------------------------------------------------------------------------------- -- Phase: Environment ------------------------------------------------------------------------------- NO_DEPENDS=1 FLAVOR=py37 UNAME_r=5.9 UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=unknown UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 LANG=C HOME=/root USER=root TERM=dumb SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: showconfig ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ENV ------------------------------------------------------------------------------- PYTHON="/usr/local/bin/python3.7" XDG_DATA_HOME=/construction/science/py-oddt XDG_CONFIG_HOME=/construction/science/py-oddt HOME=/construction/science/py-oddt TMPDIR="/tmp" PATH=/construction/science/py-oddt/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ARGS ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ENV ------------------------------------------------------------------------------- XDG_DATA_HOME=/construction/science/py-oddt XDG_CONFIG_HOME=/construction/science/py-oddt HOME=/construction/science/py-oddt TMPDIR="/tmp" PATH=/construction/science/py-oddt/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ARGS ------------------------------------------------------------------------------- DESTDIR=/construction/science/py-oddt/stage SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: PLIST_SUB ------------------------------------------------------------------------------- PYTHON_INCLUDEDIR=include/python3.7m PYTHON_LIBDIR=lib/python3.7 PYTHON_PLATFORM=dragonfly5 PYTHON_SITELIBDIR=lib/python3.7/site-packages PYTHON_SUFFIX=37 PYTHON_EXT_SUFFIX= PYTHON_VER=3.7 PYTHON_VERSION=python3.7 PYTHON2="@comment " PYTHON3="" OSREL=5.9 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/py37-oddt" EXAMPLESDIR="share/examples/py37-oddt" DATADIR="share/py37-oddt" WWWDIR="www/py37-oddt" ETCDIR="etc/py37-oddt" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: SUB_LIST ------------------------------------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/py37-oddt DOCSDIR=/usr/local/share/doc/py37-oddt EXAMPLESDIR=/usr/local/share/examples/py37-oddt WWWDIR=/usr/local/www/py37-oddt ETCDIR=/usr/local/etc/py37-oddt SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: /etc/make.conf ------------------------------------------------------------------------------- DPORTS_BUILDER=yes DISABLE_LICENSES=yes DEFAULT_VERSIONS=ssl=openssl FORCE_PACKAGE=yes DEVELOPER=yes USE_PACKAGE_DEPENDS_ONLY=yes PORTSDIR=/xports PORT_DBDIR=/options PKG_DBDIR=/var/db/pkg PKG_CACHEDIR=/var/cache/pkg PKG_SUFX=.txz DEVELOPER=1 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500906 OSVERSION=9999999 OSREL=5.9 _OSRELEASE=5.9-SYNTH DISTDIR=/distfiles WRKDIRPREFIX=/construction BATCH=yes PACKAGE_BUILDING=yes PKG_CREATE_VERBOSE=yes MAKE_JOBS_NUMBER=10 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/gmp-6.2.1.txz Installing /packages/All/mpfr-4.1.0.txz Installing /packages/All/metis-5.1.0_8.txz ===== Message from metis-5.1.0_8: -- ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Installing /packages/All/tbb-2020.3_1.txz Installing /packages/All/mpc-1.1.0_2.txz UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/gettext-runtime-0.21.txz Installing /packages/All/binutils-2.33.1_4,1.txz Installing /packages/All/gcc8-8.4.0.txz ===== Message from gcc8-8.4.0: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/openblas-0.3.12,1.txz Installing /packages/All/suitesparse-5.8.1.txz Installing /packages/All/libffi-3.3_1.txz Installing /packages/All/expat-2.2.10.txz Installing /packages/All/ncurses-6.2.20210116.txz Installing /packages/All/readline-8.0.4_1.txz Installing /packages/All/openssl-1.1.1i,1.txz Installing /packages/All/python37-3.7.9_1.txz ===== Message from python37-3.7.9_1: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py37-gdbm databases/py-gdbm@py37 py37-sqlite3 databases/py-sqlite3@py37 py37-tkinter x11-toolkits/py-tkinter@py37 Installing /packages/All/py37-setuptools-44.0.0.txz Installing /packages/All/py37-numpy-1.16.6,1.txz Installing /packages/All/py37-joblib-0.13.0.txz Installing /packages/All/py37-six-1.15.0.txz Installing /packages/All/py37-dateutil-2.8.1.txz Installing /packages/All/py37-pytz-2020.5,1.txz Installing /packages/All/libedit-3.1.20191231,1.txz Installing /packages/All/sqlite3-3.34.0,1.txz Installing /packages/All/py37-sqlite3-3.7.9_7.txz Installing /packages/All/py37-bottleneck-1.3.2.txz Installing /packages/All/py37-numexpr-2.7.2.txz Installing /packages/All/py37-pandas-0.24.2_1,1.txz ===== Message from py37-pandas-0.24.2_1,1: -- Install math/py-statsmodels to enable parts of pandas.stats. Install devel/py-xarray to enable the to_xarray() function. Installing /packages/All/blas-3.5.0_6.txz Installing /packages/All/py37-scipy-1.5.4_1.txz Installing /packages/All/py37-scikit-learn-0.22_1.txz UNFLAVORED devel/binutils -> use devel/binutils@native SUCCEEDED 00:00:48 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> py37-oddt-0.7 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> py37-oddt-0.7 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py37-oddt-0.7 