------------------------------------------------------------------------------- -- Phase: Environment ------------------------------------------------------------------------------- NO_DEPENDS=1 UNAME_r=5.9 UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=unknown UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 LANG=C HOME=/root USER=root TERM=dumb SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: showconfig ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ENV ------------------------------------------------------------------------------- MAKE=gmake PKG_CONFIG=pkgconf XDG_DATA_HOME=/construction/science/chemtool-devel XDG_CONFIG_HOME=/construction/science/chemtool-devel HOME=/construction/science/chemtool-devel TMPDIR="/tmp" PATH=/construction/science/chemtool-devel/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 CONFIG_SITE=/xports/Templates/config.site lt_cv_sys_max_cmd_len=262144 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ARGS ------------------------------------------------------------------------------- --enable-emf=yes --x-libraries=/usr/local/lib --x-includes=/usr/local/include --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ENV ------------------------------------------------------------------------------- XDG_DATA_HOME=/construction/science/chemtool-devel XDG_CONFIG_HOME=/construction/science/chemtool-devel HOME=/construction/science/chemtool-devel TMPDIR="/tmp" PATH=/construction/science/chemtool-devel/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-I/usr/local/include -I/usr/local/include/libEMF" LDFLAGS=" " LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ARGS ------------------------------------------------------------------------------- MAKE=gmake DESTDIR=/construction/science/chemtool-devel/stage SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: PLIST_SUB ------------------------------------------------------------------------------- GTK2_VERSION="2.10.0" GTK3_VERSION="3.0.0" OSREL=5.9 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/chemtool" EXAMPLESDIR="share/examples/chemtool" DATADIR="share/chemtool" WWWDIR="www/chemtool" ETCDIR="etc/chemtool" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: SUB_LIST ------------------------------------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/chemtool DOCSDIR=/usr/local/share/doc/chemtool EXAMPLESDIR=/usr/local/share/examples/chemtool WWWDIR=/usr/local/www/chemtool ETCDIR=/usr/local/etc/chemtool SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: /etc/make.conf ------------------------------------------------------------------------------- DPORTS_BUILDER=yes DISABLE_LICENSES=yes DEFAULT_VERSIONS=ssl=openssl FORCE_PACKAGE=yes DEVELOPER=yes USE_PACKAGE_DEPENDS_ONLY=yes PORTSDIR=/xports PORT_DBDIR=/options PKG_DBDIR=/var/db/pkg PKG_CACHEDIR=/var/cache/pkg PKG_SUFX=.txz DEVELOPER=1 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500906 OSVERSION=9999999 OSREL=5.9 _OSRELEASE=5.9-SYNTH DISTDIR=/distfiles WRKDIRPREFIX=/construction BATCH=yes PACKAGE_BUILDING=yes PKG_CREATE_VERBOSE=yes MAKE_JOBS_NUMBER=10 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/ncurses-6.2.20210116.txz Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/libtextstyle-0.21.txz Installing /packages/All/gettext-runtime-0.21.txz Installing /packages/All/gettext-tools-0.21.txz Installing /packages/All/gmake-4.3_2.txz Installing /packages/All/pkgconf-1.7.3,1.txz Installing /packages/All/libpthread-stubs-0.4.txz Installing /packages/All/libXau-1.0.9.txz Installing /packages/All/xorgproto-2020.1.txz Installing /packages/All/libXdmcp-1.1.3.txz Installing /packages/All/libxcb-1.14_1.txz Installing /packages/All/libX11-1.6.12,1.txz Installing /packages/All/libEMF-1.0.7_1.txz Installing /packages/All/pcre-8.44.txz Installing /packages/All/libffi-3.3_1.txz Installing /packages/All/libxml2-2.9.10_2.txz Installing /packages/All/libiconv-1.16.txz Installing /packages/All/expat-2.2.10.txz Installing /packages/All/readline-8.0.4_1.txz Installing /packages/All/openssl-1.1.1i,1.txz Installing /packages/All/python37-3.7.9_1.txz ===== Message from python37-3.7.9_1: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py37-gdbm databases/py-gdbm@py37 py37-sqlite3 databases/py-sqlite3@py37 py37-tkinter x11-toolkits/py-tkinter@py37 Installing /packages/All/glib-2.66.4_1,1.txz No schema files found: doing nothing. Installing /packages/All/atk-2.36.0.txz Installing /packages/All/libdaemon-0.14_1.txz Installing /packages/All/libICE-1.0.10,1.txz Installing /packages/All/libSM-1.2.3,1.txz Installing /packages/All/dbus-1.12.20_3.txz ===> Creating groups. Creating group 'messagebus' with gid '556'. ===> Creating users Creating user 'messagebus' with uid '556'. Installing /packages/All/dbus-glib-0.110.txz Installing /packages/All/gdbm-1.19.txz Installing /packages/All/libevent-2.1.12.txz Installing /packages/All/gnome_subr-1.0.txz Installing /packages/All/avahi-app-0.8.txz ===> Creating groups. Creating group 'avahi' with gid '558'. ===> Creating users Creating user 'avahi' with uid '558'. Installing /packages/All/gmp-6.2.1.txz Installing /packages/All/nettle-3.6.txz Installing /packages/All/libtasn1-4.16.0_1.txz Installing /packages/All/libunistring-0.9.10_1.txz Installing /packages/All/libidn2-2.3.0_1.txz Installing /packages/All/ca_root_nss-3.58.txz ===== Message from ca_root_nss-3.58: -- FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem Installing /packages/All/bash-5.1.4_1.txz Installing /packages/All/bash-completion-2.11,2.txz ===== Message from