BADFORMAT; ^~ cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer0/Crystal.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer0/Crystal.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function 'abinit_readline': contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:279:19: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] for (i = 0; i < strlen(line); ++i) { ^ cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer0/Err.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer0/Err.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer0/Field.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer0/Field.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer0/GenericBuffer.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer0/GenericBuffer.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer0/Isosurf.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer0/Isosurf.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer0/Block.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer0/Block.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer0/Match.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer0/Match.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer0/MemoryDebug.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer0/MemoryDebug.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer0/Parse.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer0/Parse.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer0/PostProcess.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer0/PostProcess.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer0/ShaderPrg.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer0/ShaderPrg.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer0/Tetsurf.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer0/Tetsurf.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer0/Tracker.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer0/Tracker.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer0/Util.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer0/Util.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer0/Vector.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer0/Vector.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer0/os_gl.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer0/os_gl.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer0/Pixmap.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer0/Pixmap.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer0/MyPNG.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer0/MyPNG.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp: In function 'int {anonymous}::write_structure(void*, int, const molfile_atom_t*)': contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:1902:9: warning: unused variable 'last_ctnumber' [-Wunused-variable] int last_ctnumber = -1; ^~~~~~~~~~~~~ c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer1/Basis.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer1/Basis.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/offplugin.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer1/ButMode.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer1/ButMode.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer0/Feedback.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer0/Feedback.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/hash.c -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/hash.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer0/Triangle.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer0/Triangle.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer1/COLLADA.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer1/COLLADA.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer1/Color.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer1/Color.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer1/Extrude.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer1/Extrude.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer1/FontGLUT.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer1/FontGLUT.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer1/FontGLUT9x15.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer1/FontGLUT9x15.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer1/FontGLUTHel12.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer1/FontGLUTHel12.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer1/FontGLUTHel10.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer1/FontGLUTHel10.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer1/FontType.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer1/FontType.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer1/Ortho.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer1/Ortho.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer1/PConv.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer1/PConv.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer1/FontGLUTHel18.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer1/FontGLUTHel18.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer0/Matrix.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer0/Matrix.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer1/Pop.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer1/Pop.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer0/File.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer0/File.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer1/Ray.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer1/Ray.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer1/Scene.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer1/Scene.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer1/SceneRay.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer1/SceneRay.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer1/ScrollBar.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer1/ScrollBar.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer1/Setting.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer1/Setting.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer0/Deferred.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer0/Deferred.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer0/Util2.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer0/Util2.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer1/Symmetry.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer1/Symmetry.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer1/TypeFace.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer1/TypeFace.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer1/Wizard.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer1/Wizard.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer2/AtomInfo.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer2/AtomInfo.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer0/Word.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer0/Word.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer1/PyMOLObject.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer1/PyMOLObject.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer0/GraphicsUtil.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer0/GraphicsUtil.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer1/View.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer1/View.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer0/ShaderMgr.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer0/ShaderMgr.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer2/BondTypeHistory.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer2/BondTypeHistory.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer2/CifMoleculeReader.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer2/CifMoleculeReader.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer1/Character.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer1/Character.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer1/CGO.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer1/CGO.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer0/Sphere.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer0/Sphere.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer1/Movie.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer1/Movie.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer2/DistSet.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer2/DistSet.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer1/Text.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer1/Text.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer1/FontGLUT8x13.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer1/FontGLUT8x13.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer2/CifFile.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer2/CifFile.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer2/HydrogenAdder.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer2/HydrogenAdder.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer1/Font.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer1/Font.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer1/Picking.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer1/Picking.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer2/MmtfMoleculeReader.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer2/MmtfMoleculeReader.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer2/MolV3000.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer2/MolV3000.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer0/Texture.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer0/Texture.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer2/AssemblyHelpers.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer2/AssemblyHelpers.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer2/ObjectCGO.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer2/ObjectCGO.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer2/ObjectDist.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer2/ObjectDist.