------------------------------------------------------------------------------- -- Phase: Environment ------------------------------------------------------------------------------- NO_DEPENDS=1 FLAVOR=py37 UNAME_r=5.9 UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=unknown UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 LANG=C HOME=/root USER=root TERM=dumb SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: showconfig ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ENV ------------------------------------------------------------------------------- PYTHON="/usr/local/bin/python3.7" XDG_DATA_HOME=/construction/math/py-scikit-umfpack XDG_CONFIG_HOME=/construction/math/py-scikit-umfpack HOME=/construction/math/py-scikit-umfpack TMPDIR="/tmp" PATH=/construction/math/py-scikit-umfpack/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ARGS ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ENV ------------------------------------------------------------------------------- XDG_DATA_HOME=/construction/math/py-scikit-umfpack XDG_CONFIG_HOME=/construction/math/py-scikit-umfpack HOME=/construction/math/py-scikit-umfpack TMPDIR="/tmp" PATH=/construction/math/py-scikit-umfpack/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ARGS ------------------------------------------------------------------------------- DESTDIR=/construction/math/py-scikit-umfpack/stage SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: PLIST_SUB ------------------------------------------------------------------------------- PYTHON_INCLUDEDIR=include/python3.7m PYTHON_LIBDIR=lib/python3.7 PYTHON_PLATFORM=dragonfly5 PYTHON_SITELIBDIR=lib/python3.7/site-packages PYTHON_SUFFIX=37 PYTHON_EXT_SUFFIX= PYTHON_VER=3.7 PYTHON_VERSION=python3.7 PYTHON2="@comment " PYTHON3="" OSREL=5.9 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/scikit-umfpack" EXAMPLESDIR="share/examples/scikit-umfpack" DATADIR="share/scikit-umfpack" WWWDIR="www/scikit-umfpack" ETCDIR="etc/scikit-umfpack" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: SUB_LIST ------------------------------------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/scikit-umfpack DOCSDIR=/usr/local/share/doc/scikit-umfpack EXAMPLESDIR=/usr/local/share/examples/scikit-umfpack WWWDIR=/usr/local/www/scikit-umfpack ETCDIR=/usr/local/etc/scikit-umfpack SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: /etc/make.conf ------------------------------------------------------------------------------- DPORTS_BUILDER=yes DISABLE_LICENSES=yes DEFAULT_VERSIONS=ssl=openssl FORCE_PACKAGE=yes DEVELOPER=yes USE_PACKAGE_DEPENDS_ONLY=yes PORTSDIR=/xports PORT_DBDIR=/options PKG_DBDIR=/var/db/pkg PKG_CACHEDIR=/var/cache/pkg PKG_SUFX=.txz DEVELOPER=1 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500906 OSVERSION=9999999 OSREL=5.9 _OSRELEASE=5.9-SYNTH DISTDIR=/distfiles WRKDIRPREFIX=/construction BATCH=yes PACKAGE_BUILDING=yes PKG_CREATE_VERBOSE=yes MAKE_JOBS_NUMBER=10 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/gmp-6.2.1.txz Installing /packages/All/mpfr-4.1.0.txz Installing /packages/All/metis-5.1.0_8.txz ===== Message from metis-5.1.0_8: -- ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Installing /packages/All/tbb-2020.3_1.txz Installing /packages/All/mpc-1.1.0_2.txz UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/gettext-runtime-0.21.txz Installing /packages/All/binutils-2.33.1_4,1.txz Installing /packages/All/gcc8-8.4.0.txz ===== Message from gcc8-8.4.0: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/openblas-0.3.12,1.txz Installing /packages/All/suitesparse-5.8.1.txz Installing /packages/All/libffi-3.3_1.txz Installing /packages/All/expat-2.2.10.txz Installing /packages/All/ncurses-6.2.20210116.txz Installing /packages/All/readline-8.0.4_1.txz Installing /packages/All/openssl-1.1.1i,1.txz Installing /packages/All/python37-3.7.9_1.txz ===== Message from python37-3.7.9_1: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py37-gdbm databases/py-gdbm@py37 py37-sqlite3 databases/py-sqlite3@py37 py37-tkinter x11-toolkits/py-tkinter@py37 Installing /packages/All/py37-setuptools-44.0.0.txz Installing /packages/All/py37-numpy-1.16.6,1.txz Installing /packages/All/blas-3.5.0_6.txz Installing /packages/All/py37-scipy-1.5.4_1.txz Installing /packages/All/pcre-8.44.txz Installing /packages/All/swig-4.0.2.txz Installing /packages/All/py37-cython-0.29.21.txz UNFLAVORED devel/binutils -> use devel/binutils@native SUCCEEDED 00:01:08 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> py37-scikit-umfpack-0.3.2_3 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> py37-scikit-umfpack-0.3.2_3 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py37-scikit-umfpack-0.3.2_3 for building SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> py37-scikit-umfpack-0.3.2_3 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py37-scikit-umfpack-0.3.2_3 for building => SHA256 Checksum OK for scikit-umfpack-0.3.2.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> py37-scikit-umfpack-0.3.2_3 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py37-scikit-umfpack-0.3.2_3 for building ===> Extracting for py37-scikit-umfpack-0.3.2_3 => SHA256 Checksum OK for scikit-umfpack-0.3.2.tar.gz. Extracted Memory Use: 0.14M SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for py37-scikit-umfpack-0.3.2_3 SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> py37-scikit-umfpack-0.3.2_3 depends on package: py37-numpy>=1.16,1<1.20,1 - found ===> py37-scikit-umfpack-0.3.2_3 depends on package: py37-scipy>0 - found ===> py37-scikit-umfpack-0.3.2_3 depends on executable: swig - found ===> py37-scikit-umfpack-0.3.2_3 depends on executable: cython-3.7 - found ===> py37-scikit-umfpack-0.3.2_3 depends on package: py37-setuptools>0 - found ===> py37-scikit-umfpack-0.3.2_3 depends on file: /usr/local/bin/python3.7 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- ===> py37-scikit-umfpack-0.3.2_3 depends on shared library: libumfpack.so - found (/usr/local/lib/libumfpack.so) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> py37-scikit-umfpack-0.3.2_3 depends on package: py37-numpy>=1.16,1<1.20,1 - found ===> py37-scikit-umfpack-0.3.2_3 depends on package: py37-scipy>0 - found ===> py37-scikit-umfpack-0.3.2_3 depends on