bash-completion-2.11,2: -- To enable the bash completion library, add the following to your .bashrc file: [[ $PS1 && -f /usr/local/share/bash-completion/bash_completion.sh ]] && \ source /usr/local/share/bash-completion/bash_completion.sh See /usr/local/share/doc/bash-completion/README.md for more information. Installing /packages/All/p11-kit-0.23.22.txz Installing /packages/All/tpm-emulator-0.7.4_2.txz ===> Creating groups. Creating group '_tss' with gid '601'. ===> Creating users Creating user '_tss' with uid '601'. Installing /packages/All/trousers-0.3.14_3.txz ===> Creating groups. Using existing group '_tss'. ===> Creating users Using existing user '_tss'. ===== Message from trousers-0.3.14_3: -- To run tcsd automatically, add the following line to /etc/rc.conf: tcsd_enable="YES" You might want to edit /usr/local/etc/tcsd.conf to reflect your setup. If you want to use tcsd with software TPM emulator, use the following configuration in /etc/rc.conf: tcsd_enable="YES" tcsd_mode="emulator" tpmd_enable="YES" To use TPM, add your_account to '_tss' group like following: # pw groupmod _tss -m your_account Installing /packages/All/gnutls-3.6.15.txz Installing /packages/All/libpaper-1.1.24.4.txz Installing /packages/All/cups-2.3.3_1.txz ===> Creating groups. Creating group 'cups' with gid '193'. ===> Creating users Creating user 'cups' with uid '193'. Installing /packages/All/png-1.6.37.txz Installing /packages/All/jbigkit-2.1_1.txz Installing /packages/All/jpeg-turbo-2.0.6.txz Installing /packages/All/tiff-4.2.0.txz Installing /packages/All/shared-mime-info-2.0.txz Installing /packages/All/gdk-pixbuf2-2.40.0.txz Installing /packages/All/freetype2-2.10.4.txz ===== Message from freetype2-2.10.4: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/site/index.html, if documentation was installed). Installing /packages/All/graphite2-1.3.14.txz Installing /packages/All/harfbuzz-2.7.4.txz Installing /packages/All/fontconfig-2.13.92_2,1.txz Running fc-cache to build fontconfig cache... Font directories: /usr/local/share/fonts /usr/local/lib/X11/fonts /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory fc-cache: succeeded Installing /packages/All/fribidi-1.0.10.txz Installing /packages/All/pixman-0.40.0_1.txz Installing /packages/All/libXext-1.3.4,1.txz Installing /packages/All/libXrender-0.9.10_2.txz Installing /packages/All/cairo-1.16.0_1,3.txz Installing /packages/All/libfontenc-1.1.4.txz Installing /packages/All/mkfontscale-1.2.1.txz Installing /packages/All/font-bh-ttf-1.0.3_4.txz Installing /packages/All/font-misc-meltho-1.0.3_4.txz Installing /packages/All/font-misc-ethiopic-1.0.4.txz Installing /packages/All/encodings-1.0.5,1.txz Installing /packages/All/dejavu-2.37_1.txz ===== Message from dejavu-2.37_1: -- Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. Installing /packages/All/xorg-fonts-truetype-7.7_1.txz Installing /packages/All/libXft-2.3.3.txz Installing /packages/All/pango-1.42.4_5.txz Installing /packages/All/hicolor-icon-theme-0.17.txz Installing /packages/All/gtk-update-icon-cache-3.24.24.txz Installing /packages/All/libXinerama-1.1.4_2,1.txz Installing /packages/All/libXfixes-5.0.3_2.txz Installing /packages/All/libXi-1.7.10,1.txz Installing /packages/All/libXrandr-1.5.2.txz Installing /packages/All/libXcursor-1.2.0.txz Installing /packages/All/libXdamage-1.1.5.txz Installing /packages/All/libXcomposite-0.4.5,1.txz Installing /packages/All/gtk2-2.24.33.txz Installing /packages/All/wayland-1.18.0.txz Installing /packages/All/liblz4-1.9.3,1.txz Installing /packages/All/zstd-1.4.5_1.txz Installing /packages/All/pciids-20201127.txz Installing /packages/All/libpciaccess-0.16.txz Installing /packages/All/libdrm-2.4.101.txz Installing /packages/All/libunwind-20200331_1.txz Installing /packages/All/libxshmfence-1.3.txz Installing /packages/All/libXxf86vm-1.1.4_3.txz Installing /packages/All/mesa-libs-20.2.3.txz Installing /packages/All/libGLU-9.0.1.txz Installing /packages/All/freeglut-3.0.0_2.txz ===== Message from freeglut-3.0.0_2: -- Joystick support is untested and it is unknown if it works. Do not hesitate to contact x11@FreeBSD.org if this causes issues. Installing /packages/All/libXt-1.2.0,1.txz Installing /packages/All/libXmu-1.1.3,1.txz Installing /packages/All/jasper-2.0.24.txz Installing /packages/All/perl5-5.32.0_1.txz Installing /packages/All/netpbm-10.91.01.txz ===== Message from netpbm-10.91.01: -- ===> NOTICE: The netpbm port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Installing /packages/All/libidn-1.35.txz Installing /packages/All/jbig2dec-0.19.txz Installing /packages/All/poppler-data-0.4.10.txz Installing /packages/All/ghostscript9-agpl-base-9.52_13.txz ===== Message from ghostscript9-agpl-base-9.52_13: -- This package installs a script named dvipdf that depends on dvips. If you want to use this script you need to install print/tex-dvipsk. Installing /packages/All/libXpm-3.5.13.txz Installing /packages/All/fig2dev-3.2.7_1.txz SUCCEEDED 00:01:07 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- ===> NOTICE: The chemtool port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> chemtool-devel-1.7.20050716_10 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> NOTICE: The chemtool port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> chemtool-devel-1.7.20050716_10 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by chemtool-devel-1.7.20050716_10 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> NOTICE: The chemtool port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> chemtool-devel-1.7.20050716_10 