------------------------------------------------------------------------------- -- Phase: Environment ------------------------------------------------------------------------------- NO_DEPENDS=1 FLAVOR=py37 UNAME_r=5.9 UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=unknown UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 LANG=C HOME=/root USER=root TERM=dumb SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: showconfig ------------------------------------------------------------------------------- SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ENV ------------------------------------------------------------------------------- PYTHON="/usr/local/bin/python3.7" XDG_DATA_HOME=/construction/science/py-kliff XDG_CONFIG_HOME=/construction/science/py-kliff HOME=/construction/science/py-kliff TMPDIR="/tmp" PATH=/construction/science/py-kliff/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ARGS ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ENV ------------------------------------------------------------------------------- XDG_DATA_HOME=/construction/science/py-kliff XDG_CONFIG_HOME=/construction/science/py-kliff HOME=/construction/science/py-kliff TMPDIR="/tmp" PATH=/construction/science/py-kliff/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ARGS ------------------------------------------------------------------------------- DESTDIR=/construction/science/py-kliff/stage SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: PLIST_SUB ------------------------------------------------------------------------------- PYTHON_INCLUDEDIR=include/python3.7m PYTHON_LIBDIR=lib/python3.7 PYTHON_PLATFORM=dragonfly5 PYTHON_SITELIBDIR=lib/python3.7/site-packages PYTHON_SUFFIX=37 PYTHON_EXT_SUFFIX= PYTHON_VER=3.7 PYTHON_VERSION=python3.7 PYTHON2="@comment " PYTHON3="" OSREL=5.9 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/kliff" EXAMPLESDIR="share/examples/kliff" DATADIR="share/kliff" WWWDIR="www/kliff" ETCDIR="etc/kliff" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: SUB_LIST ------------------------------------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/kliff DOCSDIR=/usr/local/share/doc/kliff EXAMPLESDIR=/usr/local/share/examples/kliff WWWDIR=/usr/local/www/kliff ETCDIR=/usr/local/etc/kliff SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: /etc/make.conf ------------------------------------------------------------------------------- DPORTS_BUILDER=yes DISABLE_LICENSES=yes DEFAULT_VERSIONS=ssl=openssl FORCE_PACKAGE=yes DEVELOPER=yes USE_PACKAGE_DEPENDS_ONLY=yes PORTSDIR=/xports PORT_DBDIR=/options PKG_DBDIR=/var/db/pkg PKG_CACHEDIR=/var/cache/pkg PKG_SUFX=.txz DEVELOPER=1 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500906 OSVERSION=9999999 OSREL=5.9 _OSRELEASE=5.9-SYNTH DISTDIR=/distfiles WRKDIRPREFIX=/construction BATCH=yes PACKAGE_BUILDING=yes PKG_CREATE_VERBOSE=yes MAKE_JOBS_NUMBER=10 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/libffi-3.3_1.txz Installing /packages/All/expat-2.2.10.txz Installing /packages/All/ncurses-6.2.20210116.txz Installing /packages/All/readline-8.0.4_1.txz Installing /packages/All/gettext-runtime-0.21.txz Installing /packages/All/openssl-1.1.1i,1.txz Installing /packages/All/python37-3.7.9_1.txz ===== Message from python37-3.7.9_1: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py37-gdbm databases/py-gdbm@py37 py37-sqlite3 databases/py-sqlite3@py37 py37-tkinter x11-toolkits/py-tkinter@py37 Installing /packages/All/py37-setuptools-44.0.0.txz Installing /packages/All/py37-pybind11-2.6.1_1.txz Installing /packages/All/py37-atomicwrites-1.4.0.txz Installing /packages/All/py37-attrs-20.3.0.txz Installing /packages/All/py37-zipp-3.4.0.txz Installing /packages/All/py37-typing-extensions-3.7.4.3.txz Installing /packages/All/py37-importlib-metadata-3.3.0_1.txz Installing /packages/All/py37-pluggy-0.13.1.txz Installing /packages/All/py37-py-1.9.0.txz Installing /packages/All/py37-six-1.15.0.txz Installing /packages/All/py37-wcwidth-0.1.8.txz Installing /packages/All/py37-more-itertools-8.6.0.txz Installing /packages/All/py37-pytest-4.5.0.txz Installing /packages/All/gmp-6.2.1.txz Installing /packages/All/mpfr-4.1.0.txz Installing /packages/All/mpc-1.1.0_2.txz UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/binutils-2.33.1_4,1.txz Installing /packages/All/gcc8-8.4.0.txz ===== Message from gcc8-8.4.0: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/blas-3.5.0_6.txz Installing /packages/All/metis-5.1.0_8.txz ===== Message from metis-5.1.0_8: -- ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Installing /packages/All/tbb-2020.3_1.txz Installing /packages/All/openblas-0.3.12,1.txz Installing /packages/All/suitesparse-5.8.1.txz Installing /packages/All/py37-numpy-1.16.6,1.txz Installing /packages/All/py37-scipy-1.5.4_1.txz UNFLAVORED devel/binutils -> use devel/binutils@native SUCCEEDED 00:01:20 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> py37-kliff-0.1.7 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> py37-kliff-0.1.7 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py37-kliff-0.1.7 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> py37-kliff-0.1.7 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py37-kliff-0.1.7 for building => SHA256 Checksum OK for kliff-0.1.7.