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer2/ObjectGadgetRamp.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer2/ObjectGadgetRamp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer2/ObjectMap.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer2/ObjectMap.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer1/Seq.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer1/Seq.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer0/Map.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer0/Map.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer2/ObjectMolecule.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer2/ObjectMolecule.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer1/Control.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer1/Control.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer2/ObjectSlice.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer2/ObjectSlice.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer2/ObjectVolume.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer2/ObjectVolume.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer2/RepCartoon.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer2/RepCartoon.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer2/ObjectAlignment.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer2/ObjectAlignment.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer2/GadgetSet.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer2/GadgetSet.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer1/P.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer1/P.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer2/RepDihedral.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer2/RepDihedral.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer2/RepDistLabel.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer2/RepDistLabel.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer2/AtomInfoHistory.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer2/AtomInfoHistory.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer1/SceneRender.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer1/SceneRender.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer2/Mol2Typing.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer2/Mol2Typing.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer2/RepEllipsoid.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer2/RepEllipsoid.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer2/MmodTyping.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer2/MmodTyping.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer2/RepMesh.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer2/RepMesh.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer2/RepNonbondedSphere.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer2/RepNonbondedSphere.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer2/RepSphere.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer2/RepSphere.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer2/ObjectCallback.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer2/ObjectCallback.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer2/RepSphereImmediate.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer2/RepSphereImmediate.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer2/RepWireBond.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer2/RepWireBond.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer2/ObjectSurface.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer2/ObjectSurface.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer2/SculptCache.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer2/SculptCache.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer2/VFont.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer2/VFont.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer2/ObjectGroup.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer2/ObjectGroup.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer3/CifDataValueFormatter.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer3/CifDataValueFormatter.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer2/ObjectGadget.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer2/ObjectGadget.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer3/Executive.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer3/Executive.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer2/SideChainHelper.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer2/SideChainHelper.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer3/Editor.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer3/Editor.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer3/MaeExportHelpers.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer3/MaeExportHelpers.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer3/MovieScene.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer3/MovieScene.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer3/RingFinder.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer3/RingFinder.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer2/RepLabel.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer2/RepLabel.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer2/RepSurface.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer2/RepSurface.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer2/RepDot.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer2/RepDot.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer2/RepDistDash.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer2/RepDistDash.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer3/Selector.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer3/Selector.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer4/Cmd.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer4/Cmd.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer2/RepRibbon.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer2/RepRibbon.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer2/RepSphereGenerate.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer2/RepSphereGenerate.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer3/AtomIterators.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer3/AtomIterators.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer4/PopUp.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer4/PopUp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer5/TestPyMOL.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer5/TestPyMOL.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer3/Seeker.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer3/Seeker.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer2/RepAngle.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer2/RepAngle.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD modules/cealign/src/ccealignmodule.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/modules/cealign/src/ccealignmodule.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 layer3/Executive.cpp: In function 'pymol::Result<> ExecutiveLoad(PyMOLGlobals*, const ExecutiveLoadArgs&)': layer3/Executive.cpp:3914:15: warning: unused variable 'object_props' [-Wunused-variable] const char* object_props = args.object_props.c_str(); ^~~~~~~~~~~~ layer3/Executive.cpp:3915:15: warning: unused variable 'atom_props' [-Wunused-variable] const char* atom_props = args.atom_props.c_str(); ^~~~~~~~~~ layer3/Executive.cpp:3924:8: warning: unused variable 'mimic' [-Wunused-variable] auto mimic = args.mimic; ^~~~~ c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer2/Sculpt.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer2/Sculpt.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD ov/src/OVHeap.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/ov/src/OVHeap.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD ov/src/OVHeapArray.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/ov/src/OVHeapArray.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD ov/src/OVLexicon.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/ov/src/OVLexicon.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD ov/src/OVOneToOne.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/ov/src/OVOneToOne.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer2/RepNonbonded.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer2/RepNonbonded.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD ov/src/OVOneToAny.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/ov/src/OVOneToAny.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD ov/src/ov_utility.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/ov/src/ov_utility.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer3/MoleculeExporter.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer3/MoleculeExporter.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD ov/src/OVRandom.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/ov/src/OVRandom.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer1/ScenePicking.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer1/ScenePicking.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer2/CoordSet.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer2/CoordSet.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer5/main.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer5/main.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer5/PyMOL.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer5/PyMOL.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer1/Rep.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer1/Rep.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD ov/src/OVContext.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/ov/src/OVContext.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer3/PlugIOManager.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer3/PlugIOManager.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer2/RepCylBond.