------------------------------------------------------------------------------- -- Phase: Environment ------------------------------------------------------------------------------- NO_DEPENDS=1 UNAME_r=5.9 UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=unknown UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 LANG=C HOME=/root USER=root TERM=dumb SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: showconfig ------------------------------------------------------------------------------- ===> The following configuration options are available for openbabel-3.1.1: CAIRO=on: PNG support via cairo library GUI=on: GUI (Graphical User Interface) support PYTHON=on: Python bindings or support ===> Use 'make config' to modify these settings SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ENV ------------------------------------------------------------------------------- PKG_CONFIG=pkgconf PYTHON="/usr/local/bin/python3.7" XDG_DATA_HOME=/construction/science/openbabel XDG_CONFIG_HOME=/construction/science/openbabel HOME=/construction/science/openbabel TMPDIR="/tmp" PATH=/construction/science/openbabel/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 WX_CONFIG=/usr/local/bin/wxgtk3u-3.0-config LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ARGS ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ENV ------------------------------------------------------------------------------- XDG_DATA_HOME=/construction/science/openbabel XDG_CONFIG_HOME=/construction/science/openbabel HOME=/construction/science/openbabel TMPDIR="/tmp" PATH=/construction/science/openbabel/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 WX_CONFIG=/usr/local/bin/wxgtk3u-3.0-config LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ARGS ------------------------------------------------------------------------------- DESTDIR=/construction/science/openbabel/stage SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: PLIST_SUB ------------------------------------------------------------------------------- VERSION=3.1.0 CAIRO="" NO_CAIRO="@comment " GUI="" NO_GUI="@comment " PYTHON="" NO_PYTHON="@comment " CMAKE_BUILD_TYPE="release" GTK2_VERSION="2.10.0" GTK3_VERSION="3.0.0" PYTHON_INCLUDEDIR=include/python3.7m PYTHON_LIBDIR=lib/python3.7 PYTHON_PLATFORM=dragonfly5 PYTHON_SITELIBDIR=lib/python3.7/site-packages PYTHON_SUFFIX=37 PYTHON_EXT_SUFFIX= PYTHON_VER=3.7 PYTHON_VERSION=python3.7 PYTHON2="@comment " PYTHON3="" OSREL=5.9 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/openbabel" EXAMPLESDIR="share/examples/openbabel" DATADIR="share/openbabel" WWWDIR="www/openbabel" ETCDIR="etc/openbabel" SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: SUB_LIST ------------------------------------------------------------------------------- CAIRO="" NO_CAIRO="@comment " GUI="" NO_GUI="@comment " PYTHON="" NO_PYTHON="@comment " PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/openbabel DOCSDIR=/usr/local/share/doc/openbabel EXAMPLESDIR=/usr/local/share/examples/openbabel WWWDIR=/usr/local/www/openbabel ETCDIR=/usr/local/etc/openbabel SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: /etc/make.conf ------------------------------------------------------------------------------- DPORTS_BUILDER=yes DISABLE_LICENSES=yes DEFAULT_VERSIONS=ssl=openssl FORCE_PACKAGE=yes DEVELOPER=yes USE_PACKAGE_DEPENDS_ONLY=yes PORTSDIR=/xports PORT_DBDIR=/options PKG_DBDIR=/var/db/pkg PKG_CACHEDIR=/var/cache/pkg PKG_SUFX=.txz DEVELOPER=1 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500906 OSVERSION=9999999 OSREL=5.9 _OSRELEASE=5.9-SYNTH DISTDIR=/distfiles WRKDIRPREFIX=/construction BATCH=yes PACKAGE_BUILDING=yes PKG_CREATE_VERBOSE=yes MAKE_JOBS_NUMBER=10 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/rapidjson-1.1.0.524.txz Installing /packages/All/libnghttp2-1.42.0.txz Installing /packages/All/ca_root_nss-3.58.txz ===== Message from ca_root_nss-3.58: -- FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem Installing /packages/All/openssl-1.1.1i,1.txz Installing /packages/All/curl-7.74.0.txz Installing /packages/All/expat-2.2.10.txz Installing /packages/All/libuv-1.40.0.txz Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/gettext-runtime-0.21.txz Installing /packages/All/rhash-1.4.1.txz Installing /packages/All/liblz4-1.9.3,1.txz Installing /packages/All/libarchive-3.4.3_1,1.txz Installing /packages/All/ncurses-6.2.20210116.txz Installing /packages/All/cmake-3.19.2.txz Installing /packages/All/gmp-6.2.1.txz Installing /packages/All/mpfr-4.1.0.txz Installing /packages/All/metis-5.1.0_8.txz ===== Message from metis-5.1.0_8: -- ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Installing /packages/All/tbb-2020.3_1.txz Installing /packages/All/mpc-1.1.0_2.txz UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/binutils-2.33.1_4,1.txz Installing /packages/All/gcc8-8.4.0.txz ===== Message from gcc8-8.4.0: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/openblas-0.3.12,1.txz Installing /packages/All/suitesparse-5.8.1.txz Installing /packages/All/blas-3.5.0_6.txz Installing /packages/All/lapack-3.5.0_8.txz Installing /packages/All/superlu-5.2.2.txz Installing /packages/All/icu-68.2,1.txz Installing /packages/All/boost-libs-1.72.0_3.txz ===== Message from boost-libs-1.72.0_3: -- You have built the Boost library with thread support. Don't forget to add -pthread to your linker options when linking your code. Installing /packages/All/adol-c-2.7.2.txz Installing /packages/All/fftw3-3.3.9.txz Installing /packages/All/libffi-3.3_1.txz Installing /packages/All/libxml2-2.9.10_2.txz Installing /packages/All/wayland-1.18.0.txz Installing /packages/All/zstd-1.4.5_1.txz Installing /packages/All/pciids-20201127.txz Installing /packages/All/libpciaccess-0.16.txz Installing /packages/All/libdrm-2.4.101.txz Installing /packages/All/libunwind-20200331_1.txz Installing /packages/All/libpthread-stubs-0.4.txz Installing /packages/All/libXau-1.0.9.txz Installing /packages/All/xorgproto-2020.1.txz Installing /packages/All/libXdmcp-1.1.3.txz Installing /packages/All/libxcb-1.14_1.txz Installing /packages/All/libX11-1.6.12,1.txz Installing /packages/All/libXfixes-5.0.3_2.txz Installing /packages/All/libXdamage-1.1.5.txz Installing /packages/All/libXext-1.3.4,1.txz Installing /packages/All/libxshmfence-1.3.txz Installing /packages/All/libXxf86vm-1.1.4_3.txz Installing /packages/All/libXrender-0.9.10_2.txz Installing /packages/All/libXrandr-1.5.2.txz Installing /packages/All/mesa-libs-20.2.3.txz Installing /packages/All/eigen-3.3.8.txz Installing /packages/All/pkgconf-1.7.3,1.txz Installing /packages/All/readline-8.0.4_1.txz Installing /packages/All/python37-3.7.9_1.txz ===== Message from python37-3.7.9_1: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py37-gdbm databases/py-gdbm@py37 py37-sqlite3 databases/py-sqlite3@py37 py37-tkinter x11-toolkits/py-tkinter@py37 Installing /packages/All/maeparser-1.2.4.txz Installing /packages/All/coordgenlibs-1.4.2.txz Installing /packages/All/png-1.6.37.txz Installing /packages/All/freetype2-2.10.4.txz ===== Message from freetype2-2.10.4: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/site/index.html, if documentation was installed). Installing /packages/All/fontconfig-2.13.92_2,1.txz Running fc-cache to build fontconfig cache... Font directories: /usr/local/share/fonts /usr/local/lib/X11/fonts /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory fc-cache: succeeded Installing /packages/All/pcre-8.44.txz Installing /packages/All/libiconv-1.16.txz Installing /packages/All/glib-2.66.4_1,1.txz No schema files found: doing nothing. Installing /packages/All/pixman-0.40.0_1.txz Installing /packages/All/cairo-1.16.0_1,3.txz Installing /packages/All/libgpg-error-1.41.txz Installing /packages/All/libgcrypt-1.8.7.txz Installing /packages/All/libunistring-0.9.10_1.txz Installing /packages/All/libidn2-2.3.0_1.txz Installing /packages/All/libpsl-0.21.1_1.txz Installing /packages/All/libedit-3.1.20191231,1.txz Installing /packages/All/sqlite3-3.34.0,1.txz Installing /packages/All/nettle-3.6.txz Installing /packages/All/libtasn1-4.16.0_1.txz Installing /packages/All/bash-5.1.4_1.txz Installing /packages/All/bash-completion-2.11,2.txz ===== Message from bash-completion-2.11,2: -- To enable the bash completion library, add the following to your .bashrc file: [[ $PS1 && -f /usr/local/share/bash-completion/bash_completion.sh ]] && \ source /usr/local/share/bash-completion/bash_completion.sh See /usr/local/share/doc/bash-completion/README.md for more information. Installing /packages/All/p11-kit-0.23.22.txz Installing /packages/All/tpm-emulator-0.7.4_2.txz ===> Creating groups. Creating group '_tss' with gid '601'. ===> Creating users Creating user '_tss' with uid '601'. Installing /packages/All/trousers-0.3.14_3.txz ===> Creating groups. Using existing group '_tss'. ===> Creating users Using existing user '_tss'. ===== Message from trousers-0.3.14_3: -- To run tcsd automatically, add the following line to /etc/rc.conf: tcsd_enable="YES" You might want to edit /usr/local/etc/tcsd.conf to reflect your setup. If you want to use tcsd with software TPM emulator, use the following configuration in /etc/rc.conf: tcsd_enable="YES" tcsd_mode="emulator" tpmd_enable="YES" To use TPM, add your_account to '_tss' group like following: # pw groupmod _tss -m your_account Installing /packages/All/gnutls-3.6.15.txz Installing /packages/All/libICE-1.0.10,1.txz Installing /packages/All/libSM-1.2.3,1.txz Installing /packages/All/dbus-1.12.20_3.txz ===> Creating groups. Creating group 'messagebus' with gid '556'. ===> Creating users Creating user 'messagebus' with uid '556'. Installing /packages/All/libproxy-0.4.15.txz Installing /packages/All/gsettings-desktop-schemas-3.38.0.txz Installing /packages/All/glib-networking-2.66.0.txz Installing /packages/All/libsoup-2.72.0.txz Installing /packages/All/jbigkit-2.1_1.txz Installing /packages/All/jpeg-turbo-2.0.6.txz Installing /packages/All/tiff-4.2.0.txz Installing /packages/All/libmspack-0.10.1.txz Installing /packages/All/perl5-5.32.0_1.txz Installing /packages/All/hunspell-1.7.0_2.txz Installing /packages/All/enchant2-2.2.3_4.txz Installing /packages/All/fribidi-1.0.10.txz Installing /packages/All/giflib-5.2.1.txz Installing /packages/All/webp-1.1.0.txz Installing /packages/All/libsecret-0.20.4.txz Installing /packages/All/shared-mime-info-2.0.txz Installing /packages/All/gdk-pixbuf2-2.40.0.txz Installing /packages/All/libnotify-0.7.9_1.txz Installing /packages/All/hyphen-2.8.8.txz Installing /packages/All/lcms2-2.11_1.txz Installing /packages/All/openjpeg-2.4.0.txz Installing /packages/All/graphite2-1.3.14.txz Installing /packages/All/harfbuzz-2.7.4.txz Installing /packages/All/harfbuzz-icu-2.7.4_1.txz Installing /packages/All/brotli-1.0.9,1.txz Installing /packages/All/woff2-1.0.2_4.txz Installing /packages/All/xkeyboard-config-2.31.txz Installing /packages/All/libxkbcommon-1.0.3.txz ===== Message from libxkbcommon-1.0.3: -- If arrow keys don't work under X11 switch to legacy rules e.g., For sh/bash/ksh/zsh run and (optionally) add into ~/.profile: export XKB_DEFAULT_RULES=xorg For csh/tcsh run and (optionally) add into ~/.login: setenv XKB_DEFAULT_RULES xorg Installing /packages/All/libwpe-1.4.0.1.txz Installing /packages/All/wpebackend-fdo-1.4.1.txz Installing /packages/All/atk-2.36.0.txz Installing /packages/All/libepoxy-1.5.4.txz Installing /packages/All/libXi-1.7.10,1.txz Installing /packages/All/libXtst-1.2.3_2.txz Installing /packages/All/at-spi2-core-2.36.0.txz Installing /packages/All/at-spi2-atk-2.34.2.txz Installing /packages/All/libdaemon-0.14_1.txz Installing /packages/All/dbus-glib-0.110.txz Installing /packages/All/gdbm-1.19.txz Installing /packages/All/libevent-2.1.12.txz Installing /packages/All/gnome_subr-1.0.txz Installing /packages/All/avahi-app-0.8.txz ===> Creating groups. Creating group 'avahi' with gid '558'. ===> Creating users Creating user 'avahi' with uid '558'. Installing /packages/All/libpaper-1.1.24.4.txz Installing /packages/All/cups-2.3.3_1.txz ===> Creating groups. Creating group 'cups' with gid '193'. ===> Creating users Creating user 'cups' with uid '193'. Installing /packages/All/libgsf-1.14.47_1.txz Installing /packages/All/libfontenc-1.1.4.txz Installing /packages/All/mkfontscale-1.2.1.txz Installing /packages/All/font-bh-ttf-1.0.3_4.txz Installing /packages/All/font-misc-meltho-1.0.3_4.txz Installing /packages/All/font-misc-ethiopic-1.0.4.txz Installing /packages/All/encodings-1.0.5,1.txz Installing /packages/All/dejavu-2.37_1.txz ===== Message from dejavu-2.37_1: -- Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. Installing /packages/All/xorg-fonts-truetype-7.7_1.txz Installing /packages/All/libXft-2.3.3.txz Installing /packages/All/pango-1.42.4_5.txz Installing /packages/All/hicolor-icon-theme-0.17.txz Installing /packages/All/gtk-update-icon-cache-3.24.24.txz Installing /packages/All/adwaita-icon-theme-3.38.0.txz Installing /packages/All/wayland-protocols-1.20.txz Installing /packages/All/libcroco-0.6.13.txz Installing /packages/All/librsvg2-2.40.21.txz Installing /packages/All/libXcomposite-0.4.5,1.txz Installing /packages/All/libXcursor-1.2.0.txz Installing /packages/All/libXinerama-1.1.4_2,1.txz Installing /packages/All/gtk3-3.24.24.txz Installing /packages/All/libxslt-1.1.34_1.txz Installing /packages/All/gstreamer1-1.16.2.txz Installing /packages/All/gobject-introspection-1.66.1,1.txz Installing /packages/All/json-glib-1.6.0.txz Installing /packages/All/geoclue-2.5.5.txz Installing /packages/All/orc-0.4.31.txz Installing /packages/All/iso-codes-4.2.txz Installing /packages/All/gstreamer1-plugins-1.16.2_2.txz Installing /packages/All/gstreamer1-plugins-bad-1.16.2.txz Installing /packages/All/pygobject3-common-3.28.3_3.txz Installing /packages/All/py37-setuptools-44.0.0.txz Installing /packages/All/py37-cairo-1.18.1_1,1.txz Installing /packages/All/py37-gobject3-3.28.3_3.txz Installing /packages/All/graphene-1.10.2.txz Installing /packages/All/libGLU-9.0.1.txz Installing /packages/All/gstreamer1-plugins-gl-1.16.2_1.txz Installing /packages/All/libXt-1.2.0,1.txz Installing /packages/All/webkit2-gtk3-2.30.2.txz Installing /packages/All/wx30-gtk3-3.0.5.1.txz UNFLAVORED devel/binutils -> use devel/binutils@native SUCCEEDED 00:02:27 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> openbabel-3.1.1 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> openbabel-3.1.1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by openbabel-3.1.1 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> openbabel-3.1.1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by openbabel-3.1.1 for building => SHA256 Checksum OK for openbabel-3.1.1-source.tar.bz2. SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> openbabel-3.1.1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by openbabel-3.1.1 for building ===> Extracting for openbabel-3.1.1 ===> openbabel-3.1.1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by openbabel-3.1.1 for building => SHA256 Checksum OK for openbabel-3.1.1-source.tar.bz2. Extracted Memory Use: 264.88M SUCCEEDED 00:00:24 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for openbabel-3.1.1 SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> openbabel-3.1.1 depends on package: rapidjson>0 - found ===> openbabel-3.1.1 depends on file: /usr/local/bin/cmake - found ===> openbabel-3.1.1 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - found ===> openbabel-3.1.1 depends on package: pkgconf>=1.3.0_1 - found ===> openbabel-3.1.1 depends on file: /usr/local/bin/python3.7 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- ===> openbabel-3.1.1 depends on shared library: libmaeparser.so - found (/usr/local/lib/libmaeparser.so) ===> openbabel-3.1.1 depends on shared library: libcoordgen.so - found (/usr/local/lib/libcoordgen.so) ===> openbabel-3.1.1 depends on shared library: libboost_thread.so - found (/usr/local/lib/libboost_thread.so) ===> openbabel-3.1.1 depends on shared library: libcairo.so - found (/usr/local/lib/libcairo.so) ===> openbabel-3.1.1 depends on shared library: libxml2.so - found (/usr/local/lib/libxml2.so) ===> openbabel-3.1.1 depends on shared library: libwx_baseu-3.0.so - found (/usr/local/lib/libwx_baseu-3.0.so) SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> openbabel-3.1.1 depends on package: rapidjson>0 - found ===> openbabel-3.1.1 depends on file: /usr/local/bin/cmake - found ===> openbabel-3.1.1 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - found ===> openbabel-3.1.1 depends on package: pkgconf>=1.3.0_1 - found ===> openbabel-3.1.1 depends on file: /usr/local/bin/python3.7 - found ===> openbabel-3.1.1 depends on shared library: libmaeparser.so - found (/usr/local/lib/libmaeparser.so) ===> openbabel-3.1.1 depends on shared library: libcoordgen.so - found (/usr/local/lib/libcoordgen.so) ===> openbabel-3.1.1 depends on shared library: libboost_thread.so - found (/usr/local/lib/libboost_thread.so) ===> openbabel-3.1.1 depends on shared library: libcairo.so - found (/usr/local/lib/libcairo.so) ===> openbabel-3.1.1 depends on shared library: libxml2.so - found (/usr/local/lib/libxml2.so) ===> openbabel-3.1.1 depends on shared library: libwx_baseu-3.0.so - found (/usr/local/lib/libwx_baseu-3.0.so) ===> Configuring for openbabel-3.1.1 /usr/bin/env WRKSRC=/construction/science/openbabel/openbabel-3.1.1 REWARNFILE=/construction/science/openbabel/reinplace_warnings.txt /xports/Mk/Scripts/sed_checked.sh -e '/pkgconfig/s,${LIB_INSTALL_DIR},libdata,' /construction/science/openbabel/openbabel-3.1.1/CMakeLists.txt ===> Performing out-of-source build /bin/mkdir -p /construction/science/openbabel/.build -- The C compiler identification is GNU 8.3.0 -- The CXX compiler identification is GNU 8.3.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at CMakeLists.txt:14 (cmake_policy): The OLD behavior for policy CMP0042 will be removed from a future version of CMake. The cmake-policies(7) manual explains that the OLD behaviors of all policies are deprecated and that a policy should be set to OLD only under specific short-term circumstances. Projects should be ported to the NEW behavior and not rely on setting a policy to OLD. -- Using included inchi library. -- Found LibXml2: /usr/local/lib/libxml2.so (found version "2.9.10") -- Found ZLIB: /usr/lib/libz.so (found version "1.2.11") -- Found wxWidgets: -L/usr/local/lib;-pthread;;;-lwx_baseu-3.0;-lwx_gtk3u_core-3.0;-lwx_gtk3u_adv-3.0 (found version "3.0.5") -- Looking for conio.h -- Looking for conio.h - not found -- Looking for sys/time.h -- Looking for sys/time.h - found -- Looking for time.h -- Looking for time.h - found -- Looking for strings.h -- Looking for strings.h - found -- Looking for rpc/xdr.h -- Looking for rpc/xdr.h - not found -- Looking for regex.h -- Looking for regex.h - found -- Looking for C++ include sstream -- Looking for C++ include sstream - found -- Looking for rint -- Looking for rint - not found -- Looking for snprintf -- Looking for snprintf - found -- Looking for sranddev -- Looking for sranddev - found -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strncasecmp -- Looking for strncasecmp - found -- Looking for dlopen in dl -- Looking for dlopen in dl - found -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of clock_t -- Check size of clock_t - done -- Performing Test SCANDIR_NEEDS_CONST -- Performing Test SCANDIR_NEEDS_CONST - Failed -- Performing Test HAVE_GCC_VISIBILITY -- Performing Test HAVE_GCC_VISIBILITY - Success -- Checking available shared pointer... -- Performing Test HAVE_STD_SHARED_PTR -- Performing Test HAVE_STD_SHARED_PTR - Success -- Performing Test HAVE_STD_TR1_SHARED_PTR -- Performing Test HAVE_STD_TR1_SHARED_PTR - Failed -- Performing Test HAVE_STD_TR1_SHARED_PTR_IN_TR1_HEADER -- Performing Test HAVE_STD_TR1_SHARED_PTR_IN_TR1_HEADER - Success -- Use std::shared_ptr in memory -- Found Boost: /usr/local/include (found version "1.72.0") found components: program_options iostreams regex -- Found Eigen3: /usr/local/include/eigen3 (Required is at least version "2.91.0") -- Found Boost: /usr/local/include (found version "1.72.0") found components: filesystem iostreams unit_test_framework regex -- maeparser include dir set as '/usr/local/include' -- maeparser libraries set as '/usr/local/lib/libmaeparser.so' -- Maestro formats will be supported. Using MaeParser libraries at /usr/local/lib/libmaeparser.so. -- coordgen include dir set as /usr/local/include -- coordgen libraries set as '/usr/local/lib/libcoordgen.so' -- coordgen templates file set as '/usr/local/share/coordgen/templates.mae' -- Coordinate generation with Coordgen will be supported. Using Coordgen libraries at /usr/local/lib/libcoordgen.so. -- Found PkgConfig: pkgconf (found version "1.7.3") -- Found RapidJSON: /usr/local/include (found suitable version "1.1.0", minimum required is "1.1.0") -- JSON formats will be supported. Using RapidJSON 1.1.0 at /usr/local/include -- Checking for module 'cairo' -- Found cairo, version 1.16.0 -- Found Cairo: /usr/local/lib/libcairo.so -- Cairo found. PNG output will be supported. -- Found Boost: /usr/local/include (found suitable version "1.72.0", minimum required is "1.45.0") found components: system -- Looking for pthread.h -- Looking for pthread.h - found -- Found Threads: TRUE -- Found Boost: /usr/local/include (found version "1.72.0") found components: program_options iostreams regex -- Looking for getopt -- Looking for getopt - found -- Attempting to build the GUI -- wxWidgets found => GUI will be built -- Found PythonInterp: /usr/local/bin/python3.7 (found version "3.7.9") CMake Deprecation Warning at scripts/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Found PythonLibs: /usr/local/lib/libpython3.7m.so (found version "3.7.9") -- Python bindings will be compiled -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_C_FLAGS_DEBUG -- Build files have been written to: /construction/science/openbabel/.build SUCCEEDED 00:00:11 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for openbabel-3.1.1 /usr/local/bin/cmake -S/construction/science/openbabel/openbabel-3.1.1 -B/construction/science/openbabel/.build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/local/bin/cmake -E cmake_progress_start /construction/science/openbabel/.build/CMakeFiles /construction/science/openbabel/.build//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all --- src/CMakeFiles/openbabel.dir/all --- --- src/formats/libinchi/CMakeFiles/inchi.dir/all --- --- src/CMakeFiles/openbabel.dir/all --- /usr/bin/make -f src/CMakeFiles/openbabel.dir/build.make src/CMakeFiles/openbabel.dir/depend --- src/formats/libinchi/CMakeFiles/inchi.dir/all --- /usr/bin/make -f src/formats/libinchi/CMakeFiles/inchi.dir/build.make src/formats/libinchi/CMakeFiles/inchi.dir/depend --- src/CMakeFiles/openbabel.dir/all --- --- src/CMakeFiles/openbabel.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src /construction/science/openbabel/.build /construction/science/openbabel/.build/src /construction/science/openbabel/.build/src/CMakeFiles/openbabel.dir/DependInfo.cmake --- src/formats/libinchi/CMakeFiles/inchi.dir/all --- --- src/formats/libinchi/CMakeFiles/inchi.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats/libinchi /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats/libinchi /construction/science/openbabel/.build/src/formats/libinchi/CMakeFiles/inchi.dir/DependInfo.cmake Scanning dependencies of target inchi /usr/bin/make -f src/formats/libinchi/CMakeFiles/inchi.dir/build.make src/formats/libinchi/CMakeFiles/inchi.dir/build --- src/formats/libinchi/CMakeFiles/inchi.dir/ichi_bns.c.o --- --- src/formats/libinchi/CMakeFiles/inchi.dir/ichi_io.c.o --- --- src/formats/libinchi/CMakeFiles/inchi.dir/ichican2.c.o --- --- src/formats/libinchi/CMakeFiles/inchi.dir/ichicano.c.o --- --- src/formats/libinchi/CMakeFiles/inchi.dir/ichicans.c.o --- --- src/formats/libinchi/CMakeFiles/inchi.dir/ichiisot.c.o --- --- src/formats/libinchi/CMakeFiles/inchi.dir/ichilnct.c.o --- --- src/formats/libinchi/CMakeFiles/inchi.dir/ichimak2.c.o --- --- src/formats/libinchi/CMakeFiles/inchi.dir/ichimake.c.o --- --- src/CMakeFiles/openbabel.dir/all --- Scanning dependencies of target openbabel --- src/formats/libinchi/CMakeFiles/inchi.dir/all --- --- src/formats/libinchi/CMakeFiles/inchi.dir/ichiisot.c.o --- [ 1%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiisot.c.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -w -o CMakeFiles/inchi.dir/ichiisot.c.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/libinchi/ichiisot.c --- src/CMakeFiles/openbabel.dir/all --- /usr/bin/make -f src/CMakeFiles/openbabel.dir/build.make src/CMakeFiles/openbabel.dir/build --- src/formats/libinchi/CMakeFiles/inchi.dir/all --- --- src/formats/libinchi/CMakeFiles/inchi.dir/ichican2.c.o --- [ 1%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichican2.c.o --- src/formats/libinchi/CMakeFiles/inchi.dir/ichi_io.c.o --- [ 1%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichi_io.c.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -w -o CMakeFiles/inchi.dir/ichi_io.c.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/libinchi/ichi_io.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichican2.c.o --- cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -w -o CMakeFiles/inchi.dir/ichican2.c.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/libinchi/ichican2.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichi_bns.c.o --- [ 1%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichi_bns.c.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -w -o CMakeFiles/inchi.dir/ichi_bns.c.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/libinchi/ichi_bns.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichilnct.c.o --- [ 1%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichilnct.c.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -w -o CMakeFiles/inchi.dir/ichilnct.c.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/libinchi/ichilnct.c --- src/CMakeFiles/openbabel.dir/all --- --- src/CMakeFiles/openbabel.dir/alias.cpp.o --- --- src/formats/libinchi/CMakeFiles/inchi.dir/all --- --- src/formats/libinchi/CMakeFiles/inchi.dir/ichimake.c.o --- [ 1%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichimake.c.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -w -o CMakeFiles/inchi.dir/ichimake.c.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/libinchi/ichimake.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichimak2.c.o --- [ 1%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichimak2.c.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -w -o CMakeFiles/inchi.dir/ichimak2.c.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/libinchi/ichimak2.c --- src/CMakeFiles/openbabel.dir/all --- [ 1%] Building CXX object src/CMakeFiles/openbabel.dir/alias.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/openbabel.dir/alias.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/alias.cpp --- src/formats/libinchi/CMakeFiles/inchi.dir/all --- --- src/formats/libinchi/CMakeFiles/inchi.dir/ichicans.c.o --- [ 1%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichicans.c.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -w -o CMakeFiles/inchi.dir/ichicans.c.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/libinchi/ichicans.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichicano.c.o --- [ 1%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichicano.c.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -w -o CMakeFiles/inchi.dir/ichicano.c.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/libinchi/ichicano.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichimap1.c.o --- --- src/formats/libinchi/CMakeFiles/inchi.dir/ichimap2.c.o --- --- src/formats/libinchi/CMakeFiles/inchi.dir/ichimap1.c.o --- [ 1%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichimap1.c.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -w -o CMakeFiles/inchi.dir/ichimap1.c.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/libinchi/ichimap1.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichimap2.c.o --- [ 1%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichimap2.c.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -w -o CMakeFiles/inchi.dir/ichimap2.c.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/libinchi/ichimap2.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichimap4.c.o --- [ 1%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichimap4.c.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -w -o CMakeFiles/inchi.dir/ichimap4.c.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/libinchi/ichimap4.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichinorm.c.o --- [ 2%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichinorm.c.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -w -o CMakeFiles/inchi.dir/ichinorm.c.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/libinchi/ichinorm.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichiparm.c.o --- [ 2%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiparm.c.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -w -o CMakeFiles/inchi.dir/ichiparm.c.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/libinchi/ichiparm.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichiprt1.c.o --- [ 2%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiprt1.c.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -w -o CMakeFiles/inchi.dir/ichiprt1.c.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/libinchi/ichiprt1.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichiprt2.c.o --- [ 2%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiprt2.c.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -w -o CMakeFiles/inchi.dir/ichiprt2.c.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/libinchi/ichiprt2.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichiprt3.c.o --- [ 2%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiprt3.c.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -w -o CMakeFiles/inchi.dir/ichiprt3.c.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/libinchi/ichiprt3.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichiqueu.c.o --- [ 2%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiqueu.c.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -w -o CMakeFiles/inchi.dir/ichiqueu.c.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/libinchi/ichiqueu.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichiread.c.o --- [ 2%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiread.c.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -w -o CMakeFiles/inchi.dir/ichiread.c.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/libinchi/ichiread.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichiring.c.o --- [ 3%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiring.c.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -w -o CMakeFiles/inchi.dir/ichiring.c.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/libinchi/ichiring.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr1.c.o --- [ 3%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr1.c.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -w -o CMakeFiles/inchi.dir/ichirvr1.c.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/libinchi/ichirvr1.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr2.c.o --- [ 3%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr2.c.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -w -o CMakeFiles/inchi.dir/ichirvr2.c.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/libinchi/ichirvr2.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr3.c.o --- [ 3%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr3.c.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -w -o CMakeFiles/inchi.dir/ichirvr3.c.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/libinchi/ichirvr3.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr4.c.o --- [ 3%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr4.c.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -w -o CMakeFiles/inchi.dir/ichirvr4.c.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/libinchi/ichirvr4.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr5.c.o --- --- src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr6.c.o --- --- src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr5.c.o --- [ 3%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr5.c.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -w -o CMakeFiles/inchi.dir/ichirvr5.c.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/libinchi/ichirvr5.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr6.c.o --- [ 3%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr6.c.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -w -o CMakeFiles/inchi.dir/ichirvr6.c.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/libinchi/ichirvr6.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr7.c.o --- [ 4%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr7.c.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -w -o CMakeFiles/inchi.dir/ichirvr7.c.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/libinchi/ichirvr7.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichisort.c.o --- [ 4%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichisort.c.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -w -o CMakeFiles/inchi.dir/ichisort.c.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/libinchi/ichisort.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichister.c.o --- [ 4%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichister.c.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -w -o CMakeFiles/inchi.dir/ichister.c.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/libinchi/ichister.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ichitaut.c.o --- [ 4%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichitaut.c.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -w -o CMakeFiles/inchi.dir/ichitaut.c.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/libinchi/ichitaut.c --- src/formats/libinchi/CMakeFiles/inchi.dir/ikey_base26.c.o --- [ 4%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ikey_base26.c.o cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_USRDLL -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -w -o 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-I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/openbabel.dir/bondtyper.