executable: swig - found ===> py37-scikit-umfpack-0.3.2_3 depends on executable: cython-3.7 - found ===> py37-scikit-umfpack-0.3.2_3 depends on package: py37-setuptools>0 - found ===> py37-scikit-umfpack-0.3.2_3 depends on file: /usr/local/bin/python3.7 - found ===> py37-scikit-umfpack-0.3.2_3 depends on shared library: libumfpack.so - found (/usr/local/lib/libumfpack.so) ===> Configuring for py37-scikit-umfpack-0.3.2_3 setup.py:56: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses import imp umfpack_info: customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmputgyxa_v/tmp creating /tmp/tmputgyxa_v/tmp/tmputgyxa_v compile options: '-MMD -MF /tmp/tmputgyxa_v/file.c.d -c' cc: /tmp/tmputgyxa_v/file.c amd_info: customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpr2e_jk86/tmp creating /tmp/tmpr2e_jk86/tmp/tmpr2e_jk86 compile options: '-MMD -MF /tmp/tmpr2e_jk86/file.c.d -c' cc: /tmp/tmpr2e_jk86/file.c customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmp44l4la28/tmp creating /tmp/tmp44l4la28/tmp/tmp44l4la28 compile options: '-MMD -MF /tmp/tmp44l4la28/file.c.d -c' cc: /tmp/tmp44l4la28/file.c FOUND: libraries = ['amd', 'amd'] library_dirs = ['/usr/local/lib'] include_dirs = ['/usr/local/include/suitesparse'] define_macros = [('SCIPY_AMD_H', None)] swig_opts = ['-I/usr/local/include/suitesparse'] customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpu7wq56r2/tmp creating /tmp/tmpu7wq56r2/tmp/tmpu7wq56r2 compile options: '-MMD -MF /tmp/tmpu7wq56r2/file.c.d -c' cc: /tmp/tmpu7wq56r2/file.c FOUND: libraries = ['umfpack', 'amd', 'amd', 'umfpack'] library_dirs = ['/usr/local/lib'] include_dirs = ['/usr/local/include/suitesparse'] define_macros = [('SCIPY_UMFPACK_H', None), ('SCIPY_AMD_H', None)] swig_opts = ['-I/usr/local/include/suitesparse', '-I/usr/local/include/suitesparse'] blas_opt_info: blas_mkl_info: customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpvnbi1n1p/tmp creating /tmp/tmpvnbi1n1p/tmp/tmpvnbi1n1p compile options: '-MMD -MF /tmp/tmpvnbi1n1p/file.c.d -c' cc: /tmp/tmpvnbi1n1p/file.c libraries mkl_rt not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../../'] NOT AVAILABLE blis_info: customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpzzaook0k/tmp creating /tmp/tmpzzaook0k/tmp/tmpzzaook0k compile options: '-MMD -MF /tmp/tmpzzaook0k/file.c.d -c' cc: /tmp/tmpzzaook0k/file.c libraries blis not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../../'] NOT AVAILABLE atlas_3_10_blas_threads_info: Setting PTATLAS=ATLAS customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmplxm88jr_/tmp creating /tmp/tmplxm88jr_/tmp/tmplxm88jr_ compile options: '-MMD -MF /tmp/tmplxm88jr_/file.c.d -c' cc: /tmp/tmplxm88jr_/file.c libraries tatlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../../'] NOT AVAILABLE atlas_3_10_blas_info: customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmp9vsw_3z_/tmp creating /tmp/tmp9vsw_3z_/tmp/tmp9vsw_3z_ compile options: '-MMD -MF /tmp/tmp9vsw_3z_/file.c.d -c' cc: /tmp/tmp9vsw_3z_/file.c libraries satlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../../'] NOT AVAILABLE atlas_blas_threads_info: Setting PTATLAS=ATLAS customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpc0v55qcs/tmp creating /tmp/tmpc0v55qcs/tmp/tmpc0v55qcs compile options: '-MMD -MF /tmp/tmpc0v55qcs/file.c.d -c' cc: /tmp/tmpc0v55qcs/file.c libraries ptf77blas,ptcblas,atlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../../'] NOT AVAILABLE atlas_blas_info: customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmp3iiyndal/tmp creating /tmp/tmp3iiyndal/tmp/tmp3iiyndal compile options: '-MMD -MF /tmp/tmp3iiyndal/file.c.d -c' cc: /tmp/tmp3iiyndal/file.c libraries f77blas,cblas,atlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../../'] NOT AVAILABLE accelerate_info: NOT AVAILABLE /usr/local/lib/python3.7/site-packages/numpy/distutils/system_info.py:641: UserWarning: Atlas (http://math-atlas.sourceforge.net/) libraries not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [atlas]) or by setting the ATLAS environment variable. self.calc_info() blas_info: customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpil2c0k1n/tmp creating /tmp/tmpil2c0k1n/tmp/tmpil2c0k1n compile options: '-MMD -MF /tmp/tmpil2c0k1n/file.c.d -c' cc: /tmp/tmpil2c0k1n/file.c customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpsui_7nx6/tmp creating /tmp/tmpsui_7nx6/tmp/tmpsui_7nx6 compile options: '-MMD -MF /tmp/tmpsui_7nx6/file.c.d -c' cc: /tmp/tmpsui_7nx6/file.c C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpk0sw0bs5/tmp creating /tmp/tmpk0sw0bs5/tmp/tmpk0sw0bs5 compile options: '-I/usr/include -I/usr/local/include -I/usr/local/include/suitesparse -c' cc: /tmp/tmpk0sw0bs5/source.c cc /tmp/tmpk0sw0bs5/tmp/tmpk0sw0bs5/source.o -L/usr/local/lib -lcblas -o /tmp/tmpk0sw0bs5/a.out /usr/libexec/binutils234/elf/ld.gold: error: cannot find -lcblas /tmp/tmpk0sw0bs5/tmp/tmpk0sw0bs5/source.o:source.c:function main: error: undefined reference to 'cblas_ddot' collect2: error: ld returned 1 exit status cc /tmp/tmpk0sw0bs5/tmp/tmpk0sw0bs5/source.o -L/usr/local/lib -lblas -o /tmp/tmpk0sw0bs5/a.out /tmp/tmpk0sw0bs5/tmp/tmpk0sw0bs5/source.o:source.c:function main: error: undefined reference to 'cblas_ddot' collect2: error: ld returned 1 exit status cc /tmp/tmpk0sw0bs5/tmp/tmpk0sw0bs5/source.o -L/usr/local/lib -lopenblas -o /tmp/tmpk0sw0bs5/a.out customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpi5xbv0n8/tmp creating /tmp/tmpi5xbv0n8/tmp/tmpi5xbv0n8 compile options: '-MMD -MF /tmp/tmpi5xbv0n8/file.c.d -c' cc: /tmp/tmpi5xbv0n8/file.c FOUND: libraries = ['openblas', 'blas'] library_dirs = ['/usr/local/lib'] include_dirs = ['/usr/include', '/usr/local/include', '/usr/local/include/suitesparse'] language = c define_macros = [('HAVE_CBLAS', None)] FOUND: define_macros = [('NO_ATLAS_INFO', 1), ('HAVE_CBLAS', None)] libraries = ['openblas', 'blas'] library_dirs = ['/usr/local/lib'] include_dirs = ['/usr/include', '/usr/local/include', '/usr/local/include/suitesparse'] language = c running config SUCCEEDED 00:00:39 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for py37-scikit-umfpack-0.3.2_3 setup.py:56: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses import imp umfpack_info: customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmplixufkw5/tmp