------------------------------------------------------------------------------- -- Phase: Environment ------------------------------------------------------------------------------- NO_DEPENDS=1 FLAVOR=py37 UNAME_r=5.9 UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=unknown UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 LANG=C HOME=/root USER=root TERM=dumb SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: showconfig ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ENV ------------------------------------------------------------------------------- PYTHON="/usr/local/bin/python3.7" XDG_DATA_HOME=/construction/science/py-gsd XDG_CONFIG_HOME=/construction/science/py-gsd HOME=/construction/science/py-gsd TMPDIR="/tmp" PATH=/construction/science/py-gsd/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ARGS ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ENV ------------------------------------------------------------------------------- XDG_DATA_HOME=/construction/science/py-gsd XDG_CONFIG_HOME=/construction/science/py-gsd HOME=/construction/science/py-gsd TMPDIR="/tmp" PATH=/construction/science/py-gsd/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ARGS ------------------------------------------------------------------------------- DESTDIR=/construction/science/py-gsd/stage SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: PLIST_SUB ------------------------------------------------------------------------------- PYTHON_INCLUDEDIR=include/python3.7m PYTHON_LIBDIR=lib/python3.7 PYTHON_PLATFORM=dragonfly5 PYTHON_SITELIBDIR=lib/python3.7/site-packages PYTHON_SUFFIX=37 PYTHON_EXT_SUFFIX= PYTHON_VER=3.7 PYTHON_VERSION=python3.7 PYTHON2="@comment " PYTHON3="" OSREL=5.9 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/gsd" EXAMPLESDIR="share/examples/gsd" DATADIR="share/gsd" WWWDIR="www/gsd" ETCDIR="etc/gsd" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: SUB_LIST ------------------------------------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/gsd DOCSDIR=/usr/local/share/doc/gsd EXAMPLESDIR=/usr/local/share/examples/gsd WWWDIR=/usr/local/www/gsd ETCDIR=/usr/local/etc/gsd SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: /etc/make.conf ------------------------------------------------------------------------------- DPORTS_BUILDER=yes DISABLE_LICENSES=yes DEFAULT_VERSIONS=ssl=openssl FORCE_PACKAGE=yes DEVELOPER=yes USE_PACKAGE_DEPENDS_ONLY=yes PORTSDIR=/xports PORT_DBDIR=/options PKG_DBDIR=/var/db/pkg PKG_CACHEDIR=/var/cache/pkg PKG_SUFX=.txz DEVELOPER=1 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500906 OSVERSION=9999999 OSREL=5.9 _OSRELEASE=5.9-SYNTH DISTDIR=/distfiles WRKDIRPREFIX=/construction BATCH=yes PACKAGE_BUILDING=yes PKG_CREATE_VERBOSE=yes MAKE_JOBS_NUMBER=10 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/gmp-6.2.1.txz Installing /packages/All/mpfr-4.1.0.txz Installing /packages/All/metis-5.1.0_8.txz ===== Message from metis-5.1.0_8: -- ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Installing /packages/All/tbb-2020.3_1.txz Installing /packages/All/mpc-1.1.0_2.txz UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/gettext-runtime-0.21.txz Installing /packages/All/binutils-2.33.1_4,1.txz Installing /packages/All/gcc8-8.4.0.txz ===== Message from gcc8-8.4.0: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/openblas-0.3.12,1.txz Installing /packages/All/suitesparse-5.8.1.txz Installing /packages/All/libffi-3.3_1.txz Installing /packages/All/expat-2.2.10.txz Installing /packages/All/ncurses-6.2.20210116.txz Installing /packages/All/readline-8.0.4_1.txz Installing /packages/All/openssl-1.1.1i,1.txz Installing /packages/All/python37-3.7.9_1.txz ===== Message