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/bondtyper.cpp --- src/CMakeFiles/openbabel.dir/chains.cpp.o --- [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/chains.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/openbabel.dir/chains.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/chains.cpp --- src/CMakeFiles/openbabel.dir/bond.cpp.o --- [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/bond.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/openbabel.dir/bond.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/bond.cpp --- src/formats/libinchi/CMakeFiles/inchi.dir/all --- --- lib/libinchi.so.0.4.1 --- --- src/CMakeFiles/openbabel.dir/all --- --- src/CMakeFiles/openbabel.dir/chargemodel.cpp.o --- --- src/CMakeFiles/openbabel.dir/data.cpp.o --- --- src/formats/libinchi/CMakeFiles/inchi.dir/all --- [ 7%] Linking C shared library ../../../lib/libinchi.so cd /construction/science/openbabel/.build/src/formats/libinchi && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/inchi.dir/link.txt --verbose=1 --- src/CMakeFiles/openbabel.dir/all --- --- 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src/CMakeFiles/openbabel.dir/data_utilities.cpp.o --- --- src/CMakeFiles/openbabel.dir/descriptor.cpp.o --- --- src/CMakeFiles/openbabel.dir/data_utilities.cpp.o --- [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/data_utilities.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/openbabel.dir/data_utilities.cpp.o -c 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[ 8%] Building CXX object src/CMakeFiles/openbabel.dir/forcefield.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/openbabel.dir/forcefield.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/forcefield.cpp --- src/CMakeFiles/openbabel.dir/format.cpp.o --- [ 8%] Building CXX object 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-I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/openbabel.dir/isomorphism.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/isomorphism.cpp --- src/CMakeFiles/openbabel.dir/kekulize.cpp.o --- [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/kekulize.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/openbabel.dir/kekulize.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/kekulize.cpp --- src/CMakeFiles/openbabel.dir/locale.cpp.o --- [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/locale.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/openbabel.dir/locale.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/locale.cpp --- src/CMakeFiles/openbabel.dir/matrix.cpp.o --- [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/matrix.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/openbabel.dir/matrix.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/matrix.cpp --- src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o --- --- src/CMakeFiles/openbabel.dir/molchrg.cpp.o --- --- src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o --- [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/openbabel.dir/mcdlutil.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/mcdlutil.cpp --- src/CMakeFiles/openbabel.dir/molchrg.cpp.o --- [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/molchrg.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/openbabel.dir/molchrg.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/molchrg.cpp --- src/CMakeFiles/openbabel.dir/mol.cpp.o --- [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/mol.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/openbabel.dir/mol.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/mol.cpp --- src/CMakeFiles/openbabel.dir/obconversion.cpp.o --- [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/obconversion.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/openbabel.dir/obconversion.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/obconversion.cpp --- src/CMakeFiles/openbabel.dir/oberror.cpp.o --- [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/oberror.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/openbabel.dir/oberror.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/oberror.cpp --- src/CMakeFiles/openbabel.dir/obfunctions.cpp.o --- [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/obfunctions.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/openbabel.dir/obfunctions.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/obfunctions.cpp --- src/CMakeFiles/openbabel.dir/obiter.cpp.o --- [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/obiter.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/openbabel.dir/obiter.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/obiter.cpp --- src/CMakeFiles/openbabel.dir/obutil.cpp.o --- [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/obutil.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/openbabel.dir/obutil.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/obutil.cpp --- src/CMakeFiles/openbabel.dir/op.cpp.o --- [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/op.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/openbabel.dir/op.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/op.cpp --- src/CMakeFiles/openbabel.dir/parsmart.cpp.o --- [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/parsmart.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/openbabel.dir/parsmart.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/parsmart.cpp --- src/CMakeFiles/openbabel.dir/patty.cpp.o --- [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/patty.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/openbabel.dir/patty.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/patty.cpp --- src/CMakeFiles/openbabel.dir/phmodel.cpp.o --- [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/phmodel.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/openbabel.dir/phmodel.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/phmodel.cpp --- src/CMakeFiles/openbabel.dir/plugin.cpp.o --- [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/plugin.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/openbabel.dir/plugin.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/plugin.cpp --- src/CMakeFiles/openbabel.dir/pointgroup.cpp.o --- [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/pointgroup.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/openbabel.dir/pointgroup.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/pointgroup.cpp --- src/CMakeFiles/openbabel.dir/query.cpp.o --- [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/query.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON 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-DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/openbabel.dir/rand.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/rand.cpp --- src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o --- [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/openbabel.dir/reactionfacade.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/reactionfacade.cpp --- src/CMakeFiles/openbabel.dir/residue.cpp.o --- [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/residue.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/openbabel.dir/residue.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/residue.cpp --- src/CMakeFiles/openbabel.dir/ring.cpp.o --- [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/ring.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/openbabel.dir/ring.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/ring.cpp --- src/CMakeFiles/openbabel.dir/rotamer.cpp.o --- [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/rotamer.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/openbabel.dir/rotamer.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/rotamer.cpp --- src/CMakeFiles/openbabel.dir/rotor.cpp.o --- [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/rotor.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/openbabel.dir/rotor.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/rotor.cpp --- src/CMakeFiles/openbabel.dir/spectrophore.cpp.o --- [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/spectrophore.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/openbabel.dir/spectrophore.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/spectrophore.cpp --- src/CMakeFiles/openbabel.dir/tautomer.cpp.o --- [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/tautomer.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/openbabel.dir/tautomer.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/tautomer.cpp --- src/CMakeFiles/openbabel.dir/tokenst.cpp.o --- [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/tokenst.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/openbabel.dir/tokenst.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/tokenst.cpp --- src/CMakeFiles/openbabel.dir/transform.cpp.o --- [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/transform.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/openbabel.dir/transform.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/transform.cpp --- src/CMakeFiles/openbabel.dir/typer.cpp.o --- [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/typer.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/openbabel.dir/typer.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/typer.cpp --- src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o --- [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/openbabel.dir/obmolecformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/obmolecformat.cpp --- src/CMakeFiles/openbabel.dir/conformersearch.cpp.o --- [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/conformersearch.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/openbabel.dir/conformersearch.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/conformersearch.cpp --- src/CMakeFiles/openbabel.dir/confsearch.cpp.o --- [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/confsearch.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/openbabel.dir/confsearch.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/confsearch.cpp --- src/CMakeFiles/openbabel.dir/distgeom.cpp.o --- [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/distgeom.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/openbabel.dir/distgeom.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/distgeom.cpp --- src/CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o --- [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/dlhandler_unix.cpp --- src/CMakeFiles/openbabel.dir/depict/depict.cpp.o --- [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/depict/depict.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/openbabel.dir/depict/depict.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/depict/depict.cpp --- src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o --- [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/depict/svgpainter.cpp --- src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o --- [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/math/matrix3x3.cpp --- src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o --- [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/openbabel.dir/math/spacegroup.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/math/spacegroup.cpp --- src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o --- [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/openbabel.dir/math/transform3d.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/math/transform3d.cpp --- src/CMakeFiles/openbabel.dir/math/vector3.cpp.o --- [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/math/vector3.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/openbabel.dir/math/vector3.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/math/vector3.cpp --- src/CMakeFiles/openbabel.dir/math/align.cpp.o --- [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/math/align.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/openbabel.dir/math/align.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/math/align.cpp --- src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o --- [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/openbabel.dir/stereo/stereo.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/stereo/stereo.cpp --- src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o --- [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/stereo/tetranonplanar.cpp --- src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o --- [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/stereo/tetraplanar.cpp --- src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o --- [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/stereo/squareplanar.cpp --- src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o --- [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/stereo/cistrans.cpp --- src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o --- [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/stereo/tetrahedral.cpp --- src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o --- [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/openbabel.dir/stereo/perception.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/stereo/perception.cpp --- src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o --- [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/openbabel.dir/stereo/facade.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/stereo/facade.cpp --- src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o --- [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/stereo/gen3dstereohelper.cpp --- src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o --- /construction/science/openbabel/openbabel-3.1.1/src/stereo/perception.cpp: In function 'void OpenBabel::StereoRefToImplicit(OpenBabel::OBMol&, OpenBabel::OBStereo::Ref)': /construction/science/openbabel/openbabel-3.1.1/src/stereo/perception.cpp:2973:16: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] const std::binder1st > equal_to_atomId = std::bind1st (equal_to(), atomId); ^~~~~~~~~ In file included from /usr/include/c++/8.0/bits/stl_function.h:1368, from /usr/include/c++/8.0/bits/stl_tree.h:65, from /usr/include/c++/8.0/map:60, from /construction/science/openbabel/openbabel-3.1.1/include/openbabel/base.h:26, from /construction/science/openbabel/openbabel-3.1.1/include/openbabel/stereo/stereo.h:27, from /construction/science/openbabel/openbabel-3.1.1/include/openbabel/stereo/tetranonplanar.h:27, from /construction/science/openbabel/openbabel-3.1.1/include/openbabel/stereo/tetrahedral.h:27, from /construction/science/openbabel/openbabel-3.1.1/src/stereo/perception.cpp:26: /usr/include/c++/8.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ /construction/science/openbabel/openbabel-3.1.1/src/stereo/perception.cpp: In function 'void OpenBabel::ImplicitRefToStereo(OpenBabel::OBMol&, OpenBabel::OBStereo::Ref, OpenBabel::OBStereo::Ref)': /construction/science/openbabel/openbabel-3.1.1/src/stereo/perception.cpp:3005:16: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] const std::binder1st > equal_to_implicitRef = std::bind1st (equal_to(), (OBStereo::Ref) OBStereo::ImplicitRef); ^~~~~~~~~ In file included from /usr/include/c++/8.0/bits/stl_function.h:1368, from /usr/include/c++/8.0/bits/stl_tree.h:65, from /usr/include/c++/8.0/map:60, from /construction/science/openbabel/openbabel-3.1.1/include/openbabel/base.h:26, from /construction/science/openbabel/openbabel-3.1.1/include/openbabel/stereo/stereo.h:27, from /construction/science/openbabel/openbabel-3.1.1/include/openbabel/stereo/tetranonplanar.h:27, from /construction/science/openbabel/openbabel-3.1.1/include/openbabel/stereo/tetrahedral.h:27, from /construction/science/openbabel/openbabel-3.1.1/src/stereo/perception.cpp:26: /usr/include/c++/8.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ --- lib/libopenbabel.so.7.0.0 --- [ 16%] Linking CXX shared library ../lib/libopenbabel.so cd /construction/science/openbabel/.build/src && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/openbabel.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -Wl,-soname,libopenbabel.so.7 -o ../lib/libopenbabel.so.7.0.0 CMakeFiles/openbabel.dir/alias.cpp.o CMakeFiles/openbabel.dir/atom.cpp.o 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CMakeFiles/openbabel.dir/mol.cpp.o CMakeFiles/openbabel.dir/obconversion.cpp.o CMakeFiles/openbabel.dir/oberror.cpp.o CMakeFiles/openbabel.dir/obfunctions.cpp.o CMakeFiles/openbabel.dir/obiter.cpp.o CMakeFiles/openbabel.dir/obutil.cpp.o CMakeFiles/openbabel.dir/op.cpp.o CMakeFiles/openbabel.dir/parsmart.cpp.o CMakeFiles/openbabel.dir/patty.cpp.o CMakeFiles/openbabel.dir/phmodel.cpp.o CMakeFiles/openbabel.dir/plugin.cpp.o CMakeFiles/openbabel.dir/pointgroup.cpp.o CMakeFiles/openbabel.dir/query.cpp.o CMakeFiles/openbabel.dir/rand.cpp.o CMakeFiles/openbabel.dir/reactionfacade.cpp.o CMakeFiles/openbabel.dir/residue.cpp.o CMakeFiles/openbabel.dir/ring.cpp.o CMakeFiles/openbabel.dir/rotamer.cpp.o CMakeFiles/openbabel.dir/rotor.cpp.o CMakeFiles/openbabel.dir/spectrophore.cpp.o CMakeFiles/openbabel.dir/tautomer.cpp.o CMakeFiles/openbabel.dir/tokenst.cpp.o CMakeFiles/openbabel.dir/transform.cpp.o CMakeFiles/openbabel.dir/typer.cpp.o CMakeFiles/openbabel.dir/obmolecformat.cpp.o CMakeFiles/openbabel.dir/conformersearch.cpp.o CMakeFiles/openbabel.dir/confsearch.cpp.o CMakeFiles/openbabel.dir/distgeom.cpp.o CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o CMakeFiles/openbabel.dir/depict/depict.cpp.o CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o CMakeFiles/openbabel.dir/math/spacegroup.cpp.o CMakeFiles/openbabel.dir/math/transform3d.cpp.o CMakeFiles/openbabel.dir/math/vector3.cpp.o CMakeFiles/openbabel.dir/math/align.cpp.o CMakeFiles/openbabel.dir/stereo/stereo.cpp.o CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o CMakeFiles/openbabel.dir/stereo/perception.cpp.o CMakeFiles/openbabel.dir/stereo/facade.cpp.o CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread cd /construction/science/openbabel/.build/src && /usr/local/bin/cmake -E cmake_symlink_library ../lib/libopenbabel.so.7.0.0 ../lib/libopenbabel.so.7 ../lib/libopenbabel.so [ 17%] Built target openbabel --- src/CMakeFiles/plugin_descriptors.dir/all --- --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_fingerprints.dir/all --- --- src/CMakeFiles/plugin_forcefields.dir/all --- --- src/CMakeFiles/plugin_charges.dir/all --- --- src/formats/CMakeFiles/cmlreactformat.dir/all --- --- src/formats/CMakeFiles/xmlformat.dir/all --- --- src/formats/CMakeFiles/cmlformat.dir/all --- --- src/formats/CMakeFiles/rinchiformat.dir/all --- --- src/formats/CMakeFiles/chemdrawcdx.dir/all --- --- src/CMakeFiles/plugin_descriptors.dir/all --- /usr/bin/make -f src/CMakeFiles/plugin_descriptors.dir/build.make src/CMakeFiles/plugin_descriptors.dir/depend --- src/CMakeFiles/plugin_ops.dir/all --- /usr/bin/make -f src/CMakeFiles/plugin_ops.dir/build.make src/CMakeFiles/plugin_ops.dir/depend --- src/CMakeFiles/plugin_fingerprints.dir/all --- /usr/bin/make -f src/CMakeFiles/plugin_fingerprints.dir/build.make src/CMakeFiles/plugin_fingerprints.dir/depend --- src/CMakeFiles/plugin_forcefields.dir/all --- /usr/bin/make -f src/CMakeFiles/plugin_forcefields.dir/build.make src/CMakeFiles/plugin_forcefields.dir/depend --- src/CMakeFiles/plugin_charges.dir/all --- /usr/bin/make -f src/CMakeFiles/plugin_charges.dir/build.make src/CMakeFiles/plugin_charges.dir/depend --- src/formats/CMakeFiles/cmlreactformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/cmlreactformat.dir/build.make src/formats/CMakeFiles/cmlreactformat.dir/depend --- src/formats/CMakeFiles/xmlformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/xmlformat.dir/build.make src/formats/CMakeFiles/xmlformat.dir/depend --- src/formats/CMakeFiles/cmlformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/cmlformat.dir/build.make src/formats/CMakeFiles/cmlformat.dir/depend --- src/formats/CMakeFiles/rinchiformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/rinchiformat.dir/build.make src/formats/CMakeFiles/rinchiformat.dir/depend --- src/formats/CMakeFiles/chemdrawcdx.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/chemdrawcdx.dir/build.make src/formats/CMakeFiles/chemdrawcdx.dir/depend --- src/formats/CMakeFiles/xmlformat.dir/all --- --- src/formats/CMakeFiles/xmlformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/xmlformat.dir/DependInfo.cmake --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/depend --- --- src/CMakeFiles/plugin_descriptors.dir/all --- --- src/CMakeFiles/plugin_descriptors.dir/depend --- --- src/CMakeFiles/plugin_forcefields.dir/all --- --- src/CMakeFiles/plugin_forcefields.dir/depend --- --- src/CMakeFiles/plugin_descriptors.dir/all --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src /construction/science/openbabel/.build /construction/science/openbabel/.build/src /construction/science/openbabel/.build/src/CMakeFiles/plugin_descriptors.dir/DependInfo.cmake --- src/CMakeFiles/plugin_ops.dir/all --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src /construction/science/openbabel/.build /construction/science/openbabel/.build/src /construction/science/openbabel/.build/src/CMakeFiles/plugin_ops.dir/DependInfo.cmake --- src/CMakeFiles/plugin_forcefields.dir/all --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src /construction/science/openbabel/.build /construction/science/openbabel/.build/src /construction/science/openbabel/.build/src/CMakeFiles/plugin_forcefields.dir/DependInfo.cmake --- src/formats/CMakeFiles/cmlformat.dir/all --- --- src/formats/CMakeFiles/cmlformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/cmlformat.dir/DependInfo.cmake --- src/CMakeFiles/plugin_charges.dir/all --- --- src/CMakeFiles/plugin_charges.dir/depend --- --- src/formats/CMakeFiles/rinchiformat.dir/all --- --- src/formats/CMakeFiles/rinchiformat.dir/depend --- --- src/CMakeFiles/plugin_charges.dir/all --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src /construction/science/openbabel/.build /construction/science/openbabel/.build/src /construction/science/openbabel/.build/src/CMakeFiles/plugin_charges.dir/DependInfo.cmake --- src/formats/CMakeFiles/rinchiformat.dir/all --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/rinchiformat.dir/DependInfo.cmake --- src/formats/CMakeFiles/cmlreactformat.dir/all --- --- src/formats/CMakeFiles/cmlreactformat.dir/depend --- --- src/formats/CMakeFiles/chemdrawcdx.dir/all --- --- src/formats/CMakeFiles/chemdrawcdx.dir/depend --- --- src/formats/CMakeFiles/cmlreactformat.dir/all --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/cmlreactformat.dir/DependInfo.cmake --- src/formats/CMakeFiles/chemdrawcdx.dir/all --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/chemdrawcdx.dir/DependInfo.cmake --- src/formats/CMakeFiles/xmlformat.dir/all --- Scanning dependencies of target xmlformat /usr/bin/make -f src/formats/CMakeFiles/xmlformat.dir/build.make src/formats/CMakeFiles/xmlformat.dir/build --- src/formats/CMakeFiles/rinchiformat.dir/all --- Scanning dependencies of target rinchiformat /usr/bin/make -f src/formats/CMakeFiles/rinchiformat.dir/build.make src/formats/CMakeFiles/rinchiformat.dir/build --- src/CMakeFiles/plugin_descriptors.dir/all --- Scanning dependencies of target plugin_descriptors --- src/CMakeFiles/plugin_forcefields.dir/all --- Scanning dependencies of target plugin_forcefields --- src/CMakeFiles/plugin_descriptors.dir/all --- /usr/bin/make -f src/CMakeFiles/plugin_descriptors.dir/build.make src/CMakeFiles/plugin_descriptors.dir/build --- src/formats/CMakeFiles/xmlformat.dir/all --- --- src/formats/CMakeFiles/xmlformat.dir/xml/xmlformat.cpp.o --- --- src/CMakeFiles/plugin_forcefields.dir/all --- /usr/bin/make -f src/CMakeFiles/plugin_forcefields.dir/build.make src/CMakeFiles/plugin_forcefields.dir/build --- src/CMakeFiles/plugin_fingerprints.dir/all --- --- src/CMakeFiles/plugin_fingerprints.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src /construction/science/openbabel/.build /construction/science/openbabel/.build/src /construction/science/openbabel/.build/src/CMakeFiles/plugin_fingerprints.dir/DependInfo.cmake --- src/formats/CMakeFiles/xmlformat.dir/all --- [ 17%] Building CXX object src/formats/CMakeFiles/xmlformat.dir/xml/xmlformat.cpp.o cd /construction/science/openbabel/.build/src/formats && 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src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o --- --- src/CMakeFiles/plugin_descriptors.dir/all --- --- src/CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o --- --- src/formats/CMakeFiles/cmlformat.dir/all --- Scanning dependencies of target cmlformat /usr/bin/make -f src/formats/CMakeFiles/cmlformat.dir/build.make src/formats/CMakeFiles/cmlformat.dir/build --- src/formats/CMakeFiles/rinchiformat.dir/all --- --- src/formats/CMakeFiles/rinchiformat.dir/rinchiformat.cpp.o --- --- src/CMakeFiles/plugin_forcefields.dir/all --- [ 17%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/forcefields/forcefieldgaff.cpp --- src/formats/CMakeFiles/chemdrawcdx.dir/all --- Scanning dependencies of target chemdrawcdx --- src/CMakeFiles/plugin_fingerprints.dir/all --- Scanning dependencies of target plugin_fingerprints --- src/formats/CMakeFiles/cmlformat.dir/all --- --- src/formats/CMakeFiles/cmlformat.dir/xml/cmlformat.cpp.o --- --- src/formats/CMakeFiles/chemdrawcdx.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/chemdrawcdx.dir/build.make src/formats/CMakeFiles/chemdrawcdx.dir/build --- src/CMakeFiles/plugin_fingerprints.dir/all --- /usr/bin/make -f src/CMakeFiles/plugin_fingerprints.dir/build.make src/CMakeFiles/plugin_fingerprints.dir/build --- src/formats/CMakeFiles/chemdrawcdx.dir/all --- --- src/formats/CMakeFiles/chemdrawcdx.dir/chemdrawcdx.cpp.o --- --- src/CMakeFiles/plugin_fingerprints.dir/all --- --- src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o --- --- src/formats/CMakeFiles/rinchiformat.dir/all --- [ 17%] Building CXX object src/formats/CMakeFiles/rinchiformat.dir/rinchiformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Drinchiformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/rinchiformat.dir/rinchiformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/rinchiformat.cpp --- src/formats/CMakeFiles/chemdrawcdx.dir/all --- [ 17%] Building CXX object src/formats/CMakeFiles/chemdrawcdx.dir/chemdrawcdx.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dchemdrawcdx_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/chemdrawcdx.dir/chemdrawcdx.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/chemdrawcdx.cpp --- src/CMakeFiles/plugin_fingerprints.dir/all --- [ 18%] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER 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--- Scanning dependencies of target cmlreactformat /usr/bin/make -f src/formats/CMakeFiles/cmlreactformat.dir/build.make src/formats/CMakeFiles/cmlreactformat.dir/build --- src/formats/CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.cpp.o --- [ 19%] Building CXX object src/formats/CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcmlreactformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/xml/cmlreactformat.cpp --- src/CMakeFiles/plugin_ops.dir/all --- Scanning dependencies of target plugin_ops /usr/bin/make -f src/CMakeFiles/plugin_ops.dir/build.make src/CMakeFiles/plugin_ops.dir/build --- src/CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o --- --- src/CMakeFiles/plugin_charges.dir/all --- Scanning dependencies of target plugin_charges /usr/bin/make -f src/CMakeFiles/plugin_charges.dir/build.make src/CMakeFiles/plugin_charges.dir/build --- src/CMakeFiles/plugin_ops.dir/all --- [ 19%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/ops/addfilename.cpp --- src/CMakeFiles/plugin_charges.dir/all --- --- src/CMakeFiles/plugin_charges.dir/charges/eem.cpp.o --- [ 19%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/eem.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/plugin_charges.dir/charges/eem.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/charges/eem.cpp --- src/CMakeFiles/plugin_descriptors.dir/all --- --- src/CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o --- [ 20%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/descriptors/cmpdfilter.cpp --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o --- [ 20%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/ops/addinindex.cpp --- src/formats/CMakeFiles/xmlformat.dir/all --- --- src/formats/CMakeFiles/xmlformat.dir/xml/xml.cpp.o --- [ 20%] Building CXX object src/formats/CMakeFiles/xmlformat.dir/xml/xml.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dxmlformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/xmlformat.dir/xml/xml.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/xml/xml.cpp --- src/CMakeFiles/plugin_descriptors.dir/all --- --- src/CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o --- [ 20%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/descriptors/groupcontrib.cpp --- src/formats/CMakeFiles/rinchiformat.dir/all --- --- lib/rinchiformat.so --- [ 20%] Linking CXX shared module ../../lib/rinchiformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rinchiformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/rinchiformat.so CMakeFiles/rinchiformat.dir/rinchiformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 21%] Built target rinchiformat --- src/formats/CMakeFiles/chemdoodlejsonformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/chemdoodlejsonformat.dir/build.make src/formats/CMakeFiles/chemdoodlejsonformat.dir/depend --- src/formats/CMakeFiles/chemdoodlejsonformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/chemdoodlejsonformat.dir/DependInfo.cmake Scanning dependencies of target chemdoodlejsonformat /usr/bin/make -f src/formats/CMakeFiles/chemdoodlejsonformat.dir/build.make src/formats/CMakeFiles/chemdoodlejsonformat.dir/build --- src/formats/CMakeFiles/chemdoodlejsonformat.dir/json/chemdoodlejsonformat.cpp.o --- [ 21%] Building CXX object src/formats/CMakeFiles/chemdoodlejsonformat.dir/json/chemdoodlejsonformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dchemdoodlejsonformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/chemdoodlejsonformat.dir/json/chemdoodlejsonformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/json/chemdoodlejsonformat.cpp --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o --- [ 21%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/ops/addpolarh.cpp --- src/CMakeFiles/plugin_charges.dir/all --- --- src/CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o --- [ 21%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/charges/gasteiger.cpp --- src/CMakeFiles/plugin_fingerprints.dir/all --- --- src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o --- [ 21%] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/fingerprints/finger3.cpp --- src/formats/CMakeFiles/xmlformat.dir/all --- --- lib/xmlformat.so --- [ 22%] Linking CXX shared module ../../lib/xmlformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/xmlformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/xmlformat.so CMakeFiles/xmlformat.dir/xml/xmlformat.cpp.o CMakeFiles/xmlformat.dir/xml/xml.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm /usr/local/lib/libxml2.so ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 22%] Built target xmlformat --- src/formats/CMakeFiles/xyzformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/xyzformat.dir/build.make src/formats/CMakeFiles/xyzformat.dir/depend --- src/formats/CMakeFiles/xyzformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/xyzformat.dir/DependInfo.cmake Scanning dependencies of target xyzformat /usr/bin/make -f src/formats/CMakeFiles/xyzformat.dir/build.make src/formats/CMakeFiles/xyzformat.dir/build --- src/formats/CMakeFiles/xyzformat.dir/xyzformat.cpp.o --- [ 22%] Building CXX object src/formats/CMakeFiles/xyzformat.dir/xyzformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dxyzformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/xyzformat.dir/xyzformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/xyzformat.cpp --- src/CMakeFiles/plugin_charges.dir/all --- --- src/CMakeFiles/plugin_charges.dir/charges/none.cpp.o --- [ 22%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/none.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/plugin_charges.dir/charges/none.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/charges/none.cpp --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o --- [ 23%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/ops/addnonpolarh.cpp --- src/CMakeFiles/plugin_descriptors.dir/all --- --- src/CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o --- [ 23%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/descriptors/filters.cpp --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o --- [ 23%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/ops/canonical.cpp --- src/CMakeFiles/plugin_charges.dir/all --- --- src/CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o --- [ 23%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/charges/mmff94.cpp --- src/formats/CMakeFiles/chemdrawcdx.dir/all --- --- lib/chemdrawcdx.so --- [ 23%] Linking CXX shared module ../../lib/chemdrawcdx.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/chemdrawcdx.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/chemdrawcdx.so CMakeFiles/chemdrawcdx.dir/chemdrawcdx.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 23%] Built target chemdrawcdx --- src/formats/CMakeFiles/viewmolformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/viewmolformat.dir/build.make src/formats/CMakeFiles/viewmolformat.dir/depend --- src/formats/CMakeFiles/viewmolformat.dir/depend --- --- src/formats/CMakeFiles/cmlreactformat.dir/all --- --- src/formats/CMakeFiles/cmlreactformat.dir/xml/xml.cpp.o --- --- src/formats/CMakeFiles/viewmolformat.dir/all --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/viewmolformat.dir/DependInfo.cmake --- src/formats/CMakeFiles/cmlreactformat.dir/all --- [ 23%] Building CXX object src/formats/CMakeFiles/cmlreactformat.dir/xml/xml.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcmlreactformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/cmlreactformat.dir/xml/xml.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/xml/xml.cpp --- src/formats/CMakeFiles/viewmolformat.dir/all --- Scanning dependencies of target viewmolformat /usr/bin/make -f src/formats/CMakeFiles/viewmolformat.dir/build.make src/formats/CMakeFiles/viewmolformat.dir/build --- src/formats/CMakeFiles/viewmolformat.dir/viewmolformat.cpp.o --- [ 23%] Building CXX object src/formats/CMakeFiles/viewmolformat.dir/viewmolformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN 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src/formats/CMakeFiles/yasaraformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/yasaraformat.dir/DependInfo.cmake Scanning dependencies of target yasaraformat /usr/bin/make -f src/formats/CMakeFiles/yasaraformat.dir/build.make src/formats/CMakeFiles/yasaraformat.dir/build --- src/formats/CMakeFiles/yasaraformat.dir/yasaraformat.cpp.o --- [ 24%] Building CXX object src/formats/CMakeFiles/yasaraformat.dir/yasaraformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dyasaraformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/yasaraformat.dir/yasaraformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/yasaraformat.cpp --- src/CMakeFiles/plugin_fingerprints.dir/all --- --- src/CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o --- [ 24%] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/fingerprints/fingerecfp.cpp --- src/CMakeFiles/plugin_descriptors.dir/all --- --- src/CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o --- [ 24%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/descriptors/inchidescriptor.cpp --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o --- [ 24%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o --- src/formats/CMakeFiles/viewmolformat.dir/all --- --- lib/viewmolformat.so --- --- src/CMakeFiles/plugin_ops.dir/all --- cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread 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-lm -ldl -lz -pthread [ 24%] Built target viewmolformat --- src/formats/CMakeFiles/pdbqtformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/pdbqtformat.dir/build.make src/formats/CMakeFiles/pdbqtformat.dir/depend --- src/formats/CMakeFiles/pdbqtformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/pdbqtformat.dir/DependInfo.cmake Scanning dependencies of target pdbqtformat /usr/bin/make -f src/formats/CMakeFiles/pdbqtformat.dir/build.make src/formats/CMakeFiles/pdbqtformat.dir/build --- src/formats/CMakeFiles/pdbqtformat.dir/pdbqtformat.cpp.o --- [ 24%] Building CXX object src/formats/CMakeFiles/pdbqtformat.dir/pdbqtformat.cpp.o cd 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src/formats/CMakeFiles/yasaraformat.dir/all --- --- lib/yasaraformat.so --- [ 24%] Linking CXX shared module ../../lib/yasaraformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/yasaraformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/yasaraformat.so CMakeFiles/yasaraformat.dir/yasaraformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 24%] Built target yasaraformat --- src/formats/CMakeFiles/pcmodelformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/pcmodelformat.dir/build.make src/formats/CMakeFiles/pcmodelformat.dir/depend --- src/formats/CMakeFiles/pcmodelformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/pcmodelformat.dir/DependInfo.cmake Scanning dependencies of target pcmodelformat /usr/bin/make -f src/formats/CMakeFiles/pcmodelformat.dir/build.make src/formats/CMakeFiles/pcmodelformat.dir/build --- src/formats/CMakeFiles/pcmodelformat.dir/pcmodelformat.cpp.o --- [ 25%] Building CXX object src/formats/CMakeFiles/pcmodelformat.dir/pcmodelformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpcmodelformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/pcmodelformat.dir/pcmodelformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/pcmodelformat.cpp --- src/formats/CMakeFiles/cmlreactformat.dir/all --- --- lib/cmlreactformat.so --- [ 25%] Linking CXX shared module ../../lib/cmlreactformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/cmlreactformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/cmlreactformat.so CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.cpp.o CMakeFiles/cmlreactformat.dir/xml/xml.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm /usr/local/lib/libxml2.so ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 25%] Built target cmlreactformat --- src/formats/CMakeFiles/outformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/outformat.dir/build.make src/formats/CMakeFiles/outformat.dir/depend --- src/formats/CMakeFiles/outformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/outformat.dir/DependInfo.cmake Scanning dependencies of target outformat /usr/bin/make -f src/formats/CMakeFiles/outformat.dir/build.make src/formats/CMakeFiles/outformat.dir/build --- src/formats/CMakeFiles/outformat.dir/outformat.cpp.o --- [ 26%] Building CXX object src/formats/CMakeFiles/outformat.dir/outformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Doutformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/outformat.dir/outformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/outformat.cpp --- src/CMakeFiles/plugin_charges.dir/all --- --- src/CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o --- [ 26%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/charges/fromfile.cpp --- src/CMakeFiles/plugin_descriptors.dir/all --- --- src/CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o --- [ 26%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/descriptors/smartsdescriptors.cpp --- src/formats/CMakeFiles/cmlformat.dir/all --- --- src/formats/CMakeFiles/cmlformat.dir/xml/xml.cpp.o --- [ 26%] Building CXX object src/formats/CMakeFiles/cmlformat.dir/xml/xml.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcmlformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/cmlformat.dir/xml/xml.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/xml/xml.cpp --- src/formats/CMakeFiles/pcmodelformat.dir/all --- --- lib/pcmodelformat.so --- [ 26%] Linking CXX shared module ../../lib/pcmodelformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/pcmodelformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/pcmodelformat.so CMakeFiles/pcmodelformat.dir/pcmodelformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 26%] Built target pcmodelformat --- src/formats/CMakeFiles/opendxformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/opendxformat.dir/build.make src/formats/CMakeFiles/opendxformat.dir/depend --- src/formats/CMakeFiles/opendxformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/opendxformat.dir/DependInfo.cmake Scanning dependencies of target opendxformat /usr/bin/make -f src/formats/CMakeFiles/opendxformat.dir/build.make src/formats/CMakeFiles/opendxformat.dir/build --- src/formats/CMakeFiles/opendxformat.dir/opendxformat.cpp.o --- [ 26%] Building CXX object src/formats/CMakeFiles/opendxformat.dir/opendxformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dopendxformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/opendxformat.dir/opendxformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/opendxformat.cpp --- src/CMakeFiles/plugin_fingerprints.dir/all --- --- lib/plugin_fingerprints.so --- [ 26%] Linking CXX shared module ../lib/plugin_fingerprints.so cd /construction/science/openbabel/.build/src && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/plugin_fingerprints.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../lib/plugin_fingerprints.so CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz ../lib/libopenbabel.so.7.0.0 /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread --- src/CMakeFiles/plugin_forcefields.dir/all --- --- src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o --- --- src/CMakeFiles/plugin_fingerprints.dir/all --- [ 26%] Built target plugin_fingerprints --- src/formats/CMakeFiles/rsmiformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/rsmiformat.dir/build.make src/formats/CMakeFiles/rsmiformat.dir/depend --- src/CMakeFiles/plugin_forcefields.dir/all --- [ 26%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/forcefields/forcefieldghemical.cpp --- src/formats/CMakeFiles/rsmiformat.dir/all --- --- src/formats/CMakeFiles/rsmiformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/rsmiformat.dir/DependInfo.cmake Scanning dependencies of target rsmiformat /usr/bin/make -f src/formats/CMakeFiles/rsmiformat.dir/build.make src/formats/CMakeFiles/rsmiformat.dir/build --- src/formats/CMakeFiles/rsmiformat.dir/rsmiformat.cpp.o --- [ 26%] Building CXX object src/formats/CMakeFiles/rsmiformat.dir/rsmiformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Drsmiformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/rsmiformat.dir/rsmiformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/rsmiformat.cpp --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o --- [ 26%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/ops/delpolarh.cpp --- src/formats/CMakeFiles/outformat.dir/all --- --- lib/outformat.so --- [ 26%] Linking CXX shared module ../../lib/outformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/outformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/outformat.so CMakeFiles/outformat.dir/outformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 26%] Built target outformat --- src/formats/CMakeFiles/msmsformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/msmsformat.dir/build.make src/formats/CMakeFiles/msmsformat.dir/depend --- src/formats/CMakeFiles/msmsformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/msmsformat.dir/DependInfo.cmake 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-fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/msmsformat.dir/msmsformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/msmsformat.cpp --- src/formats/CMakeFiles/cmlformat.dir/all --- --- lib/cmlformat.so --- [ 27%] Linking CXX shared module ../../lib/cmlformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/cmlformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/cmlformat.so CMakeFiles/cmlformat.dir/xml/cmlformat.cpp.o CMakeFiles/cmlformat.dir/xml/xml.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm /usr/local/lib/libxml2.so ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread --- src/CMakeFiles/plugin_descriptors.dir/all --- --- lib/plugin_descriptors.so --- [ 27%] Linking CXX shared module ../lib/plugin_descriptors.so cd /construction/science/openbabel/.build/src && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/plugin_descriptors.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../lib/plugin_descriptors.so CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz ../lib/libopenbabel.so.7.0.0 /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread --- src/formats/CMakeFiles/cmlformat.dir/all --- [ 27%] Built target cmlformat --- src/formats/CMakeFiles/msiformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/msiformat.dir/build.make src/formats/CMakeFiles/msiformat.dir/depend --- src/formats/CMakeFiles/msiformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/msiformat.dir/DependInfo.cmake Scanning dependencies of target msiformat /usr/bin/make -f src/formats/CMakeFiles/msiformat.dir/build.make src/formats/CMakeFiles/msiformat.dir/build --- src/formats/CMakeFiles/msiformat.dir/msiformat.cpp.o --- [ 27%] Building CXX object src/formats/CMakeFiles/msiformat.dir/msiformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmsiformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/msiformat.dir/msiformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/msiformat.cpp --- src/CMakeFiles/plugin_descriptors.dir/all --- [ 27%] Built target plugin_descriptors --- src/formats/CMakeFiles/mpqcformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/mpqcformat.dir/build.make src/formats/CMakeFiles/mpqcformat.dir/depend --- src/formats/CMakeFiles/mpqcformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/mpqcformat.dir/DependInfo.cmake Scanning dependencies of target mpqcformat /usr/bin/make -f src/formats/CMakeFiles/mpqcformat.dir/build.make src/formats/CMakeFiles/mpqcformat.dir/build --- src/formats/CMakeFiles/mpqcformat.dir/mpqcformat.cpp.o --- [ 27%] Building CXX object src/formats/CMakeFiles/mpqcformat.dir/mpqcformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmpqcformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/mpqcformat.dir/mpqcformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/mpqcformat.cpp --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o --- [ 27%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/ops/delnonpolarh.cpp --- src/CMakeFiles/plugin_charges.dir/all --- --- src/CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o --- [ 28%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/charges/eqeq.cpp --- src/formats/CMakeFiles/opendxformat.dir/all --- --- lib/opendxformat.so --- [ 28%] Linking CXX shared module ../../lib/opendxformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/opendxformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/opendxformat.so CMakeFiles/opendxformat.dir/opendxformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 28%] Built target opendxformat --- src/formats/CMakeFiles/mpdformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/mpdformat.dir/build.make src/formats/CMakeFiles/mpdformat.dir/depend --- src/formats/CMakeFiles/mpdformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/mpdformat.dir/DependInfo.cmake Scanning dependencies of target mpdformat /usr/bin/make -f src/formats/CMakeFiles/mpdformat.dir/build.make src/formats/CMakeFiles/mpdformat.dir/build --- src/formats/CMakeFiles/mpdformat.dir/mpdformat.cpp.o --- [ 28%] Building CXX object src/formats/CMakeFiles/mpdformat.dir/mpdformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmpdformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/mpdformat.dir/mpdformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/mpdformat.cpp --- src/formats/CMakeFiles/msmsformat.dir/all --- --- lib/msmsformat.so --- [ 28%] Linking CXX shared module ../../lib/msmsformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/msmsformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/msmsformat.so CMakeFiles/msmsformat.dir/msmsformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 28%] Built target msmsformat --- src/formats/CMakeFiles/pointcloudformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/pointcloudformat.dir/build.make src/formats/CMakeFiles/pointcloudformat.dir/depend --- src/formats/CMakeFiles/pointcloudformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/pointcloudformat.dir/DependInfo.cmake Scanning dependencies of target pointcloudformat /usr/bin/make -f src/formats/CMakeFiles/pointcloudformat.dir/build.make src/formats/CMakeFiles/pointcloudformat.dir/build --- src/formats/CMakeFiles/pointcloudformat.dir/pointcloudformat.cpp.o --- [ 28%] Building CXX object src/formats/CMakeFiles/pointcloudformat.dir/pointcloudformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpointcloudformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/pointcloudformat.dir/pointcloudformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/pointcloudformat.cpp --- src/formats/CMakeFiles/mpqcformat.dir/all --- --- lib/mpqcformat.so --- [ 28%] Linking CXX shared module ../../lib/mpqcformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/mpqcformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/mpqcformat.so CMakeFiles/mpqcformat.dir/mpqcformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 28%] Built target mpqcformat --- src/formats/CMakeFiles/mmcifformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/mmcifformat.dir/build.make src/formats/CMakeFiles/mmcifformat.dir/depend --- src/formats/CMakeFiles/mmcifformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/mmcifformat.dir/DependInfo.cmake Scanning dependencies of target mmcifformat /usr/bin/make -f src/formats/CMakeFiles/mmcifformat.dir/build.make src/formats/CMakeFiles/mmcifformat.dir/build --- src/formats/CMakeFiles/mmcifformat.dir/mmcifformat.cpp.o --- [ 28%] Building CXX object src/formats/CMakeFiles/mmcifformat.dir/mmcifformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmmcifformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/mmcifformat.dir/mmcifformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/mmcifformat.cpp --- src/formats/CMakeFiles/rsmiformat.dir/all --- --- lib/rsmiformat.so --- [ 28%] Linking CXX shared module ../../lib/rsmiformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rsmiformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/rsmiformat.so CMakeFiles/rsmiformat.dir/rsmiformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 28%] Built target rsmiformat --- src/formats/CMakeFiles/mdffformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/mdffformat.dir/build.make src/formats/CMakeFiles/mdffformat.dir/depend --- src/formats/CMakeFiles/mdffformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/mdffformat.dir/DependInfo.cmake Scanning dependencies of target mdffformat /usr/bin/make -f src/formats/CMakeFiles/mdffformat.dir/build.make src/formats/CMakeFiles/mdffformat.dir/build --- src/formats/CMakeFiles/mdffformat.dir/mdffformat.cpp.o --- [ 28%] Building CXX object src/formats/CMakeFiles/mdffformat.dir/mdffformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmdffformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/mdffformat.dir/mdffformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/mdffformat.cpp --- src/formats/CMakeFiles/mpdformat.dir/all --- --- lib/mpdformat.so --- [ 28%] Linking CXX shared module ../../lib/mpdformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/mpdformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/mpdformat.so CMakeFiles/mpdformat.dir/mpdformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 29%] Built target mpdformat --- src/formats/CMakeFiles/xedformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/xedformat.dir/build.make src/formats/CMakeFiles/xedformat.dir/depend --- src/formats/CMakeFiles/xedformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/xedformat.dir/DependInfo.cmake Scanning dependencies of target xedformat /usr/bin/make -f src/formats/CMakeFiles/xedformat.dir/build.make src/formats/CMakeFiles/xedformat.dir/build --- src/formats/CMakeFiles/xedformat.dir/xedformat.cpp.o --- [ 29%] Building CXX object src/formats/CMakeFiles/xedformat.dir/xedformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dxedformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/xedformat.dir/xedformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/xedformat.cpp --- src/formats/CMakeFiles/chemdoodlejsonformat.dir/all --- --- lib/chemdoodlejsonformat.so --- [ 30%] Linking CXX shared module ../../lib/chemdoodlejsonformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/chemdoodlejsonformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/chemdoodlejsonformat.so CMakeFiles/chemdoodlejsonformat.dir/json/chemdoodlejsonformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 30%] Built target chemdoodlejsonformat --- src/formats/CMakeFiles/lpmdformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/lpmdformat.dir/build.make src/formats/CMakeFiles/lpmdformat.dir/depend --- src/formats/CMakeFiles/lpmdformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/lpmdformat.dir/DependInfo.cmake Scanning dependencies of target lpmdformat /usr/bin/make -f src/formats/CMakeFiles/lpmdformat.dir/build.make src/formats/CMakeFiles/lpmdformat.dir/build --- src/formats/CMakeFiles/lpmdformat.dir/lpmdformat.cpp.o --- [ 31%] Building CXX object src/formats/CMakeFiles/lpmdformat.dir/lpmdformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dlpmdformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/lpmdformat.dir/lpmdformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/lpmdformat.cpp --- src/formats/CMakeFiles/msiformat.dir/all --- --- lib/msiformat.so --- [ 31%] Linking CXX shared module ../../lib/msiformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/msiformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/msiformat.so CMakeFiles/msiformat.dir/msiformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 31%] Built target msiformat --- src/formats/CMakeFiles/gromos96format.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/gromos96format.dir/build.make src/formats/CMakeFiles/gromos96format.dir/depend --- src/formats/CMakeFiles/gromos96format.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/gromos96format.dir/DependInfo.cmake Scanning dependencies of target gromos96format /usr/bin/make -f src/formats/CMakeFiles/gromos96format.dir/build.make src/formats/CMakeFiles/gromos96format.dir/build --- src/formats/CMakeFiles/gromos96format.dir/gromos96format.cpp.o --- [ 32%] Building CXX object src/formats/CMakeFiles/gromos96format.dir/gromos96format.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgromos96format_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/gromos96format.dir/gromos96format.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/gromos96format.cpp --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o --- [ 32%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/ops/gen2D.cpp --- 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src/formats/CMakeFiles/ghemicalformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/ghemicalformat.dir/build.make src/formats/CMakeFiles/ghemicalformat.dir/depend --- src/formats/CMakeFiles/ghemicalformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/ghemicalformat.dir/DependInfo.cmake Scanning dependencies of target ghemicalformat /usr/bin/make -f src/formats/CMakeFiles/ghemicalformat.dir/build.make src/formats/CMakeFiles/ghemicalformat.dir/build --- src/formats/CMakeFiles/ghemicalformat.dir/ghemicalformat.cpp.o --- [ 33%] Building CXX object src/formats/CMakeFiles/ghemicalformat.dir/ghemicalformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dghemicalformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/ghemicalformat.dir/ghemicalformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/ghemicalformat.cpp --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o --- [ 33%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/ops/fillUC.cpp --- src/CMakeFiles/plugin_forcefields.dir/all --- --- src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o --- [ 34%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp --- src/formats/CMakeFiles/gromos96format.dir/all --- --- lib/gromos96format.so --- [ 34%] Linking CXX shared module ../../lib/gromos96format.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/gromos96format.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/gromos96format.so CMakeFiles/gromos96format.dir/gromos96format.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 34%] Built target gromos96format --- src/formats/CMakeFiles/pubchemjsonformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/pubchemjsonformat.dir/build.make src/formats/CMakeFiles/pubchemjsonformat.dir/depend --- src/formats/CMakeFiles/pubchemjsonformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/pubchemjsonformat.dir/DependInfo.cmake Scanning dependencies of target pubchemjsonformat /usr/bin/make -f src/formats/CMakeFiles/pubchemjsonformat.dir/build.make src/formats/CMakeFiles/pubchemjsonformat.dir/build --- src/formats/CMakeFiles/pubchemjsonformat.dir/json/pubchemjsonformat.cpp.o --- [ 35%] Building CXX object src/formats/CMakeFiles/pubchemjsonformat.dir/json/pubchemjsonformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpubchemjsonformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing 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/usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 36%] Built target pdbqtformat --- src/formats/CMakeFiles/gausszmatformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/gausszmatformat.dir/build.make src/formats/CMakeFiles/gausszmatformat.dir/depend --- src/formats/CMakeFiles/gausszmatformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/gausszmatformat.dir/DependInfo.cmake Scanning dependencies of target gausszmatformat /usr/bin/make -f src/formats/CMakeFiles/gausszmatformat.dir/build.make src/formats/CMakeFiles/gausszmatformat.dir/build --- src/formats/CMakeFiles/gausszmatformat.dir/gausszmatformat.cpp.o --- [ 36%] Building CXX object src/formats/CMakeFiles/gausszmatformat.dir/gausszmatformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgausszmatformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC 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/usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 36%] Built target xedformat --- src/formats/CMakeFiles/gausscubeformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/gausscubeformat.dir/build.make src/formats/CMakeFiles/gausscubeformat.dir/depend --- src/formats/CMakeFiles/gausscubeformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/gausscubeformat.dir/DependInfo.cmake Scanning dependencies of target gausscubeformat /usr/bin/make -f src/formats/CMakeFiles/gausscubeformat.dir/build.make src/formats/CMakeFiles/gausscubeformat.dir/build --- src/formats/CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o --- [ 36%] Building CXX object src/formats/CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgausscubeformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o -c 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36%] Built target ghemicalformat --- src/formats/CMakeFiles/adfformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/adfformat.dir/build.make src/formats/CMakeFiles/adfformat.dir/depend --- src/formats/CMakeFiles/adfformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/adfformat.dir/DependInfo.cmake Scanning dependencies of target adfformat /usr/bin/make -f src/formats/CMakeFiles/adfformat.dir/build.make src/formats/CMakeFiles/adfformat.dir/build --- src/formats/CMakeFiles/adfformat.dir/adfformat.cpp.o --- [ 36%] Building CXX object src/formats/CMakeFiles/adfformat.dir/adfformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ 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src/formats/CMakeFiles/cdxmlformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/cdxmlformat.dir/DependInfo.cmake Scanning dependencies of target cdxmlformat /usr/bin/make -f src/formats/CMakeFiles/cdxmlformat.dir/build.make src/formats/CMakeFiles/cdxmlformat.dir/build --- src/formats/CMakeFiles/cdxmlformat.dir/xml/cdxmlformat.cpp.o --- [ 37%] Building CXX object src/formats/CMakeFiles/cdxmlformat.dir/xml/cdxmlformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcdxmlformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/cdxmlformat.dir/xml/cdxmlformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/xml/cdxmlformat.cpp --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o --- [ 38%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ 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cmake_link_script CMakeFiles/gausszmatformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/gausszmatformat.so CMakeFiles/gausszmatformat.dir/gausszmatformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread --- src/formats/CMakeFiles/mmcifformat.dir/all --- --- lib/mmcifformat.so --- [ 38%] Linking CXX shared module ../../lib/mmcifformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/mmcifformat.dir/link.txt --verbose=1 --- src/formats/CMakeFiles/gausszmatformat.dir/all --- [ 39%] Built target gausszmatformat --- src/formats/CMakeFiles/daltonformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/daltonformat.dir/build.make src/formats/CMakeFiles/daltonformat.dir/depend --- src/formats/CMakeFiles/mmcifformat.dir/all --- /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/mmcifformat.so CMakeFiles/mmcifformat.dir/mmcifformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread --- src/formats/CMakeFiles/daltonformat.dir/all --- --- src/formats/CMakeFiles/daltonformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/daltonformat.dir/DependInfo.cmake Scanning dependencies of target daltonformat /usr/bin/make -f src/formats/CMakeFiles/daltonformat.dir/build.make src/formats/CMakeFiles/daltonformat.dir/build --- src/formats/CMakeFiles/daltonformat.dir/daltonformat.cpp.o --- [ 39%] Building CXX object src/formats/CMakeFiles/daltonformat.dir/daltonformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Ddaltonformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/daltonformat.dir/daltonformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/daltonformat.cpp --- src/formats/CMakeFiles/mmcifformat.dir/all --- [ 40%] Built target mmcifformat --- src/formats/CMakeFiles/asciiformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/asciiformat.dir/build.make src/formats/CMakeFiles/asciiformat.dir/depend --- src/formats/CMakeFiles/asciiformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/asciiformat.dir/DependInfo.cmake Scanning dependencies of target asciiformat /usr/bin/make -f src/formats/CMakeFiles/asciiformat.dir/build.make src/formats/CMakeFiles/asciiformat.dir/build --- src/formats/CMakeFiles/asciiformat.dir/asciiformat.cpp.o --- [ 40%] Building CXX object src/formats/CMakeFiles/asciiformat.dir/asciiformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dasciiformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/asciiformat.dir/asciiformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/asciiformat.cpp --- src/formats/CMakeFiles/lpmdformat.dir/all --- --- lib/lpmdformat.so --- [ 40%] Linking CXX shared module ../../lib/lpmdformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script 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/construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/rxnformat.dir/DependInfo.cmake Scanning dependencies of target rxnformat /usr/bin/make -f src/formats/CMakeFiles/rxnformat.dir/build.make src/formats/CMakeFiles/rxnformat.dir/build --- src/formats/CMakeFiles/rxnformat.dir/rxnformat.cpp.o --- [ 41%] Building CXX object src/formats/CMakeFiles/rxnformat.dir/rxnformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Drxnformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/rxnformat.dir/rxnformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/rxnformat.cpp --- src/formats/CMakeFiles/cdxmlformat.dir/all --- --- src/formats/CMakeFiles/cdxmlformat.dir/xml/xml.cpp.o --- [ 42%] Building CXX object src/formats/CMakeFiles/cdxmlformat.dir/xml/xml.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcdxmlformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/cdxmlformat.dir/xml/xml.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/xml/xml.cpp --- src/formats/CMakeFiles/asciiformat.dir/all --- --- src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o --- [ 42%] Building CXX object src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dasciiformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/depict/asciipainter.cpp --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o --- [ 42%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/ops/gen3d.cpp --- src/formats/CMakeFiles/gausscubeformat.dir/all --- --- lib/gausscubeformat.so --- [ 42%] Linking CXX shared module ../../lib/gausscubeformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/gausscubeformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/gausscubeformat.so CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 43%] Built target gausscubeformat --- src/formats/CMakeFiles/crystal09format.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/crystal09format.dir/build.make src/formats/CMakeFiles/crystal09format.dir/depend --- src/formats/CMakeFiles/crystal09format.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/crystal09format.dir/DependInfo.cmake Scanning dependencies of target crystal09format /usr/bin/make -f src/formats/CMakeFiles/crystal09format.dir/build.make src/formats/CMakeFiles/crystal09format.dir/build --- src/formats/CMakeFiles/crystal09format.dir/crystal09format.cpp.o --- [ 43%] Building CXX object src/formats/CMakeFiles/crystal09format.dir/crystal09format.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcrystal09format_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/crystal09format.dir/crystal09format.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/crystal09format.cpp --- src/formats/CMakeFiles/rxnformat.dir/all --- --- lib/rxnformat.so --- [ 43%] Linking CXX shared module ../../lib/rxnformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rxnformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/rxnformat.so CMakeFiles/rxnformat.dir/rxnformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread --- src/formats/CMakeFiles/daltonformat.dir/all --- --- lib/daltonformat.so --- [ 43%] Linking CXX shared module ../../lib/daltonformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/daltonformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/daltonformat.so CMakeFiles/daltonformat.dir/daltonformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread --- src/formats/CMakeFiles/rxnformat.dir/all --- [ 43%] Built target rxnformat --- src/formats/CMakeFiles/chemkinformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/chemkinformat.dir/build.make src/formats/CMakeFiles/chemkinformat.dir/depend --- src/formats/CMakeFiles/chemkinformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/chemkinformat.dir/DependInfo.cmake --- src/formats/CMakeFiles/daltonformat.dir/all --- [ 43%] Built target daltonformat --- src/formats/CMakeFiles/jaguarformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/jaguarformat.dir/build.make src/formats/CMakeFiles/jaguarformat.dir/depend --- src/formats/CMakeFiles/chemkinformat.dir/all --- Scanning dependencies of target chemkinformat /usr/bin/make -f src/formats/CMakeFiles/chemkinformat.dir/build.make src/formats/CMakeFiles/chemkinformat.dir/build --- src/formats/CMakeFiles/jaguarformat.dir/all --- --- src/formats/CMakeFiles/jaguarformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/jaguarformat.dir/DependInfo.cmake --- src/formats/CMakeFiles/chemkinformat.dir/all --- --- src/formats/CMakeFiles/chemkinformat.dir/chemkinformat.cpp.o --- --- src/formats/CMakeFiles/jaguarformat.dir/all --- Scanning dependencies of target jaguarformat /usr/bin/make -f src/formats/CMakeFiles/jaguarformat.dir/build.make src/formats/CMakeFiles/jaguarformat.dir/build --- src/formats/CMakeFiles/jaguarformat.dir/jaguarformat.cpp.o --- --- src/formats/CMakeFiles/chemkinformat.dir/all --- [ 43%] Building CXX object src/formats/CMakeFiles/chemkinformat.dir/chemkinformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dchemkinformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/chemkinformat.dir/chemkinformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/chemkinformat.cpp --- src/formats/CMakeFiles/jaguarformat.dir/all --- [ 43%] Building CXX object src/formats/CMakeFiles/jaguarformat.dir/jaguarformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Djaguarformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 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../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 43%] Built target asciiformat --- src/formats/CMakeFiles/aoforceformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/aoforceformat.dir/build.make src/formats/CMakeFiles/aoforceformat.dir/depend --- src/formats/CMakeFiles/aoforceformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/aoforceformat.dir/DependInfo.cmake Scanning dependencies of target aoforceformat /usr/bin/make -f src/formats/CMakeFiles/aoforceformat.dir/build.make src/formats/CMakeFiles/aoforceformat.dir/build --- src/formats/CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o --- [ 43%] Building CXX object src/formats/CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Daoforceformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/aoforceformat.cpp --- src/formats/CMakeFiles/adfformat.dir/all --- --- lib/adfformat.so --- [ 43%] Linking CXX shared module ../../lib/adfformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/adfformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/adfformat.so CMakeFiles/adfformat.dir/adfformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so 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-lm -ldl -lz -pthread --- src/formats/CMakeFiles/adfformat.dir/all --- [ 43%] Built target adfformat --- src/formats/CMakeFiles/pubchem.