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> py37-kliff-0.1.7 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py37-kliff-0.1.7 for building ===> Extracting for py37-kliff-0.1.7 => SHA256 Checksum OK for kliff-0.1.7.tar.gz. Extracted Memory Use: 3.66M SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for py37-kliff-0.1.7 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> py37-kliff-0.1.7 depends on package: py37-pybind11>0 - found ===> py37-kliff-0.1.7 depends on package: py37-setuptools>0 - found ===> py37-kliff-0.1.7 depends on file: /usr/local/bin/python3.7 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> py37-kliff-0.1.7 depends on package: py37-pybind11>0 - found ===> py37-kliff-0.1.7 depends on package: py37-setuptools>0 - found ===> py37-kliff-0.1.7 depends on file: /usr/local/bin/python3.7 - found ===> Configuring for py37-kliff-0.1.7 running config SUCCEEDED 00:00:03 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for py37-kliff-0.1.7 running build running build_py creating build creating build/lib.dragonfly-5.9-x86_64-3.7 creating build/lib.dragonfly-5.9-x86_64-3.7/kliff copying kliff/atomic_data.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff copying kliff/log.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff copying kliff/nn.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff copying kliff/loss.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff copying kliff/error.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff copying kliff/utils.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff copying kliff/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff copying kliff/parallel.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff copying kliff/wrapcalculator.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff creating build/lib.dragonfly-5.9-x86_64-3.7/kliff/descriptors copying kliff/descriptors/descriptor.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff/descriptors copying kliff/descriptors/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff/descriptors creating build/lib.dragonfly-5.9-x86_64-3.7/kliff/neighbor copying kliff/neighbor/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff/neighbor copying kliff/neighbor/neighbor.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff/neighbor creating build/lib.dragonfly-5.9-x86_64-3.7/kliff/models copying kliff/models/kim.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff/models copying kliff/models/lennard_jones.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff/models copying kliff/models/neural_network.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff/models copying kliff/models/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff/models copying kliff/models/parameter.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff/models copying kliff/models/model_torch.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff/models copying kliff/models/model.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff/models copying kliff/models/linear_regression.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff/models creating build/lib.dragonfly-5.9-x86_64-3.7/kliff/dataset copying kliff/dataset/extxyz.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff/dataset copying kliff/dataset/dataset.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff/dataset copying kliff/dataset/dataset_torch.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff/dataset copying kliff/dataset/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff/dataset creating build/lib.dragonfly-5.9-x86_64-3.7/kliff/cmdline copying kliff/cmdline/model.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff/cmdline copying kliff/cmdline/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff/cmdline copying kliff/cmdline/dataset.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff/cmdline creating build/lib.dragonfly-5.9-x86_64-3.7/kliff/calculators copying kliff/calculators/calculator.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff/calculators copying kliff/calculators/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff/calculators copying kliff/calculators/calculator_torch.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff/calculators creating build/lib.dragonfly-5.9-x86_64-3.7/kliff/analyzers copying kliff/analyzers/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff/analyzers copying kliff/analyzers/rmse.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff/analyzers copying kliff/analyzers/fisher.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff/analyzers creating build/lib.dragonfly-5.9-x86_64-3.7/kliff/descriptors/bispectrum copying kliff/descriptors/bispectrum/bispectrum.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff/descriptors/bispectrum copying kliff/descriptors/bispectrum/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff/descriptors/bispectrum creating build/lib.dragonfly-5.9-x86_64-3.7/kliff/descriptors/symmetry_function copying kliff/descriptors/symmetry_function/sym_fn.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff/descriptors/symmetry_function copying kliff/descriptors/symmetry_function/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff/descriptors/symmetry_function running build_ext building 'kliff.descriptors.symmetry_function.sf' extension creating build/temp.dragonfly-5.9-x86_64-3.7 creating build/temp.dragonfly-5.9-x86_64-3.7/kliff creating build/temp.dragonfly-5.9-x86_64-3.7/kliff/descriptors creating build/temp.dragonfly-5.9-x86_64-3.7/kliff/descriptors/symmetry_function cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.7/site-packages/pybind11/include -I/usr/local/lib/python3.7/site-packages/pybind11/include -I/usr/local/include/python3.7m -c kliff/descriptors/symmetry_function/sym_fn_bind.