------------------------------------------------------------------------------- -- Phase: Environment ------------------------------------------------------------------------------- NO_DEPENDS=1 UNAME_r=5.9 UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=unknown UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 LANG=C HOME=/root USER=root TERM=dumb SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: showconfig ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ENV ------------------------------------------------------------------------------- F77="gfortran8" FC="gfortran8" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc8" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc8" PKG_CONFIG=pkgconf XDG_DATA_HOME=/construction/graphics/R-cran-rgdal XDG_CONFIG_HOME=/construction/graphics/R-cran-rgdal HOME=/construction/graphics/R-cran-rgdal TMPDIR="/tmp" PATH=/construction/graphics/R-cran-rgdal/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ARGS ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ENV ------------------------------------------------------------------------------- F77="gfortran8" FC="gfortran8" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc8" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc8" XDG_DATA_HOME=/construction/graphics/R-cran-rgdal XDG_CONFIG_HOME=/construction/graphics/R-cran-rgdal HOME=/construction/graphics/R-cran-rgdal TMPDIR="/tmp" PATH=/construction/graphics/R-cran-rgdal/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ARGS ------------------------------------------------------------------------------- DESTDIR=/construction/graphics/R-cran-rgdal/stage SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: PLIST_SUB ------------------------------------------------------------------------------- R_MOD_DIR=lib/R/library/rgdal OSREL=5.9 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/rgdal" EXAMPLESDIR="share/examples/rgdal" DATADIR="share/rgdal" WWWDIR="www/rgdal" ETCDIR="etc/rgdal" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: SUB_LIST ------------------------------------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/rgdal DOCSDIR=/usr/local/share/doc/rgdal EXAMPLESDIR=/usr/local/share/examples/rgdal WWWDIR=/usr/local/www/rgdal ETCDIR=/usr/local/etc/rgdal SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: /etc/make.conf ------------------------------------------------------------------------------- DPORTS_BUILDER=yes DISABLE_LICENSES=yes DEFAULT_VERSIONS=ssl=openssl FORCE_PACKAGE=yes DEVELOPER=yes USE_PACKAGE_DEPENDS_ONLY=yes PORTSDIR=/xports PORT_DBDIR=/options PKG_DBDIR=/var/db/pkg PKG_CACHEDIR=/var/cache/pkg PKG_SUFX=.txz DEVELOPER=1 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500906 OSVERSION=9999999 OSREL=5.9 _OSRELEASE=5.9-SYNTH DISTDIR=/distfiles WRKDIRPREFIX=/construction BATCH=yes PACKAGE_BUILDING=yes PKG_CREATE_VERBOSE=yes MAKE_JOBS_NUMBER=10 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/libnghttp2-1.42.0.txz Installing /packages/All/ca_root_nss-3.58.txz ===== Message from ca_root_nss-3.58: -- FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem Installing /packages/All/openssl-1.1.1i,1.txz Installing /packages/All/curl-7.74.0.txz Installing /packages/All/pcre2-10.36.txz Installing /packages/All/icu-68.2,1.txz Installing /packages/All/png-1.6.37.txz Installing /packages/All/jbigkit-2.1_1.txz Installing /packages/All/jpeg-turbo-2.0.6.txz Installing /packages/All/tiff-4.2.0.txz Installing /packages/All/ncurses-6.2.20210116.txz Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/readline-8.0.4_1.txz Installing /packages/All/gettext-runtime-0.21.txz Installing /packages/All/freetype2-2.10.4.txz ===== Message from freetype2-2.10.4: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/site/index.html, if documentation was installed). Installing /packages/All/expat-2.2.10.txz Installing /packages/All/fontconfig-2.13.92_2,1.txz Running fc-cache to build fontconfig cache... Font directories: /usr/local/share/fonts /usr/local/lib/X11/fonts /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory fc-cache: succeeded Installing /packages/All/pcre-8.44.txz Installing /packages/All/libffi-3.3_1.txz Installing /packages/All/libxml2-2.9.10_2.txz Installing /packages/All/libiconv-1.16.txz Installing /packages/All/python37-3.7.9_1.txz ===== Message from python37-3.7.9_1: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py37-gdbm databases/py-gdbm@py37 py37-sqlite3 databases/py-sqlite3@py37 py37-tkinter x11-toolkits/py-tkinter@py37 Installing /packages/All/glib-2.66.4_1,1.txz No schema files found: doing nothing. Installing /packages/All/pixman-0.40.0_1.txz Installing /packages/All/libpthread-stubs-0.4.txz Installing /packages/All/libXau-1.0.9.txz Installing /packages/All/xorgproto-2020.1.txz Installing /packages/All/libXdmcp-1.1.3.txz Installing /packages/All/libxcb-1.14_1.txz Installing /packages/All/libX11-1.6.12,1.txz Installing /packages/All/libXext-1.3.4,1.txz Installing /packages/All/libXrender-0.9.10_2.txz Installing /packages/All/cairo-1.16.0_1,3.txz Installing /packages/All/graphite2-1.3.14.txz Installing /packages/All/harfbuzz-2.7.4.txz Installing /packages/All/fribidi-1.0.10.txz Installing /packages/All/libfontenc-1.1.4.txz Installing /packages/All/mkfontscale-1.2.1.txz Installing /packages/All/font-bh-ttf-1.0.3_4.txz Installing /packages/All/font-misc-meltho-1.0.3_4.txz Installing /packages/All/font-misc-ethiopic-1.0.4.txz Installing /packages/All/encodings-1.0.5,1.txz Installing /packages/All/dejavu-2.37_1.txz ===== Message from dejavu-2.37_1: -- Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. Installing /packages/All/xorg-fonts-truetype-7.7_1.txz Installing /packages/All/libXft-2.3.3.txz Installing /packages/All/pango-1.42.4_5.txz Installing /packages/All/tcl86-8.6.11_1.txz Installing /packages/All/libXScrnSaver-1.2.3_2.txz Installing /packages/All/tk86-8.6.11_2.txz Installing /packages/All/gmake-4.3_2.txz Installing /packages/All/libidn-1.35.txz Installing /packages/All/jbig2dec-0.19.txz Installing /packages/All/libpaper-1.1.24.4.txz Installing /packages/All/libdaemon-0.14_1.txz Installing /packages/All/libICE-1.0.10,1.txz Installing /packages/All/libSM-1.2.3,1.txz Installing /packages/All/dbus-1.12.20_3.txz ===> Creating groups. Creating group 'messagebus' with gid '556'. ===> Creating users Creating user 'messagebus' with uid '556'. Installing /packages/All/dbus-glib-0.110.txz Installing /packages/All/gdbm-1.19.txz Installing /packages/All/libevent-2.1.12.txz Installing /packages/All/gnome_subr-1.0.txz Installing /packages/All/avahi-app-0.8.txz ===> Creating groups. Creating group 'avahi' with gid '558'. ===> Creating users Creating user 'avahi' with uid '558'. Installing /packages/All/gmp-6.2.1.txz Installing /packages/All/nettle-3.6.txz Installing /packages/All/libtasn1-4.16.0_1.txz Installing /packages/All/libunistring-0.9.10_1.txz Installing /packages/All/libidn2-2.3.0_1.txz Installing /packages/All/bash-5.1.4_1.txz Installing /packages/All/bash-completion-2.11,2.txz ===== Message from bash-completion-2.11,2: -- To enable the bash completion library, add the following to your .bashrc file: [[ $PS1 && -f /usr/local/share/bash-completion/bash_completion.sh ]] && \ source /usr/local/share/bash-completion/bash_completion.sh See /usr/local/share/doc/bash-completion/README.md for more information. Installing /packages/All/p11-kit-0.23.22.txz Installing /packages/All/tpm-emulator-0.7.4_2.txz ===> Creating groups. Creating group '_tss' with gid '601'. ===> Creating users Creating user '_tss' with uid '601'. Installing /packages/All/trousers-0.3.14_3.txz ===> Creating groups. Using existing group '_tss'. ===> Creating users Using existing user '_tss'. ===== Message from trousers-0.3.14_3: -- To run tcsd automatically, add the following line to /etc/rc.conf: tcsd_enable="YES" You might want to edit /usr/local/etc/tcsd.conf to reflect your setup. If you want to use tcsd with software TPM emulator, use the following configuration in /etc/rc.conf: tcsd_enable="YES" tcsd_mode="emulator" tpmd_enable="YES" To use TPM, add your_account to '_tss' group like