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> py37-oddt-0.7 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py37-oddt-0.7 for building => SHA256 Checksum OK for oddt-oddt-0.7_GH0.tar.gz. SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> py37-oddt-0.7 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py37-oddt-0.7 for building ===> Extracting for py37-oddt-0.7 => SHA256 Checksum OK for oddt-oddt-0.7_GH0.tar.gz. Extracted Memory Use: 52.44M SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for py37-oddt-0.7 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> py37-oddt-0.7 depends on package: py37-numpy>=1.16,1<1.20,1 - found ===> py37-oddt-0.7 depends on package: py37-joblib>=0.9.4 - found ===> py37-oddt-0.7 depends on package: py37-pandas>=0.19.2 - found ===> py37-oddt-0.7 depends on package: py37-scikit-learn>=0.18 - found ===> py37-oddt-0.7 depends on package: py37-scipy>=0.17 - found ===> py37-oddt-0.7 depends on package: py37-six>0 - found ===> py37-oddt-0.7 depends on package: py37-setuptools>0 - found ===> py37-oddt-0.7 depends on file: /usr/local/bin/python3.7 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> py37-oddt-0.7 depends on package: py37-numpy>=1.16,1<1.20,1 - found ===> py37-oddt-0.7 depends on package: py37-joblib>=0.9.4 - found ===> py37-oddt-0.7 depends on package: py37-pandas>=0.19.2 - found ===> py37-oddt-0.7 depends on package: py37-scikit-learn>=0.18 - found ===> py37-oddt-0.7 depends on package: py37-scipy>=0.17 - found ===> py37-oddt-0.7 depends on package: py37-six>0 - found ===> py37-oddt-0.7 depends on package: py37-setuptools>0 - found ===> py37-oddt-0.7 depends on file: /usr/local/bin/python3.7 - found ===> Configuring for py37-oddt-0.7 /construction/science/py-oddt/oddt-0.7/oddt/__init__.py:50: UserWarning: No toolkit is present. Install OpenBabel or RDKit warnings.warn('No toolkit is present. Install OpenBabel or RDKit') running config SUCCEEDED 00:00:04 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for py37-oddt-0.7 /construction/science/py-oddt/oddt-0.7/oddt/__init__.py:50: UserWarning: No toolkit is present. Install OpenBabel or RDKit warnings.warn('No toolkit is present. Install OpenBabel or RDKit') running build running build_py creating build creating build/lib creating build/lib/tests copying tests/test_fingerprints.py -> build/lib/tests copying tests/test_virtualscreening.py -> build/lib/tests copying tests/test_datasets.py -> build/lib/tests copying tests/test_models.py -> build/lib/tests copying tests/test_interactions.py -> build/lib/tests copying tests/test_spatial.py -> build/lib/tests copying tests/test_toolkit.py -> build/lib/tests copying tests/test_scoring.py -> build/lib/tests copying tests/test_utils.py -> build/lib/tests copying tests/test_descriptors.py -> build/lib/tests copying tests/utils.py -> build/lib/tests copying tests/test_surface.py -> build/lib/tests copying tests/test_rdkitfixer.py -> build/lib/tests copying tests/test_metrics.py -> build/lib/tests copying tests/test_pandas.py -> build/lib/tests copying tests/test_shape.py -> build/lib/tests copying tests/__init__.py -> build/lib/tests creating build/lib/oddt copying oddt/utils.py -> build/lib/oddt copying oddt/spatial.py -> build/lib/oddt copying oddt/surface.py -> build/lib/oddt copying oddt/virtualscreening.py -> build/lib/oddt copying oddt/shape.py -> build/lib/oddt copying oddt/datasets.py -> build/lib/oddt copying oddt/fingerprints.py -> build/lib/oddt copying oddt/metrics.py -> build/lib/oddt copying oddt/pandas.py -> build/lib/oddt copying oddt/__init__.py -> build/lib/oddt copying oddt/interactions.py -> build/lib/oddt creating build/lib/oddt/toolkits copying oddt/toolkits/__init__.py -> build/lib/oddt/toolkits copying oddt/toolkits/ob.py -> build/lib/oddt/toolkits copying oddt/toolkits/rdk.py -> build/lib/oddt/toolkits copying oddt/toolkits/common.py -> build/lib/oddt/toolkits creating build/lib/oddt/scoring copying oddt/scoring/__init__.py -> build/lib/oddt/scoring creating build/lib/oddt/docking copying oddt/docking/__init__.py -> build/lib/oddt/docking copying oddt/docking/internal.py -> build/lib/oddt/docking copying oddt/docking/AutodockVina.py -> build/lib/oddt/docking creating build/lib/oddt/toolkits/extras copying oddt/toolkits/extras/__init__.py -> build/lib/oddt/toolkits/extras creating build/lib/oddt/toolkits/extras/rdkit copying oddt/toolkits/extras/rdkit/__init__.py -> build/lib/oddt/toolkits/extras/rdkit copying oddt/toolkits/extras/rdkit/fixer.py -> build/lib/oddt/toolkits/extras/rdkit creating build/lib/oddt/scoring/models copying oddt/scoring/models/regressors.py -> build/lib/oddt/scoring/models copying oddt/scoring/models/classifiers.py -> build/lib/oddt/scoring/models copying oddt/scoring/models/__init__.py -> build/lib/oddt/scoring/models creating build/lib/oddt/scoring/descriptors copying oddt/scoring/descriptors/binana.py -> build/lib/oddt/scoring/descriptors copying oddt/scoring/descriptors/__init__.py -> build/lib/oddt/scoring/descriptors creating build/lib/oddt/scoring/functions copying oddt/scoring/functions/__init__.py -> build/lib/oddt/scoring/functions copying oddt/scoring/functions/RFScore.py -> build/lib/oddt/scoring/functions