creating /tmp/tmplixufkw5/tmp/tmplixufkw5 compile options: '-MMD -MF /tmp/tmplixufkw5/file.c.d -c' cc: /tmp/tmplixufkw5/file.c amd_info: customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpt211x4lt/tmp creating /tmp/tmpt211x4lt/tmp/tmpt211x4lt compile options: '-MMD -MF /tmp/tmpt211x4lt/file.c.d -c' cc: /tmp/tmpt211x4lt/file.c customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpjmg2itoh/tmp creating /tmp/tmpjmg2itoh/tmp/tmpjmg2itoh compile options: '-MMD -MF /tmp/tmpjmg2itoh/file.c.d -c' cc: /tmp/tmpjmg2itoh/file.c FOUND: libraries = ['amd', 'amd'] library_dirs = ['/usr/local/lib'] include_dirs = ['/usr/local/include/suitesparse'] define_macros = [('SCIPY_AMD_H', None)] swig_opts = ['-I/usr/local/include/suitesparse'] customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpqse30tye/tmp creating /tmp/tmpqse30tye/tmp/tmpqse30tye compile options: '-MMD -MF /tmp/tmpqse30tye/file.c.d -c' cc: /tmp/tmpqse30tye/file.c FOUND: libraries = ['umfpack', 'amd', 'amd', 'umfpack'] library_dirs = ['/usr/local/lib'] include_dirs = ['/usr/local/include/suitesparse'] define_macros = [('SCIPY_UMFPACK_H', None), ('SCIPY_AMD_H', None)] swig_opts = ['-I/usr/local/include/suitesparse', '-I/usr/local/include/suitesparse'] blas_opt_info: blas_mkl_info: customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmp235nv0vf/tmp creating /tmp/tmp235nv0vf/tmp/tmp235nv0vf compile options: '-MMD -MF /tmp/tmp235nv0vf/file.c.d -c' cc: /tmp/tmp235nv0vf/file.c libraries mkl_rt not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../../'] NOT AVAILABLE blis_info: customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpqk85dd0i/tmp creating /tmp/tmpqk85dd0i/tmp/tmpqk85dd0i compile options: '-MMD -MF /tmp/tmpqk85dd0i/file.c.d -c' cc: /tmp/tmpqk85dd0i/file.c libraries blis not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../../'] NOT AVAILABLE atlas_3_10_blas_threads_info: Setting PTATLAS=ATLAS customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpr418q2va/tmp creating /tmp/tmpr418q2va/tmp/tmpr418q2va compile options: '-MMD -MF /tmp/tmpr418q2va/file.c.d -c' cc: /tmp/tmpr418q2va/file.c libraries tatlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../../'] NOT AVAILABLE atlas_3_10_blas_info: customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpywildkf6/tmp creating /tmp/tmpywildkf6/tmp/tmpywildkf6 compile options: '-MMD -MF /tmp/tmpywildkf6/file.c.d -c' cc: /tmp/tmpywildkf6/file.c libraries satlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../../'] NOT AVAILABLE atlas_blas_threads_info: Setting PTATLAS=ATLAS customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpbde1bncc/tmp creating /tmp/tmpbde1bncc/tmp/tmpbde1bncc compile options: '-MMD -MF /tmp/tmpbde1bncc/file.c.d -c' cc: /tmp/tmpbde1bncc/file.c libraries ptf77blas,ptcblas,atlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../../'] NOT AVAILABLE atlas_blas_info: customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmp37if8odz/tmp creating /tmp/tmp37if8odz/tmp/tmp37if8odz compile options: '-MMD -MF /tmp/tmp37if8odz/file.c.d -c' cc: /tmp/tmp37if8odz/file.c libraries f77blas,cblas,atlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../../'] NOT AVAILABLE accelerate_info: NOT AVAILABLE /usr/local/lib/python3.7/site-packages/numpy/distutils/system_info.py:641: UserWarning: Atlas (http://math-atlas.sourceforge.net/) libraries not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [atlas]) or by setting the ATLAS environment variable. self.calc_info() blas_info: customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmprgblzma0/tmp creating /tmp/tmprgblzma0/tmp/tmprgblzma0 compile options: '-MMD -MF /tmp/tmprgblzma0/file.c.d -c' cc: /tmp/tmprgblzma0/file.c customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmptuzdj8hq/tmp creating /tmp/tmptuzdj8hq/tmp/tmptuzdj8hq compile options: '-MMD -MF /tmp/tmptuzdj8hq/file.c.d -c' cc: /tmp/tmptuzdj8hq/file.c C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpkw5tauep/tmp creating /tmp/tmpkw5tauep/tmp/tmpkw5tauep compile options: '-I/usr/include -I/usr/local/include -I/usr/local/include/suitesparse -c' cc: /tmp/tmpkw5tauep/source.c cc /tmp/tmpkw5tauep/tmp/tmpkw5tauep/source.o -L/usr/local/lib -lcblas -o /tmp/tmpkw5tauep/a.out /usr/libexec/binutils234/elf/ld.gold: error: cannot find -lcblas /tmp/tmpkw5tauep/tmp/tmpkw5tauep/source.o:source.c:function main: error: undefined reference to 'cblas_ddot' collect2: error: ld returned 1 exit status cc /tmp/tmpkw5tauep/tmp/tmpkw5tauep/source.o -L/usr/local/lib -lblas -o /tmp/tmpkw5tauep/a.out /tmp/tmpkw5tauep/tmp/tmpkw5tauep/source.o:source.c:function main: error: undefined reference to 'cblas_ddot' collect2: error: ld returned 1 exit status cc /tmp/tmpkw5tauep/tmp/tmpkw5tauep/source.o -L/usr/local/lib -lopenblas -o /tmp/tmpkw5tauep/a.out customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpqcdl2v9f/tmp creating /tmp/tmpqcdl2v9f/tmp/tmpqcdl2v9f compile options: '-MMD -MF /tmp/tmpqcdl2v9f/file.c.d -c' cc: /tmp/tmpqcdl2v9f/file.c FOUND: libraries = ['openblas', 'blas'] library_dirs = ['/usr/local/lib'] include_dirs = ['/usr/include', '/usr/local/include', '/usr/local/include/suitesparse'] language = c define_macros = [('HAVE_CBLAS', None)] FOUND: define_macros = [('NO_ATLAS_INFO', 1), ('HAVE_CBLAS', None)] libraries = ['openblas', 'blas'] library_dirs = ['/usr/local/lib'] include_dirs = ['/usr/include', '/usr/local/include', '/usr/local/include/suitesparse'] language = c running build running config_cc unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src build_src building extension "scikits.umfpack.