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer2/RepCylBond.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer2/ObjectMesh.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer2/ObjectMesh.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer1/Shaker.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer1/Shaker.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer4/Menu.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer4/Menu.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer2/ObjectMolecule2.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer2/ObjectMolecule2.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer3/ExecutivePython.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer3/ExecutivePython.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.7m -c -MMD layer3/SelectorTmp.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/layer3/SelectorTmp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 c++ -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.9-x86_64-3.7/build/generated/ShaderText.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/mmtf-c/mmtf_parser.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/hash.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/inthash.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o build/temp.dragonfly-5.9-x86_64-3.7/layer0/Block.o build/temp.dragonfly-5.9-x86_64-3.7/layer0/Crystal.o build/temp.dragonfly-5.9-x86_64-3.7/layer0/Deferred.o build/temp.dragonfly-5.9-x86_64-3.7/layer0/Err.o build/temp.dragonfly-5.9-x86_64-3.7/layer0/Feedback.o build/temp.dragonfly-5.9-x86_64-3.7/layer0/Field.o build/temp.dragonfly-5.9-x86_64-3.7/layer0/File.o build/temp.dragonfly-5.9-x86_64-3.7/layer0/GenericBuffer.o build/temp.dragonfly-5.9-x86_64-3.7/layer0/GraphicsUtil.o build/temp.dragonfly-5.9-x86_64-3.7/layer0/Isosurf.o build/temp.dragonfly-5.9-x86_64-3.7/layer0/Map.o build/temp.dragonfly-5.9-x86_64-3.7/layer0/Match.o build/temp.dragonfly-5.9-x86_64-3.7/layer0/Matrix.o build/temp.dragonfly-5.9-x86_64-3.7/layer0/MemoryDebug.o build/temp.dragonfly-5.9-x86_64-3.7/layer0/MyPNG.o build/temp.dragonfly-5.9-x86_64-3.7/layer0/Parse.o build/temp.dragonfly-5.9-x86_64-3.7/layer0/Pixmap.o build/temp.dragonfly-5.9-x86_64-3.7/layer0/PostProcess.o build/temp.dragonfly-5.9-x86_64-3.7/layer0/ShaderMgr.o build/temp.dragonfly-5.9-x86_64-3.7/layer0/ShaderPrg.o build/temp.dragonfly-5.9-x86_64-3.7/layer0/Sphere.o build/temp.dragonfly-5.9-x86_64-3.7/layer0/Tetsurf.o build/temp.dragonfly-5.9-x86_64-3.7/layer0/Texture.o build/temp.dragonfly-5.9-x86_64-3.7/layer0/Tracker.o build/temp.dragonfly-5.9-x86_64-3.7/layer0/Triangle.o build/temp.dragonfly-5.9-x86_64-3.7/layer0/Util.o build/temp.dragonfly-5.9-x86_64-3.7/layer0/Util2.o build/temp.dragonfly-5.9-x86_64-3.7/layer0/Vector.o build/temp.dragonfly-5.9-x86_64-3.7/layer0/Word.o build/temp.dragonfly-5.9-x86_64-3.7/layer0/os_gl.o build/temp.dragonfly-5.9-x86_64-3.7/layer1/Basis.o build/temp.dragonfly-5.9-x86_64-3.7/layer1/ButMode.o build/temp.dragonfly-5.9-x86_64-3.7/layer1/CGO.o build/temp.dragonfly-5.9-x86_64-3.7/layer1/COLLADA.o build/temp.dragonfly-5.9-x86_64-3.7/layer1/Character.o build/temp.dragonfly-5.9-x86_64-3.7/layer1/Color.o build/temp.dragonfly-5.9-x86_64-3.7/layer1/Control.o build/temp.dragonfly-5.9-x86_64-3.7/layer1/Extrude.o build/temp.dragonfly-5.9-x86_64-3.7/layer1/Font.o build/temp.dragonfly-5.9-x86_64-3.7/layer1/FontGLUT.o build/temp.dragonfly-5.9-x86_64-3.7/layer1/FontGLUT8x13.o build/temp.dragonfly-5.9-x86_64-3.7/layer1/FontGLUT9x15.o build/temp.dragonfly-5.9-x86_64-3.7/layer1/FontGLUTHel10.o build/temp.dragonfly-5.9-x86_64-3.7/layer1/FontGLUTHel12.o build/temp.dragonfly-5.9-x86_64-3.7/layer1/FontGLUTHel18.o build/temp.dragonfly-5.9-x86_64-3.7/layer1/FontType.o build/temp.dragonfly-5.9-x86_64-3.7/layer1/Movie.o build/temp.dragonfly-5.9-x86_64-3.7/layer1/Ortho.o build/temp.dragonfly-5.9-x86_64-3.7/layer1/P.o build/temp.dragonfly-5.9-x86_64-3.7/layer1/PConv.o build/temp.dragonfly-5.9-x86_64-3.7/layer1/Picking.o build/temp.dragonfly-5.9-x86_64-3.7/layer1/Pop.o build/temp.dragonfly-5.9-x86_64-3.7/layer1/PyMOLObject.o build/temp.dragonfly-5.9-x86_64-3.7/layer1/Ray.o build/temp.dragonfly-5.9-x86_64-3.7/layer1/Rep.o build/temp.dragonfly-5.9-x86_64-3.7/layer1/Scene.o build/temp.dragonfly-5.9-x86_64-3.7/layer1/ScenePicking.o build/temp.dragonfly-5.9-x86_64-3.7/layer1/SceneRay.o build/temp.dragonfly-5.9-x86_64-3.7/layer1/SceneRender.o build/temp.dragonfly-5.9-x86_64-3.7/layer1/ScrollBar.o build/temp.dragonfly-5.9-x86_64-3.7/layer1/Seq.o build/temp.dragonfly-5.9-x86_64-3.7/layer1/Setting.o build/temp.dragonfly-5.9-x86_64-3.7/layer1/Shaker.o build/temp.dragonfly-5.9-x86_64-3.7/layer1/Symmetry.o build/temp.dragonfly-5.9-x86_64-3.7/layer1/Text.o build/temp.dragonfly-5.9-x86_64-3.7/layer1/TypeFace.o build/temp.dragonfly-5.9-x86_64-3.7/layer1/View.o build/temp.dragonfly-5.9-x86_64-3.7/layer1/Wizard.o build/temp.dragonfly-5.9-x86_64-3.7/layer2/AssemblyHelpers.o build/temp.dragonfly-5.9-x86_64-3.7/layer2/AtomInfo.o build/temp.dragonfly-5.9-x86_64-3.7/layer2/AtomInfoHistory.o build/temp.dragonfly-5.9-x86_64-3.7/layer2/BondTypeHistory.o build/temp.dragonfly-5.9-x86_64-3.7/layer2/CifFile.o build/temp.dragonfly-5.9-x86_64-3.7/layer2/CifMoleculeReader.o build/temp.dragonfly-5.9-x86_64-3.7/layer2/CoordSet.o build/temp.dragonfly-5.9-x86_64-3.7/layer2/DistSet.o build/temp.dragonfly-5.9-x86_64-3.7/layer2/GadgetSet.o build/temp.dragonfly-5.9-x86_64-3.7/layer2/HydrogenAdder.o build/temp.dragonfly-5.9-x86_64-3.7/layer2/MmodTyping.o build/temp.dragonfly-5.9-x86_64-3.7/layer2/MmtfMoleculeReader.o build/temp.dragonfly-5.9-x86_64-3.7/layer2/Mol2Typing.o build/temp.dragonfly-5.9-x86_64-3.7/layer2/MolV3000.o build/temp.dragonfly-5.9-x86_64-3.7/layer2/ObjectAlignment.o build/temp.dragonfly-5.9-x86_64-3.7/layer2/ObjectCGO.o build/temp.dragonfly-5.9-x86_64-3.7/layer2/ObjectCallback.o build/temp.dragonfly-5.9-x86_64-3.7/layer2/ObjectDist.o build/temp.dragonfly-5.9-x86_64-3.7/layer2/ObjectGadget.o build/temp.dragonfly-5.9-x86_64-3.7/layer2/ObjectGadgetRamp.o build/temp.dragonfly-5.9-x86_64-3.7/layer2/ObjectGroup.o build/temp.dragonfly-5.9-x86_64-3.7/layer2/ObjectMap.o build/temp.dragonfly-5.9-x86_64-3.7/layer2/ObjectMesh.o build/temp.dragonfly-5.9-x86_64-3.7/layer2/ObjectMolecule.o build/temp.dragonfly-5.9-x86_64-3.7/layer2/ObjectMolecule2.o build/temp.dragonfly-5.9-x86_64-3.7/layer2/ObjectSlice.o build/temp.dragonfly-5.9-x86_64-3.7/layer2/ObjectSurface.o build/temp.dragonfly-5.9-x86_64-3.7/layer2/ObjectVolume.o build/temp.dragonfly-5.9-x86_64-3.7/layer2/RepAngle.o build/temp.dragonfly-5.9-x86_64-3.7/layer2/RepCartoon.o build/temp.dragonfly-5.9-x86_64-3.7/layer2/RepCylBond.o build/temp.dragonfly-5.9-x86_64-3.7/layer2/RepDihedral.o build/temp.dragonfly-5.9-x86_64-3.7/layer2/RepDistDash.o build/temp.dragonfly-5.9-x86_64-3.7/layer2/RepDistLabel.o build/temp.dragonfly-5.9-x86_64-3.7/layer2/RepDot.o build/temp.dragonfly-5.9-x86_64-3.7/layer2/RepEllipsoid.o build/temp.dragonfly-5.9-x86_64-3.7/layer2/RepLabel.o build/temp.dragonfly-5.9-x86_64-3.7/layer2/RepMesh.o build/temp.dragonfly-5.9-x86_64-3.7/layer2/RepNonbonded.o build/temp.dragonfly-5.9-x86_64-3.7/layer2/RepNonbondedSphere.o build/temp.dragonfly-5.9-x86_64-3.7/layer2/RepRibbon.o build/temp.dragonfly-5.9-x86_64-3.7/layer2/RepSphere.o build/temp.dragonfly-5.9-x86_64-3.7/layer2/RepSphereGenerate.o build/temp.dragonfly-5.9-x86_64-3.7/layer2/RepSphereImmediate.o build/temp.dragonfly-5.9-x86_64-3.7/layer2/RepSurface.o build/temp.dragonfly-5.9-x86_64-3.7/layer2/RepWireBond.o build/temp.dragonfly-5.9-x86_64-3.7/layer2/Sculpt.o build/temp.dragonfly-5.9-x86_64-3.7/layer2/SculptCache.o build/temp.dragonfly-5.9-x86_64-3.7/layer2/SideChainHelper.o build/temp.dragonfly-5.9-x86_64-3.7/layer2/VFont.o build/temp.dragonfly-5.9-x86_64-3.7/layer3/AtomIterators.o build/temp.dragonfly-5.9-x86_64-3.7/layer3/CifDataValueFormatter.o build/temp.dragonfly-5.9-x86_64-3.7/layer3/Editor.o build/temp.dragonfly-5.9-x86_64-3.7/layer3/Executive.o build/temp.dragonfly-5.9-x86_64-3.7/layer3/ExecutivePython.o build/temp.dragonfly-5.9-x86_64-3.7/layer3/MaeExportHelpers.o build/temp.dragonfly-5.9-x86_64-3.7/layer3/MoleculeExporter.o build/temp.dragonfly-5.9-x86_64-3.7/layer3/MovieScene.o build/temp.dragonfly-5.9-x86_64-3.7/layer3/PlugIOManager.o build/temp.dragonfly-5.9-x86_64-3.7/layer3/RingFinder.o build/temp.dragonfly-5.9-x86_64-3.7/layer3/Seeker.o build/temp.dragonfly-5.9-x86_64-3.7/layer3/Selector.o build/temp.dragonfly-5.9-x86_64-3.7/layer3/SelectorTmp.o build/temp.dragonfly-5.9-x86_64-3.7/layer4/Cmd.o build/temp.dragonfly-5.9-x86_64-3.7/layer4/Menu.o build/temp.dragonfly-5.9-x86_64-3.7/layer4/PopUp.o build/temp.dragonfly-5.9-x86_64-3.7/layer5/PyMOL.o build/temp.dragonfly-5.9-x86_64-3.7/layer5/TestPyMOL.o build/temp.dragonfly-5.9-x86_64-3.7/layer5/main.o build/temp.dragonfly-5.9-x86_64-3.7/modules/cealign/src/ccealignmodule.o build/temp.dragonfly-5.9-x86_64-3.7/ov/src/OVContext.o build/temp.dragonfly-5.9-x86_64-3.7/ov/src/OVHeap.o build/temp.dragonfly-5.9-x86_64-3.7/ov/src/OVHeapArray.o build/temp.dragonfly-5.9-x86_64-3.7/ov/src/OVLexicon.o build/temp.dragonfly-5.9-x86_64-3.7/ov/src/OVOneToAny.o build/temp.dragonfly-5.9-x86_64-3.7/ov/src/OVOneToOne.o build/temp.dragonfly-5.9-x86_64-3.7/ov/src/OVRandom.o build/temp.dragonfly-5.9-x86_64-3.7/ov/src/ov_utility.o -L/usr/local/lib -L/usr/local/lib -lpng -lfreetype -lxml2 -lGL -lGLEW -lnetcdf -lexecinfo -lpython3.7m -o build/lib.dragonfly-5.9-x86_64-3.7/pymol/_cmd.so building 'chempy.champ._champ' extension creating build/temp.dragonfly-5.9-x86_64-3.7/contrib/champ cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Icontrib/champ -I/usr/local/include/python3.7m -c -MMD contrib/champ/champ.c -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/champ/champ.o cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Icontrib/champ -I/usr/local/include/python3.7m -c -MMD contrib/champ/champ_module.c -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/champ/champ_module.o cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Icontrib/champ -I/usr/local/include/python3.7m -c -MMD contrib/champ/os_memory.c -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/champ/os_memory.o cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Icontrib/champ -I/usr/local/include/python3.7m -c -MMD contrib/champ/err2.c -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/champ/err2.o cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Icontrib/champ -I/usr/local/include/python3.7m -c -MMD contrib/champ/vla.c -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/champ/vla.o cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Icontrib/champ -I/usr/local/include/python3.7m -c -MMD contrib/champ/feedback2.c -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/champ/feedback2.o contrib/champ/os_memory.c: In function 'OSMemoryZero': contrib/champ/os_memory.c:55:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] while(count&&(((int)p)&mask)) { ^ contrib/champ/os_memory.c: In function 'OSMemoryHashAdd': contrib/champ/os_memory.c:137:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] hash=(int)rec; ^ contrib/champ/os_memory.c: In function 'OSMemoryHashRemove': contrib/champ/os_memory.c:150:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] hash=(int)rec; ^ cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Icontrib/champ -I/usr/local/include/python3.7m -c -MMD contrib/champ/chiral.c -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/champ/chiral.o cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Icontrib/champ -I/usr/local/include/python3.7m -c -MMD contrib/champ/sort.c -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/champ/sort.o cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Icontrib/champ -I/usr/local/include/python3.7m -c -MMD contrib/champ/list.c -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/champ/list.o cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Icontrib/champ -I/usr/local/include/python3.7m -c -MMD contrib/champ/strblock.c -o build/temp.dragonfly-5.9-x86_64-3.7/contrib/champ/strblock.o cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.9-x86_64-3.7/contrib/champ/champ.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/champ/champ_module.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/champ/chiral.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/champ/err2.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/champ/feedback2.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/champ/list.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/champ/os_memory.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/champ/sort.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/champ/strblock.o build/temp.dragonfly-5.9-x86_64-3.7/contrib/champ/vla.o -L/usr/local/lib -lpython3.7m -o build/lib.dragonfly-5.9-x86_64-3.7/chempy/champ/_champ.so SUCCEEDED 00:01:23 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> py37-pymol-2.4.0 depends on package: py37-msgpack>0 - found ===> py37-pymol-2.4.0 depends on package: py37-Pmw>0 - found ===> py37-pymol-2.4.0 depends on package: py37-numpy>=1.16,1<1.20,1 - found ===> py37-pymol-2.4.0 depends on package: py37-setuptools>0 - found ===> py37-pymol-2.4.0 depends on file: /usr/local/bin/python3.7 - found ===> py37-pymol-2.4.0 depends on package: py37-qt5-core>=5.15.2 - found ===> py37-pymol-2.4.0 depends on package: py37-qt5-gui>=5.15.2 - found ===> py37-pymol-2.4.0 depends on package: py37-qt5-opengl>=5.15.2 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for py37-pymol-2.4.0 ===> py37-pymol-2.4.0 depends on package: py37-msgpack>0 - found ===> py37-pymol-2.4.0 depends on package: py37-Pmw>0 - found ===> py37-pymol-2.4.0 depends on package: py37-numpy>=1.16,1<1.20,1 - found ===> py37-pymol-2.4.0 depends on package: py37-setuptools>0 - found ===> py37-pymol-2.4.0 depends on file: /usr/local/bin/python3.7 - found ===> py37-pymol-2.4.0 depends on package: py37-qt5-core>=5.15.2 - found ===> py37-pymol-2.4.0 depends on package: py37-qt5-gui>=5.15.2 - found ===> py37-pymol-2.4.0 depends on package: py37-qt5-opengl>=5.15.2 - found ===> Generating temporary packing list running install running build running build_py running build_ext running install_lib creating /construction/science/py-pymol/stage/usr/local/lib/python3.7 creating /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages creating /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/menu.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/wizarding.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/commanding.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/headering.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol creating /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/contrib copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/contrib/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/contrib copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/gui.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/monitoring.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/api.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/parser.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/util.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/creating.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/setting.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/helping.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/computing.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/vfont.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol creating /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/opengl creating /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/opengl/glu copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/opengl/glu/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/opengl/glu creating /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/opengl/glut copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/opengl/glut/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/opengl/glut creating /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/opengl/gl copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/opengl/gl/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/opengl/gl copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/opengl/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/opengl copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/colorramping.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/experimenting.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/locking.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/lazyio.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/__main__.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/seqalign.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/keywords.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/cmd.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol creating /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/Qt copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/Qt/utils.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/Qt copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/Qt/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/Qt copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/diagnosing.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/xray.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/externing.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/keyboard.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/selector.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/preset.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol creating /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/plugins copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/plugins/installation.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/plugins copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/plugins/managergui_qt.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/plugins copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/plugins/managergui.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/plugins copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/plugins/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/plugins copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/plugins/repository.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/plugins copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/plugins/legacysupport.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/plugins copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/callback.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/importing.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/editor.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/selecting.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/fitting.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/editing.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol creating /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/wizard copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/wizard/cleanup.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/wizard copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/wizard/distance.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/wizard copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/wizard/stereodemo.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/wizard copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/wizard/appearance.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/wizard copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/wizard/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/wizard copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/wizard/sculpting.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/wizard copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/wizard/command.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/wizard copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/wizard/demo.