copying oddt/scoring/functions/NNScore.py -> build/lib/oddt/scoring/functions copying oddt/scoring/functions/PLECscore.py -> build/lib/oddt/scoring/functions copying oddt/toolkits/extras/pdb_residue_templates.smi -> build/lib/oddt/toolkits/extras creating build/lib/oddt/scoring/functions/NNScore copying oddt/scoring/functions/NNScore/nnscore_descs.csv -> build/lib/oddt/scoring/functions/NNScore creating build/lib/oddt/scoring/functions/RFScore copying oddt/scoring/functions/RFScore/rfscore_descs_v3.csv -> build/lib/oddt/scoring/functions/RFScore copying oddt/scoring/functions/RFScore/rfscore_descs_v2.csv -> build/lib/oddt/scoring/functions/RFScore copying oddt/scoring/functions/RFScore/rfscore_descs_v1.csv -> build/lib/oddt/scoring/functions/RFScore creating build/lib/oddt/scoring/functions/PLECscore copying oddt/scoring/functions/PLECscore/plecscore_linear_p5_l1_s65536_pdbbind2016.json -> build/lib/oddt/scoring/functions/PLECscore running build_scripts creating build/scripts-3.7 copying and adjusting bin/oddt_cli -> build/scripts-3.7 changing mode of build/scripts-3.7/oddt_cli from 644 to 755 SUCCEEDED 00:00:04 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> py37-oddt-0.7 depends on package: py37-numpy>=1.16,1<1.20,1 - found ===> py37-oddt-0.7 depends on package: py37-joblib>=0.9.4 - found ===> py37-oddt-0.7 depends on package: py37-pandas>=0.19.2 - found ===> py37-oddt-0.7 depends on package: py37-scikit-learn>=0.18 - found ===> py37-oddt-0.7 depends on package: py37-scipy>=0.17 - found ===> py37-oddt-0.7 depends on package: py37-six>0 - found ===> py37-oddt-0.7 depends on package: py37-setuptools>0 - found ===> py37-oddt-0.7 depends on file: /usr/local/bin/python3.7 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for py37-oddt-0.7 ===> py37-oddt-0.7 depends on package: py37-numpy>=1.16,1<1.20,1 - found ===> py37-oddt-0.7 depends on package: py37-joblib>=0.9.4 - found ===> py37-oddt-0.7 depends on package: py37-pandas>=0.19.2 - found ===> py37-oddt-0.7 depends on package: py37-scikit-learn>=0.18 - found ===> py37-oddt-0.7 depends on package: py37-scipy>=0.17 - found ===> py37-oddt-0.7 depends on package: py37-six>0 - found ===> py37-oddt-0.7 depends on package: py37-setuptools>0 - found ===> py37-oddt-0.7 depends on file: /usr/local/bin/python3.7 - found ===> Generating temporary packing list /construction/science/py-oddt/oddt-0.7/oddt/__init__.py:50: UserWarning: No toolkit is present. Install OpenBabel or RDKit warnings.warn('No toolkit is present. Install OpenBabel or RDKit') running install running build running build_py running build_scripts running install_lib creating /construction/science/py-oddt/stage/usr/local/lib/python3.7 creating /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages creating /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/tests copying build/lib/tests/test_pandas.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/tests copying build/lib/tests/test_descriptors.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/tests copying build/lib/tests/test_shape.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/tests copying build/lib/tests/test_metrics.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/tests copying build/lib/tests/test_virtualscreening.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/tests copying build/lib/tests/test_models.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/tests copying build/lib/tests/test_rdkitfixer.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/tests copying build/lib/tests/test_fingerprints.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/tests copying build/lib/tests/test_surface.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/tests copying build/lib/tests/test_spatial.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/tests copying build/lib/tests/__init__.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/tests copying build/lib/tests/test_interactions.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/tests copying build/lib/tests/test_datasets.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/tests copying build/lib/tests/test_utils.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/tests copying build/lib/tests/test_toolkit.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/tests copying build/lib/tests/utils.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/tests copying build/lib/tests/test_scoring.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/tests creating /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt copying build/lib/oddt/shape.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt creating /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/scoring creating /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/scoring/functions copying build/lib/oddt/scoring/functions/RFScore.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/scoring/functions copying build/lib/oddt/scoring/functions/PLECscore.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/scoring/functions creating /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/scoring/functions/NNScore copying build/lib/oddt/scoring/functions/NNScore/nnscore_descs.csv -> /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/scoring/functions/NNScore copying build/lib/oddt/scoring/functions/__init__.