__umfpack" sources creating build creating build/src.dragonfly-5.9-x86_64-3.7 creating build/src.dragonfly-5.9-x86_64-3.7/scikits creating build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack adding 'scikits/umfpack/umfpack.i' to sources. swig: scikits/umfpack/umfpack.i swig -python -I/usr/local/include/suitesparse -I/usr/local/include/suitesparse -I/usr/local/include/suitesparse -I/usr/include -I/usr/local/include -o build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c -outdir build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack scikits/umfpack/umfpack.i building data_files sources build_src: building npy-pkg config files running build_py creating build/lib.dragonfly-5.9-x86_64-3.7 creating build/lib.dragonfly-5.9-x86_64-3.7/scikits creating build/lib.dragonfly-5.9-x86_64-3.7/scikits/umfpack copying scikits/umfpack/_umfpack.py -> build/lib.dragonfly-5.9-x86_64-3.7/scikits/umfpack copying scikits/umfpack/interface.py -> build/lib.dragonfly-5.9-x86_64-3.7/scikits/umfpack copying scikits/umfpack/version.py -> build/lib.dragonfly-5.9-x86_64-3.7/scikits/umfpack copying scikits/umfpack/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/scikits/umfpack copying scikits/umfpack/setup.py -> build/lib.dragonfly-5.9-x86_64-3.7/scikits/umfpack copying scikits/umfpack/umfpack.py -> build/lib.dragonfly-5.9-x86_64-3.7/scikits/umfpack copying build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack.py -> build/lib.dragonfly-5.9-x86_64-3.7/scikits/umfpack running build_ext customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmprxyl_dz6/tmp creating /tmp/tmprxyl_dz6/tmp/tmprxyl_dz6 compile options: '-MMD -MF /tmp/tmprxyl_dz6/file.c.d -c' cc: /tmp/tmprxyl_dz6/file.c customize UnixCCompiler using build_ext building 'scikits.umfpack.__umfpack' extension compiling C sources C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating build/temp.dragonfly-5.9-x86_64-3.7/build creating build/temp.dragonfly-5.9-x86_64-3.7/build/src.dragonfly-5.9-x86_64-3.7 creating build/temp.dragonfly-5.9-x86_64-3.7/build/src.dragonfly-5.9-x86_64-3.7/scikits creating build/temp.dragonfly-5.9-x86_64-3.7/build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack compile options: '-DSCIPY_UMFPACK_H -DSCIPY_AMD_H -DNO_ATLAS_INFO=1 -DHAVE_CBLAS -I/usr/local/include/suitesparse -I/usr/include -I/usr/local/include -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include/python3.7m -c' cc: build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:2713: /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c: In function '_wrap_umfpack_dl_solve': build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:3150:52: warning: passing argument 2 of 'umfpack_dl_solve' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_dl_solve(arg1,(long long const (*))arg2,(long long const (*))arg3,(double const (*))arg4,arg5,(double const (*))arg6,arg7,(double const (*))arg8,arg9); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:48, from build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:2712: /usr/local/include/suitesparse/umfpack_solve.h:26:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Ap [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:3150:78: warning: passing argument 3 of 'umfpack_dl_solve' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_dl_solve(arg1,(long long const (*))arg2,(long long const (*))arg3,(double const (*))arg4,arg5,(double const (*))arg6,arg7,(double const (*))arg8,arg9); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:48, from build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:2712: /usr/local/include/suitesparse/umfpack_solve.h:27:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Ai [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c: In function '_wrap_umfpack_zl_solve': build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:3292:52: warning: passing argument 2 of 'umfpack_zl_solve' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_zl_solve(arg1,(long long const (*))arg2,(long long const (*))arg3,(double const (*))arg4,(double const (*))arg5,arg6,arg7,(double const (*))arg8,(double const (*))arg9,arg10,(double const (*))arg11,arg12); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:48, from build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:2712: /usr/local/include/suitesparse/umfpack_solve.h:52:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Ap [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:3292:78: warning: passing argument 3 of 'umfpack_zl_solve' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_zl_solve(arg1,(long long const (*))arg2,(long long const (*))arg3,(double const (*))arg4,(double const (*))arg5,arg6,arg7,(double const (*))arg8,(double const (*))arg9,arg10,(double const (*))arg11,arg12); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:48, from build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:2712: /usr/local/include/suitesparse/umfpack_solve.h:53:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Ai [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c: In function '_wrap_umfpack_dl_triplet_to_col': build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:3550:71: warning: passing argument 4 of 'umfpack_dl_triplet_to_col' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_dl_triplet_to_col(arg1,arg2,arg3,(long long const (*))arg4,(long long const (*))arg5,(double const (*))arg6,arg7,arg8,arg9,arg10); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:58, from build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:2712: /usr/local/include/suitesparse/umfpack_triplet_to_col.h:29:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Ti [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:3550:97: warning: passing argument 5 of 'umfpack_dl_triplet_to_col' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_dl_triplet_to_col(arg1,arg2,arg3,(long long const (*))arg4,(long long const (*))arg5,(double const (*))arg6,arg7,arg8,arg9,arg10); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:58, from build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:2712: /usr/local/include/suitesparse/umfpack_triplet_to_col.h:30:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Tj [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c: In function '_wrap_umfpack_zl_triplet_to_col': build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:3760:71: warning: passing argument 4 of 'umfpack_zl_triplet_to_col' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_zl_triplet_to_col(arg1,arg2,arg3,(long long const (*))arg4,(long long const (*))arg5,(double const (*))arg6,(double const (*))arg7,arg8,arg9,arg10,arg11,arg12); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:58, from build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:2712: /usr/local/include/suitesparse/umfpack_triplet_to_col.h:57:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Ti [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:3760:97: warning: passing argument 5 of 'umfpack_zl_triplet_to_col' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_zl_triplet_to_col(arg1,arg2,arg3,(long long const (*))arg4,(long long const (*))arg5,(double const (*))arg6,(double const (*))arg7,arg8,arg9,arg10,arg11,arg12); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:58, from build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:2712: /usr/local/include/suitesparse/umfpack_triplet_to_col.h:58:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Tj [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c: In function '_wrap_umfpack_dl_col_to_triplet': build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:3826:61: warning: passing argument 2 of 'umfpack_dl_col_to_triplet' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_dl_col_to_triplet(arg1,(long long const (*))arg2,arg3); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:59, from build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:2712: /usr/local/include/suitesparse/umfpack_col_to_triplet.h:20:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Ap [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c: In function '_wrap_umfpack_zl_col_to_triplet': build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:3892:61: warning: passing argument 2 of 'umfpack_zl_col_to_triplet' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_zl_col_to_triplet(arg1,(long long const (*))arg2,arg3); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:59, from build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:2712: /usr/local/include/suitesparse/umfpack_col_to_triplet.h:34:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Ap [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c: In function '_wrap_umfpack_dl_transpose': build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:4050:61: warning: passing argument 3 of 'umfpack_dl_transpose' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_dl_transpose(arg1,arg2,(long long const (*))arg3,(long long const (*))arg4,(double const (*))arg5,(long long const (*))arg6,(long long const (*))arg7,arg8,arg9,arg10); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:60, from build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:2712: /usr/local/include/suitesparse/umfpack_transpose.h:28:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Ap [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:4050:87: warning: passing argument 4 of 'umfpack_dl_transpose' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_dl_transpose(arg1,arg2,(long long const (*))arg3,(long long const (*))arg4,(double const (*))arg5,(long long const (*))arg6,(long long const (*))arg7,arg8,arg9,arg10); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:60, from build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:2712: /usr/local/include/suitesparse/umfpack_transpose.h:29:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Ai [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:4050:136: warning: passing argument 6 of 'umfpack_dl_transpose' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_dl_transpose(arg1,arg2,(long long const (*))arg3,(long long const (*))arg4,(double const (*))arg5,(long long const (*))arg6,(long long const (*))arg7,arg8,arg9,arg10); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:60, from build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:2712: /usr/local/include/suitesparse/umfpack_transpose.h:31:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long P [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~ build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:4050:162: warning: passing argument 7 of 'umfpack_dl_transpose' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_dl_transpose(arg1,arg2,(long long const (*))arg3,(long long const (*))arg4,(double const (*))arg5,(long long const (*))arg6,(long long const (*))arg7,arg8,arg9,arg10); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:60, from build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:2712: /usr/local/include/suitesparse/umfpack_transpose.h:32:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Q [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~ build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c: In function '_wrap_umfpack_zl_transpose': build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:4244:61: warning: passing argument 3 of 'umfpack_zl_transpose' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_zl_transpose(arg1,arg2,(long long const (*))arg3,(long long const (*))arg4,(double const (*))arg5,(double const (*))arg6,(long long const (*))arg7,(long long const (*))arg8,arg9,arg10,arg11,arg12,arg13); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:60, from build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:2712: /usr/local/include/suitesparse/umfpack_transpose.h:57:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Ap [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:4244:87: warning: passing argument 4 of 'umfpack_zl_transpose' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_zl_transpose(arg1,arg2,(long long const (*))arg3,(long long const (*))arg4,(double const (*))arg5,(double const (*))arg6,(long long const (*))arg7,(long long const (*))arg8,arg9,arg10,arg11,arg12,arg13); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:60, from build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:2712: /usr/local/include/suitesparse/umfpack_transpose.h:58:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Ai [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:4244:159: warning: passing argument 7 of 'umfpack_zl_transpose' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_zl_transpose(arg1,arg2,(long long const (*))arg3,(long long const (*))arg4,(double const (*))arg5,(double const (*))arg6,(long long const (*))arg7,(long long const (*))arg8,arg9,arg10,arg11,arg12,arg13); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:60, from build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:2712: /usr/local/include/suitesparse/umfpack_transpose.h:60:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long P [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~ build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:4244:185: warning: passing argument 8 of 'umfpack_zl_transpose' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_zl_transpose(arg1,arg2,(long long const (*))arg3,(long long const (*))arg4,(double const (*))arg5,(double const (*))arg6,(long long const (*))arg7,(long long const (*))arg8,arg9,arg10,arg11,arg12,arg13); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:60, from build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:2712: /usr/local/include/suitesparse/umfpack_transpose.h:61:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Q [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~ build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c: In function '_wrap_umfpack_dl_symbolic': build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:4887:60: warning: passing argument 3 of 'umfpack_dl_symbolic' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_dl_symbolic(arg1,arg2,(long long const (*))arg3,(long long const (*))arg4,(double const (*))arg5,arg6,(double const (*))arg7,arg8); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:46, from build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:2712: /usr/local/include/suitesparse/umfpack_symbolic.h:26:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Ap [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:4887:86: warning: passing argument 4 of 'umfpack_dl_symbolic' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_dl_symbolic(arg1,arg2,(long long const (*))arg3,(long long const (*))arg4,(double const (*))arg5,arg6,(double const (*))arg7,arg8); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:46, from build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:2712: /usr/local/include/suitesparse/umfpack_symbolic.h:27:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Ai [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c: In function '_wrap_umfpack_zl_symbolic': build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:5013:60: warning: passing argument 3 of 'umfpack_zl_symbolic' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_zl_symbolic(arg1,arg2,(long long const (*))arg3,(long long const (*))arg4,(double const (*))arg5,(double const (*))arg6,arg7,(double const (*))arg8,arg9); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:46, from build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:2712: /usr/local/include/suitesparse/umfpack_symbolic.h:50:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Ap [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:5013:86: warning: passing argument 4 of 'umfpack_zl_symbolic' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_zl_symbolic(arg1,arg2,(long long const (*))arg3,(long long const (*))arg4,(double const (*))arg5,(double const (*))arg6,arg7,(double const (*))arg8,arg9); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:46, from build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:2712: /usr/local/include/suitesparse/umfpack_symbolic.h:51:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Ai [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c: In function '_wrap_umfpack_dl_numeric': build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:5119:49: warning: passing argument 1 of 'umfpack_dl_numeric' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_dl_numeric((long long const (*))arg1,(long long const (*))arg2,(double const (*))arg3,arg4,arg5,(double const (*))arg6,arg7); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:47, from build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:2712: /usr/local/include/suitesparse/umfpack_numeric.h:23:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Ap [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:5119:75: warning: passing argument 2 of 'umfpack_dl_numeric' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_dl_numeric((long long const (*))arg1,(long long const (*))arg2,(double const (*))arg3,arg4,arg5,(double const (*))arg6,arg7); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:47, from build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:2712: /usr/local/include/suitesparse/umfpack_numeric.h:24:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Ai [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c: In function '_wrap_umfpack_zl_numeric': build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:5233:49: warning: passing argument 1 of 'umfpack_zl_numeric' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_zl_numeric((long long const (*))arg1,(long long const (*))arg2,(double const (*))arg3,(double const (*))arg4,arg5,arg6,(double const (*))arg7,arg8); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:47, from build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:2712: /usr/local/include/suitesparse/umfpack_numeric.h:45:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Ap [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:5233:75: warning: passing argument 2 of 'umfpack_zl_numeric' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_zl_numeric((long long const (*))arg1,(long long const (*))arg2,(double const (*))arg3,(double const (*))arg4,arg5,arg6,(double const (*))arg7,arg8); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:47, from build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:2712: /usr/local/include/suitesparse/umfpack_numeric.h:46:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Ai [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.9-x86_64-3.7/build/src.