from python37-3.7.9_1: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py37-gdbm databases/py-gdbm@py37 py37-sqlite3 databases/py-sqlite3@py37 py37-tkinter x11-toolkits/py-tkinter@py37 Installing /packages/All/py37-setuptools-44.0.0.txz Installing /packages/All/py37-numpy-1.16.6,1.txz Installing /packages/All/py37-cython-0.29.21.txz UNFLAVORED devel/binutils -> use devel/binutils@native SUCCEEDED 00:01:10 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> py37-gsd-2.4.0 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> py37-gsd-2.4.0 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py37-gsd-2.4.0 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> py37-gsd-2.4.0 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py37-gsd-2.4.0 for building => SHA256 Checksum OK for gsd-2.4.0.tar.gz. SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> py37-gsd-2.4.0 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py37-gsd-2.4.0 for building ===> Extracting for py37-gsd-2.4.0 => SHA256 Checksum OK for gsd-2.4.0.tar.gz. Extracted Memory Use: 1.05M SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for py37-gsd-2.4.0 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> py37-gsd-2.4.0 depends on package: py37-numpy>=1.16,1<1.20,1 - found ===> py37-gsd-2.4.0 depends on executable: cython-3.7 - found ===> py37-gsd-2.4.0 depends on package: py37-setuptools>0 - found ===> py37-gsd-2.4.0 depends on file: /usr/local/bin/python3.7 - found SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> py37-gsd-2.4.0 depends on package: py37-numpy>=1.16,1<1.20,1 - found ===> py37-gsd-2.4.0 depends on executable: cython-3.7 - found ===> py37-gsd-2.4.0 depends on package: py37-setuptools>0 - found ===> py37-gsd-2.4.0 depends on file: /usr/local/bin/python3.7 - found ===> Configuring for py37-gsd-2.4.0 running config SUCCEEDED 00:00:02 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for py37-gsd-2.4.0 running build running build_py creating build creating build/lib.dragonfly-5.9-x86_64-3.7 creating build/lib.dragonfly-5.9-x86_64-3.7/gsd copying gsd/version.py -> build/lib.dragonfly-5.9-x86_64-3.7/gsd copying gsd/__main__.py -> build/lib.dragonfly-5.9-x86_64-3.7/gsd copying gsd/hoomd.py -> build/lib.dragonfly-5.9-x86_64-3.7/gsd copying gsd/pygsd.py -> build/lib.dragonfly-5.9-x86_64-3.7/gsd copying gsd/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/gsd package init file 'gsd/test/__init__.py' not found (or not a regular file) creating build/lib.dragonfly-5.9-x86_64-3.7/gsd/test copying gsd/test/test_largefile.py -> build/lib.dragonfly-5.9-x86_64-3.7/gsd/test copying gsd/test/test_fl.py -> build/lib.dragonfly-5.9-x86_64-3.7/gsd/test copying gsd/test/conftest.py -> build/lib.dragonfly-5.9-x86_64-3.7/gsd/test copying gsd/test/test_hoomd.py -> build/lib.dragonfly-5.9-x86_64-3.7/gsd/test copying gsd/test/test_gsd_v1.gsd -> build/lib.dragonfly-5.9-x86_64-3.7/gsd/test running build_ext building 'gsd.fl' extension creating build/temp.dragonfly-5.9-x86_64-3.7 creating build/temp.dragonfly-5.9-x86_64-3.7/gsd cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I./gsd -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include/python3.7m -c gsd/fl.c -o build/temp.dragonfly-5.9-x86_64-3.7/gsd/fl.o cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I./gsd -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include/python3.7m -c gsd/gsd.c -o build/temp.dragonfly-5.9-x86_64-3.7/gsd/gsd.o gsd/gsd.c: In function 'gsd_expand_file_index': gsd/gsd.c:982:44: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] if (bytes_read == -1 || bytes_read != bytes_to_copy) ^~ gsd/gsd.c:993:50: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] if (bytes_written == -1 || bytes_written != bytes_to_copy) ^~ gsd/gsd.c:1019:50: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] if (bytes_written == -1 || bytes_written != bytes_to_copy) ^~ gsd/gsd.c: In function 'gsd_flush_write_buffer': gsd/gsd.c:1107:46: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] if (bytes_written == -1 || bytes_written != handle->write_buffer.size) ^~ gsd/gsd.c: In function 'gsd_flush_name_buffer': gsd/gsd.c:1199:50: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] if (bytes_written == -1 || bytes_written != handle->file_names.data.reserved) ^~ gsd/gsd.c:1232:27: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] if (bytes_written != (handle->file_names.data.reserved - old_size)) ^~ gsd/gsd.c: In function 'gsd_initialize_handle': gsd/gsd.c:1468:40: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] if (bytes_read == -1 || bytes_read != namelist_n_bytes) ^~ gsd/gsd.c: In function 'gsd_end_frame': gsd/gsd.c:1894:50: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] if (bytes_written == -1 || bytes_written != bytes_to_write) ^~ gsd/gsd.c: In function 'gsd_write_chunk': gsd/gsd.c:2017:50: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] if (bytes_written == -1 || bytes_written != size) ^~ gsd/gsd.c: In function 'gsd_read_chunk': gsd/gsd.c:2169:40: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] if (bytes_read == -1 || bytes_read != size) ^~ gsd/gsd.c: In function 'gsd_upgrade': gsd/gsd.c:2345:54: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'long unsigned int' [-Wsign-compare] if (bytes_written == -1 || bytes_written != sizeof(struct gsd_index_entry) * buf.size) ^~ gsd/gsd.c:2400:54: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] if (bytes_written == -1 || bytes_written != new_name_buf.reserved) ^~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.9-x86_64-3.7/gsd/fl.o build/temp.dragonfly-5.9-x86_64-3.7/gsd/gsd.o -L/usr/local/lib -lpython3.7m -o build/lib.dragonfly-5.9-x86_64-3.7/gsd/fl.so SUCCEEDED 00:00:11 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> py37-gsd-2.4.0 depends on package: py37-numpy>=1.16,1<1.20,1 - found ===> py37-gsd-2.4.0 depends on package: py37-setuptools>0 - found ===> py37-gsd-2.4.0 depends on file: /usr/local/bin/python3.7 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for py37-gsd-2.4.0 ===> py37-gsd-2.4.0 depends on package: py37-numpy>=1.16,1<1.20,1 - found ===> py37-gsd-2.4.0 depends on package: py37-setuptools>0 - found ===> py37-gsd-2.4.0 depends on file: /usr/local/bin/python3.7 - found ===> Generating temporary packing list running install running build running build_py package init file 'gsd/test/__init__.py' not found (or not a regular file) running build_ext running install_lib creating /construction/science/py-gsd/stage/usr/local/lib/python3.7 creating /construction/science/py-gsd/stage/usr/local/lib/python3.7/site-packages creating /construction/science/py-gsd/stage/usr/local/lib/python3.7/site-packages/gsd copying build/lib.dragonfly-5.9-x86_64-3.7/gsd/__main__.py -> /construction/science/py-gsd/stage/usr/local/lib/python3.7/site-packages/gsd creating /construction/science/py-gsd/stage/usr/local/lib/python3.7/site-packages/gsd/test copying build/lib.dragonfly-5.9-x86_64-3.7/gsd/test/test_largefile.py -> /construction/science/py-gsd/stage/usr/local/lib/python3.7/site-packages/gsd/test copying build/lib.dragonfly-5.9-x86_64-3.7/gsd/test/test_gsd_v1.gsd -> /construction/science/py-gsd/stage/usr/local/lib/python3.7/site-packages/gsd/test copying build/lib.dragonfly-5.9-x86_64-3.7/gsd/test/conftest.py -> /construction/science/py-gsd/stage/usr/local/lib/python3.7/site-packages/gsd/test copying build/lib.dragonfly-5.9-x86_64-3.7/gsd/test/test_hoomd.py -> /construction/science/py-gsd/stage/usr/local/lib/python3.7/site-packages/gsd/test copying build/lib.dragonfly-5.9-x86_64-3.7/gsd/test/test_fl.py -> /construction/science/py-gsd/stage/usr/local/lib/python3.7/site-packages/gsd/test copying build/lib.dragonfly-5.9-x86_64-3.7/gsd/pygsd.py -> /construction/science/py-gsd/stage/usr/local/lib/python3.7/site-packages/gsd copying build/lib.dragonfly-5.9-x86_64-3.7/gsd/version.py -> /construction/science/py-gsd/stage/usr/local/lib/python3.7/site-packages/gsd copying build/lib.dragonfly-5.9-x86_64-3.7/gsd/__init__.py -> /construction/science/py-gsd/stage/usr/local/lib/python3.7/site-packages/gsd copying build/lib.dragonfly-5.9-x86_64-3.7/gsd/hoomd.py -> /construction/science/py-gsd/stage/usr/local/lib/python3.7/site-packages/gsd copying build/lib.dragonfly-5.9-x86_64-3.7/gsd/fl.so -> /construction/science/py-gsd/stage/usr/local/lib/python3.7/site-packages/gsd byte-compiling /construction/science/py-gsd/stage/usr/local/lib/python3.7/site-packages/gsd/__main__.py to __main__.cpython-37.pyc byte-compiling /construction/science/py-gsd/stage/usr/local/lib/python3.7/site-packages/gsd/test/test_largefile.py to test_largefile.cpython-37.pyc byte-compiling /construction/science/py-gsd/stage/usr/local/lib/python3.7/site-packages/gsd/test/conftest.py to conftest.cpython-37.pyc byte-compiling /construction/science/py-gsd/stage/usr/local/lib/python3.7/site-packages/gsd/test/test_hoomd.py to test_hoomd.cpython-37.pyc byte-compiling /construction/science/py-gsd/stage/usr/local/lib/python3.7/site-packages/gsd/test/test_fl.py to test_fl.cpython-37.pyc byte-compiling /construction/science/py-gsd/stage/usr/local/lib/python3.7/site-packages/gsd/pygsd.py to pygsd.cpython-37.pyc byte-compiling /construction/science/py-gsd/stage/usr/local/lib/python3.7/site-packages/gsd/version.py to version.cpython-37.pyc byte-compiling /construction/science/py-gsd/stage/usr/local/lib/python3.7/site-packages/gsd/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-gsd/stage/usr/local/lib/python3.7/site-packages/gsd/hoomd.py to hoomd.cpython-37.pyc writing byte-compilation script '/tmp/tmpa7p2n1mu.py' /usr/local/bin/python3.7 /tmp/tmpa7p2n1mu.py removing /tmp/tmpa7p2n1mu.py running install_egg_info running egg_info writing gsd.egg-info/PKG-INFO writing dependency_links to gsd.egg-info/dependency_links.txt writing entry points to gsd.egg-info/entry_points.txt writing requirements to gsd.egg-info/requires.txt writing top-level names to gsd.egg-info/top_level.txt reading manifest file 'gsd.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'ChangeLog.md' writing manifest file 'gsd.egg-info/SOURCES.txt' Copying gsd.egg-info to /construction/science/py-gsd/stage/usr/local/lib/python3.7/site-packages/gsd-2.4.0-py3.7.egg-info running install_scripts Installing gsd script to /construction/science/py-gsd/stage/usr/local/bin writing list of installed files to '/construction/science/py-gsd/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: 'lib/python3.7/site-packages/gsd/fl.so' is not stripped consider trying INSTALL_TARGET=install-strip or using ${STRIP_CMD} Error: /usr/local/lib/python3.7/site-packages/gsd/fl.so is linked to /usr/local/lib/libintl.so.8 from devel/gettext-runtime but it is not declared as a dependency Warning: you need USES+=gettext-runtime Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:06 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- ====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for py37-gsd-2.4.0 file sizes/checksums [36]: 0% file sizes/checksums [36]: 100% packing files [36]: 0% packing files [36]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:00 TOTAL TIME 00:01:32