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by chemtool-devel-1.7.20050716_10 for building => SHA256 Checksum OK for ct17a15.tgz. SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> NOTICE: The chemtool port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> chemtool-devel-1.7.20050716_10 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by chemtool-devel-1.7.20050716_10 for building ===> Extracting for chemtool-devel-1.7.20050716_10 => SHA256 Checksum OK for ct17a15.tgz. Extracted Memory Use: 2.53M SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for chemtool-devel-1.7.20050716_10 ===> Applying ports patches for chemtool-devel-1.7.20050716_10 from /xports/science/chemtool-devel/files SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> chemtool-devel-1.7.20050716_10 depends on executable: msgfmt - found ===> chemtool-devel-1.7.20050716_10 depends on package: gmake>=4.3 - found ===> chemtool-devel-1.7.20050716_10 depends on package: pkgconf>=1.3.0_1 - found ===> chemtool-devel-1.7.20050716_10 depends on file: /usr/local/libdata/pkgconfig/x11.pc - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- ===> chemtool-devel-1.7.20050716_10 depends on shared library: libEMF.so - found (/usr/local/lib/libEMF.so) ===> chemtool-devel-1.7.20050716_10 depends on shared library: libintl.so - found (/usr/local/lib/libintl.so) ===> chemtool-devel-1.7.20050716_10 depends on shared library: libatk-1.0.so - found (/usr/local/lib/libatk-1.0.so) ===> chemtool-devel-1.7.20050716_10 depends on shared library: libglib-2.0.so - found (/usr/local/lib/libglib-2.0.so) ===> chemtool-devel-1.7.20050716_10 depends on shared library: libintl.so - found (/usr/local/lib/libintl.so) ===> chemtool-devel-1.7.20050716_10 depends on shared library: libgtk-x11-2.0.so - found (/usr/local/lib/libgtk-x11-2.0.so) ===> chemtool-devel-1.7.20050716_10 depends on shared library: libpango-1.0.so - found (/usr/local/lib/libpango-1.0.so) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> chemtool-devel-1.7.20050716_10 depends on executable: msgfmt - found ===> chemtool-devel-1.7.20050716_10 depends on package: gmake>=4.3 - found ===> chemtool-devel-1.7.20050716_10 depends on package: pkgconf>=1.3.0_1 - found ===> chemtool-devel-1.7.20050716_10 depends on file: /usr/local/libdata/pkgconfig/x11.pc - found ===> chemtool-devel-1.7.20050716_10 depends on shared library: libEMF.so - found (/usr/local/lib/libEMF.so) ===> chemtool-devel-1.7.20050716_10 depends on shared library: libintl.so - found (/usr/local/lib/libintl.so) ===> chemtool-devel-1.7.20050716_10 depends on shared library: libatk-1.0.so - found (/usr/local/lib/libatk-1.0.so) ===> chemtool-devel-1.7.20050716_10 depends on shared library: libglib-2.0.so - found (/usr/local/lib/libglib-2.0.so) ===> chemtool-devel-1.7.20050716_10 depends on shared library: libintl.so - found (/usr/local/lib/libintl.so) ===> chemtool-devel-1.7.20050716_10 depends on shared library: libgtk-x11-2.0.so - found (/usr/local/lib/libgtk-x11-2.0.so) ===> chemtool-devel-1.7.20050716_10 depends on shared library: libpango-1.0.so - found (/usr/local/lib/libpango-1.0.so) ===> Configuring for chemtool-devel-1.7.20050716_10 configure: loading site script /xports/Templates/config.site checking for gcc... cc checking for C compiler default output... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ANSI C... none needed checking whether gmake sets ${MAKE}... yes checking for a BSD-compatible install... /usr/bin/install -c checking for cp... /bin/cp checking for rm... /bin/rm checking for main in -libs... no checking for acos in -lm... yes checking for pkg-config... /usr/local/bin/pkg-config checking for GTK version and compile options ... -I/usr/local/include/gtk-2.0 -I/usr/local/include/pango-1.0 -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/usr/local/include/fribidi -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -I/usr/local/include/freetype2 -I/usr/local/include/libpng16 -I/usr/local/include/harfbuzz -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/atk-1.0 -D_THREAD_SAFE -pthread checking how to run the C preprocessor... cpp checking for X... libraries /usr/local/lib, headers /usr/local/include checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for egrep... grep -E checking for ANSI C header files... (cached) yes checking for sys/types.h... (cached) yes checking for sys/stat.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for memory.h... (cached) yes checking for strings.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for strings.h... (cached) yes checking for unistd.h... (cached) yes checking libintl.h usability... yes checking libintl.h presence... yes checking for libintl.h... yes checking for an ANSI C-conforming const... yes checking for size_t... (cached) yes checking whether struct tm is in sys/time.h or time.h... time.h checking for working POSIX fnmatch... yes checking for working memcmp... yes checking for stdlib.h... (cached) yes checking for unistd.h... (cached) yes checking for getpagesize... (cached) yes checking for working mmap... yes checking for getcwd... (cached) yes checking for getwd... (cached) yes checking for mkdir... yes checking for strtod... (cached) yes checking for strtol... (cached) yes checking for KDE ... no checking for GNOME ... no checking for MySQL support... no checking whether to enable locales... yes checking whether to enable libundo... yes checking whether to use pull-down menus... yes checking whether to enable emf output... yes checking whether standard GTK dialogs should