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack_wrap.o -L/usr/local/lib -L/usr/local/lib -lrt -lumfpack -lamd -lamd -lumfpack -lopenblas -lblas -lpython3.7m -o build/lib.dragonfly-5.9-x86_64-3.7/scikits/umfpack/__umfpack.so SUCCEEDED 00:01:15 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> py37-scikit-umfpack-0.3.2_3 depends on package: py37-numpy>=1.16,1<1.20,1 - found ===> py37-scikit-umfpack-0.3.2_3 depends on package: py37-scipy>0 - found ===> py37-scikit-umfpack-0.3.2_3 depends on package: py37-setuptools>0 - found ===> py37-scikit-umfpack-0.3.2_3 depends on file: /usr/local/bin/python3.7 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for py37-scikit-umfpack-0.3.2_3 ===> py37-scikit-umfpack-0.3.2_3 depends on package: py37-numpy>=1.16,1<1.20,1 - found ===> py37-scikit-umfpack-0.3.2_3 depends on package: py37-scipy>0 - found ===> py37-scikit-umfpack-0.3.2_3 depends on package: py37-setuptools>0 - found ===> py37-scikit-umfpack-0.3.2_3 depends on file: /usr/local/bin/python3.7 - found ===> Generating temporary packing list setup.py:56: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses import imp umfpack_info: customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmppfo7z9wo/tmp creating /tmp/tmppfo7z9wo/tmp/tmppfo7z9wo compile options: '-MMD -MF /tmp/tmppfo7z9wo/file.c.d -c' cc: /tmp/tmppfo7z9wo/file.c amd_info: customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpwlokosg5/tmp creating /tmp/tmpwlokosg5/tmp/tmpwlokosg5 compile options: '-MMD -MF /tmp/tmpwlokosg5/file.c.d -c' cc: /tmp/tmpwlokosg5/file.c customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmp6ve7nel9/tmp creating /tmp/tmp6ve7nel9/tmp/tmp6ve7nel9 compile options: '-MMD -MF /tmp/tmp6ve7nel9/file.c.d -c' cc: /tmp/tmp6ve7nel9/file.c FOUND: libraries = ['amd', 'amd'] library_dirs = ['/usr/local/lib'] include_dirs = ['/usr/local/include/suitesparse'] define_macros = [('SCIPY_AMD_H', None)] swig_opts = ['-I/usr/local/include/suitesparse'] customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpcrpfxzux/tmp creating /tmp/tmpcrpfxzux/tmp/tmpcrpfxzux compile options: '-MMD -MF /tmp/tmpcrpfxzux/file.c.d -c' cc: /tmp/tmpcrpfxzux/file.c FOUND: libraries = ['umfpack', 'amd', 'amd', 'umfpack'] library_dirs = ['/usr/local/lib'] include_dirs = ['/usr/local/include/suitesparse'] define_macros = [('SCIPY_UMFPACK_H', None), ('SCIPY_AMD_H', None)] swig_opts = ['-I/usr/local/include/suitesparse', '-I/usr/local/include/suitesparse'] blas_opt_info: blas_mkl_info: customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpx2p8ygoa/tmp creating /tmp/tmpx2p8ygoa/tmp/tmpx2p8ygoa compile options: '-MMD -MF /tmp/tmpx2p8ygoa/file.c.d -c' cc: /tmp/tmpx2p8ygoa/file.c libraries mkl_rt not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../../'] NOT AVAILABLE blis_info: customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmphk_l16cw/tmp creating /tmp/tmphk_l16cw/tmp/tmphk_l16cw compile options: '-MMD -MF /tmp/tmphk_l16cw/file.c.d -c' cc: /tmp/tmphk_l16cw/file.c libraries blis not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../../'] NOT AVAILABLE atlas_3_10_blas_threads_info: Setting PTATLAS=ATLAS customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmplszyyo8r/tmp creating /tmp/tmplszyyo8r/tmp/tmplszyyo8r compile options: '-MMD -MF /tmp/tmplszyyo8r/file.c.d -c' cc: /tmp/tmplszyyo8r/file.c libraries tatlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../../'] NOT AVAILABLE atlas_3_10_blas_info: customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpglfsredx/tmp creating /tmp/tmpglfsredx/tmp/tmpglfsredx compile options: '-MMD -MF /tmp/tmpglfsredx/file.c.d -c' cc: /tmp/tmpglfsredx/file.c libraries satlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../../'] NOT AVAILABLE atlas_blas_threads_info: Setting PTATLAS=ATLAS customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpeca9237u/tmp creating /tmp/tmpeca9237u/tmp/tmpeca9237u compile options: '-MMD -MF /tmp/tmpeca9237u/file.c.d -c' cc: /tmp/tmpeca9237u/file.c libraries ptf77blas,ptcblas,atlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../../'] NOT AVAILABLE atlas_blas_info: customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpkj8qpf8x/tmp creating /tmp/tmpkj8qpf8x/tmp/tmpkj8qpf8x compile options: '-MMD -MF /tmp/tmpkj8qpf8x/file.c.d -c' cc: /tmp/tmpkj8qpf8x/file.c libraries f77blas,cblas,atlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0/../../../'] NOT AVAILABLE accelerate_info: NOT AVAILABLE /usr/local/lib/python3.7/site-packages/numpy/distutils/system_info.py:641: UserWarning: Atlas (http://math-atlas.sourceforge.net/) libraries not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [atlas]) or by setting the ATLAS environment variable. self.calc_info() blas_info: customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmp4h4l9644/tmp creating /tmp/tmp4h4l9644/tmp/tmp4h4l9644 compile options: '-MMD -MF /tmp/tmp4h4l9644/file.c.d -c' cc: /tmp/tmp4h4l9644/file.c customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpnme0scjp/tmp creating /tmp/tmpnme0scjp/tmp/tmpnme0scjp compile options: '-MMD -MF /tmp/tmpnme0scjp/file.c.d -c' cc: /tmp/tmpnme0scjp/file.c C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmp86ds59t8/tmp creating /tmp/tmp86ds59t8/tmp/tmp86ds59t8 compile options: '-I/usr/include -I/usr/local/include -I/usr/local/include/suitesparse -c' cc: /tmp/tmp86ds59t8/source.c cc /tmp/tmp86ds59t8/tmp/tmp86ds59t8/source.o -L/usr/local/lib -lcblas -o /tmp/tmp86ds59t8/a.out /usr/libexec/binutils234/elf/ld.gold: error: cannot find -lcblas /tmp/tmp86ds59t8/tmp/tmp86ds59t8/source.o:source.c:function main: error: undefined reference to 'cblas_ddot' collect2: error: ld returned 1 exit status cc /tmp/tmp86ds59t8/tmp/tmp86ds59t8/source.o -L/usr/local/lib -lblas -o /tmp/tmp86ds59t8/a.out /tmp/tmp86ds59t8/tmp/tmp86ds59t8/source.o:source.c:function main: error: undefined reference to 'cblas_ddot' collect2: error: ld returned 1 exit status cc /tmp/tmp86ds59t8/tmp/tmp86ds59t8/source.o -L/usr/local/lib -lopenblas -o /tmp/tmp86ds59t8/a.out customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpd6nl1zio/tmp creating /tmp/tmpd6nl1zio/tmp/tmpd6nl1zio compile options: '-MMD -MF /tmp/tmpd6nl1zio/file.c.d -c' cc: /tmp/tmpd6nl1zio/file.c FOUND: libraries = ['openblas', 'blas'] library_dirs = ['/usr/local/lib'] include_dirs = ['/usr/include', '/usr/local/include', '/usr/local/include/suitesparse'] language = c define_macros = [('HAVE_CBLAS', None)] FOUND: define_macros = [('NO_ATLAS_INFO', 1), ('HAVE_CBLAS', None)] libraries = ['openblas', 'blas'] library_dirs = ['/usr/local/lib'] include_dirs = ['/usr/include', '/usr/local/include', '/usr/local/include/suitesparse'] language = c running install running build running config_cc unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src build_src building extension "scikits.umfpack.