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/scoring/functions creating /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/scoring/functions/RFScore copying build/lib/oddt/scoring/functions/RFScore/rfscore_descs_v1.csv -> /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/scoring/functions/RFScore copying build/lib/oddt/scoring/functions/RFScore/rfscore_descs_v2.csv -> /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/scoring/functions/RFScore copying build/lib/oddt/scoring/functions/RFScore/rfscore_descs_v3.csv -> /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/scoring/functions/RFScore creating /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/scoring/functions/PLECscore copying build/lib/oddt/scoring/functions/PLECscore/plecscore_linear_p5_l1_s65536_pdbbind2016.json -> /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/scoring/functions/PLECscore copying build/lib/oddt/scoring/functions/NNScore.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/scoring/functions creating /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/scoring/descriptors copying build/lib/oddt/scoring/descriptors/__init__.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/scoring/descriptors copying build/lib/oddt/scoring/descriptors/binana.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/scoring/descriptors creating /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/scoring/models copying build/lib/oddt/scoring/models/__init__.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/scoring/models copying build/lib/oddt/scoring/models/regressors.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/scoring/models copying build/lib/oddt/scoring/models/classifiers.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/scoring/models copying build/lib/oddt/scoring/__init__.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/scoring copying build/lib/oddt/pandas.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt copying build/lib/oddt/spatial.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt copying build/lib/oddt/surface.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt creating /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/toolkits copying build/lib/oddt/toolkits/rdk.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/toolkits copying build/lib/oddt/toolkits/__init__.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/toolkits creating /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/toolkits/extras copying build/lib/oddt/toolkits/extras/pdb_residue_templates.smi -> /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/toolkits/extras creating /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/toolkits/extras/rdkit copying build/lib/oddt/toolkits/extras/rdkit/__init__.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/toolkits/extras/rdkit copying build/lib/oddt/toolkits/extras/rdkit/fixer.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/toolkits/extras/rdkit copying build/lib/oddt/toolkits/extras/__init__.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/toolkits/extras copying build/lib/oddt/toolkits/ob.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/toolkits copying build/lib/oddt/toolkits/common.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/toolkits copying build/lib/oddt/metrics.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt copying build/lib/oddt/__init__.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt copying build/lib/oddt/fingerprints.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt creating /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/docking copying build/lib/oddt/docking/AutodockVina.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/docking copying build/lib/oddt/docking/__init__.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/docking copying build/lib/oddt/docking/internal.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/docking copying build/lib/oddt/datasets.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt copying build/lib/oddt/virtualscreening.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt copying build/lib/oddt/utils.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt copying build/lib/oddt/interactions.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/tests/test_pandas.py to test_pandas.cpython-37.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/tests/test_descriptors.py to test_descriptors.cpython-37.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/tests/test_shape.py to test_shape.cpython-37.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/tests/test_metrics.py to test_metrics.cpython-37.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/tests/test_virtualscreening.py to test_virtualscreening.cpython-37.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/tests/test_models.py to test_models.cpython-37.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/tests/test_rdkitfixer.py to test_rdkitfixer.cpython-37.