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/pubchem.dir/build.make src/formats/CMakeFiles/pubchem.dir/depend --- src/formats/CMakeFiles/pubchem.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/pubchem.dir/DependInfo.cmake --- src/formats/CMakeFiles/cdxmlformat.dir/all --- [ 43%] Built target cdxmlformat --- src/formats/CMakeFiles/turbomoleformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/turbomoleformat.dir/build.make src/formats/CMakeFiles/turbomoleformat.dir/depend --- src/formats/CMakeFiles/pubchem.dir/all --- Scanning dependencies of target pubchem --- src/formats/CMakeFiles/turbomoleformat.dir/all --- --- src/formats/CMakeFiles/turbomoleformat.dir/depend --- --- src/formats/CMakeFiles/pubchem.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/pubchem.dir/build.make src/formats/CMakeFiles/pubchem.dir/build --- src/formats/CMakeFiles/turbomoleformat.dir/all --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/turbomoleformat.dir/DependInfo.cmake Scanning dependencies of target turbomoleformat --- src/formats/CMakeFiles/pubchem.dir/all --- --- src/formats/CMakeFiles/pubchem.dir/xml/pubchem.cpp.o --- --- src/formats/CMakeFiles/turbomoleformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/turbomoleformat.dir/build.make src/formats/CMakeFiles/turbomoleformat.dir/build --- src/formats/CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o --- --- src/formats/CMakeFiles/pubchem.dir/all --- [ 43%] Building CXX object src/formats/CMakeFiles/pubchem.dir/xml/pubchem.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpubchem_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/pubchem.dir/xml/pubchem.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/xml/pubchem.cpp --- src/formats/CMakeFiles/turbomoleformat.dir/all --- [ 44%] Building CXX object src/formats/CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dturbomoleformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/turbomoleformat.cpp --- src/CMakeFiles/plugin_charges.dir/all --- --- src/CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o --- [ 44%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/charges/qeq.cpp --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/largest.cpp.o --- [ 44%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/largest.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/plugin_ops.dir/ops/largest.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/ops/largest.cpp --- src/formats/CMakeFiles/jaguarformat.dir/all --- --- lib/jaguarformat.so --- [ 44%] Linking CXX shared module ../../lib/jaguarformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/jaguarformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/jaguarformat.so CMakeFiles/jaguarformat.dir/jaguarformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 44%] Built target jaguarformat --- src/formats/CMakeFiles/abinitformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/abinitformat.dir/build.make src/formats/CMakeFiles/abinitformat.dir/depend --- src/formats/CMakeFiles/abinitformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/abinitformat.dir/DependInfo.cmake Scanning dependencies of target abinitformat /usr/bin/make -f src/formats/CMakeFiles/abinitformat.dir/build.make src/formats/CMakeFiles/abinitformat.dir/build --- src/formats/CMakeFiles/abinitformat.dir/abinitformat.cpp.o --- [ 44%] Building CXX object src/formats/CMakeFiles/abinitformat.dir/abinitformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dabinitformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/abinitformat.dir/abinitformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/abinitformat.cpp --- src/formats/CMakeFiles/pubchemjsonformat.dir/all --- --- lib/pubchemjsonformat.so --- [ 44%] Linking CXX shared module ../../lib/pubchemjsonformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/pubchemjsonformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/pubchemjsonformat.so CMakeFiles/pubchemjsonformat.dir/json/pubchemjsonformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 44%] Built target pubchemjsonformat --- src/formats/CMakeFiles/acesformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/acesformat.dir/build.make src/formats/CMakeFiles/acesformat.dir/depend --- src/formats/CMakeFiles/acesformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/acesformat.dir/DependInfo.cmake Scanning dependencies of target acesformat /usr/bin/make -f src/formats/CMakeFiles/acesformat.dir/build.make src/formats/CMakeFiles/acesformat.dir/build --- src/formats/CMakeFiles/acesformat.dir/acesformat.cpp.o --- [ 44%] Building CXX object src/formats/CMakeFiles/acesformat.dir/acesformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dacesformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/acesformat.dir/acesformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/acesformat.cpp --- src/formats/CMakeFiles/pubchem.dir/all --- --- src/formats/CMakeFiles/pubchem.dir/xml/xml.cpp.o --- [ 44%] Building CXX object src/formats/CMakeFiles/pubchem.dir/xml/xml.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpubchem_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/pubchem.dir/xml/xml.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/xml/xml.cpp --- src/formats/CMakeFiles/turbomoleformat.dir/all --- --- lib/turbomoleformat.so --- [ 44%] Linking CXX shared module ../../lib/turbomoleformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/turbomoleformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/turbomoleformat.so CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 44%] Built target turbomoleformat --- src/formats/CMakeFiles/alchemyformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/alchemyformat.dir/build.make src/formats/CMakeFiles/alchemyformat.dir/depend --- src/formats/CMakeFiles/alchemyformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/alchemyformat.dir/DependInfo.cmake Scanning dependencies of target alchemyformat /usr/bin/make -f src/formats/CMakeFiles/alchemyformat.dir/build.make src/formats/CMakeFiles/alchemyformat.dir/build --- src/formats/CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o --- [ 45%] Building CXX object src/formats/CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dalchemyformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/alchemyformat.cpp --- src/formats/CMakeFiles/aoforceformat.dir/all --- --- lib/aoforceformat.so --- [ 46%] Linking CXX shared module ../../lib/aoforceformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/aoforceformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/aoforceformat.so CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 46%] Built target aoforceformat --- src/formats/CMakeFiles/smilesformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/smilesformat.dir/build.make src/formats/CMakeFiles/smilesformat.dir/depend --- src/formats/CMakeFiles/smilesformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/smilesformat.dir/DependInfo.cmake Scanning dependencies of target smilesformat /usr/bin/make -f src/formats/CMakeFiles/smilesformat.dir/build.make src/formats/CMakeFiles/smilesformat.dir/build --- src/formats/CMakeFiles/smilesformat.dir/smilesformat.cpp.o --- [ 46%] Building CXX object src/formats/CMakeFiles/smilesformat.dir/smilesformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dsmilesformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/smilesformat.dir/smilesformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/smilesformat.cpp --- src/formats/CMakeFiles/crystal09format.dir/all --- --- lib/crystal09format.so --- [ 46%] Linking CXX shared module ../../lib/crystal09format.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/crystal09format.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/crystal09format.so CMakeFiles/crystal09format.dir/crystal09format.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 46%] Built target crystal09format --- src/formats/CMakeFiles/CSRformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/CSRformat.dir/build.make src/formats/CMakeFiles/CSRformat.dir/depend --- src/formats/CMakeFiles/CSRformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/CSRformat.dir/DependInfo.cmake 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-fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/CSRformat.dir/CSRformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/CSRformat.cpp --- src/formats/CMakeFiles/abinitformat.dir/all --- --- lib/abinitformat.so --- [ 46%] Linking CXX shared module ../../lib/abinitformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/abinitformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/abinitformat.so CMakeFiles/abinitformat.dir/abinitformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 46%] Built target abinitformat --- src/formats/CMakeFiles/confabreport.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/confabreport.dir/build.make src/formats/CMakeFiles/confabreport.dir/depend --- src/formats/CMakeFiles/confabreport.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/confabreport.dir/DependInfo.cmake Scanning dependencies of target confabreport /usr/bin/make -f src/formats/CMakeFiles/confabreport.dir/build.make src/formats/CMakeFiles/confabreport.dir/build --- 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/usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 47%] Built target alchemyformat --- src/formats/CMakeFiles/pdbformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/pdbformat.dir/build.make src/formats/CMakeFiles/pdbformat.dir/depend --- src/formats/CMakeFiles/pdbformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/pdbformat.dir/DependInfo.cmake Scanning dependencies of target pdbformat /usr/bin/make -f src/formats/CMakeFiles/pdbformat.dir/build.make src/formats/CMakeFiles/pdbformat.dir/build --- src/formats/CMakeFiles/pdbformat.dir/pdbformat.cpp.o --- [ 47%] Building CXX object src/formats/CMakeFiles/pdbformat.dir/pdbformat.cpp.o cd 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src/CMakeFiles/plugin_forcefields.dir/all --- --- src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o --- [ 47%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/forcefields/forcefielduff.cpp --- src/formats/CMakeFiles/CSRformat.dir/all --- /construction/science/openbabel/openbabel-3.1.1/src/formats/CSRformat.cpp: In member function 'char* OpenBabel::CSRFormat::PadString(char*, int)': /construction/science/openbabel/openbabel-3.1.1/src/formats/CSRformat.cpp:192:12: warning: 'char* strncpy(char*, const char*, size_t)' specified bound depends on the length of the source argument [-Wstringop-overflow=] strncpy(output, input, strlen(input)); ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ --- lib/CSRformat.so --- [ 47%] Linking CXX shared module ../../lib/CSRformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/CSRformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/CSRformat.so CMakeFiles/CSRformat.dir/CSRformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 47%] Built target CSRformat --- src/formats/CMakeFiles/wlnformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/wlnformat.dir/build.make src/formats/CMakeFiles/wlnformat.dir/depend --- src/formats/CMakeFiles/wlnformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/wlnformat.dir/DependInfo.cmake Scanning dependencies of target wlnformat /usr/bin/make -f src/formats/CMakeFiles/wlnformat.dir/build.make src/formats/CMakeFiles/wlnformat.dir/build --- src/formats/CMakeFiles/wlnformat.dir/wlnformat.cpp.o --- [ 47%] Building CXX object src/formats/CMakeFiles/wlnformat.dir/wlnformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dwlnformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/wlnformat.dir/wlnformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/wlnformat.cpp --- src/formats/CMakeFiles/pubchem.dir/all --- --- lib/pubchem.so --- [ 47%] Linking CXX shared module ../../lib/pubchem.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/pubchem.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/pubchem.so CMakeFiles/pubchem.dir/xml/pubchem.cpp.o CMakeFiles/pubchem.dir/xml/xml.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm /usr/local/lib/libxml2.so ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 47%] Built target pubchem --- src/formats/CMakeFiles/painterformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/painterformat.dir/build.make src/formats/CMakeFiles/painterformat.dir/depend --- src/formats/CMakeFiles/painterformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/painterformat.dir/DependInfo.cmake Scanning dependencies of target painterformat /usr/bin/make -f src/formats/CMakeFiles/painterformat.dir/build.make src/formats/CMakeFiles/painterformat.dir/build --- src/formats/CMakeFiles/painterformat.dir/painterformat.cpp.o --- [ 47%] Building CXX object src/formats/CMakeFiles/painterformat.dir/painterformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpainterformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/painterformat.dir/painterformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/painterformat.cpp --- src/formats/CMakeFiles/wlnformat.dir/all --- --- src/formats/CMakeFiles/wlnformat.dir/wln-nextmove.cpp.o --- [ 47%] Building CXX object src/formats/CMakeFiles/wlnformat.dir/wln-nextmove.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dwlnformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/wlnformat.dir/wln-nextmove.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/wln-nextmove.cpp --- src/formats/CMakeFiles/acesformat.dir/all --- --- lib/acesformat.so --- [ 47%] Linking CXX shared module ../../lib/acesformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/acesformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/acesformat.so CMakeFiles/acesformat.dir/acesformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 48%] Built target acesformat --- src/formats/CMakeFiles/smileyformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/smileyformat.dir/build.make src/formats/CMakeFiles/smileyformat.dir/depend --- src/formats/CMakeFiles/smileyformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/smileyformat.dir/DependInfo.cmake Scanning dependencies of target smileyformat /usr/bin/make -f src/formats/CMakeFiles/smileyformat.dir/build.make src/formats/CMakeFiles/smileyformat.dir/build --- src/formats/CMakeFiles/smileyformat.dir/smileyformat.cpp.o --- [ 48%] Building CXX object src/formats/CMakeFiles/smileyformat.dir/smileyformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dsmileyformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/smileyformat.dir/smileyformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/smileyformat.cpp --- src/formats/CMakeFiles/confabreport.dir/all --- --- lib/confabreport.so --- [ 48%] Linking CXX shared module ../../lib/confabreport.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/confabreport.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/confabreport.so CMakeFiles/confabreport.dir/confabreport.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 48%] Built target confabreport --- src/formats/CMakeFiles/povrayformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/povrayformat.dir/build.make src/formats/CMakeFiles/povrayformat.dir/depend --- src/formats/CMakeFiles/povrayformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/povrayformat.dir/DependInfo.cmake Scanning dependencies of target povrayformat /usr/bin/make -f src/formats/CMakeFiles/povrayformat.dir/build.make src/formats/CMakeFiles/povrayformat.dir/build --- src/formats/CMakeFiles/povrayformat.dir/povrayformat.cpp.o --- [ 48%] Building CXX object src/formats/CMakeFiles/povrayformat.dir/povrayformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpovrayformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/povrayformat.dir/povrayformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/povrayformat.cpp --- src/formats/CMakeFiles/painterformat.dir/all --- --- src/formats/CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o --- [ 48%] Building CXX object src/formats/CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpainterformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/depict/commandpainter.cpp --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o --- [ 48%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/ops/neutralize.cpp --- src/formats/CMakeFiles/chemkinformat.dir/all --- --- lib/chemkinformat.so --- [ 48%] Linking CXX shared module ../../lib/chemkinformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/chemkinformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/chemkinformat.so CMakeFiles/chemkinformat.dir/chemkinformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 48%] Built target chemkinformat --- src/formats/CMakeFiles/shelxformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/shelxformat.dir/build.make src/formats/CMakeFiles/shelxformat.dir/depend --- src/formats/CMakeFiles/shelxformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/shelxformat.dir/DependInfo.cmake Scanning dependencies of target shelxformat /usr/bin/make -f src/formats/CMakeFiles/shelxformat.dir/build.make src/formats/CMakeFiles/shelxformat.dir/build --- src/formats/CMakeFiles/shelxformat.dir/shelxformat.cpp.o --- [ 48%] Building CXX object src/formats/CMakeFiles/shelxformat.dir/shelxformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dshelxformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/shelxformat.dir/shelxformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/shelxformat.cpp --- src/formats/CMakeFiles/painterformat.dir/all --- --- lib/painterformat.so --- [ 48%] Linking CXX shared module ../../lib/painterformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/painterformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/painterformat.so CMakeFiles/painterformat.dir/painterformat.cpp.o CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 48%] Built target painterformat --- src/formats/CMakeFiles/xsfformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/xsfformat.dir/build.make src/formats/CMakeFiles/xsfformat.dir/depend --- src/formats/CMakeFiles/xsfformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/xsfformat.dir/DependInfo.cmake Scanning dependencies of target xsfformat /usr/bin/make -f src/formats/CMakeFiles/xsfformat.dir/build.make src/formats/CMakeFiles/xsfformat.dir/build --- src/formats/CMakeFiles/xsfformat.dir/xsfformat.cpp.o --- [ 48%] Building CXX object src/formats/CMakeFiles/xsfformat.dir/xsfformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dxsfformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/xsfformat.dir/xsfformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/xsfformat.cpp --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o --- [ 48%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/ops/opsplit.cpp --- src/formats/CMakeFiles/shelxformat.dir/all --- --- lib/shelxformat.so --- [ 48%] Linking CXX shared module ../../lib/shelxformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/shelxformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/shelxformat.so CMakeFiles/shelxformat.dir/shelxformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 48%] Built target shelxformat --- src/formats/CMakeFiles/inchiformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/inchiformat.dir/build.make src/formats/CMakeFiles/inchiformat.dir/depend --- src/formats/CMakeFiles/inchiformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/inchiformat.dir/DependInfo.cmake Scanning dependencies of target inchiformat /usr/bin/make -f src/formats/CMakeFiles/inchiformat.dir/build.make src/formats/CMakeFiles/inchiformat.dir/build --- src/formats/CMakeFiles/inchiformat.dir/inchiformat.cpp.o --- [ 48%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/inchiformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dinchiformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/inchiformat.dir/inchiformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/inchiformat.cpp --- src/formats/CMakeFiles/wlnformat.dir/all --- --- lib/wlnformat.so --- [ 49%] Linking CXX shared module ../../lib/wlnformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/wlnformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/wlnformat.so CMakeFiles/wlnformat.dir/wlnformat.cpp.o CMakeFiles/wlnformat.dir/wln-nextmove.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 49%] Built target wlnformat --- src/formats/CMakeFiles/mdlformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/mdlformat.dir/build.make src/formats/CMakeFiles/mdlformat.dir/depend --- src/formats/CMakeFiles/mdlformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/mdlformat.dir/DependInfo.cmake Scanning dependencies of target mdlformat /usr/bin/make -f src/formats/CMakeFiles/mdlformat.dir/build.make src/formats/CMakeFiles/mdlformat.dir/build --- src/formats/CMakeFiles/mdlformat.dir/mdlformat.cpp.o --- [ 49%] Building CXX object src/formats/CMakeFiles/mdlformat.dir/mdlformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmdlformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/mdlformat.dir/mdlformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/mdlformat.cpp --- src/formats/CMakeFiles/povrayformat.dir/all --- --- lib/povrayformat.so --- [ 49%] Linking CXX shared module ../../lib/povrayformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/povrayformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/povrayformat.so CMakeFiles/povrayformat.dir/povrayformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 49%] Built target povrayformat --- src/formats/CMakeFiles/posformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/posformat.dir/build.make src/formats/CMakeFiles/posformat.dir/depend --- src/formats/CMakeFiles/posformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/posformat.dir/DependInfo.cmake Scanning dependencies of target posformat /usr/bin/make -f src/formats/CMakeFiles/posformat.dir/build.make src/formats/CMakeFiles/posformat.dir/build --- src/formats/CMakeFiles/posformat.dir/posformat.cpp.o --- [ 49%] Building CXX object src/formats/CMakeFiles/posformat.dir/posformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dposformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/posformat.dir/posformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/posformat.cpp --- src/formats/CMakeFiles/xsfformat.dir/all --- --- lib/xsfformat.so --- [ 49%] Linking CXX shared module ../../lib/xsfformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/xsfformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/xsfformat.so CMakeFiles/xsfformat.dir/xsfformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 49%] Built target xsfformat --- src/formats/CMakeFiles/lmpdatformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/lmpdatformat.dir/build.make src/formats/CMakeFiles/lmpdatformat.dir/depend --- src/formats/CMakeFiles/lmpdatformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/lmpdatformat.dir/DependInfo.cmake Scanning dependencies of target lmpdatformat /usr/bin/make -f src/formats/CMakeFiles/lmpdatformat.dir/build.make src/formats/CMakeFiles/lmpdatformat.dir/build --- src/formats/CMakeFiles/lmpdatformat.dir/lmpdatformat.cpp.o --- [ 49%] Building CXX object src/formats/CMakeFiles/lmpdatformat.dir/lmpdatformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dlmpdatformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/lmpdatformat.dir/lmpdatformat.cpp.o -c 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src/formats/CMakeFiles/fastsearchformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/fastsearchformat.dir/build.make src/formats/CMakeFiles/fastsearchformat.dir/depend --- src/formats/CMakeFiles/fastsearchformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/fastsearchformat.dir/DependInfo.cmake Scanning dependencies of target fastsearchformat /usr/bin/make -f src/formats/CMakeFiles/fastsearchformat.dir/build.make src/formats/CMakeFiles/fastsearchformat.dir/build --- src/formats/CMakeFiles/fastsearchformat.dir/fastsearchformat.cpp.o --- [ 49%] Building CXX object src/formats/CMakeFiles/fastsearchformat.dir/fastsearchformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfastsearchformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/fastsearchformat.dir/fastsearchformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/fastsearchformat.cpp --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o --- [ 49%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/ops/optransform.cpp --- src/formats/CMakeFiles/smileyformat.dir/all --- --- lib/smileyformat.so --- [ 49%] Linking CXX shared module ../../lib/smileyformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/smileyformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/smileyformat.so CMakeFiles/smileyformat.dir/smileyformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 50%] Built target smileyformat --- src/formats/CMakeFiles/thermoformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/thermoformat.dir/build.make src/formats/CMakeFiles/thermoformat.dir/depend --- src/formats/CMakeFiles/thermoformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/thermoformat.dir/DependInfo.cmake Scanning dependencies of target thermoformat /usr/bin/make -f src/formats/CMakeFiles/thermoformat.dir/build.make src/formats/CMakeFiles/thermoformat.dir/build --- src/formats/CMakeFiles/thermoformat.dir/thermoformat.cpp.o --- [ 50%] Building CXX object src/formats/CMakeFiles/thermoformat.dir/thermoformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dthermoformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/thermoformat.dir/thermoformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/thermoformat.cpp --- src/formats/CMakeFiles/posformat.dir/all --- --- lib/posformat.so --- [ 50%] Linking CXX shared module ../../lib/posformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/posformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/posformat.so CMakeFiles/posformat.dir/posformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 50%] Built target posformat --- src/formats/CMakeFiles/gulpformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/gulpformat.dir/build.make src/formats/CMakeFiles/gulpformat.dir/depend --- src/formats/CMakeFiles/gulpformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/gulpformat.dir/DependInfo.cmake Scanning dependencies of target gulpformat /usr/bin/make -f src/formats/CMakeFiles/gulpformat.dir/build.make src/formats/CMakeFiles/gulpformat.dir/build --- src/formats/CMakeFiles/gulpformat.dir/gulpformat.cpp.o --- [ 50%] Building CXX object src/formats/CMakeFiles/gulpformat.dir/gulpformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgulpformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/gulpformat.dir/gulpformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/gulpformat.cpp --- src/formats/CMakeFiles/lmpdatformat.dir/all --- --- lib/lmpdatformat.so --- [ 50%] Linking CXX shared module ../../lib/lmpdatformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/lmpdatformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/lmpdatformat.so CMakeFiles/lmpdatformat.dir/lmpdatformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 50%] Built target lmpdatformat --- src/formats/CMakeFiles/mmodformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/mmodformat.dir/build.make src/formats/CMakeFiles/mmodformat.dir/depend --- src/formats/CMakeFiles/mmodformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/mmodformat.dir/DependInfo.cmake Scanning dependencies of target mmodformat /usr/bin/make -f src/formats/CMakeFiles/mmodformat.dir/build.make src/formats/CMakeFiles/mmodformat.dir/build --- src/formats/CMakeFiles/mmodformat.dir/mmodformat.cpp.o --- [ 50%] Building CXX object src/formats/CMakeFiles/mmodformat.dir/mmodformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmmodformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/mmodformat.dir/mmodformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/mmodformat.cpp --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o --- [ 51%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/ops/partialcharges.cpp --- src/CMakeFiles/plugin_forcefields.dir/all --- --- lib/plugin_forcefields.so --- [ 51%] Linking CXX shared module ../lib/plugin_forcefields.so cd /construction/science/openbabel/.build/src && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/plugin_forcefields.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../lib/plugin_forcefields.so CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz ../lib/libopenbabel.so.7.0.0 /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 51%] Built target plugin_forcefields --- src/formats/CMakeFiles/mol2format.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/mol2format.dir/build.make src/formats/CMakeFiles/mol2format.dir/depend --- src/formats/CMakeFiles/mol2format.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/mol2format.dir/DependInfo.cmake Scanning dependencies of target mol2format /usr/bin/make -f src/formats/CMakeFiles/mol2format.dir/build.make src/formats/CMakeFiles/mol2format.dir/build --- src/formats/CMakeFiles/mol2format.dir/mol2format.cpp.o --- [ 51%] Building CXX object src/formats/CMakeFiles/mol2format.dir/mol2format.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS 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/construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dinchiformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/inchiformat.dir/getinchi.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/getinchi.cpp --- src/formats/CMakeFiles/thermoformat.dir/all --- --- lib/thermoformat.so --- [ 51%] Linking CXX shared module ../../lib/thermoformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/thermoformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/thermoformat.so CMakeFiles/thermoformat.dir/thermoformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 52%] Built target thermoformat --- src/formats/CMakeFiles/MNAformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/MNAformat.dir/build.make src/formats/CMakeFiles/MNAformat.dir/depend --- src/formats/CMakeFiles/MNAformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/MNAformat.dir/DependInfo.cmake Scanning dependencies of target MNAformat /usr/bin/make -f src/formats/CMakeFiles/MNAformat.dir/build.make src/formats/CMakeFiles/MNAformat.dir/build --- src/formats/CMakeFiles/MNAformat.dir/MNAformat.cpp.o --- [ 52%] Building CXX object src/formats/CMakeFiles/MNAformat.dir/MNAformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMNAformat_EXPORTS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/MNAformat.dir/MNAformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/MNAformat.cpp --- src/formats/CMakeFiles/gulpformat.dir/all --- --- lib/gulpformat.so --- [ 52%] Linking CXX shared module ../../lib/gulpformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/gulpformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/gulpformat.so CMakeFiles/gulpformat.dir/gulpformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 52%] Built target gulpformat --- src/formats/CMakeFiles/png2format.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/png2format.dir/build.make src/formats/CMakeFiles/png2format.dir/depend --- src/formats/CMakeFiles/png2format.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/png2format.dir/DependInfo.cmake Scanning dependencies of target png2format /usr/bin/make -f src/formats/CMakeFiles/png2format.dir/build.make src/formats/CMakeFiles/png2format.dir/build --- src/formats/CMakeFiles/png2format.dir/png2format.cpp.o --- --- src/formats/CMakeFiles/inchiformat.dir/all --- --- src/formats/CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o --- --- src/formats/CMakeFiles/png2format.dir/all --- [ 52%] Building CXX object src/formats/CMakeFiles/png2format.dir/png2format.cpp.o --- src/formats/CMakeFiles/inchiformat.dir/all --- [ 52%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o --- src/formats/CMakeFiles/png2format.dir/all --- cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpng2format_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/png2format.dir/png2format.