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/kliff/descriptors/symmetry_function/sym_fn_bind.o -std=c++11 cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.7/site-packages/pybind11/include -I/usr/local/lib/python3.7/site-packages/pybind11/include -I/usr/local/include/python3.7m -c kliff/descriptors/symmetry_function/sym_fn.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/kliff/descriptors/symmetry_function/sym_fn.o -std=c++11 In file included from kliff/descriptors/symmetry_function/sym_fn.hpp:4, from kliff/descriptors/symmetry_function/sym_fn.cpp:1: kliff/descriptors/symmetry_function/helper.hpp: In instantiation of 'void _Array_Basic::_range_check(int, std::size_t) const [with DataType = double; std::size_t = long unsigned int]': kliff/descriptors/symmetry_function/helper.hpp:1199:3: required from 'DataType& Array2D::at(int, int) [with DataType = double]' kliff/descriptors/symmetry_function/sym_fn.cpp:955:43: required from here kliff/descriptors/symmetry_function/helper.hpp:849:10: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long unsigned int'} [-Wsign-compare] if (_n >= tsize) ~~~^~~~~~~~ cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.7/site-packages/pybind11/include -I/usr/local/lib/python3.7/site-packages/pybind11/include -I/usr/local/include/python3.7m -c kliff/descriptors/symmetry_function/helper.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/kliff/descriptors/symmetry_function/helper.o -std=c++11 c++ -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.9-x86_64-3.7/kliff/descriptors/symmetry_function/sym_fn_bind.o build/temp.dragonfly-5.9-x86_64-3.7/kliff/descriptors/symmetry_function/sym_fn.o build/temp.dragonfly-5.9-x86_64-3.7/kliff/descriptors/symmetry_function/helper.o -L/usr/local/lib -lpython3.7m -o build/lib.dragonfly-5.9-x86_64-3.7/kliff/descriptors/symmetry_function/sf.so building 'kliff.descriptors.bispectrum.bs' extension creating build/temp.dragonfly-5.9-x86_64-3.7/kliff/descriptors/bispectrum cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.7/site-packages/pybind11/include -I/usr/local/lib/python3.7/site-packages/pybind11/include -I/usr/local/include/python3.7m -c kliff/descriptors/bispectrum/bispectrum_bind.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/kliff/descriptors/bispectrum/bispectrum_bind.o -std=c++11 cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.7/site-packages/pybind11/include -I/usr/local/lib/python3.7/site-packages/pybind11/include -I/usr/local/include/python3.7m -c kliff/descriptors/bispectrum/bispectrum.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/kliff/descriptors/bispectrum/bispectrum.o -std=c++11 cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.7/site-packages/pybind11/include -I/usr/local/lib/python3.7/site-packages/pybind11/include -I/usr/local/include/python3.7m -c kliff/descriptors/bispectrum/helper.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/kliff/descriptors/bispectrum/helper.o -std=c++11 c++ -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.9-x86_64-3.7/kliff/descriptors/bispectrum/bispectrum_bind.o build/temp.dragonfly-5.9-x86_64-3.7/kliff/descriptors/bispectrum/bispectrum.o build/temp.dragonfly-5.9-x86_64-3.7/kliff/descriptors/bispectrum/helper.o -L/usr/local/lib -lpython3.7m -o build/lib.dragonfly-5.9-x86_64-3.7/kliff/descriptors/bispectrum/bs.so building 'kliff.neighbor.nl' extension creating build/temp.dragonfly-5.9-x86_64-3.7/kliff/neighbor cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.7/site-packages/pybind11/include -I/usr/local/lib/python3.7/site-packages/pybind11/include -I/usr/local/include/python3.7m -c kliff/neighbor/neighbor_list.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/kliff/neighbor/neighbor_list.o -std=c++11 cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.7/site-packages/pybind11/include -I/usr/local/lib/python3.7/site-packages/pybind11/include -I/usr/local/include/python3.7m -c kliff/neighbor/neighbor_list_bind.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/kliff/neighbor/neighbor_list_bind.o -std=c++11 c++ -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.9-x86_64-3.7/kliff/neighbor/neighbor_list.o build/temp.dragonfly-5.9-x86_64-3.7/kliff/neighbor/neighbor_list_bind.o -L/usr/local/lib -lpython3.7m -o build/lib.dragonfly-5.9-x86_64-3.7/kliff/neighbor/nl.so running build_scripts creating build/scripts-3.7 copying and adjusting bin/kliff -> build/scripts-3.7 changing mode of build/scripts-3.7/kliff from 644 to 755 SUCCEEDED 00:01:46 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> py37-kliff-0.1.7 depends on package: py37-pybind11>0 - found ===> py37-kliff-0.1.7 depends on package: py37-pytest>0 - found ===> py37-kliff-0.1.7 depends on package: py37-scipy>0 - found ===> py37-kliff-0.1.7 depends on package: py37-setuptools>0 - found ===> py37-kliff-0.1.7 depends on file: /usr/local/bin/python3.7 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for py37-kliff-0.1.7 ===> py37-kliff-0.1.7 depends on package: py37-pybind11>0 - found ===> py37-kliff-0.1.7 depends on package: py37-pytest>0 - found ===> py37-kliff-0.1.7 depends on package: py37-scipy>0 - found ===> py37-kliff-0.1.7 depends on package: py37-setuptools>0 - found ===> py37-kliff-0.1.7 depends on file: /usr/local/bin/python3.7 - found ===> Generating temporary packing list running install running build running build_py running build_ext running build_scripts running install_lib creating /construction/science/py-kliff/stage/usr/local/lib/python3.7 creating /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages creating /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff creating /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/analyzers copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/analyzers/rmse.