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/wizard copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/wizard/toggle.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/wizard copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/wizard/mutagenesis.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/wizard copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/wizard/filter.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/wizard copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/wizard/measurement.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/wizard copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/wizard/renaming.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/wizard copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/wizard/fedora.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/wizard copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/wizard/box.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/wizard copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/wizard/benchmark.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/wizard copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/wizard/nucmutagenesis.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/wizard copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/wizard/openvr.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/wizard copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/wizard/message.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/wizard copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/wizard/charge.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/wizard copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/wizard/security.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/wizard copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/wizard/label.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/wizard copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/wizard/pseudoatom.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/wizard copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/wizard/density.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/wizard copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/wizard/annotation.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/wizard copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/wizard/pair_fit.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/wizard copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/wizard/dragging.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/wizard copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/rpc.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/checking.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/constants_palette.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/controlling.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/pymolhttpd.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/moving.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/parsing.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/internal.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/viewing.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/feedingback.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/cgo.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/xwin.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/shortcut.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/invocation.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/morphing.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/colorprinting.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/_gui.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/querying.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/exporting.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/povray.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/movie.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/completing.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/constants.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol creating /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/stereochemistry copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/stereochemistry/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/stereochemistry copying build/lib.dragonfly-5.9-x86_64-3.7/pymol/_cmd.so -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol creating /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy creating /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/fragments copying build/lib.dragonfly-5.9-x86_64-3.7/chempy/fragments/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/fragments copying build/lib.dragonfly-5.9-x86_64-3.7/chempy/sdf.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy copying build/lib.dragonfly-5.9-x86_64-3.7/chempy/water_amber.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy copying build/lib.dragonfly-5.9-x86_64-3.7/chempy/protein.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy copying build/lib.dragonfly-5.9-x86_64-3.7/chempy/protein_residues.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy copying build/lib.dragonfly-5.9-x86_64-3.7/chempy/gms.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy copying build/lib.dragonfly-5.9-x86_64-3.7/chempy/io.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy copying build/lib.dragonfly-5.9-x86_64-3.7/chempy/protein_amber.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy creating /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/fast copying build/lib.dragonfly-5.9-x86_64-3.7/chempy/fast/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/fast copying build/lib.dragonfly-5.9-x86_64-3.7/chempy/bonds.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy copying build/lib.dragonfly-5.9-x86_64-3.7/chempy/arc.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy copying build/lib.dragonfly-5.9-x86_64-3.7/chempy/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy copying build/lib.dragonfly-5.9-x86_64-3.7/chempy/hetatm.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy copying build/lib.dragonfly-5.9-x86_64-3.7/chempy/mol.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy copying build/lib.dragonfly-5.9-x86_64-3.7/chempy/lst.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy copying build/lib.dragonfly-5.9-x86_64-3.7/chempy/xyz.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy copying build/lib.dragonfly-5.9-x86_64-3.7/chempy/bond_amber.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy copying build/lib.dragonfly-5.9-x86_64-3.7/chempy/brick.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy copying build/lib.dragonfly-5.9-x86_64-3.7/chempy/mass.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy copying build/lib.dragonfly-5.9-x86_64-3.7/chempy/protein_mmff.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy creating /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/tinker copying build/lib.dragonfly-5.9-x86_64-3.7/chempy/tinker/realtime.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/tinker copying build/lib.dragonfly-5.9-x86_64-3.7/chempy/tinker/state.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/tinker copying build/lib.dragonfly-5.9-x86_64-3.7/chempy/tinker/amber.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/tinker copying build/lib.dragonfly-5.9-x86_64-3.7/chempy/tinker/keyword.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/tinker copying build/lib.dragonfly-5.9-x86_64-3.7/chempy/tinker/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/tinker copying build/lib.dragonfly-5.9-x86_64-3.7/chempy/protein_amber99.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy copying build/lib.dragonfly-5.9-x86_64-3.7/chempy/water_residues.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy copying build/lib.dragonfly-5.9-x86_64-3.7/chempy/cpv.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy creating /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/bmin copying build/lib.dragonfly-5.9-x86_64-3.7/chempy/bmin/realtime.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/bmin copying build/lib.dragonfly-5.9-x86_64-3.7/chempy/bmin/util.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/bmin copying build/lib.dragonfly-5.9-x86_64-3.7/chempy/bmin/state.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/bmin copying build/lib.dragonfly-5.9-x86_64-3.7/chempy/bmin/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/bmin copying build/lib.dragonfly-5.9-x86_64-3.7/chempy/bmin/commands.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/bmin creating /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/champ copying build/lib.dragonfly-5.9-x86_64-3.7/chempy/champ/_champ.so -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/champ copying build/lib.dragonfly-5.9-x86_64-3.7/chempy/champ/amber99.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/champ copying build/lib.dragonfly-5.9-x86_64-3.7/chempy/champ/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/champ copying build/lib.dragonfly-5.9-x86_64-3.7/chempy/champ/formal_charges.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/champ copying build/lib.dragonfly-5.9-x86_64-3.7/chempy/champ/assign.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/champ copying build/lib.dragonfly-5.9-x86_64-3.7/chempy/mae.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy copying build/lib.dragonfly-5.9-x86_64-3.7/chempy/neighbor.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy copying build/lib.dragonfly-5.9-x86_64-3.7/chempy/map.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy copying build/lib.dragonfly-5.9-x86_64-3.7/chempy/cc1.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy creating /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/mmtf copying build/lib.dragonfly-5.9-x86_64-3.7/chempy/mmtf/io.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/mmtf copying build/lib.dragonfly-5.9-x86_64-3.7/chempy/mmtf/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/mmtf copying build/lib.dragonfly-5.9-x86_64-3.7/chempy/charge.