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/png2format.cpp --- src/formats/CMakeFiles/inchiformat.dir/all --- cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dinchiformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o -c 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--- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o --- [ 52%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/ops/readconformers.cpp --- src/formats/CMakeFiles/fastsearchformat.dir/all --- [ 52%] Built target fastsearchformat --- src/formats/CMakeFiles/balstformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/balstformat.dir/build.make src/formats/CMakeFiles/balstformat.dir/depend --- src/formats/CMakeFiles/balstformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/balstformat.dir/DependInfo.cmake Scanning dependencies of target balstformat /usr/bin/make -f src/formats/CMakeFiles/balstformat.dir/build.make src/formats/CMakeFiles/balstformat.dir/build --- src/formats/CMakeFiles/balstformat.dir/balstformat.cpp.o --- [ 52%] Building CXX object src/formats/CMakeFiles/balstformat.dir/balstformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dbalstformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/balstformat.dir/balstformat.cpp.o -c 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--- src/formats/CMakeFiles/dmolformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/dmolformat.dir/build.make src/formats/CMakeFiles/dmolformat.dir/depend --- src/formats/CMakeFiles/dmolformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/dmolformat.dir/DependInfo.cmake Scanning dependencies of target dmolformat /usr/bin/make -f src/formats/CMakeFiles/dmolformat.dir/build.make src/formats/CMakeFiles/dmolformat.dir/build --- src/formats/CMakeFiles/dmolformat.dir/dmolformat.cpp.o --- [ 52%] Building CXX object src/formats/CMakeFiles/dmolformat.dir/dmolformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Ddmolformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/dmolformat.dir/dmolformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/dmolformat.cpp --- src/formats/CMakeFiles/MNAformat.dir/all --- --- lib/MNAformat.so --- [ 52%] Linking CXX shared module 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src/formats/CMakeFiles/castepformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/castepformat.dir/DependInfo.cmake Scanning dependencies of target castepformat /usr/bin/make -f src/formats/CMakeFiles/castepformat.dir/build.make src/formats/CMakeFiles/castepformat.dir/build --- src/formats/CMakeFiles/castepformat.dir/castepformat.cpp.o --- [ 53%] Building CXX object src/formats/CMakeFiles/castepformat.dir/castepformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcastepformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/castepformat.dir/castepformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/castepformat.cpp --- src/formats/CMakeFiles/smilesformat.dir/all --- --- lib/smilesformat.so --- [ 53%] Linking CXX shared module ../../lib/smilesformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/smilesformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/smilesformat.so CMakeFiles/smilesformat.dir/smilesformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 53%] Built target smilesformat --- src/formats/CMakeFiles/gamessukformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/gamessukformat.dir/build.make src/formats/CMakeFiles/gamessukformat.dir/depend --- src/formats/CMakeFiles/gamessukformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/gamessukformat.dir/DependInfo.cmake Scanning dependencies of target gamessukformat /usr/bin/make -f src/formats/CMakeFiles/gamessukformat.dir/build.make src/formats/CMakeFiles/gamessukformat.dir/build --- src/formats/CMakeFiles/gamessukformat.dir/gamessukformat.cpp.o --- [ 53%] Building CXX object src/formats/CMakeFiles/gamessukformat.dir/gamessukformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgamessukformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/gamessukformat.dir/gamessukformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/gamessukformat.cpp --- src/formats/CMakeFiles/balstformat.dir/all --- --- lib/balstformat.so --- [ 54%] Linking CXX shared module ../../lib/balstformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/balstformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/balstformat.so CMakeFiles/balstformat.dir/balstformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 54%] Built target balstformat --- src/formats/CMakeFiles/fpsformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/fpsformat.dir/build.make src/formats/CMakeFiles/fpsformat.dir/depend --- src/formats/CMakeFiles/fpsformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/fpsformat.dir/DependInfo.cmake --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/sort.cpp.o --- [ 54%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/sort.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/plugin_ops.dir/ops/sort.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/ops/sort.cpp --- src/formats/CMakeFiles/fpsformat.dir/all --- Scanning dependencies of target fpsformat /usr/bin/make -f src/formats/CMakeFiles/fpsformat.dir/build.make src/formats/CMakeFiles/fpsformat.dir/build --- src/formats/CMakeFiles/fpsformat.dir/fpsformat.cpp.o --- [ 55%] Building CXX object src/formats/CMakeFiles/fpsformat.dir/fpsformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfpsformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/fpsformat.dir/fpsformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/fpsformat.cpp --- src/formats/CMakeFiles/inchiformat.dir/all --- --- lib/inchiformat.so --- [ 55%] Linking CXX shared module ../../lib/inchiformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/inchiformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/inchiformat.so CMakeFiles/inchiformat.dir/inchiformat.cpp.o CMakeFiles/inchiformat.dir/getinchi.cpp.o CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 56%] Built target inchiformat --- src/formats/CMakeFiles/nulformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/nulformat.dir/build.make src/formats/CMakeFiles/nulformat.dir/depend --- src/formats/CMakeFiles/nulformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/nulformat.dir/DependInfo.cmake Scanning dependencies of target nulformat /usr/bin/make -f src/formats/CMakeFiles/nulformat.dir/build.make src/formats/CMakeFiles/nulformat.dir/build --- src/formats/CMakeFiles/nulformat.dir/nulformat.cpp.o --- [ 56%] Building CXX object src/formats/CMakeFiles/nulformat.dir/nulformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dnulformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/nulformat.dir/nulformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/nulformat.cpp --- src/formats/CMakeFiles/png2format.dir/all --- --- src/formats/CMakeFiles/png2format.dir/__/depict/cairopainter.cpp.o --- [ 56%] Building CXX object src/formats/CMakeFiles/png2format.dir/__/depict/cairopainter.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpng2format_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/png2format.dir/__/depict/cairopainter.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/depict/cairopainter.cpp --- src/formats/CMakeFiles/mol2format.dir/all --- --- lib/mol2format.so --- [ 56%] Linking CXX shared module ../../lib/mol2format.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/mol2format.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/mol2format.so CMakeFiles/mol2format.dir/mol2format.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 56%] Built target mol2format --- src/formats/CMakeFiles/gamessformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/gamessformat.dir/build.make src/formats/CMakeFiles/gamessformat.dir/depend --- src/formats/CMakeFiles/gamessformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/gamessformat.dir/DependInfo.cmake Scanning dependencies of target gamessformat /usr/bin/make -f src/formats/CMakeFiles/gamessformat.dir/build.make src/formats/CMakeFiles/gamessformat.dir/build --- src/formats/CMakeFiles/gamessformat.dir/gamessformat.cpp.o --- [ 56%] Building CXX object src/formats/CMakeFiles/gamessformat.dir/gamessformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgamessformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/gamessformat.dir/gamessformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/gamessformat.cpp --- src/formats/CMakeFiles/dmolformat.dir/all --- --- lib/dmolformat.so --- [ 56%] Linking CXX shared module ../../lib/dmolformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/dmolformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/dmolformat.so CMakeFiles/dmolformat.dir/dmolformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 56%] Built target dmolformat --- src/formats/CMakeFiles/unichemformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/unichemformat.dir/build.make src/formats/CMakeFiles/unichemformat.dir/depend --- src/formats/CMakeFiles/unichemformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/unichemformat.dir/DependInfo.cmake Scanning dependencies of target unichemformat /usr/bin/make -f src/formats/CMakeFiles/unichemformat.dir/build.make src/formats/CMakeFiles/unichemformat.dir/build --- src/formats/CMakeFiles/unichemformat.dir/unichemformat.cpp.o --- [ 56%] Building CXX object src/formats/CMakeFiles/unichemformat.dir/unichemformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dunichemformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/unichemformat.dir/unichemformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/unichemformat.cpp --- src/formats/CMakeFiles/mdlformat.dir/all --- --- lib/mdlformat.so --- [ 56%] Linking CXX shared module ../../lib/mdlformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/mdlformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/mdlformat.so CMakeFiles/mdlformat.dir/mdlformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 56%] Built target mdlformat --- src/formats/CMakeFiles/molreport.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/molreport.dir/build.make src/formats/CMakeFiles/molreport.dir/depend --- src/formats/CMakeFiles/molreport.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/molreport.dir/DependInfo.cmake Scanning dependencies of target molreport /usr/bin/make -f src/formats/CMakeFiles/molreport.dir/build.make src/formats/CMakeFiles/molreport.dir/build --- src/formats/CMakeFiles/molreport.dir/molreport.cpp.o --- [ 56%] Building CXX object src/formats/CMakeFiles/molreport.dir/molreport.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmolreport_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/molreport.dir/molreport.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/molreport.cpp --- src/formats/CMakeFiles/nulformat.dir/all --- --- lib/nulformat.so --- [ 56%] Linking CXX shared module ../../lib/nulformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/nulformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/nulformat.so CMakeFiles/nulformat.dir/nulformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 56%] Built target nulformat --- src/formats/CMakeFiles/stlformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/stlformat.dir/build.make src/formats/CMakeFiles/stlformat.dir/depend --- src/formats/CMakeFiles/stlformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/stlformat.dir/DependInfo.cmake Scanning dependencies of target stlformat /usr/bin/make -f src/formats/CMakeFiles/stlformat.dir/build.make src/formats/CMakeFiles/stlformat.dir/build --- src/formats/CMakeFiles/stlformat.dir/stlformat.cpp.o --- [ 56%] Building CXX object src/formats/CMakeFiles/stlformat.dir/stlformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dstlformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/stlformat.dir/stlformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/stlformat.cpp --- src/formats/CMakeFiles/png2format.dir/all --- --- lib/png2format.so --- [ 56%] Linking CXX shared module ../../lib/png2format.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/png2format.dir/link.txt --verbose=1 --- src/formats/CMakeFiles/castepformat.dir/all --- --- lib/castepformat.so --- --- src/formats/CMakeFiles/png2format.dir/all --- /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/png2format.so CMakeFiles/png2format.dir/png2format.cpp.o CMakeFiles/png2format.dir/__/depict/cairopainter.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread --- src/formats/CMakeFiles/castepformat.dir/all --- [ 56%] Linking CXX shared module ../../lib/castepformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/castepformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/castepformat.so CMakeFiles/castepformat.dir/castepformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread --- src/formats/CMakeFiles/png2format.dir/all --- [ 57%] Built target png2format --- src/formats/CMakeFiles/titleformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/titleformat.dir/build.make src/formats/CMakeFiles/titleformat.dir/depend --- src/formats/CMakeFiles/castepformat.dir/all --- [ 57%] Built target castepformat --- src/formats/CMakeFiles/mopacformat.dir/all --- --- src/formats/CMakeFiles/titleformat.dir/all --- --- src/formats/CMakeFiles/titleformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/titleformat.dir/DependInfo.cmake --- src/formats/CMakeFiles/mopacformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/mopacformat.dir/build.make src/formats/CMakeFiles/mopacformat.dir/depend --- src/formats/CMakeFiles/mopacformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/mopacformat.dir/DependInfo.cmake --- src/formats/CMakeFiles/titleformat.dir/all --- Scanning dependencies of target titleformat /usr/bin/make -f src/formats/CMakeFiles/titleformat.dir/build.make src/formats/CMakeFiles/titleformat.dir/build --- src/formats/CMakeFiles/titleformat.dir/titleformat.cpp.o --- --- src/formats/CMakeFiles/mopacformat.dir/all --- Scanning dependencies of target mopacformat /usr/bin/make -f src/formats/CMakeFiles/mopacformat.dir/build.make src/formats/CMakeFiles/mopacformat.dir/build --- src/formats/CMakeFiles/mopacformat.dir/mopacformat.cpp.o --- [ 57%] Building CXX object src/formats/CMakeFiles/mopacformat.dir/mopacformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmopacformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/mopacformat.dir/mopacformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/mopacformat.cpp --- src/formats/CMakeFiles/titleformat.dir/all --- [ 57%] Building CXX object src/formats/CMakeFiles/titleformat.dir/titleformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dtitleformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/titleformat.dir/titleformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/titleformat.cpp --- src/formats/CMakeFiles/fpsformat.dir/all --- --- lib/fpsformat.so --- [ 57%] Linking CXX shared module ../../lib/fpsformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/fpsformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/fpsformat.so CMakeFiles/fpsformat.dir/fpsformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 57%] Built target fpsformat --- src/formats/CMakeFiles/nwchemformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/nwchemformat.dir/build.make src/formats/CMakeFiles/nwchemformat.dir/depend --- src/formats/CMakeFiles/nwchemformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/nwchemformat.dir/DependInfo.cmake Scanning dependencies of target nwchemformat /usr/bin/make -f src/formats/CMakeFiles/nwchemformat.dir/build.make src/formats/CMakeFiles/nwchemformat.dir/build --- src/formats/CMakeFiles/nwchemformat.dir/nwchemformat.cpp.o --- [ 58%] Building CXX object src/formats/CMakeFiles/nwchemformat.dir/nwchemformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dnwchemformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/nwchemformat.dir/nwchemformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/nwchemformat.cpp --- src/formats/CMakeFiles/unichemformat.dir/all --- --- lib/unichemformat.so --- [ 58%] Linking CXX shared module ../../lib/unichemformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/unichemformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/unichemformat.so CMakeFiles/unichemformat.dir/unichemformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 58%] Built target unichemformat --- src/formats/CMakeFiles/APIInterface.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/APIInterface.dir/build.make src/formats/CMakeFiles/APIInterface.dir/depend --- src/formats/CMakeFiles/APIInterface.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/APIInterface.dir/DependInfo.cmake Scanning dependencies of target APIInterface /usr/bin/make -f src/formats/CMakeFiles/APIInterface.dir/build.make src/formats/CMakeFiles/APIInterface.dir/build --- src/formats/CMakeFiles/APIInterface.dir/APIInterface.cpp.o --- [ 58%] Building CXX object src/formats/CMakeFiles/APIInterface.dir/APIInterface.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DAPIInterface_EXPORTS -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/APIInterface.dir/APIInterface.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/APIInterface.cpp --- lib/APIInterface.so --- [ 58%] Linking CXX shared module ../../lib/APIInterface.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/APIInterface.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/APIInterface.so CMakeFiles/APIInterface.dir/APIInterface.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 58%] Built target APIInterface --- src/formats/CMakeFiles/qchemformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/qchemformat.dir/build.make src/formats/CMakeFiles/qchemformat.dir/depend --- src/formats/CMakeFiles/qchemformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/qchemformat.dir/DependInfo.cmake Scanning dependencies of target qchemformat /usr/bin/make -f src/formats/CMakeFiles/qchemformat.dir/build.make src/formats/CMakeFiles/qchemformat.dir/build --- src/formats/CMakeFiles/qchemformat.dir/qchemformat.cpp.o --- [ 58%] Building CXX object src/formats/CMakeFiles/qchemformat.dir/qchemformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dqchemformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/qchemformat.dir/qchemformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/qchemformat.cpp --- src/formats/CMakeFiles/molreport.dir/all --- --- lib/molreport.so --- [ 59%] Linking CXX shared module ../../lib/molreport.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/molreport.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/molreport.so CMakeFiles/molreport.dir/molreport.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 59%] Built target molreport --- src/formats/CMakeFiles/svgformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/svgformat.dir/build.make src/formats/CMakeFiles/svgformat.dir/depend --- src/formats/CMakeFiles/svgformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/svgformat.dir/DependInfo.cmake Scanning dependencies of target svgformat /usr/bin/make -f src/formats/CMakeFiles/svgformat.dir/build.make src/formats/CMakeFiles/svgformat.dir/build --- src/formats/CMakeFiles/stlformat.dir/all --- --- lib/stlformat.so --- --- src/formats/CMakeFiles/svgformat.dir/all --- --- src/formats/CMakeFiles/svgformat.dir/svgformat.cpp.o --- --- src/formats/CMakeFiles/stlformat.dir/all --- [ 59%] Linking CXX shared module ../../lib/stlformat.so --- src/formats/CMakeFiles/svgformat.dir/all --- [ 59%] Building CXX object src/formats/CMakeFiles/svgformat.dir/svgformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dsvgformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/svgformat.dir/svgformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/svgformat.cpp --- src/formats/CMakeFiles/stlformat.dir/all --- cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/stlformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/stlformat.so CMakeFiles/stlformat.dir/stlformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 59%] Built target stlformat --- src/formats/CMakeFiles/fastaformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/fastaformat.dir/build.make src/formats/CMakeFiles/fastaformat.dir/depend --- src/formats/CMakeFiles/fastaformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/fastaformat.dir/DependInfo.cmake Scanning dependencies of target fastaformat /usr/bin/make -f src/formats/CMakeFiles/fastaformat.dir/build.make src/formats/CMakeFiles/fastaformat.dir/build --- src/formats/CMakeFiles/fastaformat.dir/fastaformat.cpp.o --- [ 60%] Building CXX object src/formats/CMakeFiles/fastaformat.dir/fastaformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfastaformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread 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/usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 60%] Built target titleformat --- src/formats/CMakeFiles/fingerprintformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/fingerprintformat.dir/build.make src/formats/CMakeFiles/fingerprintformat.dir/depend --- src/formats/CMakeFiles/fingerprintformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/fingerprintformat.dir/DependInfo.cmake Scanning dependencies of target fingerprintformat /usr/bin/make -f src/formats/CMakeFiles/fingerprintformat.dir/build.make src/formats/CMakeFiles/fingerprintformat.dir/build --- src/formats/CMakeFiles/fingerprintformat.dir/fingerprintformat.cpp.o --- [ 60%] Building CXX object src/formats/CMakeFiles/fingerprintformat.dir/fingerprintformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfingerprintformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/fingerprintformat.dir/fingerprintformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/fingerprintformat.cpp --- src/CMakeFiles/plugin_charges.dir/all --- --- src/CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o --- [ 60%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/charges/qtpie.cpp --- src/formats/CMakeFiles/fingerprintformat.dir/all --- --- lib/fingerprintformat.so --- [ 60%] Linking CXX shared module ../../lib/fingerprintformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/fingerprintformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/fingerprintformat.so CMakeFiles/fingerprintformat.dir/fingerprintformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 60%] Built target fingerprintformat --- src/formats/CMakeFiles/siestaformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/siestaformat.dir/build.make src/formats/CMakeFiles/siestaformat.dir/depend --- src/formats/CMakeFiles/siestaformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/siestaformat.dir/DependInfo.cmake Scanning dependencies of target siestaformat /usr/bin/make -f src/formats/CMakeFiles/siestaformat.dir/build.make src/formats/CMakeFiles/siestaformat.dir/build --- src/formats/CMakeFiles/siestaformat.dir/siestaformat.cpp.o --- [ 60%] Building CXX object src/formats/CMakeFiles/siestaformat.dir/siestaformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dsiestaformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/siestaformat.dir/siestaformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/siestaformat.cpp --- src/formats/CMakeFiles/fastaformat.dir/all --- --- lib/fastaformat.so --- [ 60%] Linking CXX shared module ../../lib/fastaformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/fastaformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/fastaformat.so CMakeFiles/fastaformat.dir/fastaformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 60%] Built target fastaformat --- src/formats/CMakeFiles/reportformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/reportformat.dir/build.make src/formats/CMakeFiles/reportformat.dir/depend --- src/formats/CMakeFiles/reportformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/reportformat.dir/DependInfo.cmake --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o --- --- src/formats/CMakeFiles/reportformat.dir/all --- Scanning dependencies of target reportformat /usr/bin/make -f src/formats/CMakeFiles/reportformat.dir/build.make src/formats/CMakeFiles/reportformat.dir/build --- src/CMakeFiles/plugin_ops.dir/all --- [ 60%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/ops/opisomorph.cpp --- src/formats/CMakeFiles/reportformat.dir/all --- --- src/formats/CMakeFiles/reportformat.dir/reportformat.cpp.o --- [ 60%] Building CXX object src/formats/CMakeFiles/reportformat.dir/reportformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dreportformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread 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/usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 60%] Built target svgformat --- src/formats/CMakeFiles/pngformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/pngformat.dir/build.make src/formats/CMakeFiles/pngformat.dir/depend --- src/formats/CMakeFiles/pngformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/pngformat.dir/DependInfo.cmake Scanning dependencies of target pngformat /usr/bin/make -f src/formats/CMakeFiles/pngformat.dir/build.make src/formats/CMakeFiles/pngformat.dir/build --- src/formats/CMakeFiles/pngformat.dir/pngformat.cpp.o --- [ 60%] Building CXX object src/formats/CMakeFiles/pngformat.dir/pngformat.cpp.o cd 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src/formats/CMakeFiles/vaspformat.dir/build.make src/formats/CMakeFiles/vaspformat.dir/depend --- src/formats/CMakeFiles/vaspformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/vaspformat.dir/DependInfo.cmake Scanning dependencies of target vaspformat /usr/bin/make -f src/formats/CMakeFiles/vaspformat.dir/build.make src/formats/CMakeFiles/vaspformat.dir/build --- src/formats/CMakeFiles/vaspformat.dir/vaspformat.cpp.o --- --- src/formats/CMakeFiles/gamessukformat.dir/all --- [ 61%] Built target gamessukformat --- src/formats/CMakeFiles/vaspformat.dir/all --- [ 61%] Building CXX object src/formats/CMakeFiles/vaspformat.dir/vaspformat.cpp.o cd 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src/formats/CMakeFiles/pwscfformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/pwscfformat.dir/build.make src/formats/CMakeFiles/pwscfformat.dir/depend --- src/formats/CMakeFiles/pwscfformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/pwscfformat.dir/DependInfo.cmake Scanning dependencies of target pwscfformat /usr/bin/make -f src/formats/CMakeFiles/pwscfformat.dir/build.make src/formats/CMakeFiles/pwscfformat.dir/build --- src/formats/CMakeFiles/pwscfformat.dir/pwscfformat.cpp.o --- [ 61%] Building CXX object src/formats/CMakeFiles/pwscfformat.dir/pwscfformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ 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-D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dacrformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/acrformat.dir/acrformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/acrformat.cpp --- src/formats/CMakeFiles/siestaformat.dir/all --- --- lib/siestaformat.so --- [ 62%] Linking CXX shared module ../../lib/siestaformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script 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-I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/zindoformat.dir/zindoformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/zindoformat.cpp --- src/formats/CMakeFiles/nwchemformat.dir/all --- --- lib/nwchemformat.so --- [ 62%] Linking CXX shared module ../../lib/nwchemformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/nwchemformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing 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/construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/groformat.dir/DependInfo.cmake Scanning dependencies of target groformat /usr/bin/make -f src/formats/CMakeFiles/groformat.dir/build.make src/formats/CMakeFiles/groformat.dir/build --- src/formats/CMakeFiles/groformat.dir/groformat.cpp.o --- [ 62%] Building CXX object src/formats/CMakeFiles/groformat.dir/groformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgroformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/groformat.dir/groformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/groformat.cpp --- src/formats/CMakeFiles/mopacformat.dir/all --- --- lib/mopacformat.so --- --- src/formats/CMakeFiles/gamessformat.dir/all --- --- lib/gamessformat.so --- --- src/formats/CMakeFiles/mopacformat.dir/all --- [ 62%] Linking CXX shared module ../../lib/mopacformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/mopacformat.dir/link.txt --verbose=1 --- src/formats/CMakeFiles/gamessformat.dir/all --- [ 63%] Linking 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src/formats/CMakeFiles/moldenformat.dir/depend --- src/formats/CMakeFiles/moldenformat.dir/depend --- --- src/formats/CMakeFiles/maeformat.dir/all --- --- src/formats/CMakeFiles/maeformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/maeformat.dir/DependInfo.cmake --- src/formats/CMakeFiles/moldenformat.dir/all --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/moldenformat.dir/DependInfo.cmake Scanning dependencies of target moldenformat /usr/bin/make -f src/formats/CMakeFiles/moldenformat.dir/build.make src/formats/CMakeFiles/moldenformat.dir/build --- src/formats/CMakeFiles/moldenformat.dir/moldenformat.cpp.o --- [ 64%] Building CXX object src/formats/CMakeFiles/moldenformat.dir/moldenformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmoldenformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/moldenformat.dir/moldenformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/moldenformat.cpp --- src/formats/CMakeFiles/maeformat.dir/all --- Scanning dependencies of target maeformat /usr/bin/make -f src/formats/CMakeFiles/maeformat.dir/build.make src/formats/CMakeFiles/maeformat.dir/build --- src/formats/CMakeFiles/maeformat.dir/maeformat.cpp.o --- [ 64%] Building CXX object src/formats/CMakeFiles/maeformat.dir/maeformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmaeformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/maeformat.dir/maeformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/maeformat.cpp --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o --- [ 64%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/ops/ophighlight.cpp --- src/formats/CMakeFiles/pngformat.dir/all --- --- lib/pngformat.so --- [ 64%] Linking CXX shared module ../../lib/pngformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script 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/construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/orcaformat.dir/DependInfo.cmake Scanning dependencies of target orcaformat /usr/bin/make -f src/formats/CMakeFiles/orcaformat.dir/build.make src/formats/CMakeFiles/orcaformat.dir/build --- src/formats/CMakeFiles/orcaformat.dir/orcaformat.cpp.o --- [ 64%] Building CXX object src/formats/CMakeFiles/orcaformat.dir/orcaformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dorcaformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/orcaformat.dir/orcaformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/orcaformat.cpp --- src/formats/CMakeFiles/pwscfformat.dir/all --- --- lib/pwscfformat.so --- [ 64%] Linking CXX shared module ../../lib/pwscfformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/pwscfformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing 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-L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread --- src/formats/CMakeFiles/pwscfformat.dir/all --- [ 64%] Built target pwscfformat --- src/formats/CMakeFiles/PQSformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/PQSformat.dir/build.make src/formats/CMakeFiles/PQSformat.dir/depend --- src/formats/CMakeFiles/PQSformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/PQSformat.dir/DependInfo.cmake Scanning dependencies of target PQSformat /usr/bin/make -f src/formats/CMakeFiles/PQSformat.dir/build.make src/formats/CMakeFiles/PQSformat.dir/build --- src/formats/CMakeFiles/acrformat.dir/all --- [ 64%] Built target acrformat --- src/formats/CMakeFiles/PQSformat.dir/all --- --- src/formats/CMakeFiles/PQSformat.dir/PQSformat.cpp.o --- --- src/formats/CMakeFiles/MCDLformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/MCDLformat.dir/build.make src/formats/CMakeFiles/MCDLformat.dir/depend --- src/formats/CMakeFiles/MCDLformat.dir/depend --- --- src/formats/CMakeFiles/PQSformat.dir/all --- [ 64%] Building CXX object src/formats/CMakeFiles/PQSformat.dir/PQSformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DPQSformat_EXPORTS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/PQSformat.dir/PQSformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/PQSformat.cpp --- src/formats/CMakeFiles/MCDLformat.dir/all --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/MCDLformat.dir/DependInfo.cmake Scanning dependencies of target MCDLformat /usr/bin/make -f src/formats/CMakeFiles/MCDLformat.dir/build.make src/formats/CMakeFiles/MCDLformat.dir/build --- src/formats/CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o --- [ 65%] Building CXX object src/formats/CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMCDLformat_EXPORTS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/MCDLformat.cpp --- src/formats/CMakeFiles/zindoformat.dir/all --- --- lib/zindoformat.so --- [ 65%] Linking CXX shared module ../../lib/zindoformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/zindoformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/zindoformat.so CMakeFiles/zindoformat.dir/zindoformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 66%] Built target zindoformat --- src/formats/CMakeFiles/copyformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/copyformat.dir/build.make src/formats/CMakeFiles/copyformat.dir/depend --- src/formats/CMakeFiles/copyformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/copyformat.dir/DependInfo.cmake Scanning dependencies of target copyformat /usr/bin/make -f src/formats/CMakeFiles/copyformat.dir/build.make src/formats/CMakeFiles/copyformat.dir/build --- src/formats/CMakeFiles/copyformat.dir/copyformat.cpp.o --- [ 66%] Building CXX object src/formats/CMakeFiles/copyformat.dir/copyformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcopyformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/copyformat.dir/copyformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/copyformat.cpp --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/xout.cpp.o --- [ 66%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/xout.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/plugin_ops.dir/ops/xout.