be used instead of our own... yes configure: creating ./config.status config.status: creating Makefile config.status: creating src-cht/Makefile config.status: creating config.h SUCCEEDED 00:00:04 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for chemtool-devel-1.7.20050716_10 gmake[1]: Entering directory '/construction/science/chemtool-devel/chemtool-1.7alpha15' cc -O2 -Wall -Wunused -Wuninitialized -pipe -O2 -fno-strict-aliasing -I/usr/local/include -I/usr/local/include/libEMF -I. -DGTK2 -I/usr/local/include/gtk-2.0 -I/usr/local/include/pango-1.0 -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/usr/local/include/fribidi -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -I/usr/local/include/freetype2 -I/usr/local/include/libpng16 -I/usr/local/include/harfbuzz -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/atk-1.0 -D_THREAD_SAFE -pthread -DHAVE_CONFIG_H -DLOCALEDIR=\"/usr/local/share/locale\" -c -o main.o main.c In file included from /usr/local/include/gtk-2.0/gtk/gtkobject.h:37, from /usr/local/include/gtk-2.0/gtk/gtkwidget.h:36, from /usr/local/include/gtk-2.0/gtk/gtkcontainer.h:35, from /usr/local/include/gtk-2.0/gtk/gtkbin.h:35, from /usr/local/include/gtk-2.0/gtk/gtkwindow.h:36, from /usr/local/include/gtk-2.0/gtk/gtkdialog.h:35, from /usr/local/include/gtk-2.0/gtk/gtkaboutdialog.h:32, from /usr/local/include/gtk-2.0/gtk/gtk.h:33, from ct.h:9, from main.c:31: /usr/local/include/gtk-2.0/gtk/gtktypeutils.h:236:1: warning: 'GTypeDebugFlags' is deprecated [-Wdeprecated-declarations] void gtk_type_init (GTypeDebugFlags debug_flags); ^~~~ In file included from /usr/local/include/glib-2.0/gobject/gobject.h:24, from /usr/local/include/glib-2.0/gobject/gbinding.h:29, from /usr/local/include/glib-2.0/glib-object.h:22, from /usr/local/include/glib-2.0/gio/gioenums.h:28, from /usr/local/include/glib-2.0/gio/giotypes.h:28, from /usr/local/include/glib-2.0/gio/gio.h:26, from /usr/local/include/gtk-2.0/gdk/gdkapplaunchcontext.h:30, from /usr/local/include/gtk-2.0/gdk/gdk.h:32, from /usr/local/include/gtk-2.0/gdk/gdkprivate.h:30, from /usr/local/include/gtk-2.0/gdk/gdkx.h:30, from main.c:18: /usr/local/include/glib-2.0/gobject/gtype.h:679:1: note: declared here { ^ In file included from /usr/local/include/gtk-2.0/gtk/gtktoolitem.h:31, from /usr/local/include/gtk-2.0/gtk/gtktoolbutton.h:30, from /usr/local/include/gtk-2.0/gtk/gtkmenutoolbutton.h:30, from /usr/local/include/gtk-2.0/gtk/gtk.h:126, from ct.h:9, from main.c:31: /usr/local/include/gtk-2.0/gtk/gtktooltips.h:73:3: warning: 'GTimeVal' is deprecated: Use 'GDateTime' instead [-Wdeprecated-declarations] GTimeVal last_popdown; ^~~~~~~~ In file included from /usr/local/include/glib-2.0/glib/galloca.h:32, from /usr/local/include/glib-2.0/glib.h:30, from /usr/local/include/glib-2.0/gobject/gbinding.h:28, from /usr/local/include/glib-2.0/glib-object.h:22, from /usr/local/include/glib-2.0/gio/gioenums.h:28, from /usr/local/include/glib-2.0/gio/giotypes.h:28, from /usr/local/include/glib-2.0/gio/gio.h:26, from /usr/local/include/gtk-2.0/gdk/gdkapplaunchcontext.h:30, from /usr/local/include/gtk-2.0/gdk/gdk.h:32, from /usr/local/include/gtk-2.0/gdk/gdkprivate.h:30, from /usr/local/include/gtk-2.0/gdk/gdkx.h:30, from main.c:18: /usr/local/include/glib-2.0/glib/gtypes.h:547:8: note: declared here struct _GTimeVal ^~~~~~~~~ main.c: In function 'key_press_event': main.c:982:2: warning: this 'else' clause does not guard... [-Wmisleading-indentation] else ^~~~ main.c:984:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' gtk_signal_emit_stop_by_name (GTK_OBJECT(mainw), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ main.c:992:2: warning: this 'else' clause does not guard... [-Wmisleading-indentation] else ^~~~ main.c:994:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' gtk_signal_emit_stop_by_name (GTK_OBJECT(mainw), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ main.c:1002:2: warning: this 'else' clause does not guard... [-Wmisleading-indentation] else ^~~~ main.c:1004:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' gtk_signal_emit_stop_by_name (GTK_OBJECT(mainw), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ main.c: In function 'Zoom': main.c:1233:22: warning: comparison with string literal results in unspecified behavior [-Waddress] if ((char *) inout != "0") ^~ main.c: In function 'do_query': main.c:1753:13: warning: Deprecated pre-processor symbol, replace with while (g_main_iteration (FALSE)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ main.c: In function 'Load': main.c:2846:7: warning: the address of 'datamask' will always evaluate as 'true' [-Waddress] if (datamask && (int)strlen (datamask)) ^~~~~~~~ main.c: In function 'Add': main.c:3020:7: warning: the address of 'datamask' will always evaluate as 'true' [-Waddress] if (datamask && (int)strlen (datamask)) ^~~~~~~~ main.c: In function 'main': main.c:6641:7: warning: the address of 'datadir' will always evaluate as 'true' [-Waddress] if (datadir && (int)strlen (datadir) > 1) ^~~~~~~ main.c: In function 'reallysave': main.c:3779:44: warning: '%s' directive output may be truncated writing up to 511 bytes into a region of size 238 [-Wformat-truncation=] snprintf (errtext,255, "Chemtool 1.7a15 (%s)", filename); ^~ ~~~~~~~~ main.c:3779:3: note: 'snprintf' output between 19 and 530 bytes into a destination of size 255 snprintf (errtext,255, "Chemtool 1.7a15 (%s)", filename); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ main.c: In function 'file_ok_sel': main.c:3710:45: warning: '%s' directive