following: # pw groupmod _tss -m your_account Installing /packages/All/gnutls-3.6.15.txz Installing /packages/All/cups-2.3.3_1.txz ===> Creating groups. Creating group 'cups' with gid '193'. ===> Creating users Creating user 'cups' with uid '193'. Installing /packages/All/poppler-data-0.4.10.txz Installing /packages/All/ghostscript9-agpl-base-9.52_13.txz ===== Message from ghostscript9-agpl-base-9.52_13: -- This package installs a script named dvipdf that depends on dvips. If you want to use this script you need to install print/tex-dvipsk. Installing /packages/All/mpfr-4.1.0.txz Installing /packages/All/mpc-1.1.0_2.txz UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/binutils-2.33.1_4,1.txz Installing /packages/All/gcc8-8.4.0.txz ===== Message from gcc8-8.4.0: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/libXt-1.2.0,1.txz Installing /packages/All/libXmu-1.1.3,1.txz Installing /packages/All/R-4.0.3_1.txz Installing /packages/All/R-cran-sp-1.4.4.txz Installing /packages/All/pkgconf-1.7.3,1.txz Installing /packages/All/libedit-3.1.20191231,1.txz Installing /packages/All/sqlite3-3.34.0,1.txz Installing /packages/All/proj-7.2.0,1.txz ===== Message from proj-7.2.0,1: -- Since proj 7, datum grids are available from a CDN at https://cdn.proj.org and should either be fetched dynamically at runtime (disabled by default, cf https://proj.org/usage/network.html) or be fetched locally depending on your work area needs, using the projsync command. DATA option allows you to download all the data, but it requires more than 400mb! This option is disabled by default. It is better to use the projsync command. Use projsync --list-files to list the CDN content. They can either by installed in the user homedir (under ~/.local/share/proj) $ projsync --file fr_ign_ntf_r93.tif Downloading from https://cdn.proj.org into /home/user/.local/share/proj Total to download: 93581 bytes Downloading https://cdn.proj.org/fr_ign_ntf_r93.tif... (1 / 1) or systemwide in the default PROJ_LIB dir (under /usr/local/share/proj, cf https://proj.org/resource_files.html) # projsync --system-directory --file fr_ign_ntf_r93.tif Downloading from https://cdn.proj.org into /usr/local/share/proj Total to download: 93581 bytes Downloading https://cdn.proj.org/fr_ign_ntf_r93.tif... (1 / 1) If not using the default, make sure to set PROJ_LIB environment variable accordingly. Installing /packages/All/libgeotiff-1.6.0_2.txz Installing /packages/All/giflib-5.2.1.txz Installing /packages/All/json-c-0.15_1.txz Installing /packages/All/qhull-7.2.1,1.txz Installing /packages/All/wayland-1.18.0.txz Installing /packages/All/liblz4-1.9.3,1.txz Installing /packages/All/zstd-1.4.5_1.txz Installing /packages/All/pciids-20201127.txz Installing /packages/All/libpciaccess-0.16.txz Installing /packages/All/libdrm-2.4.101.txz Installing /packages/All/libunwind-20200331_1.txz Installing /packages/All/libXfixes-5.0.3_2.txz Installing /packages/All/libXdamage-1.1.5.txz Installing /packages/All/libxshmfence-1.3.txz Installing /packages/All/libXxf86vm-1.1.4_3.txz Installing /packages/All/libXrandr-1.5.2.txz Installing /packages/All/mesa-libs-20.2.3.txz Installing /packages/All/libGLU-9.0.1.txz Installing /packages/All/libXi-1.7.10,1.txz Installing /packages/All/freeglut-3.0.0_2.txz ===== Message from freeglut-3.0.0_2: -- Joystick support is untested and it is unknown if it works. Do not hesitate to contact x11@FreeBSD.org if this causes issues. Installing /packages/All/jasper-2.0.24.txz Installing /packages/All/gdal-3.1.4_4.txz UNFLAVORED devel/binutils -> use devel/binutils@native SUCCEEDED 00:01:49 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> R-cran-rgdal-1.5.19 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> R-cran-rgdal-1.5.19 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by R-cran-rgdal-1.5.19 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> R-cran-rgdal-1.5.19 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by R-cran-rgdal-1.5.19 for building => SHA256 Checksum OK for rgdal_1.5-19.