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy copying build/lib.dragonfly-5.9-x86_64-3.7/chempy/cif.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy copying build/lib.dragonfly-5.9-x86_64-3.7/chempy/pkl.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy copying build/lib.dragonfly-5.9-x86_64-3.7/chempy/dictdb.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy copying build/lib.dragonfly-5.9-x86_64-3.7/chempy/models.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy copying build/lib.dragonfly-5.9-x86_64-3.7/chempy/mol2.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy copying build/lib.dragonfly-5.9-x86_64-3.7/chempy/bond_mmff.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy copying build/lib.dragonfly-5.9-x86_64-3.7/chempy/solvate.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy copying build/lib.dragonfly-5.9-x86_64-3.7/chempy/gamess1.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy copying build/lib.dragonfly-5.9-x86_64-3.7/chempy/mmd.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy copying build/lib.dragonfly-5.9-x86_64-3.7/chempy/pdb.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy copying build/lib.dragonfly-5.9-x86_64-3.7/chempy/place.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy creating /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol2 copying build/lib.dragonfly-5.9-x86_64-3.7/pymol2/cmd2.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol2 copying build/lib.dragonfly-5.9-x86_64-3.7/pymol2/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol2 creating /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_tk copying build/lib.dragonfly-5.9-x86_64-3.7/pmg_tk/PMGApp.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_tk copying build/lib.dragonfly-5.9-x86_64-3.7/pmg_tk/volume.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_tk copying build/lib.dragonfly-5.9-x86_64-3.7/pmg_tk/SetEditor.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_tk creating /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_tk/skins copying build/lib.dragonfly-5.9-x86_64-3.7/pmg_tk/skins/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_tk/skins creating /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_tk/skins/demo copying build/lib.dragonfly-5.9-x86_64-3.7/pmg_tk/skins/demo/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_tk/skins/demo creating /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_tk/skins/normal copying build/lib.dragonfly-5.9-x86_64-3.7/pmg_tk/skins/normal/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_tk/skins/normal copying build/lib.dragonfly-5.9-x86_64-3.7/pmg_tk/skins/normal/builder.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_tk/skins/normal copying build/lib.dragonfly-5.9-x86_64-3.7/pmg_tk/skins/normal/ModalWindow.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_tk/skins/normal copying build/lib.dragonfly-5.9-x86_64-3.7/pmg_tk/ColorEditor.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_tk copying build/lib.dragonfly-5.9-x86_64-3.7/pmg_tk/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_tk copying build/lib.dragonfly-5.9-x86_64-3.7/pmg_tk/TextEditor.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_tk copying build/lib.dragonfly-5.9-x86_64-3.7/pmg_tk/Setting.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_tk copying build/lib.dragonfly-5.9-x86_64-3.7/pmg_tk/Demo.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_tk creating /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_tk/startup copying build/lib.dragonfly-5.9-x86_64-3.7/pmg_tk/startup/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_tk/startup copying build/lib.dragonfly-5.9-x86_64-3.7/pmg_tk/startup/apbs_tools.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_tk/startup copying build/lib.dragonfly-5.9-x86_64-3.7/pmg_tk/PyMOLMapLoad.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_tk creating /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_qt copying build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt/volume.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_qt copying build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_qt copying build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt/mimic_tk.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_qt copying build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt/advanced_settings_gui.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_qt copying build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt/file_dialogs.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_qt copying build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt/builder.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_qt copying build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt/pymol_qt_gui.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_qt copying build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt/keymapping.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_qt copying build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt/TextEditor.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_qt creating /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_qt/syntax copying build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt/syntax/pmlparser.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_qt/syntax copying build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt/syntax/pml.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_qt/syntax copying build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt/syntax/python.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_qt/syntax copying build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt/syntax/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_qt/syntax copying build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt/mimic_pmg_tk.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_qt copying build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt/pymol_gl_widget.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_qt creating /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_qt/forms copying build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt/forms/movieexport.ui -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_qt/forms copying build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt/forms/pluginmanager.ui -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_qt/forms copying build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt/forms/save_object.ui -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_qt/forms copying build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt/forms/colors.ui -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_qt/forms copying build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt/forms/render.ui -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_qt/forms copying build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt/forms/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_qt/forms copying build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt/forms/load_mae.ui -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_qt/forms copying build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt/forms/askpartial.ui -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_qt/forms copying build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt/forms/pluginitem.ui -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_qt/forms copying build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt/forms/load_mtz.ui -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_qt/forms copying build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt/forms/load_map.ui -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_qt/forms copying build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt/forms/save_molecule.ui -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_qt/forms copying build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt/forms/load_aln.ui -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_qt/forms copying build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt/forms/png.ui -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_qt/forms copying build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt/forms/fetch.ui -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_qt/forms copying build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt/forms/props.ui -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_qt/forms copying build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt/forms/load_traj.ui -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_qt/forms copying build/lib.dragonfly-5.9-x86_64-3.7/pmg_qt/properties_dialog.py -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_qt byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/menu.py to menu.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/wizarding.py to wizarding.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/commanding.py to commanding.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/headering.py to headering.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/contrib/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/gui.py to gui.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/monitoring.py to monitoring.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/api.py to api.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/parser.py to parser.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/util.py to util.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/creating.py to creating.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/setting.py to setting.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/helping.py to helping.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/computing.py to computing.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/vfont.py to vfont.