output may be truncated writing up to 511 bytes into a region of size 238 [-Wformat-truncation=] snprintf (errtext,255, "Chemtool 1.7a15 (%s)", filename); ^~ ~~~~~~~~ main.c:3710:4: note: 'snprintf' output between 19 and 530 bytes into a destination of size 255 snprintf (errtext,255, "Chemtool 1.7a15 (%s)", filename); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ main.c:3675:46: warning: '%s' directive output may be truncated writing up to 511 bytes into a region of size 238 [-Wformat-truncation=] snprintf (errtext, 255, "Chemtool 1.7a15 (%s)", filename); ^~ ~~~~~~~~ main.c:3675:4: note: 'snprintf' output between 19 and 530 bytes into a destination of size 255 snprintf (errtext, 255, "Chemtool 1.7a15 (%s)", filename); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ main.c:3632:45: warning: '%s' directive output may be truncated writing up to 511 bytes into a region of size 238 [-Wformat-truncation=] snprintf (errtext,255, "Chemtool 1.7a15 (%s)", filename); ^~ ~~~~~~~~ main.c:3632:4: note: 'snprintf' output between 19 and 530 bytes into a destination of size 255 snprintf (errtext,255, "Chemtool 1.7a15 (%s)", filename); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ main.c:3548:45: warning: '%s' directive output may be truncated writing up to 511 bytes into a region of size 238 [-Wformat-truncation=] snprintf (errtext,255, "Chemtool 1.7a15 (%s)", filename); ^~ ~~~~~~~~ main.c:3548:4: note: 'snprintf' output between 19 and 530 bytes into a destination of size 255 snprintf (errtext,255, "Chemtool 1.7a15 (%s)", filename); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ main.c:3519:45: warning: '%s' directive output may be truncated writing up to 511 bytes into a region of size 238 [-Wformat-truncation=] snprintf (errtext,255, "Chemtool 1.7a15 (%s)", filename); ^~ ~~~~~~~~ main.c:3519:4: note: 'snprintf' output between 19 and 530 bytes into a destination of size 255 snprintf (errtext,255, "Chemtool 1.7a15 (%s)", filename); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ main.c:3508:7: warning: 'strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] strncpy (datadir, filename, strlen (filename) - strlen (tempstr) + 1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ main.c:3508:35: note: length computed here strncpy (datadir, filename, strlen (filename) - strlen (tempstr) + 1); ^~~~~~~~~~~~~~~~~ main.c: In function 'do_query': main.c:1758:3: warning: '__builtin_memcpy' forming offset [52, 53] is out of the bounds [0, 51] of object 'formula' with type 'char[51]' [-Warray-bounds] strcpy (formula, "program checkmol not available or unable to write to"); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from main.c:31: ct.h:257:6: note: 'formula' declared here char formula[51],weight[21],eweight[21],compos[65]; ^~~~~~~ main.c: In function 'main': main.c:5911:33: warning: '%d' directive output may be truncated writing between 1 and 10 bytes into a region of size 3 [-Wformat-truncation=] snprintf (bondnums[i],3, "%d", ii); ^~ main.c:5911:32: note: directive argument in the range [0, 2147483647] snprintf (bondnums[i],3, "%d", ii); ^~~~ main.c:5911:7: note: 'snprintf' output between 2 and 11 bytes into a destination of size 3 snprintf (bondnums[i],3, "%d", ii); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -O2 -Wall -Wunused -Wuninitialized -pipe -O2 -fno-strict-aliasing -I/usr/local/include -I/usr/local/include/libEMF -I. -DGTK2 -I/usr/local/include/gtk-2.0 -I/usr/local/include/pango-1.0 -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/usr/local/include/fribidi -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -I/usr/local/include/freetype2 -I/usr/local/include/libpng16 -I/usr/local/include/harfbuzz -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/atk-1.0 -D_THREAD_SAFE -pthread -DHAVE_CONFIG_H -DLOCALEDIR=\"/usr/local/share/locale\" -c -o chemproc.o chemproc.c In file included from /usr/local/include/gtk-2.0/gtk/gtkobject.h:37, from /usr/local/include/gtk-2.0/gtk/gtkwidget.h:36, from /usr/local/include/gtk-2.0/gtk/gtkcontainer.h:35, from /usr/local/include/gtk-2.0/gtk/gtkbin.h:35, from /usr/local/include/gtk-2.0/gtk/gtkwindow.h:36, from /usr/local/include/gtk-2.0/gtk/gtkdialog.h:35, from /usr/local/include/gtk-2.0/gtk/gtkaboutdialog.h:32, from /usr/local/include/gtk-2.0/gtk/gtk.h:33, from ct1.h:9, from chemproc.c:7: /usr/local/include/gtk-2.0/gtk/gtktypeutils.h:236:1: warning: 'GTypeDebugFlags' is deprecated [-Wdeprecated-declarations] void gtk_type_init (GTypeDebugFlags debug_flags); ^~~~ In file included from /usr/local/include/glib-2.0/gobject/gobject.h:24, from /usr/local/include/glib-2.0/gobject/gbinding.h:29, from /usr/local/include/glib-2.0/glib-object.h:22, from /usr/local/include/glib-2.0/gio/gioenums.h:28, from /usr/local/include/glib-2.0/gio/giotypes.h:28, from /usr/local/include/glib-2.0/gio/gio.h:26, from /usr/local/include/gtk-2.0/gdk/gdkapplaunchcontext.h:30, from /usr/local/include/gtk-2.0/gdk/gdk.h:32, from /usr/local/include/gtk-2.0/gtk/gtk.h:32, from ct1.h:9, from chemproc.c:7: /usr/local/include/glib-2.0/gobject/gtype.h:679:1: note: declared here { ^ In file included from /usr/local/include/gtk-2.0/gtk/gtktoolitem.h:31, from /usr/local/include/gtk-2.0/gtk/gtktoolbutton.h:30, from /usr/local/include/gtk-2.0/gtk/gtkmenutoolbutton.h:30, from /usr/local/include/gtk-2.0/gtk/gtk.h:126, from ct1.h:9, from chemproc.c:7: /usr/local/include/gtk-2.0/gtk/gtktooltips.h:73:3: warning: 'GTimeVal' is deprecated: Use 'GDateTime' instead [-Wdeprecated-declarations] GTimeVal last_popdown; ^~~~~~~~ In file included