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/tests/test_fingerprints.py to test_fingerprints.cpython-37.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/tests/test_surface.py to test_surface.cpython-37.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/tests/test_spatial.py to test_spatial.cpython-37.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/tests/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/tests/test_interactions.py to test_interactions.cpython-37.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/tests/test_datasets.py to test_datasets.cpython-37.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/tests/test_utils.py to test_utils.cpython-37.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/tests/test_toolkit.py to test_toolkit.cpython-37.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/tests/utils.py to utils.cpython-37.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/tests/test_scoring.py to test_scoring.cpython-37.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/shape.py to shape.cpython-37.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/scoring/functions/RFScore.py to RFScore.cpython-37.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/scoring/functions/PLECscore.py to PLECscore.cpython-37.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/scoring/functions/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/scoring/functions/NNScore.py to NNScore.cpython-37.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/scoring/descriptors/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/scoring/descriptors/binana.py to binana.cpython-37.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/scoring/models/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/scoring/models/regressors.py to regressors.cpython-37.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/scoring/models/classifiers.py to classifiers.cpython-37.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/scoring/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/pandas.py to pandas.cpython-37.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/spatial.py to spatial.cpython-37.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/surface.py to surface.cpython-37.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/toolkits/rdk.py to rdk.cpython-37.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/toolkits/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/toolkits/extras/rdkit/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/toolkits/extras/rdkit/fixer.py to fixer.cpython-37.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/toolkits/extras/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/toolkits/ob.py to ob.cpython-37.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/toolkits/common.py to common.cpython-37.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/metrics.py to metrics.cpython-37.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/fingerprints.py to fingerprints.cpython-37.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/docking/AutodockVina.py to AutodockVina.cpython-37.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/docking/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/docking/internal.py to internal.cpython-37.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/datasets.py to datasets.cpython-37.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/virtualscreening.py to virtualscreening.cpython-37.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/utils.py to utils.cpython-37.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt/interactions.py to interactions.cpython-37.pyc writing byte-compilation script '/tmp/tmpq3ca4zn2.py' /usr/local/bin/python3.7 /tmp/tmpq3ca4zn2.py removing /tmp/tmpq3ca4zn2.py running install_egg_info running egg_info creating oddt.egg-info writing oddt.egg-info/PKG-INFO writing dependency_links to oddt.egg-info/dependency_links.txt writing requirements to oddt.egg-info/requires.txt writing top-level names to oddt.egg-info/top_level.txt writing manifest file 'oddt.egg-info/SOURCES.txt' reading manifest file 'oddt.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'oddt.egg-info/SOURCES.txt' Copying oddt.egg-info to /construction/science/py-oddt/stage/usr/local/lib/python3.7/site-packages/oddt-0.7-py3.7.egg-info running install_scripts copying build/scripts-3.7/oddt_cli -> /construction/science/py-oddt/stage/usr/local/bin changing mode of /construction/science/py-oddt/stage/usr/local/bin/oddt_cli to 755 writing list of installed files to '/construction/science/py-oddt/.PLIST.pymodtmp' ===> Creating unique files: Move MAN files needing SUFFIX ===> Creating unique files: Move files needing SUFFIX Move: bin/oddt_cli --> bin/oddt_cli-3.7 Link: @bin/oddt_cli --> bin/oddt_cli-3.7 ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:05 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- ====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for py37-oddt-0.7 file sizes/checksums [157]: 0% file sizes/checksums [157]: 63% file sizes/checksums [157]: 100% packing files [157]: 0% packing files [157]: 63% packing files [157]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:14 TOTAL TIME 00:01:21