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/opengl/glu/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/opengl/glut/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/opengl/gl/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/opengl/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/colorramping.py to colorramping.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/experimenting.py to experimenting.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/locking.py to locking.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/lazyio.py to lazyio.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/__main__.py to __main__.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/seqalign.py to seqalign.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/keywords.py to keywords.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/cmd.py to cmd.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/Qt/utils.py to utils.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/Qt/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/diagnosing.py to diagnosing.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/xray.py to xray.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/externing.py to externing.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/keyboard.py to keyboard.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/selector.py to selector.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/preset.py to preset.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/plugins/installation.py to installation.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/plugins/managergui_qt.py to managergui_qt.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/plugins/managergui.py to managergui.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/plugins/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/plugins/repository.py to repository.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/plugins/legacysupport.py to legacysupport.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/callback.py to callback.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/importing.py to importing.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/editor.py to editor.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/selecting.py to selecting.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/fitting.py to fitting.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/editing.py to editing.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/wizard/cleanup.py to cleanup.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/wizard/distance.py to distance.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/wizard/stereodemo.py to stereodemo.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/wizard/appearance.py to appearance.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/wizard/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/wizard/sculpting.py to sculpting.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/wizard/command.py to command.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/wizard/demo.py to demo.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/wizard/toggle.py to toggle.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/wizard/mutagenesis.py to mutagenesis.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/wizard/filter.py to filter.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/wizard/measurement.py to measurement.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/wizard/renaming.py to renaming.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/wizard/fedora.py to fedora.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/wizard/box.py to box.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/wizard/benchmark.py to benchmark.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/wizard/nucmutagenesis.py to nucmutagenesis.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/wizard/openvr.py to openvr.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/wizard/message.py to message.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/wizard/charge.py to charge.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/wizard/security.py to security.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/wizard/label.py to label.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/wizard/pseudoatom.py to pseudoatom.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/wizard/density.py to density.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/wizard/annotation.py to annotation.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/wizard/pair_fit.py to pair_fit.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/wizard/dragging.py to dragging.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/rpc.py to rpc.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/checking.py to checking.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/constants_palette.py to constants_palette.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/controlling.py to controlling.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/pymolhttpd.py to pymolhttpd.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/moving.py to moving.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/parsing.py to parsing.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/internal.py to internal.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/viewing.py to viewing.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/feedingback.py to feedingback.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/cgo.py to cgo.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/xwin.py to xwin.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/shortcut.py to shortcut.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/invocation.py to invocation.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/morphing.py to morphing.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/colorprinting.py to colorprinting.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/_gui.py to _gui.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/querying.py to querying.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/exporting.py to exporting.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/povray.py to povray.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/movie.py to movie.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/completing.py to completing.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/constants.py to constants.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/stereochemistry/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/fragments/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/sdf.py to sdf.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/water_amber.py to water_amber.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/protein.py to protein.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/protein_residues.py to protein_residues.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/gms.py to gms.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/io.py to io.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/protein_amber.py to protein_amber.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/fast/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/bonds.py to bonds.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/arc.py to arc.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/hetatm.py to hetatm.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/mol.py to mol.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/lst.py to lst.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/xyz.py to xyz.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/bond_amber.py to bond_amber.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/brick.py to brick.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/mass.py to mass.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/protein_mmff.py to protein_mmff.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/tinker/realtime.py to realtime.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/tinker/state.py to state.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/tinker/amber.py to amber.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/tinker/keyword.py to keyword.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/tinker/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/protein_amber99.py to protein_amber99.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/water_residues.py to water_residues.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/cpv.py to cpv.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/bmin/realtime.py to realtime.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/bmin/util.py to util.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/bmin/state.py to state.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/bmin/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/bmin/commands.py to commands.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/champ/amber99.py to amber99.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/champ/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/champ/formal_charges.py to formal_charges.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/champ/assign.py to assign.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/mae.py to mae.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/neighbor.py to neighbor.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/map.py to map.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/cc1.py to cc1.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/mmtf/io.py to io.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/mmtf/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/charge.py to charge.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/cif.py to cif.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/pkl.py to pkl.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/dictdb.py to dictdb.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/models.py to models.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/mol2.py to mol2.