from /usr/local/include/glib-2.0/glib/galloca.h:32, from /usr/local/include/glib-2.0/glib.h:30, from /usr/local/include/glib-2.0/gobject/gbinding.h:28, from /usr/local/include/glib-2.0/glib-object.h:22, from /usr/local/include/glib-2.0/gio/gioenums.h:28, from /usr/local/include/glib-2.0/gio/giotypes.h:28, from /usr/local/include/glib-2.0/gio/gio.h:26, from /usr/local/include/gtk-2.0/gdk/gdkapplaunchcontext.h:30, from /usr/local/include/gtk-2.0/gdk/gdk.h:32, from /usr/local/include/gtk-2.0/gtk/gtk.h:32, from ct1.h:9, from chemproc.c:7: /usr/local/include/glib-2.0/glib/gtypes.h:547:8: note: declared here struct _GTimeVal ^~~~~~~~~ chemproc.c: In function 'tidy_mol': chemproc.c:1754:7: warning: variable 'r' set but not used [-Wunused-but-set-variable] int r = 0; ^ cc -O2 -Wall -Wunused -Wuninitialized -pipe -O2 -fno-strict-aliasing -I/usr/local/include -I/usr/local/include/libEMF -I. -DGTK2 -I/usr/local/include/gtk-2.0 -I/usr/local/include/pango-1.0 -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/usr/local/include/fribidi -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -I/usr/local/include/freetype2 -I/usr/local/include/libpng16 -I/usr/local/include/harfbuzz -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/atk-1.0 -D_THREAD_SAFE -pthread -DHAVE_CONFIG_H -DLOCALEDIR=\"/usr/local/share/locale\" -c -o graph.o graph.c In file included from /usr/local/include/gtk-2.0/gtk/gtkobject.h:37, from /usr/local/include/gtk-2.0/gtk/gtkwidget.h:36, from /usr/local/include/gtk-2.0/gtk/gtkcontainer.h:35, from /usr/local/include/gtk-2.0/gtk/gtkbin.h:35, from /usr/local/include/gtk-2.0/gtk/gtkwindow.h:36, from /usr/local/include/gtk-2.0/gtk/gtkdialog.h:35, from /usr/local/include/gtk-2.0/gtk/gtkaboutdialog.h:32, from /usr/local/include/gtk-2.0/gtk/gtk.h:33, from ct1.h:9, from graph.c:7: /usr/local/include/gtk-2.0/gtk/gtktypeutils.h:236:1: warning: 'GTypeDebugFlags' is deprecated [-Wdeprecated-declarations] void gtk_type_init (GTypeDebugFlags debug_flags); ^~~~ In file included from /usr/local/include/glib-2.0/gobject/gobject.h:24, from /usr/local/include/glib-2.0/gobject/gbinding.h:29, from /usr/local/include/glib-2.0/glib-object.h:22, from /usr/local/include/glib-2.0/gio/gioenums.h:28, from /usr/local/include/glib-2.0/gio/giotypes.h:28, from /usr/local/include/glib-2.0/gio/gio.h:26, from /usr/local/include/gtk-2.0/gdk/gdkapplaunchcontext.h:30, from /usr/local/include/gtk-2.0/gdk/gdk.h:32, from /usr/local/include/gtk-2.0/gtk/gtk.h:32, from ct1.h:9, from graph.c:7: /usr/local/include/glib-2.0/gobject/gtype.h:679:1: note: declared here { ^ In file included from /usr/local/include/gtk-2.0/gtk/gtktoolitem.h:31, from /usr/local/include/gtk-2.0/gtk/gtktoolbutton.h:30, from /usr/local/include/gtk-2.0/gtk/gtkmenutoolbutton.h:30, from /usr/local/include/gtk-2.0/gtk/gtk.h:126, from ct1.h:9, from graph.c:7: /usr/local/include/gtk-2.0/gtk/gtktooltips.h:73:3: warning: 'GTimeVal' is deprecated: Use 'GDateTime' instead [-Wdeprecated-declarations] GTimeVal last_popdown; ^~~~~~~~ In file included from /usr/local/include/glib-2.0/glib/galloca.h:32, from /usr/local/include/glib-2.0/glib.h:30, from /usr/local/include/glib-2.0/gobject/gbinding.h:28, from /usr/local/include/glib-2.0/glib-object.h:22, from /usr/local/include/glib-2.0/gio/gioenums.h:28, from /usr/local/include/glib-2.0/gio/giotypes.h:28, from /usr/local/include/glib-2.0/gio/gio.h:26, from /usr/local/include/gtk-2.0/gdk/gdkapplaunchcontext.h:30, from /usr/local/include/gtk-2.0/gdk/gdk.h:32, from /usr/local/include/gtk-2.0/gtk/gtk.h:32, from ct1.h:9, from graph.c:7: /usr/local/include/glib-2.0/glib/gtypes.h:547:8: note: declared here struct _GTimeVal ^~~~~~~~~ graph.c: In function 'CopyPlane': graph.c:92:16: warning: variable 'update_rect' set but not used [-Wunused-but-set-variable] GdkRectangle update_rect; ^~~~~~~~~~~ graph.c: In function 'Drawstring': graph.c:1530:19: warning: argument to 'sizeof' in 'memset' call is the same expression as the destination; did you mean to provide an explicit length? [-Wsizeof-pointer-memaccess] memset(l,0,sizeof(l)); ^ cc -O2 -Wall -Wunused -Wuninitialized -pipe -O2 -fno-strict-aliasing -I/usr/local/include -I/usr/local/include/libEMF -I. -DGTK2 -I/usr/local/include/gtk-2.0 -I/usr/local/include/pango-1.0 -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/usr/local/include/fribidi -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -I/usr/local/include/freetype2 -I/usr/local/include/libpng16 -I/usr/local/include/harfbuzz -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/atk-1.0 -D_THREAD_SAFE -pthread -DHAVE_CONFIG_H -DLOCALEDIR=\"/usr/local/share/locale\" -c -o draw.o draw.c In file included from /usr/local/include/gtk-2.0/gtk/gtkobject.h:37, from /usr/local/include/gtk-2.0/gtk/gtkwidget.h:36, from /usr/local/include/gtk-2.0/gtk/gtkcontainer.h:35, from /usr/local/include/gtk-2.0/gtk/gtkbin.h:35, from /usr/local/include/gtk-2.0/gtk/gtkwindow.h:36, from /usr/local/include/gtk-2.0/gtk/gtkdialog.h:35, from /usr/local/include/gtk-2.0/gtk/gtkaboutdialog.h:32, from /usr/local/include/gtk-2.0/gtk/gtk.h:33, from ct1.h:9, from draw.c:7: /usr/local/include/gtk-2.0/gtk/gtktypeutils.h:236:1: warning: 'GTypeDebugFlags' is deprecated [-Wdeprecated-declarations] void gtk_type_init (GTypeDebugFlags debug_flags); ^~~~ In file included from /usr/local/include/glib-2.0/gobject/gobject.h:24, from /usr/local/include/glib-2.0/gobject/gbinding.h:29, from /usr/local/include/glib-2.0/glib-object.h:22, from /usr/local/include/glib-2.0/gio/gioenums.h:28, from /usr/local/include/glib-2.0/gio/giotypes.h:28, from /usr/local/include/glib-2.0/gio/gio.h:26, from /usr/local/include/gtk-2.0/gdk/gdkapplaunchcontext.h:30, from /usr/local/include/gtk-2.0/gdk/gdk.h:32, from /usr/local/include/gtk-2.0/gtk/gtk.h:32, from ct1.h:9, from draw.c:7: /usr/local/include/glib-2.0/gobject/gtype.h:679:1: note: declared here { ^ In file included from /usr/local/include/gtk-2.0/gtk/gtktoolitem.h:31, from /usr/local/include/gtk-2.0/gtk/gtktoolbutton.h:30, from /usr/local/include/gtk-2.0/gtk/gtkmenutoolbutton.h:30, from /usr/local/include/gtk-2.0/gtk/gtk.h:126, from ct1.h:9, from draw.c:7: /usr/local/include/gtk-2.0/gtk/gtktooltips.h:73:3: warning: 'GTimeVal' is deprecated: Use 'GDateTime' instead [-Wdeprecated-declarations] GTimeVal last_popdown; ^~~~~~~~ In file included from /usr/local/include/glib-2.0/glib/galloca.h:32, from /usr/local/include/glib-2.0/glib.h:30, from /usr/local/include/glib-2.0/gobject/gbinding.h:28, from /usr/local/include/glib-2.0/glib-object.h:22, from /usr/local/include/glib-2.0/gio/gioenums.h:28, from /usr/local/include/glib-2.0/gio/giotypes.h:28, from /usr/local/include/glib-2.0/gio/gio.h:26, from /usr/local/include/gtk-2.0/gdk/gdkapplaunchcontext.h:30, from /usr/local/include/gtk-2.0/gdk/gdk.h:32, from /usr/local/include/gtk-2.0/gtk/gtk.h:32, from ct1.h:9, from draw.c:7: /usr/local/include/glib-2.0/glib/gtypes.h:547:8: note: declared here struct _GTimeVal ^~~~~~~~~ draw.c: In function 'Add_ring': draw.c:134:10: warning: variable 'a' set but not used [-Wunused-but-set-variable] double a; /* temp angle used for aromates */ ^ draw.c: In function 'Add_double': draw.c:385:11: warning: variable 'dy' set but not used [-Wunused-but-set-variable] int dx, dy; ^~ draw.c:385:7: warning: variable 'dx' set but not used [-Wunused-but-set-variable] int dx, dy; ^~ draw.c: In function 'Add_number': draw.c:1092:17: warning: variable 'coord' set but not used [-Wunused-but-set-variable] struct xy_co *coord; ^~~~~ draw.c:1096:20: warning: '%d' directive output may be truncated writing between 1 and 11 bytes into a region of size 9 [-Wformat-truncation=] snprintf(name,9,"%d",++atnum); ^~ draw.c:1096:19: note: directive argument in the range [-2147483647, 2147483647] snprintf(name,9,"%d",++atnum); ^~~~ draw.c:1096:3: note: 'snprintf' output between 2 and 12 bytes into a destination of size 9 snprintf(name,9,"%d",++atnum); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -O2 -Wall -Wunused -Wuninitialized -pipe -O2 -fno-strict-aliasing -I/usr/local/include -I/usr/local/include/libEMF -I. -DGTK2 -I/usr/local/include/gtk-2.0 -I/usr/local/include/pango-1.0 -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/usr/local/include/fribidi -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -I/usr/local/include/freetype2 -I/usr/local/include/libpng16 -I/usr/local/include/harfbuzz -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/atk-1.0 -D_THREAD_SAFE -pthread -DHAVE_CONFIG_H -DLOCALEDIR=\"/usr/local/share/locale\" -c -o inout.o inout.c In file included from /usr/local/include/gtk-2.0/gtk/gtkobject.h:37, from /usr/local/include/gtk-2.0/gtk/gtkwidget.h:36, from /usr/local/include/gtk-2.0/gtk/gtkcontainer.h:35, from /usr/local/include/gtk-2.0/gtk/gtkbin.h:35, from /usr/local/include/gtk-2.0/gtk/gtkwindow.h:36, from /usr/local/include/gtk-2.0/gtk/gtkdialog.h:35, from /usr/local/include/gtk-2.0/gtk/gtkaboutdialog.h:32, from /usr/local/include/gtk-2.0/gtk/gtk.h:33, from ct1.h:9, from inout.c:6: /usr/local/include/gtk-2.0/gtk/gtktypeutils.h:236:1: warning: 'GTypeDebugFlags' is deprecated [-Wdeprecated-declarations] void gtk_type_init (GTypeDebugFlags debug_flags); ^~~~ In file included from /usr/local/include/glib-2.0/gobject/gobject.h:24, from /usr/local/include/glib-2.0/gobject/gbinding.h:29, from /usr/local/include/glib-2.0/glib-object.h:22, from /usr/local/include/glib-2.0/gio/gioenums.h:28, from /usr/local/include/glib-2.0/gio/giotypes.h:28, from /usr/local/include/glib-2.0/gio/gio.h:26, from /usr/local/include/gtk-2.0/gdk/gdkapplaunchcontext.h:30, from /usr/local/include/gtk-2.0/gdk/gdk.h:32, from /usr/local/include/gtk-2.0/gtk/gtk.h:32, from ct1.h:9, from inout.c:6: /usr/local/include/glib-2.0/gobject/gtype.h:679:1: note: declared here { ^ In file included from /usr/local/include/gtk-2.0/gtk/gtktoolitem.h:31, from /usr/local/include/gtk-2.0/gtk/gtktoolbutton.h:30, from /usr/local/include/gtk-2.0/gtk/gtkmenutoolbutton.h:30, from /usr/local/include/gtk-2.0/gtk/gtk.h:126, from ct1.h:9, from inout.c:6: /usr/local/include/gtk-2.0/gtk/gtktooltips.h:73:3: warning: 'GTimeVal' is deprecated: Use 'GDateTime' instead [-Wdeprecated-declarations] GTimeVal last_popdown; ^~~~~~~~ In file included from /usr/local/include/glib-2.0/glib/galloca.h:32, from /usr/local/include/glib-2.0/glib.h:30, from /usr/local/include/glib-2.0/gobject/gbinding.h:28, from /usr/local/include/glib-2.0/glib-object.h:22, from /usr/local/include/glib-2.0/gio/gioenums.h:28, from /usr/local/include/glib-2.0/gio/giotypes.h:28, from /usr/local/include/glib-2.0/gio/gio.h:26, from /usr/local/include/gtk-2.0/gdk/gdkapplaunchcontext.h:30, from /usr/local/include/gtk-2.0/gdk/gdk.h:32, from /usr/local/include/gtk-2.0/gtk/gtk.h:32, from ct1.h:9, from inout.c:6: /usr/local/include/glib-2.0/glib/gtypes.h:547:8: note: declared here struct _GTimeVal ^~~~~~~~~ inout.c: In function 'import_mdl_mol': inout.c:981:22: warning: passing argument 1 to restrict-qualified parameter aliases with argument 3 [-Wrestrict] sprintf(atcode[pdbn],"%sH_%d",atcode[pdbn],hhh-1); ~~~~~~^~~~~~ ~~~~~~~~~~~~ inout.c:982:27: warning: passing