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/ops/xout.cpp --- src/formats/CMakeFiles/copyformat.dir/all --- --- lib/copyformat.so --- [ 66%] Linking CXX shared module ../../lib/copyformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/copyformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/copyformat.so CMakeFiles/copyformat.dir/copyformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 66%] Built target copyformat --- src/formats/CMakeFiles/freefracformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/freefracformat.dir/build.make src/formats/CMakeFiles/freefracformat.dir/depend --- src/formats/CMakeFiles/freefracformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/freefracformat.dir/DependInfo.cmake Scanning dependencies of target freefracformat /usr/bin/make 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-Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/freefracformat.dir/freefracformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/freefracformat.cpp --- src/formats/CMakeFiles/PQSformat.dir/all --- --- lib/PQSformat.so --- [ 67%] Linking CXX shared module ../../lib/PQSformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/PQSformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/PQSformat.so CMakeFiles/PQSformat.dir/PQSformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 67%] Built target PQSformat --- src/formats/CMakeFiles/amberformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/amberformat.dir/build.make src/formats/CMakeFiles/amberformat.dir/depend --- src/formats/CMakeFiles/amberformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/amberformat.dir/DependInfo.cmake Scanning dependencies of target amberformat /usr/bin/make -f src/formats/CMakeFiles/amberformat.dir/build.make src/formats/CMakeFiles/amberformat.dir/build --- src/formats/CMakeFiles/amberformat.dir/amberformat.cpp.o --- [ 67%] Building CXX object src/formats/CMakeFiles/amberformat.dir/amberformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Damberformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread 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src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o --- [ 67%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o -c 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moldenformat --- src/formats/CMakeFiles/bgfformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/bgfformat.dir/build.make src/formats/CMakeFiles/bgfformat.dir/depend --- src/formats/CMakeFiles/bgfformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/bgfformat.dir/DependInfo.cmake Scanning dependencies of target bgfformat /usr/bin/make -f src/formats/CMakeFiles/bgfformat.dir/build.make src/formats/CMakeFiles/bgfformat.dir/build --- src/formats/CMakeFiles/bgfformat.dir/bgfformat.cpp.o --- [ 67%] Building CXX object src/formats/CMakeFiles/bgfformat.dir/bgfformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL 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src/formats/CMakeFiles/gaussformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/gaussformat.dir/DependInfo.cmake Scanning dependencies of target gaussformat /usr/bin/make -f src/formats/CMakeFiles/gaussformat.dir/build.make src/formats/CMakeFiles/gaussformat.dir/build --- src/formats/CMakeFiles/gaussformat.dir/gaussformat.cpp.o --- [ 67%] Building CXX object src/formats/CMakeFiles/gaussformat.dir/gaussformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgaussformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/gaussformat.dir/gaussformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/gaussformat.cpp --- src/formats/CMakeFiles/amberformat.dir/all --- --- lib/amberformat.so --- [ 67%] Linking CXX shared module ../../lib/amberformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script 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Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/boxformat.dir/DependInfo.cmake Scanning dependencies of target boxformat /usr/bin/make -f src/formats/CMakeFiles/boxformat.dir/build.make src/formats/CMakeFiles/boxformat.dir/build --- src/formats/CMakeFiles/boxformat.dir/boxformat.cpp.o --- [ 67%] Building CXX object src/formats/CMakeFiles/boxformat.dir/boxformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dboxformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/boxformat.dir/boxformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/boxformat.cpp --- src/formats/CMakeFiles/freefracformat.dir/all --- --- lib/freefracformat.so --- [ 67%] Linking CXX shared module ../../lib/freefracformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/freefracformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/freefracformat.so CMakeFiles/freefracformat.dir/freefracformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 67%] Built target freefracformat --- src/formats/CMakeFiles/cacheformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/cacheformat.dir/build.make src/formats/CMakeFiles/cacheformat.dir/depend --- src/formats/CMakeFiles/cacheformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/cacheformat.dir/DependInfo.cmake Scanning dependencies of target cacheformat /usr/bin/make -f src/formats/CMakeFiles/cacheformat.dir/build.make src/formats/CMakeFiles/cacheformat.dir/build --- src/formats/CMakeFiles/cacheformat.dir/cacheformat.cpp.o --- [ 68%] Building CXX object src/formats/CMakeFiles/cacheformat.dir/cacheformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcacheformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/cacheformat.dir/cacheformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/cacheformat.cpp --- src/formats/CMakeFiles/boxformat.dir/all --- --- lib/boxformat.so --- [ 68%] Linking CXX shared module ../../lib/boxformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/boxformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/boxformat.so CMakeFiles/boxformat.dir/boxformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o --- [ 69%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/ops/opalign.cpp --- src/formats/CMakeFiles/boxformat.dir/all --- [ 69%] Built target boxformat --- src/formats/CMakeFiles/cacaoformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/cacaoformat.dir/build.make src/formats/CMakeFiles/cacaoformat.dir/depend --- src/formats/CMakeFiles/cacaoformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build 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-fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/fchkformat.dir/fchkformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/fchkformat.cpp --- src/formats/CMakeFiles/cacheformat.dir/all --- --- lib/cacheformat.so --- [ 69%] Linking CXX shared module ../../lib/cacheformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/cacheformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/cacheformat.so CMakeFiles/cacheformat.dir/cacheformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 69%] Built target cacheformat --- src/formats/CMakeFiles/carformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/carformat.dir/build.make src/formats/CMakeFiles/carformat.dir/depend --- src/formats/CMakeFiles/carformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/carformat.dir/DependInfo.cmake Scanning dependencies of target carformat /usr/bin/make -f src/formats/CMakeFiles/carformat.dir/build.make src/formats/CMakeFiles/carformat.dir/build --- src/formats/CMakeFiles/carformat.dir/carformat.cpp.o --- [ 69%] Building CXX object src/formats/CMakeFiles/carformat.dir/carformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcarformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o 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-D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dchem3dformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/chem3dformat.dir/chem3dformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/chem3dformat.cpp --- src/formats/CMakeFiles/maeformat.dir/all --- --- lib/maeformat.so --- [ 71%] Linking CXX shared module ../../lib/maeformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script 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/construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/chemdrawct.dir/DependInfo.cmake Scanning dependencies of target chemdrawct /usr/bin/make -f src/formats/CMakeFiles/chemdrawct.dir/build.make src/formats/CMakeFiles/chemdrawct.dir/build --- src/formats/CMakeFiles/chemdrawct.dir/chemdrawct.cpp.o --- [ 71%] Building CXX object src/formats/CMakeFiles/chemdrawct.dir/chemdrawct.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dchemdrawct_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/chemdrawct.dir/chemdrawct.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/chemdrawct.cpp --- src/formats/CMakeFiles/cacaoformat.dir/all --- --- lib/cacaoformat.so --- [ 71%] Linking CXX shared module ../../lib/cacaoformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/cacaoformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/cacaoformat.so CMakeFiles/cacaoformat.dir/cacaoformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread --- src/formats/CMakeFiles/carformat.dir/all --- --- lib/carformat.so --- [ 71%] Linking CXX shared module ../../lib/carformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/carformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/carformat.so CMakeFiles/carformat.dir/carformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 71%] Built target carformat --- src/formats/CMakeFiles/tinkerformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/tinkerformat.dir/build.make src/formats/CMakeFiles/tinkerformat.dir/depend --- src/formats/CMakeFiles/tinkerformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/tinkerformat.dir/DependInfo.cmake Scanning dependencies of target tinkerformat /usr/bin/make -f src/formats/CMakeFiles/tinkerformat.dir/build.make src/formats/CMakeFiles/tinkerformat.dir/build --- src/formats/CMakeFiles/tinkerformat.dir/tinkerformat.cpp.o --- [ 71%] Building CXX object src/formats/CMakeFiles/tinkerformat.dir/tinkerformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dtinkerformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/tinkerformat.dir/tinkerformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/tinkerformat.cpp --- src/formats/CMakeFiles/cacaoformat.dir/all --- [ 71%] Built target cacaoformat --- src/formats/CMakeFiles/hinformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/hinformat.dir/build.make src/formats/CMakeFiles/hinformat.dir/depend --- src/formats/CMakeFiles/hinformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/hinformat.dir/DependInfo.cmake Scanning dependencies of target hinformat /usr/bin/make -f src/formats/CMakeFiles/hinformat.dir/build.make src/formats/CMakeFiles/hinformat.dir/build --- src/formats/CMakeFiles/hinformat.dir/hinformat.cpp.o --- [ 71%] Building CXX object src/formats/CMakeFiles/hinformat.dir/hinformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dhinformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/hinformat.dir/hinformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/hinformat.cpp --- src/formats/CMakeFiles/MCDLformat.dir/all --- --- lib/MCDLformat.so --- [ 71%] Linking CXX shared module ../../lib/MCDLformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/MCDLformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/MCDLformat.so CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 71%] Built target MCDLformat --- src/formats/CMakeFiles/molproformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/molproformat.dir/build.make src/formats/CMakeFiles/molproformat.dir/depend --- src/formats/CMakeFiles/molproformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/molproformat.dir/DependInfo.cmake Scanning dependencies of target molproformat /usr/bin/make -f src/formats/CMakeFiles/molproformat.dir/build.make src/formats/CMakeFiles/molproformat.dir/build --- src/formats/CMakeFiles/molproformat.dir/molproformat.cpp.o --- [ 71%] Building CXX object src/formats/CMakeFiles/molproformat.dir/molproformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmolproformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/molproformat.dir/molproformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/molproformat.cpp --- src/formats/CMakeFiles/chem3dformat.dir/all --- --- lib/chem3dformat.so --- [ 71%] Linking CXX shared module ../../lib/chem3dformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/chem3dformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/chem3dformat.so CMakeFiles/chem3dformat.dir/chem3dformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 71%] Built target chem3dformat --- src/formats/CMakeFiles/chemtoolformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/chemtoolformat.dir/build.make src/formats/CMakeFiles/chemtoolformat.dir/depend --- src/formats/CMakeFiles/chemtoolformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/chemtoolformat.dir/DependInfo.cmake Scanning dependencies of target chemtoolformat /usr/bin/make -f src/formats/CMakeFiles/chemtoolformat.dir/build.make src/formats/CMakeFiles/chemtoolformat.dir/build --- src/formats/CMakeFiles/chemtoolformat.dir/chemtoolformat.cpp.o --- [ 71%] Building CXX object src/formats/CMakeFiles/chemtoolformat.dir/chemtoolformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dchemtoolformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC 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/usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 72%] Built target chemdrawct --- src/formats/CMakeFiles/cifformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/cifformat.dir/build.make src/formats/CMakeFiles/cifformat.dir/depend --- src/formats/CMakeFiles/cifformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/cifformat.dir/DependInfo.cmake Scanning dependencies of target cifformat /usr/bin/make -f src/formats/CMakeFiles/cifformat.dir/build.make src/formats/CMakeFiles/cifformat.dir/build --- src/formats/CMakeFiles/cifformat.dir/cifformat.cpp.o --- [ 73%] Building CXX object src/formats/CMakeFiles/cifformat.dir/cifformat.cpp.o cd 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src/formats/CMakeFiles/pqrformat.dir/all --- --- lib/pqrformat.so --- [ 73%] Linking CXX shared module ../../lib/pqrformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/pqrformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/pqrformat.so CMakeFiles/pqrformat.dir/pqrformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread --- src/CMakeFiles/plugin_ops.dir/all --- --- src/CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o --- [ 73%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o cd /construction/science/openbabel/.build/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/ops/opconfab.cpp --- src/formats/CMakeFiles/pqrformat.dir/all --- [ 73%] Built target pqrformat --- src/formats/CMakeFiles/cofformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/cofformat.dir/build.make src/formats/CMakeFiles/cofformat.dir/depend --- src/formats/CMakeFiles/cofformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/cofformat.dir/DependInfo.cmake Scanning dependencies of target cofformat /usr/bin/make -f src/formats/CMakeFiles/cofformat.dir/build.make src/formats/CMakeFiles/cofformat.dir/build --- src/formats/CMakeFiles/cofformat.dir/cofformat.cpp.o --- [ 73%] Building CXX object src/formats/CMakeFiles/cofformat.dir/cofformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcofformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/cofformat.dir/cofformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/cofformat.cpp --- src/formats/CMakeFiles/hinformat.dir/all --- --- lib/hinformat.so --- --- src/formats/CMakeFiles/tinkerformat.dir/all --- --- lib/tinkerformat.so --- [ 73%] Linking CXX shared module ../../lib/tinkerformat.so --- src/formats/CMakeFiles/hinformat.dir/all --- [ 74%] Linking CXX shared module ../../lib/hinformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/hinformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/hinformat.so CMakeFiles/hinformat.dir/hinformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread --- src/formats/CMakeFiles/tinkerformat.dir/all --- cd 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src/formats/CMakeFiles/crkformat.dir/crkformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcrkformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/crkformat.dir/crkformat.cpp.o -c 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-DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcssrformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/cssrformat.dir/cssrformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/cssrformat.cpp --- src/formats/CMakeFiles/molproformat.dir/all --- --- lib/molproformat.so --- [ 74%] Linking CXX shared module ../../lib/molproformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/molproformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/molproformat.so CMakeFiles/molproformat.dir/molproformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 74%] Built target molproformat --- src/formats/CMakeFiles/dlpolyformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/dlpolyformat.dir/build.make src/formats/CMakeFiles/dlpolyformat.dir/depend --- src/formats/CMakeFiles/dlpolyformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/dlpolyformat.dir/DependInfo.cmake Scanning dependencies of target dlpolyformat /usr/bin/make -f src/formats/CMakeFiles/dlpolyformat.dir/build.make src/formats/CMakeFiles/dlpolyformat.dir/build --- src/formats/CMakeFiles/dlpolyformat.dir/dlpolyformat.cpp.o --- [ 74%] Building CXX object src/formats/CMakeFiles/dlpolyformat.dir/dlpolyformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Ddlpolyformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/dlpolyformat.dir/dlpolyformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/dlpolyformat.cpp --- src/CMakeFiles/plugin_ops.dir/all --- --- lib/plugin_ops.so --- [ 74%] Linking CXX shared module ../lib/plugin_ops.so cd /construction/science/openbabel/.build/src && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/plugin_ops.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing 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CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o CMakeFiles/plugin_ops.dir/ops/sort.cpp.o CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o CMakeFiles/plugin_ops.dir/ops/xout.cpp.o CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz ../lib/libopenbabel.so.7.0.0 /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread --- src/formats/CMakeFiles/textformat.dir/all --- --- lib/textformat.so --- [ 74%] Linking CXX shared module ../../lib/textformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/textformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 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/construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/fhiaimsformat.dir/DependInfo.cmake Scanning dependencies of target fhiaimsformat /usr/bin/make -f src/formats/CMakeFiles/fhiaimsformat.dir/build.make src/formats/CMakeFiles/fhiaimsformat.dir/build --- src/formats/CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o --- [ 74%] Building CXX object src/formats/CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfhiaimsformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/fhiaimsformat.cpp --- src/formats/CMakeFiles/textformat.dir/all --- [ 74%] Built target textformat --- src/formats/CMakeFiles/exyzformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/exyzformat.dir/build.make src/formats/CMakeFiles/exyzformat.dir/depend --- src/formats/CMakeFiles/exyzformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/exyzformat.dir/DependInfo.cmake Scanning dependencies of target exyzformat /usr/bin/make -f src/formats/CMakeFiles/exyzformat.dir/build.make src/formats/CMakeFiles/exyzformat.dir/build --- src/formats/CMakeFiles/exyzformat.dir/exyzformat.cpp.o --- [ 74%] Building CXX object src/formats/CMakeFiles/exyzformat.dir/exyzformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dexyzformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/exyzformat.dir/exyzformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/exyzformat.cpp --- src/formats/CMakeFiles/fchkformat.dir/all --- --- lib/fchkformat.so --- [ 75%] Linking CXX shared module ../../lib/fchkformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/fchkformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/fchkformat.so CMakeFiles/fchkformat.dir/fchkformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 75%] Built target fchkformat --- src/formats/CMakeFiles/fhformat.dir/all --- /usr/bin/make -f src/formats/CMakeFiles/fhformat.dir/build.make src/formats/CMakeFiles/fhformat.dir/depend --- src/formats/CMakeFiles/fhformat.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/fhformat.dir/DependInfo.cmake Scanning dependencies of target fhformat /usr/bin/make -f src/formats/CMakeFiles/fhformat.dir/build.make src/formats/CMakeFiles/fhformat.dir/build --- src/formats/CMakeFiles/fhformat.dir/fhformat.cpp.o --- [ 75%] Building CXX object src/formats/CMakeFiles/fhformat.dir/fhformat.cpp.o cd /construction/science/openbabel/.build/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfhformat_EXPORTS -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/construction/science/openbabel/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/fhformat.dir/fhformat.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/fhformat.cpp --- src/formats/CMakeFiles/crkformat.dir/all --- --- lib/crkformat.so --- [ 76%] Linking CXX shared module ../../lib/crkformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/crkformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/crkformat.so CMakeFiles/crkformat.dir/crkformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 76%] Built target crkformat --- tools/CMakeFiles/obspectrophore.dir/all --- /usr/bin/make -f tools/CMakeFiles/obspectrophore.dir/build.make tools/CMakeFiles/obspectrophore.dir/depend --- tools/CMakeFiles/obspectrophore.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/tools /construction/science/openbabel/.build /construction/science/openbabel/.build/tools /construction/science/openbabel/.build/tools/CMakeFiles/obspectrophore.dir/DependInfo.cmake Scanning dependencies of target obspectrophore /usr/bin/make -f tools/CMakeFiles/obspectrophore.dir/build.make tools/CMakeFiles/obspectrophore.dir/build --- tools/CMakeFiles/obspectrophore.dir/obspectrophore.cpp.o --- [ 76%] Building CXX object tools/CMakeFiles/obspectrophore.dir/obspectrophore.cpp.o cd /construction/science/openbabel/.build/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/obspectrophore.dir/obspectrophore.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/tools/obspectrophore.cpp --- src/formats/CMakeFiles/cssrformat.dir/all --- --- lib/cssrformat.so --- [ 77%] Linking CXX shared module ../../lib/cssrformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/cssrformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/cssrformat.so CMakeFiles/cssrformat.dir/cssrformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 77%] Built target cssrformat --- tools/CMakeFiles/obfitall.dir/all --- /usr/bin/make -f tools/CMakeFiles/obfitall.dir/build.make tools/CMakeFiles/obfitall.dir/depend --- tools/CMakeFiles/obfitall.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/tools /construction/science/openbabel/.build /construction/science/openbabel/.build/tools /construction/science/openbabel/.build/tools/CMakeFiles/obfitall.dir/DependInfo.cmake Scanning dependencies of target obfitall /usr/bin/make -f tools/CMakeFiles/obfitall.dir/build.make tools/CMakeFiles/obfitall.dir/build --- tools/CMakeFiles/obfitall.dir/obfitall.cpp.o --- [ 77%] Building CXX object tools/CMakeFiles/obfitall.dir/obfitall.cpp.o cd /construction/science/openbabel/.build/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/obfitall.dir/obfitall.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/tools/obfitall.cpp --- src/formats/CMakeFiles/gaussformat.dir/all --- --- lib/gaussformat.so --- [ 77%] Linking CXX shared module ../../lib/gaussformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/gaussformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/gaussformat.so CMakeFiles/gaussformat.dir/gaussformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 77%] Built target gaussformat --- tools/CMakeFiles/obrms.dir/all --- /usr/bin/make -f tools/CMakeFiles/obrms.dir/build.make tools/CMakeFiles/obrms.dir/depend --- tools/CMakeFiles/obrms.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/tools /construction/science/openbabel/.build /construction/science/openbabel/.build/tools /construction/science/openbabel/.build/tools/CMakeFiles/obrms.dir/DependInfo.cmake Scanning dependencies of target obrms /usr/bin/make -f tools/CMakeFiles/obrms.dir/build.make tools/CMakeFiles/obrms.dir/build --- tools/CMakeFiles/obrms.dir/obrms.cpp.o --- [ 77%] Building CXX object tools/CMakeFiles/obrms.dir/obrms.cpp.o cd /construction/science/openbabel/.build/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/obrms.dir/obrms.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/tools/obrms.cpp --- src/formats/CMakeFiles/fhformat.dir/all --- --- lib/fhformat.so --- [ 77%] Linking CXX shared module ../../lib/fhformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/fhformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/fhformat.so CMakeFiles/fhformat.dir/fhformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 78%] Built target fhformat --- tools/CMakeFiles/obgen.dir/all --- /usr/bin/make -f tools/CMakeFiles/obgen.dir/build.make tools/CMakeFiles/obgen.dir/depend --- tools/CMakeFiles/obgen.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/tools /construction/science/openbabel/.build /construction/science/openbabel/.build/tools /construction/science/openbabel/.build/tools/CMakeFiles/obgen.dir/DependInfo.cmake Scanning dependencies of target obgen /usr/bin/make -f tools/CMakeFiles/obgen.dir/build.make tools/CMakeFiles/obgen.dir/build --- tools/CMakeFiles/obgen.dir/obgen.cpp.o --- [ 79%] Building CXX object tools/CMakeFiles/obgen.dir/obgen.cpp.o cd /construction/science/openbabel/.build/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/obgen.dir/obgen.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/tools/obgen.cpp --- src/formats/CMakeFiles/cofformat.dir/all --- --- lib/cofformat.so --- [ 79%] Linking CXX shared module ../../lib/cofformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/cofformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/cofformat.so CMakeFiles/cofformat.dir/cofformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 79%] Built target cofformat --- tools/CMakeFiles/obabel.dir/all --- /usr/bin/make -f tools/CMakeFiles/obabel.dir/build.make tools/CMakeFiles/obabel.dir/depend --- tools/CMakeFiles/obabel.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/tools /construction/science/openbabel/.build /construction/science/openbabel/.build/tools /construction/science/openbabel/.build/tools/CMakeFiles/obabel.dir/DependInfo.cmake Scanning dependencies of target obabel /usr/bin/make -f tools/CMakeFiles/obabel.dir/build.make tools/CMakeFiles/obabel.dir/build --- tools/CMakeFiles/obabel.dir/obabel.cpp.o --- [ 79%] Building CXX object tools/CMakeFiles/obabel.dir/obabel.cpp.o cd /construction/science/openbabel/.build/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/obabel.dir/obabel.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/tools/obabel.cpp --- src/formats/CMakeFiles/fhiaimsformat.dir/all --- --- lib/fhiaimsformat.so --- [ 79%] Linking CXX shared module ../../lib/fhiaimsformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/fhiaimsformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/fhiaimsformat.so CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 79%] Built target fhiaimsformat --- tools/CMakeFiles/obmm.dir/all --- /usr/bin/make -f tools/CMakeFiles/obmm.dir/build.make tools/CMakeFiles/obmm.dir/depend --- tools/CMakeFiles/obmm.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/tools /construction/science/openbabel/.build /construction/science/openbabel/.build/tools /construction/science/openbabel/.build/tools/CMakeFiles/obmm.dir/DependInfo.cmake Scanning dependencies of target obmm /usr/bin/make -f tools/CMakeFiles/obmm.dir/build.make tools/CMakeFiles/obmm.dir/build --- tools/CMakeFiles/obmm.dir/obmm.cpp.o --- [ 80%] Building CXX object tools/CMakeFiles/obmm.dir/obmm.cpp.o cd /construction/science/openbabel/.build/tools && 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--verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG CMakeFiles/obspectrophore.dir/obspectrophore.cpp.o -o ../bin/obspectrophore -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib ../lib/libopenbabel.so.7.0.0 /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 81%] Built target obspectrophore --- tools/CMakeFiles/obdistgen.dir/all --- /usr/bin/make -f tools/CMakeFiles/obdistgen.dir/build.make tools/CMakeFiles/obdistgen.dir/depend --- tools/CMakeFiles/obdistgen.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/tools /construction/science/openbabel/.build /construction/science/openbabel/.build/tools 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exyzformat --- tools/CMakeFiles/obconformer.dir/all --- /usr/bin/make -f tools/CMakeFiles/obconformer.dir/build.make tools/CMakeFiles/obconformer.dir/depend --- tools/CMakeFiles/obconformer.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/tools /construction/science/openbabel/.build /construction/science/openbabel/.build/tools /construction/science/openbabel/.build/tools/CMakeFiles/obconformer.dir/DependInfo.cmake --- tools/CMakeFiles/obdistgen.dir/all --- Scanning dependencies of target obdistgen /usr/bin/make -f tools/CMakeFiles/obdistgen.dir/build.make tools/CMakeFiles/obdistgen.dir/build --- tools/CMakeFiles/obdistgen.dir/obdistgen.cpp.o --- --- tools/CMakeFiles/obconformer.dir/all --- Scanning dependencies of target obconformer /usr/bin/make -f tools/CMakeFiles/obconformer.dir/build.make tools/CMakeFiles/obconformer.dir/build --- tools/CMakeFiles/obconformer.dir/obconformer.cpp.o --- [ 81%] Building CXX object tools/CMakeFiles/obconformer.dir/obconformer.cpp.o cd /construction/science/openbabel/.build/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/obconformer.dir/obconformer.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/tools/obconformer.cpp --- tools/CMakeFiles/obdistgen.dir/all --- [ 81%] Building CXX object tools/CMakeFiles/obdistgen.dir/obdistgen.cpp.o cd /construction/science/openbabel/.build/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/obdistgen.dir/obdistgen.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/tools/obdistgen.cpp --- tools/CMakeFiles/obfitall.dir/all --- --- bin/obfitall --- [ 81%] Linking CXX 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/construction/science/openbabel/.build /construction/science/openbabel/.build/tools /construction/science/openbabel/.build/tools/CMakeFiles/obprop.dir/DependInfo.cmake Scanning dependencies of target obprop /usr/bin/make -f tools/CMakeFiles/obprop.dir/build.make tools/CMakeFiles/obprop.dir/build --- tools/CMakeFiles/obprop.dir/obprop.cpp.o --- [ 81%] Building CXX object tools/CMakeFiles/obprop.dir/obprop.cpp.o cd /construction/science/openbabel/.build/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/obprop.dir/obprop.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/tools/obprop.cpp --- tools/CMakeFiles/obgen.dir/all --- --- bin/obgen --- [ 81%] Linking CXX executable ../bin/obgen cd /construction/science/openbabel/.build/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/obgen.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG CMakeFiles/obgen.dir/obgen.cpp.o -o ../bin/obgen -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib ../lib/libopenbabel.so.7.0.0 /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 81%] Built target obgen --- tools/CMakeFiles/obfit.dir/all --- /usr/bin/make -f tools/CMakeFiles/obfit.dir/build.make tools/CMakeFiles/obfit.dir/depend --- tools/CMakeFiles/obfit.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/tools /construction/science/openbabel/.build /construction/science/openbabel/.build/tools /construction/science/openbabel/.build/tools/CMakeFiles/obfit.dir/DependInfo.cmake Scanning dependencies of target obfit /usr/bin/make -f tools/CMakeFiles/obfit.dir/build.make tools/CMakeFiles/obfit.dir/build --- tools/CMakeFiles/obabel.dir/all --- --- bin/obabel --- --- tools/CMakeFiles/obfit.dir/all --- --- tools/CMakeFiles/obfit.dir/obfit.cpp.o --- --- tools/CMakeFiles/obabel.dir/all --- [ 81%] Linking CXX executable ../bin/obabel cd /construction/science/openbabel/.build/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/obabel.dir/link.txt --verbose=1 --- tools/CMakeFiles/obfit.dir/all --- [ 81%] Building CXX object tools/CMakeFiles/obfit.dir/obfit.cpp.o cd /construction/science/openbabel/.build/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/obfit.dir/obfit.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/tools/obfit.cpp --- tools/CMakeFiles/obabel.dir/all --- /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG CMakeFiles/obabel.dir/obabel.cpp.o -o ../bin/obabel -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib ../lib/libopenbabel.so.7.0.0 /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 81%] Built target obabel --- tools/CMakeFiles/obrotamer.dir/all --- /usr/bin/make -f tools/CMakeFiles/obrotamer.dir/build.make tools/CMakeFiles/obrotamer.dir/depend --- tools/CMakeFiles/obrotamer.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/tools /construction/science/openbabel/.build /construction/science/openbabel/.build/tools /construction/science/openbabel/.build/tools/CMakeFiles/obrotamer.dir/DependInfo.cmake Scanning dependencies of target obrotamer /usr/bin/make -f tools/CMakeFiles/obrotamer.dir/build.make tools/CMakeFiles/obrotamer.dir/build --- tools/CMakeFiles/obrotamer.dir/obrotamer.cpp.o --- [ 81%] Building CXX object tools/CMakeFiles/obrotamer.dir/obrotamer.cpp.o cd /construction/science/openbabel/.build/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/obrotamer.dir/obrotamer.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/tools/obrotamer.cpp --- 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tools/CMakeFiles/obgrep.dir/build.make tools/CMakeFiles/obgrep.dir/depend --- tools/CMakeFiles/obgrep.