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/bond_mmff.py to bond_mmff.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/solvate.py to solvate.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/gamess1.py to gamess1.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/mmd.py to mmd.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/pdb.py to pdb.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/chempy/place.py to place.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol2/cmd2.py to cmd2.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol2/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_tk/PMGApp.py to PMGApp.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_tk/volume.py to volume.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_tk/SetEditor.py to SetEditor.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_tk/skins/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_tk/skins/demo/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_tk/skins/normal/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_tk/skins/normal/builder.py to builder.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_tk/skins/normal/ModalWindow.py to ModalWindow.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_tk/ColorEditor.py to ColorEditor.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_tk/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_tk/TextEditor.py to TextEditor.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_tk/Setting.py to Setting.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_tk/Demo.py to Demo.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_tk/startup/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_tk/startup/apbs_tools.py to apbs_tools.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_tk/PyMOLMapLoad.py to PyMOLMapLoad.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_qt/volume.py to volume.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_qt/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_qt/mimic_tk.py to mimic_tk.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_qt/advanced_settings_gui.py to advanced_settings_gui.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_qt/file_dialogs.py to file_dialogs.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_qt/builder.py to builder.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_qt/pymol_qt_gui.py to pymol_qt_gui.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_qt/keymapping.py to keymapping.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_qt/TextEditor.py to TextEditor.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_qt/syntax/pmlparser.py to pmlparser.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_qt/syntax/pml.py to pml.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_qt/syntax/python.py to python.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_qt/syntax/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_qt/mimic_pmg_tk.py to mimic_pmg_tk.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_qt/pymol_gl_widget.py to pymol_gl_widget.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_qt/forms/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pmg_qt/properties_dialog.py to properties_dialog.cpython-37.pyc writing byte-compilation script '/tmp/tmp94zrc2_f.py' /usr/local/bin/python3.7 /tmp/tmp94zrc2_f.py removing /tmp/tmp94zrc2_f.py running install_egg_info running egg_info creating pymol.egg-info writing pymol.egg-info/PKG-INFO writing dependency_links to pymol.egg-info/dependency_links.txt writing top-level names to pymol.egg-info/top_level.txt writing manifest file 'pymol.egg-info/SOURCES.txt' reading manifest file 'pymol.egg-info/SOURCES.txt' writing manifest file 'pymol.egg-info/SOURCES.txt' Copying pymol.egg-info to /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol-2.4.0-py3.7.egg-info writing list of installed files to '/construction/science/py-pymol/.PLIST.pymodtmp' creating /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/pymol_path copying LICENSE -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/pymol_path copying data -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/pymol_path/data copying test -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/pymol_path/test copying examples -> /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol/pymol_path/examples ===> Creating unique files: Move MAN files needing SUFFIX ===> Creating unique files: Move files needing SUFFIX Move: bin/pymol --> bin/pymol-3.7 Link: @bin/pymol --> bin/pymol-3.7 ====> Compressing man pages (compress-man) if [ -d "/construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol-2.4.0-py3.7.egg-info" ]; then /bin/ls /construction/science/py-pymol/stage/usr/local/lib/python3.7/site-packages/pymol-2.4.0-py3.7.egg-info | while read f; do echo lib/python3.7/site-packages/pymol-2.4.0-py3.7.egg-info/${f} >> /construction/science/py-pymol/.PLIST.mktmp; done; fi; ====> Running Q/A tests (stage-qa) Error: /usr/local/lib/python3.7/site-packages/chempy/champ/_champ.so is linked to /usr/local/lib/libintl.so.8 from devel/gettext-runtime but it is not declared as a dependency Warning: you need USES+=gettext-runtime Error: /usr/local/lib/python3.7/site-packages/pymol/_cmd.so is linked to /usr/local/lib/libdrm.so.2 from graphics/libdrm but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libdrm.so:graphics/libdrm Error: /usr/local/lib/python3.7/site-packages/pymol/_cmd.so is linked to /usr/local/lib/libX11.so.6 from x11/libX11 but it is not declared as a dependency Warning: you need USE_XORG+=x11 Error: /usr/local/lib/python3.7/site-packages/pymol/_cmd.so is linked to /usr/local/lib/libxcb-glx.so.0 from x11/libxcb but it is not declared as a dependency Warning: you need USE_XORG+=xcb Error: /usr/local/lib/python3.7/site-packages/pymol/_cmd.so is linked to /usr/local/lib/libxcb.so.1 from x11/libxcb but it is not declared as a dependency Warning: you need USE_XORG+=xcb Error: /usr/local/lib/python3.7/site-packages/pymol/_cmd.so is linked to /usr/local/lib/libX11-xcb.so.1 from x11/libX11 but it is not declared as a dependency Warning: you need USE_XORG+=x11 Error: /usr/local/lib/python3.7/site-packages/pymol/_cmd.so is linked to /usr/local/lib/libxcb-dri2.so.0 from x11/libxcb but it is not declared as a dependency Warning: you need USE_XORG+=xcb Error: /usr/local/lib/python3.7/site-packages/pymol/_cmd.so is linked to /usr/local/lib/libXext.so.6 from x11/libXext but it is not declared as a dependency Warning: you need USE_XORG+=xext Error: /usr/local/lib/python3.7/site-packages/pymol/_cmd.so is linked to /usr/local/lib/libXfixes.so.3 from x11/libXfixes but it is not declared as a dependency Warning: you need USE_XORG+=xfixes Error: /usr/local/lib/python3.7/site-packages/pymol/_cmd.so is linked to /usr/local/lib/libXdamage.so.1 from x11/libXdamage but it is not declared as a dependency Warning: you need USE_XORG+=xdamage Error: /usr/local/lib/python3.7/site-packages/pymol/_cmd.so is linked to /usr/local/lib/libXxf86vm.so.1 from x11/libXxf86vm but it is not declared as a dependency Warning: you need USE_XORG+=xxf86vm Error: /usr/local/lib/python3.7/site-packages/pymol/_cmd.so is linked to /usr/local/lib/libexpat.so.1 from textproc/expat2 but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libexpat.so:textproc/expat2 Error: /usr/local/lib/python3.7/site-packages/pymol/_cmd.so is linked to /usr/local/lib/libhdf5_hl.so.100 from science/hdf5 but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libhdf5_hl.so:science/hdf5 Error: /usr/local/lib/python3.7/site-packages/pymol/_cmd.so is linked to /usr/local/lib/libhdf5.so.103 from science/hdf5 but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libhdf5.so:science/hdf5 Error: /usr/local/lib/python3.7/site-packages/pymol/_cmd.so is linked to /usr/local/lib/libcurl.so.4 from ftp/curl but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libcurl.so:ftp/curl Error: /usr/local/lib/python3.7/site-packages/pymol/_cmd.so is linked to /usr/local/lib/libsz.so.2 from science/szip but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libsz.so:science/szip Error: /usr/local/lib/python3.7/site-packages/pymol/_cmd.so is linked to /usr/local/lib/libXau.so.6 from x11/libXau but it is not declared as a dependency Warning: you need USE_XORG+=xau Error: /usr/local/lib/python3.7/site-packages/pymol/_cmd.so is linked to /usr/local/lib/libXdmcp.so.6 from x11/libXdmcp but it is not declared as a dependency Warning: you need USE_XORG+=xdmcp Error: /usr/local/lib/python3.7/site-packages/pymol/_cmd.so is linked to /usr/local/lib/libnghttp2.so.14 from www/libnghttp2 but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libnghttp2.so:www/libnghttp2 Error: /usr/local/lib/python3.7/site-packages/pymol/_cmd.so is linked to /usr/local/lib/libssl.so.11 from security/openssl but it is not declared as a dependency Warning: you need USES=ssl Error: /usr/local/lib/python3.7/site-packages/pymol/_cmd.so is linked to /usr/local/lib/libcrypto.so.11 from security/openssl but it is not declared as a dependency Warning: you need USES=ssl Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:18 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- ====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for py37-pymol-2.4.0 file sizes/checksums [1087]: 0% file sizes/checksums [1087]: 9% file sizes/checksums [1087]: 18% file sizes/checksums [1087]: 27% file sizes/checksums [1087]: 36% file sizes/checksums [1087]: 45% file sizes/checksums [1087]: 55% file sizes/checksums [1087]: 64% file sizes/checksums [1087]: 73% file sizes/checksums [1087]: 82% file sizes/checksums [1087]: 91% file sizes/checksums [1087]: 100% packing files [1087]: 0% packing files [1087]: 9% packing files [1087]: 18% packing files [1087]: 27% packing files [1087]: 36% packing files [1087]: 45% packing files [1087]: 55% packing files [1087]: 64% packing files [1087]: 73% packing files [1087]: 82% packing files [1087]: 91% packing files [1087]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:53 TOTAL TIME 00:04:31