argument 1 to restrict-qualified parameter aliases with argument 3 [-Wrestrict] if (hhh==2)sprintf(atcode[pdbn],"%sH",atcode[pdbn]); ~~~~~~^~~~~~ ~~~~~~~~~~~~ inout.c: In function 'export_emf': inout.c:2787:35: warning: variable 'rval' set but not used [-Wunused-but-set-variable] int ha,fzoom,xpos,chl,nsub,nsup,rval,l; ^~~~ inout.c: In function 'check_babel': inout.c:5589:15: warning: variable 'stop' set but not used [-Wunused-but-set-variable] int start=0,stop=0; ^~~~ inout.c: In function 'export_fw': inout.c:5182:31: warning: '%s' directive output may be truncated writing up to 511 bytes into a region of size 251 [-Wformat-truncation=] snprintf (com,255, "cht %s", xfile); ^~ ~~~~~ inout.c:5182:7: note: 'snprintf' output between 5 and 516 bytes into a destination of size 255 snprintf (com,255, "cht %s", xfile); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ inout.c: In function 'export_checkmol': inout.c:5325:39: warning: '%s' directive output may be truncated writing up to 511 bytes into a region of size 243 [-Wformat-truncation=] snprintf (com,255, "matchmol -s %s %s", xfile,candidate); ^~ ~~~~~ inout.c:5325:7: note: 'snprintf' output between 14 and 644 bytes into a destination of size 255 snprintf (com,255, "matchmol -s %s %s", xfile,candidate); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -O2 -Wall -Wunused -Wuninitialized -pipe -O2 -fno-strict-aliasing -I/usr/local/include -I/usr/local/include/libEMF -I. -DGTK2 -I/usr/local/include/gtk-2.0 -I/usr/local/include/pango-1.0 -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/usr/local/include/fribidi -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -I/usr/local/include/freetype2 -I/usr/local/include/libpng16 -I/usr/local/include/harfbuzz -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/atk-1.0 -D_THREAD_SAFE -pthread -DHAVE_CONFIG_H -DLOCALEDIR=\"/usr/local/share/locale\" -c -o undo.o undo.c cc main.o chemproc.o graph.o draw.o inout.o undo.o -L/usr/local/lib -lgtk-x11-2.0 -lgdk-x11-2.0 -lpangocairo-1.0 -latk-1.0 -lcairo -lpthread -lgdk_pixbuf-2.0 -lgio-2.0 -lpangoft2-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype -L%%LOCALBASE%%/lib -lEMF -lm -L/usr/local/lib -lX11 -o chemtool cd src-cht;gmake gmake[2]: Entering directory '/construction/science/chemtool-devel/chemtool-1.7alpha15/src-cht' cc -pipe -O2 -fno-strict-aliasing cht-2.5.c -o cht cht-2.5.c:2921:1: warning: return type defaults to 'int' [-Wimplicit-int] main(argc, argv) ^~~~ gmake[2]: Leaving directory '/construction/science/chemtool-devel/chemtool-1.7alpha15/src-cht' gmake[1]: Leaving directory '/construction/science/chemtool-devel/chemtool-1.7alpha15' SUCCEEDED 00:00:21 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> chemtool-devel-1.7.20050716_10 depends on executable: fig2dev - found ===> chemtool-devel-1.7.20050716_10 depends on file: /usr/local/libdata/pkgconfig/x11.pc - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for chemtool-devel-1.7.20050716_10 ===> chemtool-devel-1.7.20050716_10 depends on executable: fig2dev - found ===> chemtool-devel-1.7.20050716_10 depends on file: /usr/local/libdata/pkgconfig/x11.pc - found ===> Generating temporary packing list gmake[1]: Entering directory '/construction/science/chemtool-devel/chemtool-1.7alpha15' /usr/bin/install -c -d /construction/science/chemtool-devel/stage/usr/local/bin /construction/science/chemtool-devel/stage/usr/local/man/man1 /usr/bin/install -c chemtool src-cht/cht /construction/science/chemtool-devel/stage/usr/local/bin /usr/bin/install -c chemtool.1 /construction/science/chemtool-devel/stage/usr/local/man/man1 /usr/bin/install -c cht.1 /construction/science/chemtool-devel/stage/usr/local/man/man1 for L in `ls locales`; do /usr/bin/install -c -d /construction/science/chemtool-devel/stage/usr/local/share/locale/$L/LC_MESSAGES; /usr/bin/install -c -m664 locales/$L/chemtool.mo /construction/science/chemtool-devel/stage/usr/local/share/locale/$L/LC_MESSAGES;done gmake[1]: Leaving directory '/construction/science/chemtool-devel/chemtool-1.7alpha15' /bin/mkdir -p /construction/science/chemtool-devel/stage/usr/local/share/examples/chemtool install -m 0644 /construction/science/chemtool-devel/chemtool-1.7alpha15//examples/* /construction/science/chemtool-devel/stage/usr/local/share/examples/chemtool ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: 'bin/cht' is not stripped consider trying INSTALL_TARGET=install-strip or using ${STRIP_CMD} Error: /usr/local/bin/chemtool is linked to /usr/local/lib/libcairo.so.2 from graphics/cairo but it is not declared as a dependency Warning: you need USE_GNOME+=cairo Error: /usr/local/bin/chemtool is linked to /usr/local/lib/libgdk_pixbuf-2.0.so.0 from graphics/gdk-pixbuf2 but it is not declared as a dependency Warning: you need USE_GNOME+=gdkpixbuf2 Error: /usr/local/bin/chemtool is linked to /usr/local/lib/libfontconfig.so.1 from x11-fonts/fontconfig but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libfontconfig.so:x11-fonts/fontconfig Error: /usr/local/bin/chemtool is linked to /usr/local/lib/libfreetype.so.6 from print/freetype2 but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libfreetype.so:print/freetype2 Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:02 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- ====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for chemtool-devel-1.7.20050716_10 file sizes/checksums [50]: 0% file sizes/checksums [50]: 100% packing files [50]: 0% packing files [50]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:02 TOTAL TIME 00:01:37