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/tools /construction/science/openbabel/.build /construction/science/openbabel/.build/tools /construction/science/openbabel/.build/tools/CMakeFiles/obgrep.dir/DependInfo.cmake Scanning dependencies of target obgrep /usr/bin/make -f tools/CMakeFiles/obgrep.dir/build.make tools/CMakeFiles/obgrep.dir/build --- tools/CMakeFiles/obgrep.dir/obgrep.cpp.o --- [ 82%] Building CXX object tools/CMakeFiles/obgrep.dir/obgrep.cpp.o cd /construction/science/openbabel/.build/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/obgrep.dir/obgrep.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/tools/obgrep.cpp --- tools/CMakeFiles/obprop.dir/all --- --- bin/obprop --- [ 83%] Linking CXX executable ../bin/obprop cd /construction/science/openbabel/.build/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/obprop.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG CMakeFiles/obprop.dir/obprop.cpp.o -o ../bin/obprop -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib ../lib/libopenbabel.so.7.0.0 /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 83%] Built target obprop --- tools/CMakeFiles/obenergy.dir/all --- /usr/bin/make -f tools/CMakeFiles/obenergy.dir/build.make tools/CMakeFiles/obenergy.dir/depend --- tools/CMakeFiles/obenergy.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/tools /construction/science/openbabel/.build /construction/science/openbabel/.build/tools /construction/science/openbabel/.build/tools/CMakeFiles/obenergy.dir/DependInfo.cmake Scanning dependencies of target obenergy /usr/bin/make -f tools/CMakeFiles/obenergy.dir/build.make tools/CMakeFiles/obenergy.dir/build --- tools/CMakeFiles/obenergy.dir/obenergy.cpp.o --- [ 83%] Building CXX object tools/CMakeFiles/obenergy.dir/obenergy.cpp.o cd /construction/science/openbabel/.build/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/obenergy.dir/obenergy.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/tools/obenergy.cpp --- tools/CMakeFiles/obrms.dir/all --- --- bin/obrms --- --- tools/CMakeFiles/obmm.dir/all --- --- bin/obmm --- --- tools/CMakeFiles/obrms.dir/all 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-Wno-narrowing -std=c++11 -O3 -DNDEBUG CMakeFiles/obmm.dir/obmm.cpp.o -o ../bin/obmm -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib ../lib/libopenbabel.so.7.0.0 /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread --- tools/CMakeFiles/obconformer.dir/all --- --- bin/obconformer --- --- tools/CMakeFiles/obrms.dir/all --- [ 83%] Built target obrms --- tools/CMakeFiles/obthermo.dir/all --- /usr/bin/make -f tools/CMakeFiles/obthermo.dir/build.make tools/CMakeFiles/obthermo.dir/depend --- tools/CMakeFiles/obconformer.dir/all --- [ 84%] Linking CXX executable ../bin/obconformer cd /construction/science/openbabel/.build/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/obconformer.dir/link.txt --verbose=1 --- tools/CMakeFiles/obthermo.dir/all --- --- tools/CMakeFiles/obthermo.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/tools /construction/science/openbabel/.build /construction/science/openbabel/.build/tools /construction/science/openbabel/.build/tools/CMakeFiles/obthermo.dir/DependInfo.cmake --- tools/CMakeFiles/obconformer.dir/all --- /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG CMakeFiles/obconformer.dir/obconformer.cpp.o -o ../bin/obconformer -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib ../lib/libopenbabel.so.7.0.0 /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread --- tools/CMakeFiles/obthermo.dir/all --- Scanning dependencies of target obthermo /usr/bin/make -f tools/CMakeFiles/obthermo.dir/build.make tools/CMakeFiles/obthermo.dir/build --- tools/CMakeFiles/obmm.dir/all --- [ 84%] Built target obmm --- tools/CMakeFiles/obthermo.dir/all --- --- tools/CMakeFiles/obthermo.dir/obthermo.cpp.o --- --- tools/CMakeFiles/obrotate.dir/all --- /usr/bin/make -f tools/CMakeFiles/obrotate.dir/build.make tools/CMakeFiles/obrotate.dir/depend --- tools/CMakeFiles/obrotate.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/tools /construction/science/openbabel/.build /construction/science/openbabel/.build/tools /construction/science/openbabel/.build/tools/CMakeFiles/obrotate.dir/DependInfo.cmake --- tools/CMakeFiles/obthermo.dir/all --- [ 85%] Building CXX object tools/CMakeFiles/obthermo.dir/obthermo.cpp.o cd /construction/science/openbabel/.build/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/obthermo.dir/obthermo.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/tools/obthermo.cpp --- tools/CMakeFiles/obrotate.dir/all --- Scanning dependencies of target obrotate /usr/bin/make -f tools/CMakeFiles/obrotate.dir/build.make tools/CMakeFiles/obrotate.dir/build --- tools/CMakeFiles/obrotate.dir/obrotate.cpp.o --- --- tools/CMakeFiles/obconformer.dir/all --- [ 85%] Built target obconformer --- tools/CMakeFiles/obprobe.dir/all --- /usr/bin/make -f tools/CMakeFiles/obprobe.dir/build.make tools/CMakeFiles/obprobe.dir/depend --- tools/CMakeFiles/obprobe.dir/depend --- --- tools/CMakeFiles/obrotate.dir/all --- [ 85%] Building CXX object tools/CMakeFiles/obrotate.dir/obrotate.cpp.o cd /construction/science/openbabel/.build/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/obrotate.dir/obrotate.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/tools/obrotate.cpp --- tools/CMakeFiles/obprobe.dir/all --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/tools /construction/science/openbabel/.build /construction/science/openbabel/.build/tools /construction/science/openbabel/.build/tools/CMakeFiles/obprobe.dir/DependInfo.cmake Scanning dependencies of target obprobe /usr/bin/make -f tools/CMakeFiles/obprobe.dir/build.make tools/CMakeFiles/obprobe.dir/build --- tools/CMakeFiles/obprobe.dir/obprobe.cpp.o --- [ 85%] Building CXX object tools/CMakeFiles/obprobe.dir/obprobe.cpp.o cd /construction/science/openbabel/.build/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/obprobe.dir/obprobe.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/tools/obprobe.cpp --- tools/CMakeFiles/obgrep.dir/all --- --- bin/obgrep --- [ 85%] Linking CXX executable ../bin/obgrep cd /construction/science/openbabel/.build/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/obgrep.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG CMakeFiles/obgrep.dir/obgrep.cpp.o -o ../bin/obgrep -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib ../lib/libopenbabel.so.7.0.0 /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 85%] Built target obgrep --- tools/CMakeFiles/obsym.dir/all --- /usr/bin/make -f tools/CMakeFiles/obsym.dir/build.make tools/CMakeFiles/obsym.dir/depend --- tools/CMakeFiles/obsym.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/tools /construction/science/openbabel/.build /construction/science/openbabel/.build/tools /construction/science/openbabel/.build/tools/CMakeFiles/obsym.dir/DependInfo.cmake Scanning dependencies of target obsym /usr/bin/make -f tools/CMakeFiles/obsym.dir/build.make tools/CMakeFiles/obsym.dir/build --- tools/CMakeFiles/obsym.dir/obsym.cpp.o --- [ 85%] Building CXX object tools/CMakeFiles/obsym.dir/obsym.cpp.o cd /construction/science/openbabel/.build/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/obsym.dir/obsym.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/tools/obsym.cpp --- tools/CMakeFiles/obdistgen.dir/all --- --- bin/obdistgen --- [ 85%] Linking CXX executable ../bin/obdistgen cd /construction/science/openbabel/.build/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/obdistgen.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG CMakeFiles/obdistgen.dir/obdistgen.cpp.o -o ../bin/obdistgen -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib ../lib/libopenbabel.so.7.0.0 /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 85%] Built target obdistgen --- tools/CMakeFiles/obminimize.dir/all --- /usr/bin/make -f tools/CMakeFiles/obminimize.dir/build.make tools/CMakeFiles/obminimize.dir/depend --- tools/CMakeFiles/obminimize.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/tools /construction/science/openbabel/.build /construction/science/openbabel/.build/tools /construction/science/openbabel/.build/tools/CMakeFiles/obminimize.dir/DependInfo.cmake Scanning dependencies of target obminimize /usr/bin/make -f tools/CMakeFiles/obminimize.dir/build.make tools/CMakeFiles/obminimize.dir/build --- tools/CMakeFiles/obminimize.dir/obminimize.cpp.o --- [ 85%] Building CXX object tools/CMakeFiles/obminimize.dir/obminimize.cpp.o cd /construction/science/openbabel/.build/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/obminimize.dir/obminimize.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/tools/obminimize.cpp --- tools/CMakeFiles/obthermo.dir/all --- --- bin/obthermo --- [ 85%] Linking CXX executable ../bin/obthermo cd /construction/science/openbabel/.build/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/obthermo.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG CMakeFiles/obthermo.dir/obthermo.cpp.o -o ../bin/obthermo -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib ../lib/libopenbabel.so.7.0.0 /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 85%] Built target obthermo --- tools/CMakeFiles/obtautomer.dir/all --- /usr/bin/make -f tools/CMakeFiles/obtautomer.dir/build.make tools/CMakeFiles/obtautomer.dir/depend --- tools/CMakeFiles/obfit.dir/all --- --- bin/obfit --- --- tools/CMakeFiles/obtautomer.dir/all --- --- tools/CMakeFiles/obtautomer.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/tools /construction/science/openbabel/.build /construction/science/openbabel/.build/tools /construction/science/openbabel/.build/tools/CMakeFiles/obtautomer.dir/DependInfo.cmake --- tools/CMakeFiles/obfit.dir/all --- [ 85%] Linking CXX executable ../bin/obfit cd /construction/science/openbabel/.build/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/obfit.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG CMakeFiles/obfit.dir/obfit.cpp.o -o ../bin/obfit -L/usr/local/lib 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-isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/obtautomer.dir/obtautomer.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/tools/obtautomer.cpp --- tools/CMakeFiles/obfit.dir/all --- [ 85%] Built target obfit --- src/GUI/CMakeFiles/obgui.dir/all --- /usr/bin/make -f src/GUI/CMakeFiles/obgui.dir/build.make src/GUI/CMakeFiles/obgui.dir/depend --- src/GUI/CMakeFiles/obgui.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/GUI /construction/science/openbabel/.build /construction/science/openbabel/.build/src/GUI /construction/science/openbabel/.build/src/GUI/CMakeFiles/obgui.dir/DependInfo.cmake --- src/formats/CMakeFiles/cifformat.dir/all --- --- lib/cifformat.so --- [ 85%] Linking CXX shared module ../../lib/cifformat.so cd /construction/science/openbabel/.build/src/formats && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/cifformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../../lib/cifformat.so CMakeFiles/cifformat.dir/cifformat.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.7.0.0 /usr/local/lib/libcairo.so -lc -lm /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 85%] Built target cifformat --- test/CMakeFiles/test_inchiwrite.dir/all --- /usr/bin/make -f test/CMakeFiles/test_inchiwrite.dir/build.make test/CMakeFiles/test_inchiwrite.dir/depend --- tools/CMakeFiles/obsym.dir/all --- --- bin/obsym --- --- test/CMakeFiles/test_inchiwrite.dir/all --- --- test/CMakeFiles/test_inchiwrite.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/test /construction/science/openbabel/.build /construction/science/openbabel/.build/test /construction/science/openbabel/.build/test/CMakeFiles/test_inchiwrite.dir/DependInfo.cmake --- tools/CMakeFiles/obsym.dir/all --- [ 85%] Linking CXX executable ../bin/obsym cd /construction/science/openbabel/.build/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/obsym.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG CMakeFiles/obsym.dir/obsym.cpp.o -o ../bin/obsym -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib ../lib/libopenbabel.so.7.0.0 /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread --- test/CMakeFiles/test_inchiwrite.dir/all --- Scanning dependencies of target test_inchiwrite /usr/bin/make -f test/CMakeFiles/test_inchiwrite.dir/build.make test/CMakeFiles/test_inchiwrite.dir/build --- test/CMakeFiles/test_inchiwrite.dir/inchiwrite.cpp.o --- [ 86%] Building CXX object test/CMakeFiles/test_inchiwrite.dir/inchiwrite.cpp.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_inchiwrite.dir/inchiwrite.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/inchiwrite.cpp --- src/GUI/CMakeFiles/obgui.dir/all --- Scanning dependencies of target obgui /usr/bin/make -f src/GUI/CMakeFiles/obgui.dir/build.make src/GUI/CMakeFiles/obgui.dir/build --- src/GUI/CMakeFiles/obgui.dir/OBGUI.cpp.o --- --- tools/CMakeFiles/obsym.dir/all --- [ 86%] Built target obsym --- test/CMakeFiles/test_runner.dir/all --- /usr/bin/make -f test/CMakeFiles/test_runner.dir/build.make test/CMakeFiles/test_runner.dir/depend --- test/CMakeFiles/test_runner.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/test /construction/science/openbabel/.build /construction/science/openbabel/.build/test /construction/science/openbabel/.build/test/CMakeFiles/test_runner.dir/DependInfo.cmake --- src/GUI/CMakeFiles/obgui.dir/all --- [ 86%] Building CXX object src/GUI/CMakeFiles/obgui.dir/OBGUI.cpp.o cd /construction/science/openbabel/.build/src/GUI && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/src/GUI/. -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/obgui.dir/OBGUI.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/GUI/OBGUI.cpp --- test/CMakeFiles/test_runner.dir/all --- Scanning dependencies of target test_runner /usr/bin/make -f test/CMakeFiles/test_runner.dir/build.make test/CMakeFiles/test_runner.dir/build --- tools/CMakeFiles/obprobe.dir/all --- --- bin/obprobe --- --- test/CMakeFiles/test_runner.dir/all --- --- test/CMakeFiles/test_runner.dir/test_runner.cpp.o --- [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/test_runner.cpp.o --- tools/CMakeFiles/obprobe.dir/all --- [ 86%] Linking CXX executable ../bin/obprobe --- test/CMakeFiles/test_runner.dir/all --- cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/test_runner.cpp.o -c /construction/science/openbabel/.build/test/test_runner.cpp --- tools/CMakeFiles/obprobe.dir/all --- cd /construction/science/openbabel/.build/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/obprobe.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG CMakeFiles/obprobe.dir/obprobe.cpp.o -o ../bin/obprobe -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib ../lib/libopenbabel.so.7.0.0 /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 86%] Built target obprobe --- test/CMakeFiles/roundtrip.dir/all --- /usr/bin/make -f test/CMakeFiles/roundtrip.dir/build.make test/CMakeFiles/roundtrip.dir/depend --- test/CMakeFiles/roundtrip.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/test /construction/science/openbabel/.build /construction/science/openbabel/.build/test /construction/science/openbabel/.build/test/CMakeFiles/roundtrip.dir/DependInfo.cmake Scanning dependencies of target roundtrip /usr/bin/make -f test/CMakeFiles/roundtrip.dir/build.make test/CMakeFiles/roundtrip.dir/build --- test/CMakeFiles/roundtrip.dir/roundtrip.cpp.o --- [ 86%] Building CXX object test/CMakeFiles/roundtrip.dir/roundtrip.cpp.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/roundtrip.dir/roundtrip.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/roundtrip.cpp --- test/CMakeFiles/test_runner.dir/all --- --- test/CMakeFiles/test_runner.dir/aligntest.cpp.o --- [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/aligntest.cpp.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/aligntest.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/aligntest.cpp --- test/CMakeFiles/roundtrip.dir/all --- --- bin/roundtrip --- [ 86%] Linking CXX executable ../bin/roundtrip cd /construction/science/openbabel/.build/test && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/roundtrip.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG CMakeFiles/roundtrip.dir/roundtrip.cpp.o -o ../bin/roundtrip -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib ../lib/libopenbabel.so.7.0.0 /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 86%] Built target roundtrip --- scripts/CMakeFiles/bindings_python.dir/all --- /usr/bin/make -f scripts/CMakeFiles/bindings_python.dir/build.make scripts/CMakeFiles/bindings_python.dir/depend --- scripts/CMakeFiles/bindings_python.dir/depend --- cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/scripts /construction/science/openbabel/.build /construction/science/openbabel/.build/scripts /construction/science/openbabel/.build/scripts/CMakeFiles/bindings_python.dir/DependInfo.cmake Scanning dependencies of target bindings_python 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-Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIC -pthread -std=gnu++11 -o CMakeFiles/bindings_python.dir/python/openbabel/openbabel-python.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/scripts/python/openbabel/openbabel-python.cpp --- tools/CMakeFiles/obrotamer.dir/all --- --- bin/obrotamer --- [ 86%] Linking CXX executable ../bin/obrotamer cd /construction/science/openbabel/.build/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/obrotamer.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG CMakeFiles/obrotamer.dir/obrotamer.cpp.o -o ../bin/obrotamer -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib ../lib/libopenbabel.so.7.0.0 /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 87%] Built target obrotamer --- tools/CMakeFiles/obtautomer.dir/all --- --- bin/obtautomer --- [ 87%] Linking CXX executable ../bin/obtautomer cd /construction/science/openbabel/.build/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/obtautomer.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG CMakeFiles/obtautomer.dir/obtautomer.cpp.o -o ../bin/obtautomer -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib ../lib/libopenbabel.so.7.0.0 /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread --- test/CMakeFiles/test_inchiwrite.dir/all --- --- test/CMakeFiles/test_inchiwrite.dir/__/src/formats/getinchi.cpp.o --- --- tools/CMakeFiles/obtautomer.dir/all --- [ 87%] Built target obtautomer --- test/CMakeFiles/test_inchiwrite.dir/all --- [ 87%] Building CXX object test/CMakeFiles/test_inchiwrite.dir/__/src/formats/getinchi.cpp.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_inchiwrite.dir/__/src/formats/getinchi.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/formats/getinchi.cpp --- tools/CMakeFiles/obminimize.dir/all --- --- bin/obminimize --- [ 87%] Linking CXX executable ../bin/obminimize cd /construction/science/openbabel/.build/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/obminimize.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG CMakeFiles/obminimize.dir/obminimize.cpp.o -o ../bin/obminimize -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib ../lib/libopenbabel.so.7.0.0 /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 87%] Built target obminimize --- tools/CMakeFiles/obrotate.dir/all --- --- bin/obrotate --- [ 87%] Linking CXX executable ../bin/obrotate cd /construction/science/openbabel/.build/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/obrotate.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG CMakeFiles/obrotate.dir/obrotate.cpp.o -o ../bin/obrotate -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib ../lib/libopenbabel.so.7.0.0 /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 87%] Built target obrotate --- test/CMakeFiles/test_inchiwrite.dir/all --- --- bin/test_inchiwrite --- [ 87%] Linking CXX executable ../bin/test_inchiwrite cd /construction/science/openbabel/.build/test && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/test_inchiwrite.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG CMakeFiles/test_inchiwrite.dir/inchiwrite.cpp.o CMakeFiles/test_inchiwrite.dir/__/src/formats/getinchi.cpp.o -o ../bin/test_inchiwrite -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib ../lib/libopenbabel.so.7.0.0 /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 87%] Built target test_inchiwrite --- src/GUI/CMakeFiles/obgui.dir/all --- --- src/GUI/CMakeFiles/obgui.dir/stdwx.cpp.o --- --- src/GUI/CMakeFiles/obgui.dir/optswx.cpp.o --- [ 88%] Building CXX object src/GUI/CMakeFiles/obgui.dir/optswx.cpp.o --- src/GUI/CMakeFiles/obgui.dir/stdwx.cpp.o --- [ 88%] Building CXX object src/GUI/CMakeFiles/obgui.dir/stdwx.cpp.o cd /construction/science/openbabel/.build/src/GUI && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/src/GUI/. -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/obgui.dir/stdwx.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/GUI/stdwx.cpp --- src/GUI/CMakeFiles/obgui.dir/optswx.cpp.o --- cd /construction/science/openbabel/.build/src/GUI && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/src/GUI/. -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/obgui.dir/optswx.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/src/GUI/optswx.cpp --- test/CMakeFiles/test_runner.dir/all --- --- test/CMakeFiles/test_runner.dir/aliastest.cpp.o --- --- test/CMakeFiles/test_runner.dir/automorphismtest.cpp.o --- --- test/CMakeFiles/test_runner.dir/buildertest.cpp.o --- --- test/CMakeFiles/test_runner.dir/aliastest.cpp.o --- [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/aliastest.cpp.o --- test/CMakeFiles/test_runner.dir/buildertest.cpp.o --- [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/buildertest.cpp.o --- test/CMakeFiles/test_runner.dir/automorphismtest.cpp.o --- [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/automorphismtest.cpp.o --- test/CMakeFiles/test_runner.dir/aliastest.cpp.o --- cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/aliastest.cpp.o -c 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-std=gnu++11 -o CMakeFiles/test_runner.dir/automorphismtest.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/automorphismtest.cpp --- test/CMakeFiles/test_runner.dir/buildertest.cpp.o --- cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/buildertest.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/buildertest.cpp --- tools/CMakeFiles/obenergy.dir/all --- --- bin/obenergy --- [ 89%] Linking CXX executable ../bin/obenergy cd /construction/science/openbabel/.build/tools && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/obenergy.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG CMakeFiles/obenergy.dir/obenergy.cpp.o -o ../bin/obenergy -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib ../lib/libopenbabel.so.7.0.0 /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 90%] Built target obenergy --- test/CMakeFiles/test_runner.dir/all --- --- test/CMakeFiles/test_runner.dir/canonconsistenttest.cpp.o --- --- test/CMakeFiles/test_runner.dir/canonfragmenttest.cpp.o --- --- test/CMakeFiles/test_runner.dir/canonconsistenttest.cpp.o --- [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/canonconsistenttest.cpp.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/canonconsistenttest.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/canonconsistenttest.cpp --- test/CMakeFiles/test_runner.dir/canonfragmenttest.cpp.o --- [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/canonfragmenttest.cpp.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/canonfragmenttest.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/canonfragmenttest.cpp --- test/CMakeFiles/test_runner.dir/canonstabletest.cpp.o --- [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/canonstabletest.cpp.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/canonstabletest.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/canonstabletest.cpp --- src/CMakeFiles/plugin_charges.dir/all --- --- lib/plugin_charges.so --- [ 90%] Linking CXX shared module ../lib/plugin_charges.so cd /construction/science/openbabel/.build/src && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/plugin_charges.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -shared -o ../lib/plugin_charges.so CMakeFiles/plugin_charges.dir/charges/eem.cpp.o CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o CMakeFiles/plugin_charges.dir/charges/none.cpp.o CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz ../lib/libopenbabel.so.7.0.0 /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 90%] Built target plugin_charges --- test/CMakeFiles/test_runner.dir/all --- --- test/CMakeFiles/test_runner.dir/carspacegrouptest.cpp.o --- --- test/CMakeFiles/test_runner.dir/cifspacegrouptest.cpp.o --- --- test/CMakeFiles/test_runner.dir/carspacegrouptest.cpp.o --- [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/carspacegrouptest.cpp.o --- test/CMakeFiles/test_runner.dir/cifspacegrouptest.cpp.o --- [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/cifspacegrouptest.cpp.o --- test/CMakeFiles/test_runner.dir/carspacegrouptest.cpp.o --- cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/carspacegrouptest.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/carspacegrouptest.cpp --- test/CMakeFiles/test_runner.dir/cifspacegrouptest.cpp.o --- cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/cifspacegrouptest.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/cifspacegrouptest.cpp --- test/CMakeFiles/test_runner.dir/cistranstest.cpp.o --- [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/cistranstest.cpp.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/cistranstest.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/cistranstest.cpp --- test/CMakeFiles/test_runner.dir/conversiontest.cpp.o --- [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/conversiontest.cpp.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/conversiontest.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/conversiontest.cpp --- test/CMakeFiles/test_runner.dir/graphsymtest.cpp.o --- [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/graphsymtest.cpp.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/graphsymtest.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/graphsymtest.cpp --- test/CMakeFiles/test_runner.dir/gziptest.cpp.o --- [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/gziptest.cpp.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/gziptest.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/gziptest.cpp --- test/CMakeFiles/test_runner.dir/addhtest.cpp.o --- [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/addhtest.cpp.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/addhtest.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/addhtest.cpp --- test/CMakeFiles/test_runner.dir/implicitHtest.cpp.o --- --- test/CMakeFiles/test_runner.dir/lssrtest.cpp.o --- [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/lssrtest.cpp.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/lssrtest.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/lssrtest.cpp --- test/CMakeFiles/test_runner.dir/implicitHtest.cpp.o --- [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/implicitHtest.cpp.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/implicitHtest.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/implicitHtest.cpp --- test/CMakeFiles/test_runner.dir/isomorphismtest.cpp.o --- [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/isomorphismtest.cpp.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/isomorphismtest.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/isomorphismtest.cpp --- test/CMakeFiles/test_runner.dir/multicmltest.cpp.o --- [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/multicmltest.cpp.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/multicmltest.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/multicmltest.cpp --- test/CMakeFiles/test_runner.dir/periodictest.cpp.o --- --- test/CMakeFiles/test_runner.dir/regressionstest.cpp.o --- --- test/CMakeFiles/test_runner.dir/periodictest.cpp.o --- [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/periodictest.cpp.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/periodictest.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/periodictest.cpp --- test/CMakeFiles/test_runner.dir/regressionstest.cpp.o --- [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/regressionstest.cpp.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/regressionstest.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/regressionstest.cpp --- test/CMakeFiles/test_runner.dir/rotortest.cpp.o --- [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/rotortest.cpp.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/rotortest.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/rotortest.cpp --- test/CMakeFiles/test_runner.dir/shuffletest.cpp.o --- [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/shuffletest.cpp.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/shuffletest.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/shuffletest.cpp --- test/CMakeFiles/test_runner.dir/smilestest.cpp.o --- [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/smilestest.cpp.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/smilestest.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/smilestest.cpp --- test/CMakeFiles/test_runner.dir/spectrophoretest.cpp.o --- [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/spectrophoretest.cpp.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/spectrophoretest.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/spectrophoretest.cpp --- test/CMakeFiles/test_runner.dir/squareplanartest.cpp.o --- [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/squareplanartest.cpp.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/squareplanartest.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/squareplanartest.cpp --- test/CMakeFiles/test_runner.dir/stereotest.cpp.o --- [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/stereotest.cpp.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/stereotest.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/stereotest.cpp --- test/CMakeFiles/test_runner.dir/stereoperceptiontest.cpp.o --- [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/stereoperceptiontest.cpp.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/stereoperceptiontest.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/stereoperceptiontest.cpp --- src/GUI/CMakeFiles/obgui.dir/all --- --- bin/obgui --- [ 93%] Linking CXX executable ../../bin/obgui cd /construction/science/openbabel/.build/src/GUI && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/obgui.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG CMakeFiles/obgui.dir/OBGUI.cpp.o CMakeFiles/obgui.dir/stdwx.cpp.o CMakeFiles/obgui.dir/optswx.cpp.o -o ../../bin/obgui -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib ../../lib/libopenbabel.so.7.0.0 -L/usr/local/lib -pthread -lwx_baseu-3.0 -lwx_gtk3u_core-3.0 -lwx_gtk3u_adv-3.0 /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 93%] Built target obgui --- test/CMakeFiles/test_runner.dir/all --- --- test/CMakeFiles/test_runner.dir/tautomertest.cpp.o --- --- test/CMakeFiles/test_runner.dir/tetrahedraltest.cpp.o --- --- test/CMakeFiles/test_runner.dir/tautomertest.cpp.o --- [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/tautomertest.cpp.o --- test/CMakeFiles/test_runner.dir/tetrahedraltest.cpp.o --- [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/tetrahedraltest.cpp.o --- test/CMakeFiles/test_runner.dir/tautomertest.cpp.o --- cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/tautomertest.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/tautomertest.cpp --- test/CMakeFiles/test_runner.dir/tetrahedraltest.cpp.o --- cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/tetrahedraltest.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/tetrahedraltest.cpp --- test/CMakeFiles/test_runner.dir/tetranonplanartest.cpp.o --- [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/tetranonplanartest.cpp.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/tetranonplanartest.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/tetranonplanartest.cpp --- test/CMakeFiles/test_runner.dir/tetraplanartest.cpp.o --- [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/tetraplanartest.cpp.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/tetraplanartest.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/tetraplanartest.cpp --- test/CMakeFiles/test_runner.dir/uniqueidtest.cpp.o --- [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/uniqueidtest.cpp.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/uniqueidtest.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/uniqueidtest.cpp --- test/CMakeFiles/test_runner.dir/maereadertest.cpp.o --- [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/maereadertest.cpp.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/maereadertest.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/maereadertest.cpp --- test/CMakeFiles/test_runner.dir/aromatest.cpp.o --- --- test/CMakeFiles/test_runner.dir/atom.cpp.o --- --- test/CMakeFiles/test_runner.dir/aromatest.cpp.o --- [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/aromatest.cpp.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/aromatest.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/aromatest.cpp --- test/CMakeFiles/test_runner.dir/atom.cpp.o --- [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/atom.cpp.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/atom.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/atom.cpp --- test/CMakeFiles/test_runner.dir/bond.cpp.o --- [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/bond.cpp.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/bond.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/bond.cpp --- test/CMakeFiles/test_runner.dir/cansmi.cpp.o --- [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/cansmi.cpp.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/cansmi.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/cansmi.cpp --- test/CMakeFiles/test_runner.dir/charge_mmff94.cpp.o --- [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/charge_mmff94.cpp.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/charge_mmff94.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/charge_mmff94.cpp --- test/CMakeFiles/test_runner.dir/charge_gasteiger.cpp.o --- [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/charge_gasteiger.cpp.