__umfpack" sources adding 'scikits/umfpack/umfpack.i' to sources. building data_files sources build_src: building npy-pkg config files running build_py copying scikits/umfpack/version.py -> build/lib.dragonfly-5.9-x86_64-3.7/scikits/umfpack running build_ext customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmp4816n_27/tmp creating /tmp/tmp4816n_27/tmp/tmp4816n_27 compile options: '-MMD -MF /tmp/tmp4816n_27/file.c.d -c' cc: /tmp/tmp4816n_27/file.c customize UnixCCompiler using build_ext running install_lib creating /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.7 creating /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.7/site-packages creating /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.7/site-packages/scikits creating /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.7/site-packages/scikits/umfpack copying build/lib.dragonfly-5.9-x86_64-3.7/scikits/umfpack/__umfpack.so -> /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.7/site-packages/scikits/umfpack copying build/lib.dragonfly-5.9-x86_64-3.7/scikits/umfpack/_umfpack.py -> /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.7/site-packages/scikits/umfpack copying build/lib.dragonfly-5.9-x86_64-3.7/scikits/umfpack/interface.py -> /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.7/site-packages/scikits/umfpack copying build/lib.dragonfly-5.9-x86_64-3.7/scikits/umfpack/version.py -> /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.7/site-packages/scikits/umfpack copying build/lib.dragonfly-5.9-x86_64-3.7/scikits/umfpack/__init__.py -> /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.7/site-packages/scikits/umfpack copying build/lib.dragonfly-5.9-x86_64-3.7/scikits/umfpack/setup.py -> /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.7/site-packages/scikits/umfpack copying build/lib.dragonfly-5.9-x86_64-3.7/scikits/umfpack/umfpack.py -> /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.7/site-packages/scikits/umfpack byte-compiling /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.7/site-packages/scikits/umfpack/_umfpack.py to _umfpack.cpython-37.pyc byte-compiling /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.7/site-packages/scikits/umfpack/interface.py to interface.cpython-37.pyc byte-compiling /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.7/site-packages/scikits/umfpack/version.py to version.cpython-37.pyc byte-compiling /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.7/site-packages/scikits/umfpack/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.7/site-packages/scikits/umfpack/setup.py to setup.cpython-37.pyc byte-compiling /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.7/site-packages/scikits/umfpack/umfpack.py to umfpack.cpython-37.pyc writing byte-compilation script '/tmp/tmpbj_te4i3.py' /usr/local/bin/python3.7 /tmp/tmpbj_te4i3.py removing /tmp/tmpbj_te4i3.py running install_data creating /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.7/site-packages/scikits/umfpack/tests copying scikits/umfpack/tests/test_umfpack.py -> /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.7/site-packages/scikits/umfpack/tests/ copying scikits/umfpack/tests/test_interface.py -> /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.7/site-packages/scikits/umfpack/tests/ copying scikits/umfpack/tests/try_umfpack.py -> /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.7/site-packages/scikits/umfpack/tests/ copying scikits/__init__.py -> /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.7/site-packages/scikits copying MANIFEST.in -> /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.7/site-packages/ running install_clib customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpgnt_y84t/tmp creating /tmp/tmpgnt_y84t/tmp/tmpgnt_y84t compile options: '-MMD -MF /tmp/tmpgnt_y84t/file.c.d -c' cc: /tmp/tmpgnt_y84t/file.c running install_egg_info running egg_info creating scikit_umfpack.egg-info writing scikit_umfpack.egg-info/PKG-INFO writing dependency_links to scikit_umfpack.egg-info/dependency_links.txt writing requirements to scikit_umfpack.egg-info/requires.txt writing top-level names to scikit_umfpack.egg-info/top_level.txt writing manifest file 'scikit_umfpack.egg-info/SOURCES.txt' reading manifest file 'scikit_umfpack.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'scikit_umfpack.egg-info/SOURCES.txt' Copying scikit_umfpack.egg-info to /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.7/site-packages/scikit_umfpack-0.3.2-py3.7.egg-info running install_scripts writing list of installed files to '/construction/math/py-scikit-umfpack/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: 'lib/python3.7/site-packages/scikits/umfpack/__umfpack.so' is not stripped consider trying INSTALL_TARGET=install-strip or using ${STRIP_CMD} Error: /usr/local/lib/python3.7/site-packages/scikits/umfpack/__umfpack.so is linked to /usr/local/lib/libopenblas.so.0 from math/openblas but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libopenblas.so:math/openblas Error: /usr/local/lib/python3.7/site-packages/scikits/umfpack/__umfpack.so is linked to /usr/local/lib/libblas.so.2 from math/blas but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libblas.so:math/blas Error: /usr/local/lib/python3.7/site-packages/scikits/umfpack/__umfpack.so is linked to /usr/local/lib/gcc8/libgfortran.so.5 from lang/gcc8 but it is not declared as a dependency Error: /usr/local/lib/python3.7/site-packages/scikits/umfpack/__umfpack.so is linked to /usr/local/lib/gcc8/libgcc_s.so.1 from lang/gcc8 but it is not declared as a dependency Error: /usr/local/lib/python3.7/site-packages/scikits/umfpack/__umfpack.so is linked to /usr/local/lib/gcc8/libquadmath.so.0 from lang/gcc8 but it is not declared as a dependency Error: /usr/local/lib/python3.7/site-packages/scikits/umfpack/__umfpack.so is linked to /usr/local/lib/libintl.so.8 from devel/gettext-runtime but it is not declared as a dependency Warning: you need USES+=gettext-runtime Error: /usr/local/lib/python3.7/site-packages/scikits/umfpack/__umfpack.so is linked to /usr/local/lib/libmetis.so.2 from math/metis but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libmetis.so:math/metis Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:01:12 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- ====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for py37-scikit-umfpack-0.3.2_3 file sizes/checksums [30]: 0% file sizes/checksums [30]: 100% packing files [30]: 0% packing files [30]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:01 TOTAL TIME 00:04:18