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/analyzers copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/analyzers/fisher.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/analyzers copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/analyzers/__init__.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/analyzers creating /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/neighbor copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/neighbor/__init__.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/neighbor copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/neighbor/neighbor.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/neighbor copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/neighbor/nl.so -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/neighbor copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/parallel.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/loss.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/nn.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff creating /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/models copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/models/kim.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/models copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/models/model_torch.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/models copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/models/neural_network.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/models copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/models/parameter.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/models copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/models/lennard_jones.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/models copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/models/__init__.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/models copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/models/linear_regression.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/models copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/models/model.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/models creating /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/calculators copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/calculators/calculator_torch.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/calculators copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/calculators/__init__.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/calculators copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/calculators/calculator.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/calculators creating /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/descriptors copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/descriptors/descriptor.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/descriptors creating /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/descriptors/bispectrum copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/descriptors/bispectrum/bispectrum.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/descriptors/bispectrum copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/descriptors/bispectrum/__init__.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/descriptors/bispectrum copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/descriptors/bispectrum/bs.so -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/descriptors/bispectrum copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/descriptors/__init__.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/descriptors creating /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/descriptors/symmetry_function copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/descriptors/symmetry_function/sym_fn.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/descriptors/symmetry_function copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/descriptors/symmetry_function/__init__.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/descriptors/symmetry_function copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/descriptors/symmetry_function/sf.so -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/descriptors/symmetry_function copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/wrapcalculator.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff creating /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/cmdline copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/cmdline/model.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/cmdline copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/cmdline/dataset.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/cmdline copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/cmdline/__init__.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/cmdline copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/error.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/log.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/atomic_data.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/__init__.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/utils.