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/charge_gasteiger.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/charge_gasteiger.cpp --- test/CMakeFiles/test_runner.dir/conversion.cpp.o --- [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/conversion.cpp.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/conversion.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/conversion.cpp --- test/CMakeFiles/test_runner.dir/datatest.cpp.o --- [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/datatest.cpp.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/datatest.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/datatest.cpp --- test/CMakeFiles/test_runner.dir/ffgaff.cpp.o --- [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/ffgaff.cpp.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/ffgaff.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/ffgaff.cpp --- test/CMakeFiles/test_runner.dir/ffghemical.cpp.o --- [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/ffghemical.cpp.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/ffghemical.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/ffghemical.cpp --- test/CMakeFiles/test_runner.dir/ffmmff94.cpp.o --- [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/ffmmff94.cpp.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/ffmmff94.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/ffmmff94.cpp --- test/CMakeFiles/test_runner.dir/ffuff.cpp.o --- [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/ffuff.cpp.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/ffuff.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/ffuff.cpp --- test/CMakeFiles/test_runner.dir/formalcharge.cpp.o --- [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/formalcharge.cpp.o --- test/CMakeFiles/test_runner.dir/format.cpp.o --- --- test/CMakeFiles/test_runner.dir/formalcharge.cpp.o --- cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/formalcharge.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/formalcharge.cpp --- test/CMakeFiles/test_runner.dir/format.cpp.o --- [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/format.cpp.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/format.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/format.cpp --- test/CMakeFiles/test_runner.dir/formula.cpp.o --- [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/formula.cpp.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/formula.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/formula.cpp --- test/CMakeFiles/test_runner.dir/internalcoord.cpp.o --- [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/internalcoord.cpp.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/internalcoord.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/internalcoord.cpp --- test/CMakeFiles/test_runner.dir/invalidsmarts.cpp.o --- [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmarts.cpp.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/invalidsmarts.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/invalidsmarts.cpp --- test/CMakeFiles/test_runner.dir/invalidsmiles.cpp.o --- [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmiles.cpp.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/invalidsmiles.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/invalidsmiles.cpp --- test/CMakeFiles/test_runner.dir/iterators.cpp.o --- [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/iterators.cpp.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/iterators.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/iterators.cpp --- test/CMakeFiles/test_runner.dir/logp_psa.cpp.o --- [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/logp_psa.cpp.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS 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-DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/math.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/math.cpp --- test/CMakeFiles/test_runner.dir/mol.cpp.o --- [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/mol.cpp.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/mol.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/mol.cpp --- test/CMakeFiles/test_runner.dir/pdbreadfile.cpp.o --- [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/pdbreadfile.cpp.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 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/usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/phmodel.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/phmodel.cpp --- test/CMakeFiles/test_runner.dir/residue.cpp.o --- [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/residue.cpp.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/residue.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/residue.cpp --- test/CMakeFiles/test_runner.dir/ringtest.cpp.o --- [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/ringtest.cpp.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/ringtest.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/ringtest.cpp --- test/CMakeFiles/test_runner.dir/smartstest.cpp.o --- [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartstest.cpp.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS 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98%] Building CXX object test/CMakeFiles/test_runner.dir/smilesmatch.cpp.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/smilesmatch.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/smilesmatch.cpp --- test/CMakeFiles/test_runner.dir/unitcell.cpp.o --- [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/unitcell.cpp.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/unitcell.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/unitcell.cpp --- test/CMakeFiles/test_runner.dir/cmlreadfile.cpp.o --- [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/cmlreadfile.cpp.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/cmlreadfile.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/cmlreadfile.cpp --- test/CMakeFiles/test_runner.dir/obtest.cpp.o --- [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/obtest.cpp.o cd /construction/science/openbabel/.build/test && /usr/bin/c++ -DFORMATDIR=\"/construction/science/openbabel/.build/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/construction/science/openbabel/openbabel-3.1.1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/construction/science/openbabel/.build/include -I/construction/science/openbabel/openbabel-3.1.1/data -I/construction/science/openbabel/openbabel-3.1.1/include -I/usr/local/include/eigen3 -I/construction/science/openbabel/openbabel-3.1.1/test -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG -fPIE -pthread -std=gnu++11 -o CMakeFiles/test_runner.dir/obtest.cpp.o -c /construction/science/openbabel/openbabel-3.1.1/test/obtest.cpp --- bin/test_runner --- [ 99%] Linking CXX executable ../bin/test_runner cd /construction/science/openbabel/.build/test && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/test_runner.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -pthread -pipe -O2 -fno-strict-aliasing -Wno-narrowing -std=c++11 -O3 -DNDEBUG CMakeFiles/test_runner.dir/test_runner.cpp.o 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../bin/test_runner -L/usr/local/lib -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/openbabel/.build/lib ../lib/libopenbabel.so.7.0.0 /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz -pthread [ 99%] Built target test_runner --- scripts/CMakeFiles/bindings_python.dir/all --- /construction/science/openbabel/openbabel-3.1.1/scripts/python/openbabel/openbabel-python.cpp: In function 'void SWIG_Python_addvarlink(PyObject*, char*, PyObject* (*)(), int (*)(PyObject*))': /construction/science/openbabel/openbabel-3.1.1/scripts/python/openbabel/openbabel-python.cpp:48604:16: warning: 'char* strncpy(char*, const char*, size_t)' specified bound depends on the length of the source argument [-Wstringop-overflow=] strncpy(gv->name,name,size); ~~~~~~~^~~~~~~~~~~~~~~~~~~~ /construction/science/openbabel/openbabel-3.1.1/scripts/python/openbabel/openbabel-python.cpp:48601:27: note: length computed here size_t size = strlen(name)+1; ~~~~~~^~~~~~ --- lib/_openbabel.so --- 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------------------------------------------------------------------------------- ===> openbabel-3.1.1 depends on file: /usr/local/bin/python3.7 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for openbabel-3.1.1 ===> openbabel-3.1.1 depends on file: /usr/local/bin/python3.7 - found ===> Generating temporary packing list /usr/local/bin/cmake -S/construction/science/openbabel/openbabel-3.1.1 -B/construction/science/openbabel/.build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/local/bin/cmake -E cmake_progress_start /construction/science/openbabel/.build/CMakeFiles /construction/science/openbabel/.build//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f src/CMakeFiles/openbabel.dir/build.make src/CMakeFiles/openbabel.dir/depend cd /construction/science/openbabel/.build && 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src/formats/CMakeFiles/xmlformat.dir/build.make src/formats/CMakeFiles/xmlformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/xmlformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/xmlformat.dir/build.make src/formats/CMakeFiles/xmlformat.dir/build [ 27%] Built target xmlformat /usr/bin/make -f src/formats/CMakeFiles/cmlformat.dir/build.make src/formats/CMakeFiles/cmlformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build 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xyzformat /usr/bin/make -f src/formats/CMakeFiles/viewmolformat.dir/build.make src/formats/CMakeFiles/viewmolformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/viewmolformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/viewmolformat.dir/build.make src/formats/CMakeFiles/viewmolformat.dir/build [ 30%] Built target viewmolformat /usr/bin/make -f src/formats/CMakeFiles/yasaraformat.dir/build.make src/formats/CMakeFiles/yasaraformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats 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/construction/science/openbabel/.build/src/formats/CMakeFiles/mdffformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/mdffformat.dir/build.make src/formats/CMakeFiles/mdffformat.dir/build [ 38%] Built target mdffformat /usr/bin/make -f src/formats/CMakeFiles/xedformat.dir/build.make src/formats/CMakeFiles/xedformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/xedformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/xedformat.dir/build.make src/formats/CMakeFiles/xedformat.dir/build [ 38%] Built target xedformat /usr/bin/make -f src/formats/CMakeFiles/lpmdformat.dir/build.make src/formats/CMakeFiles/lpmdformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/lpmdformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/lpmdformat.dir/build.make src/formats/CMakeFiles/lpmdformat.dir/build [ 39%] Built target lpmdformat /usr/bin/make -f src/formats/CMakeFiles/gromos96format.dir/build.make src/formats/CMakeFiles/gromos96format.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/gromos96format.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/gromos96format.dir/build.make src/formats/CMakeFiles/gromos96format.dir/build [ 40%] Built target gromos96format /usr/bin/make -f src/formats/CMakeFiles/ghemicalformat.dir/build.make src/formats/CMakeFiles/ghemicalformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/ghemicalformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/ghemicalformat.dir/build.make src/formats/CMakeFiles/ghemicalformat.dir/build [ 40%] Built target ghemicalformat /usr/bin/make -f src/formats/CMakeFiles/pubchemjsonformat.dir/build.make src/formats/CMakeFiles/pubchemjsonformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/pubchemjsonformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/pubchemjsonformat.dir/build.make src/formats/CMakeFiles/pubchemjsonformat.dir/build [ 41%] Built target pubchemjsonformat /usr/bin/make -f src/formats/CMakeFiles/gausszmatformat.dir/build.make src/formats/CMakeFiles/gausszmatformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/gausszmatformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/gausszmatformat.dir/build.make src/formats/CMakeFiles/gausszmatformat.dir/build [ 42%] Built target gausszmatformat /usr/bin/make -f src/formats/CMakeFiles/gausscubeformat.dir/build.make src/formats/CMakeFiles/gausscubeformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/gausscubeformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/gausscubeformat.dir/build.make src/formats/CMakeFiles/gausscubeformat.dir/build [ 43%] Built target gausscubeformat /usr/bin/make -f src/formats/CMakeFiles/adfformat.dir/build.make src/formats/CMakeFiles/adfformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/adfformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/adfformat.dir/build.make src/formats/CMakeFiles/adfformat.dir/build [ 43%] Built target adfformat /usr/bin/make -f src/formats/CMakeFiles/cdxmlformat.dir/build.make src/formats/CMakeFiles/cdxmlformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build 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src/formats/CMakeFiles/asciiformat.dir/build.make src/formats/CMakeFiles/asciiformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/asciiformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/asciiformat.dir/build.make src/formats/CMakeFiles/asciiformat.dir/build [ 44%] Built target asciiformat /usr/bin/make -f src/formats/CMakeFiles/rxnformat.dir/build.make src/formats/CMakeFiles/rxnformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/rxnformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/rxnformat.dir/build.make src/formats/CMakeFiles/rxnformat.dir/build [ 45%] Built target rxnformat /usr/bin/make -f src/formats/CMakeFiles/crystal09format.dir/build.make src/formats/CMakeFiles/crystal09format.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/crystal09format.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/crystal09format.dir/build.make src/formats/CMakeFiles/crystal09format.dir/build [ 45%] Built target crystal09format /usr/bin/make -f src/formats/CMakeFiles/chemkinformat.dir/build.make src/formats/CMakeFiles/chemkinformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/chemkinformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/chemkinformat.dir/build.make src/formats/CMakeFiles/chemkinformat.dir/build [ 45%] Built target chemkinformat /usr/bin/make -f src/formats/CMakeFiles/jaguarformat.dir/build.make src/formats/CMakeFiles/jaguarformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/jaguarformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/jaguarformat.dir/build.make src/formats/CMakeFiles/jaguarformat.dir/build [ 45%] Built target jaguarformat /usr/bin/make -f src/formats/CMakeFiles/aoforceformat.dir/build.make src/formats/CMakeFiles/aoforceformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/aoforceformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/aoforceformat.dir/build.make src/formats/CMakeFiles/aoforceformat.dir/build [ 46%] Built target aoforceformat /usr/bin/make -f src/formats/CMakeFiles/pubchem.dir/build.make src/formats/CMakeFiles/pubchem.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/pubchem.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/pubchem.dir/build.make src/formats/CMakeFiles/pubchem.dir/build [ 46%] Built target pubchem /usr/bin/make -f src/formats/CMakeFiles/turbomoleformat.dir/build.make src/formats/CMakeFiles/turbomoleformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/turbomoleformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/turbomoleformat.dir/build.make src/formats/CMakeFiles/turbomoleformat.dir/build [ 47%] Built target turbomoleformat /usr/bin/make -f src/formats/CMakeFiles/abinitformat.dir/build.make src/formats/CMakeFiles/abinitformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/abinitformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/abinitformat.dir/build.make src/formats/CMakeFiles/abinitformat.dir/build [ 47%] Built target abinitformat /usr/bin/make -f src/formats/CMakeFiles/acesformat.dir/build.make src/formats/CMakeFiles/acesformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/acesformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/acesformat.dir/build.make src/formats/CMakeFiles/acesformat.dir/build [ 48%] Built target acesformat /usr/bin/make -f src/formats/CMakeFiles/alchemyformat.dir/build.make src/formats/CMakeFiles/alchemyformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/alchemyformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/alchemyformat.dir/build.make src/formats/CMakeFiles/alchemyformat.dir/build [ 49%] Built target alchemyformat /usr/bin/make -f src/formats/CMakeFiles/smilesformat.dir/build.make src/formats/CMakeFiles/smilesformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/smilesformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/smilesformat.dir/build.make src/formats/CMakeFiles/smilesformat.dir/build [ 49%] Built target smilesformat /usr/bin/make -f src/formats/CMakeFiles/CSRformat.dir/build.make src/formats/CMakeFiles/CSRformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/CSRformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/CSRformat.dir/build.make src/formats/CMakeFiles/CSRformat.dir/build [ 49%] Built target CSRformat /usr/bin/make -f src/formats/CMakeFiles/confabreport.dir/build.make src/formats/CMakeFiles/confabreport.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/confabreport.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/confabreport.dir/build.make src/formats/CMakeFiles/confabreport.dir/build [ 50%] Built target confabreport /usr/bin/make -f src/formats/CMakeFiles/pdbformat.dir/build.make src/formats/CMakeFiles/pdbformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/pdbformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/pdbformat.dir/build.make src/formats/CMakeFiles/pdbformat.dir/build [ 50%] Built target pdbformat /usr/bin/make -f src/formats/CMakeFiles/wlnformat.dir/build.make src/formats/CMakeFiles/wlnformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/wlnformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/wlnformat.dir/build.make src/formats/CMakeFiles/wlnformat.dir/build [ 51%] Built target wlnformat /usr/bin/make -f src/formats/CMakeFiles/painterformat.dir/build.make src/formats/CMakeFiles/painterformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats 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src/formats/CMakeFiles/povrayformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/povrayformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/povrayformat.dir/build.make src/formats/CMakeFiles/povrayformat.dir/build [ 52%] Built target povrayformat /usr/bin/make -f src/formats/CMakeFiles/shelxformat.dir/build.make src/formats/CMakeFiles/shelxformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/shelxformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/shelxformat.dir/build.make src/formats/CMakeFiles/shelxformat.dir/build [ 52%] Built target shelxformat /usr/bin/make -f src/formats/CMakeFiles/xsfformat.dir/build.make src/formats/CMakeFiles/xsfformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/xsfformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/xsfformat.dir/build.make src/formats/CMakeFiles/xsfformat.dir/build [ 52%] Built target xsfformat /usr/bin/make -f src/formats/CMakeFiles/inchiformat.dir/build.make src/formats/CMakeFiles/inchiformat.dir/depend cd 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/construction/science/openbabel/.build/src/formats/CMakeFiles/mdlformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/mdlformat.dir/build.make src/formats/CMakeFiles/mdlformat.dir/build [ 53%] Built target mdlformat /usr/bin/make -f src/formats/CMakeFiles/posformat.dir/build.make src/formats/CMakeFiles/posformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/posformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/posformat.dir/build.make src/formats/CMakeFiles/posformat.dir/build [ 53%] Built target posformat /usr/bin/make -f src/formats/CMakeFiles/lmpdatformat.dir/build.make src/formats/CMakeFiles/lmpdatformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/lmpdatformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/lmpdatformat.dir/build.make src/formats/CMakeFiles/lmpdatformat.dir/build [ 53%] Built target lmpdatformat /usr/bin/make -f src/formats/CMakeFiles/fastsearchformat.dir/build.make src/formats/CMakeFiles/fastsearchformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/fastsearchformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/fastsearchformat.dir/build.make src/formats/CMakeFiles/fastsearchformat.dir/build [ 53%] Built target fastsearchformat /usr/bin/make -f src/formats/CMakeFiles/thermoformat.dir/build.make src/formats/CMakeFiles/thermoformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/thermoformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/thermoformat.dir/build.make src/formats/CMakeFiles/thermoformat.dir/build [ 54%] Built target thermoformat /usr/bin/make -f src/formats/CMakeFiles/gulpformat.dir/build.make src/formats/CMakeFiles/gulpformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/gulpformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/gulpformat.dir/build.make src/formats/CMakeFiles/gulpformat.dir/build [ 54%] Built target gulpformat /usr/bin/make -f src/formats/CMakeFiles/mmodformat.dir/build.make src/formats/CMakeFiles/mmodformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/mmodformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/mmodformat.dir/build.make src/formats/CMakeFiles/mmodformat.dir/build [ 54%] Built target mmodformat /usr/bin/make -f src/formats/CMakeFiles/mol2format.dir/build.make src/formats/CMakeFiles/mol2format.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/mol2format.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/mol2format.dir/build.make src/formats/CMakeFiles/mol2format.dir/build [ 54%] Built target mol2format /usr/bin/make -f src/formats/CMakeFiles/MNAformat.dir/build.make src/formats/CMakeFiles/MNAformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/MNAformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/MNAformat.dir/build.make src/formats/CMakeFiles/MNAformat.dir/build [ 54%] Built target MNAformat /usr/bin/make -f src/formats/CMakeFiles/png2format.dir/build.make src/formats/CMakeFiles/png2format.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/png2format.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/png2format.dir/build.make src/formats/CMakeFiles/png2format.dir/build [ 55%] Built target png2format /usr/bin/make -f src/formats/CMakeFiles/balstformat.dir/build.make src/formats/CMakeFiles/balstformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/balstformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/balstformat.dir/build.make src/formats/CMakeFiles/balstformat.dir/build [ 56%] Built target balstformat /usr/bin/make -f src/formats/CMakeFiles/dmolformat.dir/build.make src/formats/CMakeFiles/dmolformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/dmolformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/dmolformat.dir/build.make src/formats/CMakeFiles/dmolformat.dir/build [ 56%] Built target dmolformat /usr/bin/make -f src/formats/CMakeFiles/castepformat.dir/build.make src/formats/CMakeFiles/castepformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/castepformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/castepformat.dir/build.make src/formats/CMakeFiles/castepformat.dir/build [ 57%] Built target castepformat /usr/bin/make -f src/formats/CMakeFiles/gamessukformat.dir/build.make src/formats/CMakeFiles/gamessukformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/gamessukformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/gamessukformat.dir/build.make src/formats/CMakeFiles/gamessukformat.dir/build [ 57%] Built target gamessukformat /usr/bin/make -f src/formats/CMakeFiles/fpsformat.dir/build.make src/formats/CMakeFiles/fpsformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/fpsformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/fpsformat.dir/build.make src/formats/CMakeFiles/fpsformat.dir/build [ 58%] Built target fpsformat /usr/bin/make -f src/formats/CMakeFiles/nulformat.dir/build.make src/formats/CMakeFiles/nulformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats 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src/formats/CMakeFiles/unichemformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/unichemformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/unichemformat.dir/build.make src/formats/CMakeFiles/unichemformat.dir/build [ 59%] Built target unichemformat /usr/bin/make -f src/formats/CMakeFiles/molreport.dir/build.make src/formats/CMakeFiles/molreport.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/molreport.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/molreport.dir/build.make src/formats/CMakeFiles/molreport.dir/build [ 60%] Built target molreport /usr/bin/make -f src/formats/CMakeFiles/stlformat.dir/build.make src/formats/CMakeFiles/stlformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/stlformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/stlformat.dir/build.make src/formats/CMakeFiles/stlformat.dir/build [ 60%] Built target stlformat /usr/bin/make -f src/formats/CMakeFiles/titleformat.dir/build.make src/formats/CMakeFiles/titleformat.dir/depend cd 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/construction/science/openbabel/.build/src/formats/CMakeFiles/mopacformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/mopacformat.dir/build.make src/formats/CMakeFiles/mopacformat.dir/build [ 60%] Built target mopacformat /usr/bin/make -f src/formats/CMakeFiles/nwchemformat.dir/build.make src/formats/CMakeFiles/nwchemformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/nwchemformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/nwchemformat.dir/build.make src/formats/CMakeFiles/nwchemformat.dir/build [ 61%] Built target nwchemformat /usr/bin/make -f src/formats/CMakeFiles/APIInterface.dir/build.make src/formats/CMakeFiles/APIInterface.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/APIInterface.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/APIInterface.dir/build.make src/formats/CMakeFiles/APIInterface.dir/build [ 61%] Built target APIInterface /usr/bin/make -f src/formats/CMakeFiles/qchemformat.dir/build.make src/formats/CMakeFiles/qchemformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats 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src/formats/CMakeFiles/reportformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/reportformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/reportformat.dir/build.make src/formats/CMakeFiles/reportformat.dir/build [ 64%] Built target reportformat /usr/bin/make -f src/formats/CMakeFiles/pngformat.dir/build.make src/formats/CMakeFiles/pngformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats 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cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/fchkformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/fchkformat.dir/build.make src/formats/CMakeFiles/fchkformat.dir/build [ 71%] Built target fchkformat /usr/bin/make -f src/formats/CMakeFiles/carformat.dir/build.make src/formats/CMakeFiles/carformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats 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cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats /construction/science/openbabel/.build/src/formats/CMakeFiles/hinformat.dir/DependInfo.cmake /usr/bin/make -f src/formats/CMakeFiles/hinformat.dir/build.make src/formats/CMakeFiles/hinformat.dir/build [ 74%] Built target hinformat /usr/bin/make -f src/formats/CMakeFiles/molproformat.dir/build.make src/formats/CMakeFiles/molproformat.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/formats /construction/science/openbabel/.build /construction/science/openbabel/.build/src/formats 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obtautomer /usr/bin/make -f src/GUI/CMakeFiles/obgui.dir/build.make src/GUI/CMakeFiles/obgui.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/src/GUI /construction/science/openbabel/.build /construction/science/openbabel/.build/src/GUI /construction/science/openbabel/.build/src/GUI/CMakeFiles/obgui.dir/DependInfo.cmake /usr/bin/make -f src/GUI/CMakeFiles/obgui.dir/build.make src/GUI/CMakeFiles/obgui.dir/build [ 88%] Built target obgui /usr/bin/make -f test/CMakeFiles/test_inchiwrite.dir/build.make test/CMakeFiles/test_inchiwrite.dir/depend cd /construction/science/openbabel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/openbabel/openbabel-3.1.1 /construction/science/openbabel/openbabel-3.1.1/test /construction/science/openbabel/.build /construction/science/openbabel/.build/test 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/construction/science/openbabel/stage/usr/local/bin/obspectrophore -- Installing: /construction/science/openbabel/stage/usr/local/bin/obrms -- Installing: /construction/science/openbabel/stage/usr/local/bin/obgui -- Installing: /construction/science/openbabel/stage/usr/local/bin/roundtrip -- Installing: /construction/science/openbabel/stage/usr/local/lib/python3.7/site-packages/openbabel/_openbabel.so -- Installing: /construction/science/openbabel/stage/usr/local/lib/python3.7/site-packages/openbabel/__init__.py -- Installing: /construction/science/openbabel/stage/usr/local/lib/python3.7/site-packages/openbabel/openbabel.py -- Installing: /construction/science/openbabel/stage/usr/local/lib/python3.7/site-packages/openbabel/pybel.py (cd /construction/science/openbabel/stage/usr/local && /usr/local/bin/python3.7 /usr/local/lib/python3.7/compileall.py -d /usr/local -f lib/python3.7/site-packages) Listing 'lib/python3.7/site-packages'... Listing 'lib/python3.7/site-packages/openbabel'... Compiling 'lib/python3.7/site-packages/openbabel/__init__.py'... Compiling 'lib/python3.7/site-packages/openbabel/openbabel.py'... Compiling 'lib/python3.7/site-packages/openbabel/pybel.py'... (cd /construction/science/openbabel/stage/usr/local && /usr/local/bin/python3.7 -O /usr/local/lib/python3.7/compileall.py -d /usr/local -f lib/python3.7/site-packages) Listing 'lib/python3.7/site-packages'... Listing 'lib/python3.7/site-packages/openbabel'... Compiling 'lib/python3.7/site-packages/openbabel/__init__.py'... Compiling 'lib/python3.7/site-packages/openbabel/openbabel.py'... Compiling 'lib/python3.7/site-packages/openbabel/pybel.py'... ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Error: /usr/local/lib/libinchi.so.0.4.1 is linked to /usr/local/lib/libpixman-1.so.0 from x11/pixman but it is not declared as a dependency Warning: you need USE_XORG+=pixman Error: /usr/local/lib/libinchi.so.0.4.1 is linked to /usr/local/lib/libfontconfig.so.1 from x11-fonts/fontconfig but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libfontconfig.so:x11-fonts/fontconfig Error: /usr/local/lib/libinchi.so.0.4.1 is linked to /usr/local/lib/libfreetype.so.6 from print/freetype2 but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libfreetype.so:print/freetype2 Error: /usr/local/lib/libinchi.so.0.4.1 is linked to /usr/local/lib/libpng16.so.16 from graphics/png but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libpng16.so:graphics/png Error: /usr/local/lib/libinchi.so.0.4.1 is linked to /usr/local/lib/libxcb-shm.so.0 from x11/libxcb but it is not declared as a dependency Warning: you need USE_XORG+=xcb Error: /usr/local/lib/libinchi.so.0.4.1 is linked to /usr/local/lib/libxcb.so.1 from x11/libxcb but it is not declared as a dependency Warning: you need USE_XORG+=xcb Error: /usr/local/lib/libinchi.so.0.4.1 is linked to /usr/local/lib/libxcb-render.so.0 from x11/libxcb but it is not declared as a dependency Warning: you need USE_XORG+=xcb Error: /usr/local/lib/libinchi.so.0.4.1 is linked to /usr/local/lib/libXrender.so.1 from x11/libXrender but it is not declared as a dependency Warning: you need USE_XORG+=xrender Error: /usr/local/lib/libinchi.so.0.4.1 is linked to /usr/local/lib/libX11.so.6 from x11/libX11 but it is not declared as a dependency Warning: you need USE_XORG+=x11 Error: /usr/local/lib/libinchi.so.0.4.1 is linked to /usr/local/lib/libXext.so.6 from x11/libXext but it is not declared as a dependency Warning: you need USE_XORG+=xext Error: /usr/local/lib/libinchi.so.0.4.1 is linked to /usr/local/lib/libicudata.so.68 from devel/icu but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libicudata.so:devel/icu Error: /usr/local/lib/libinchi.so.0.4.1 is linked to /usr/local/lib/libicui18n.so.68 from devel/icu but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libicui18n.so:devel/icu Error: /usr/local/lib/libinchi.so.0.4.1 is linked to /usr/local/lib/libicuuc.so.68 from devel/icu but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libicuuc.so:devel/icu Error: /usr/local/lib/libinchi.so.0.4.1 is linked to /usr/local/lib/libexpat.so.1 from textproc/expat2 but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libexpat.so:textproc/expat2 Error: /usr/local/lib/libinchi.so.0.4.1 is linked to /usr/local/lib/libintl.so.8 from devel/gettext-runtime but it is not declared as a dependency Warning: you need USES+=gettext-runtime Error: /usr/local/lib/libinchi.so.0.4.1 is linked to /usr/local/lib/libXau.so.6 from x11/libXau but it is not declared as a dependency Warning: you need USE_XORG+=xau Error: /usr/local/lib/libinchi.so.0.4.1 is linked to /usr/local/lib/libXdmcp.so.6 from x11/libXdmcp but it is not declared as a dependency Warning: you need USE_XORG+=xdmcp Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:46 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- ====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for openbabel-3.1.1 file sizes/checksums [335]: 0% file sizes/checksums [335]: 29% file sizes/checksums [335]: 59% file sizes/checksums [335]: 89% file sizes/checksums [335]: 100% packing files [335]: 0% packing files [335]: 29% packing files [335]: 59% packing files [335]: 89% packing files [335]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:01:03 TOTAL TIME 00:13:50