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff creating /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/dataset copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/dataset/__init__.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/dataset copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/dataset/dataset.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/dataset copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/dataset/dataset_torch.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/dataset copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/dataset/extxyz.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/dataset byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/analyzers/rmse.py to rmse.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/analyzers/fisher.py to fisher.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/analyzers/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/neighbor/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/neighbor/neighbor.py to neighbor.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/parallel.py to parallel.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/loss.py to loss.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/nn.py to nn.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/models/kim.py to kim.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/models/model_torch.py to model_torch.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/models/neural_network.py to neural_network.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/models/parameter.py to parameter.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/models/lennard_jones.py to lennard_jones.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/models/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/models/linear_regression.py to linear_regression.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/models/model.py to model.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/calculators/calculator_torch.py to calculator_torch.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/calculators/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/calculators/calculator.py to calculator.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/descriptors/descriptor.py to descriptor.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/descriptors/bispectrum/bispectrum.py to bispectrum.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/descriptors/bispectrum/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/descriptors/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/descriptors/symmetry_function/sym_fn.py to sym_fn.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/descriptors/symmetry_function/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/wrapcalculator.py to wrapcalculator.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/cmdline/model.py to model.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/cmdline/dataset.py to dataset.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/cmdline/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/error.py to error.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/log.py to log.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/atomic_data.py to atomic_data.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/utils.py to utils.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/dataset/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/dataset/dataset.py to dataset.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/dataset/dataset_torch.py to dataset_torch.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/dataset/extxyz.py to extxyz.cpython-37.pyc writing byte-compilation script '/tmp/tmpky9sghgr.py' /usr/local/bin/python3.7 /tmp/tmpky9sghgr.py removing /tmp/tmpky9sghgr.py running install_egg_info running egg_info writing kliff.egg-info/PKG-INFO writing dependency_links to kliff.egg-info/dependency_links.txt writing requirements to kliff.egg-info/requires.txt writing top-level names to kliff.egg-info/top_level.txt reading manifest file 'kliff.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' no previously-included directories found matching 'docs/build' warning: no previously-included files matching '.DS_Store' found anywhere in distribution warning: no previously-included files matching 'tmp_*' found anywhere in distribution writing manifest file 'kliff.egg-info/SOURCES.txt' Copying kliff.egg-info to /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff-0.1.7-py3.7.egg-info running install_scripts copying build/scripts-3.7/kliff -> /construction/science/py-kliff/stage/usr/local/bin changing mode of /construction/science/py-kliff/stage/usr/local/bin/kliff to 755 writing list of installed files to '/construction/science/py-kliff/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Error: /usr/local/lib/python3.7/site-packages/kliff/descriptors/bispectrum/bs.so is linked to /usr/local/lib/libintl.so.8 from devel/gettext-runtime but it is not declared as a dependency Warning: you need USES+=gettext-runtime Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:06 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- ====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for py37-kliff-0.1.7 file sizes/checksums [124]: 0% file sizes/checksums [124]: 80% file sizes/checksums [124]: 100% packing files [124]: 0% packing files [124]: 80% packing files [124]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:02 TOTAL TIME 00:03:21