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> R-cran-rgdal-1.5.19 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by R-cran-rgdal-1.5.19 for building ===> Extracting for R-cran-rgdal-1.5.19 => SHA256 Checksum OK for rgdal_1.5-19.tar.gz. Extracted Memory Use: 7.75M SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for R-cran-rgdal-1.5.19 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> R-cran-rgdal-1.5.19 depends on package: R-cran-sp>=1.1.0 - found ===> R-cran-rgdal-1.5.19 depends on file: /usr/local/bin/R - found ===> R-cran-rgdal-1.5.19 depends on executable: gfortran8 - found ===> R-cran-rgdal-1.5.19 depends on package: pkgconf>=1.3.0_1 - found ===> R-cran-rgdal-1.5.19 depends on file: /usr/local/bin/as - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- ===> R-cran-rgdal-1.5.19 depends on shared library: libgdal.so - found (/usr/local/lib/libgdal.so) ===> R-cran-rgdal-1.5.19 depends on shared library: libproj.so - found (/usr/local/lib/libproj.so) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> R-cran-rgdal-1.5.19 depends on package: R-cran-sp>=1.1.0 - found ===> R-cran-rgdal-1.5.19 depends on file: /usr/local/bin/R - found ===> R-cran-rgdal-1.5.19 depends on executable: gfortran8 - found ===> R-cran-rgdal-1.5.19 depends on package: pkgconf>=1.3.0_1 - found ===> R-cran-rgdal-1.5.19 depends on file: /usr/local/bin/as - found ===> R-cran-rgdal-1.5.19 depends on shared library: libgdal.so - found (/usr/local/lib/libgdal.so) ===> R-cran-rgdal-1.5.19 depends on shared library: libproj.so - found (/usr/local/lib/libproj.so) ===> Configuring for R-cran-rgdal-1.5.19 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> R-cran-rgdal-1.5.19 depends on package: R-cran-sp>=1.1.0 - found ===> R-cran-rgdal-1.5.19 depends on file: /usr/local/bin/R - found ===> R-cran-rgdal-1.5.19 depends on executable: gfortran8 - found SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for R-cran-rgdal-1.5.19 ===> R-cran-rgdal-1.5.19 depends on package: R-cran-sp>=1.1.0 - found ===> R-cran-rgdal-1.5.19 depends on file: /usr/local/bin/R - found ===> R-cran-rgdal-1.5.19 depends on executable: gfortran8 - found ===> Generating temporary packing list * installing *source* package 'rgdal' ... ** package 'rgdal' successfully unpacked and MD5 sums checked ** using staged installation configure: R_HOME: /usr/local/lib/R configure: CC: cc configure: CXX: c++ configure: CFLAGS: -pipe -O2 -fno-strict-aliasing configure: CPPFLAGS: configure: CXXFLAGS: -pipe -O2 -fno-strict-aliasing configure: LDFLAGS: -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin configure: LDFLAGS: -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin configure: CXX11 is: c++, CXX11STD is: -std=gnu++11 configure: CXX is: c++ -std=gnu++11 configure: C++11 support available configure: rgdal: 1.5-19 checking for /usr/bin/svnversion... no configure: svn revision: 1092 checking for gdal-config... /usr/local/bin/gdal-config checking gdal-config usability... yes configure: GDAL: 3.1.4 checking GDAL version >= 1.11.4... yes checking GDAL version <= 2.5 or >= 3.0... yes checking GDAL: linking with --libs only... yes checking GDAL: gdal-config data directory readable... yes checking GDAL: /usr/local/share/gdal/stateplane.csv readable... yes configure: pkg-config proj exists, will use it configure: PROJ version: 7.2.0 configure: PROJ CPP flags: -DPROJ_H_API -I/usr/local/include configure: PROJ LIBS: -L/usr/local/lib -lproj checking PROJ header API:... yes checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether c++ -std=gnu++11 accepts -g... yes checking how to run the C++ preprocessor... c++ -std=gnu++11 -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking proj.h usability... yes checking proj.h presence... yes checking for proj.h... yes checking for proj_context_create in -lproj... yes checking Using GDAL < 3 with PROJ >= 6... no checking PROJ version >= 4.8.0... yes checking PROJ: proj.db found and readable... yes configure: Package CPP flags: -I/usr/local/include -I/usr/local/include -DPROJ_H_API configure: Package LIBS: -L/usr/local/lib -lgdal -L/usr/local/lib -lproj configure: creating ./config.status config.status: creating src/Makevars ** libs gmake[1]: Entering directory '/construction/graphics/R-cran-rgdal/rgdal/src' c++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DPROJ_H_API -I'/usr/local/lib/R/library/sp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -pipe -DLIBICONV_PLUG -O2 -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c OGR_write.cpp -o OGR_write.o c++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DPROJ_H_API -I'/usr/local/lib/R/library/sp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -pipe -DLIBICONV_PLUG -O2 -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c gdal-bindings.cpp -o gdal-bindings.o cc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DPROJ_H_API -I'/usr/local/lib/R/library/sp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -pipe -DLIBICONV_PLUG -O2 -isystem /usr/local/include -fno-strict-aliasing -c init.c -o init.o cc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DPROJ_H_API -I'/usr/local/lib/R/library/sp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -pipe -DLIBICONV_PLUG -O2 -isystem /usr/local/include -fno-strict-aliasing -c inverser.c -o inverser.o cc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DPROJ_H_API -I'/usr/local/lib/R/library/sp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -pipe -DLIBICONV_PLUG -O2 -isystem /usr/local/include -fno-strict-aliasing -c local_stubs.c -o local_stubs.o c++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DPROJ_H_API -I'/usr/local/lib/R/library/sp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -pipe -DLIBICONV_PLUG -O2 -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c ogr_geom.cpp -o ogr_geom.o cc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DPROJ_H_API -I'/usr/local/lib/R/library/sp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -pipe -DLIBICONV_PLUG -O2 -isystem /usr/local/include -fno-strict-aliasing -c ogr_polygons.c -o ogr_polygons.o c++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DPROJ_H_API -I'/usr/local/lib/R/library/sp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -pipe -DLIBICONV_PLUG -O2 -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c ogr_proj.cpp -o ogr_proj.o c++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DPROJ_H_API -I'/usr/local/lib/R/library/sp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -pipe -DLIBICONV_PLUG -O2 -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c ogrdrivers.cpp -o ogrdrivers.o c++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DPROJ_H_API -I'/usr/local/lib/R/library/sp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -pipe -DLIBICONV_PLUG -O2 -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c ogrsource.cpp -o ogrsource.o c++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DPROJ_H_API -I'/usr/local/lib/R/library/sp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -pipe -DLIBICONV_PLUG -O2 -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c proj6.cpp -o proj6.o c++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DPROJ_H_API -I'/usr/local/lib/R/library/sp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -pipe -DLIBICONV_PLUG -O2 -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c proj_info6.cpp -o proj_info6.o c++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DPROJ_H_API -I'/usr/local/lib/R/library/sp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -pipe -DLIBICONV_PLUG -O2 -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c proj_network7.cpp -o proj_network7.o c++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DPROJ_H_API -I'/usr/local/lib/R/library/sp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -pipe -DLIBICONV_PLUG -O2 -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c projectit.cpp -o projectit.o c++ -std=gnu++11 -shared -L/usr/local/lib/R/lib -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -o rgdal.so OGR_write.o gdal-bindings.o init.o inverser.o local_stubs.o ogr_geom.o ogr_polygons.o ogr_proj.o ogrdrivers.o ogrsource.o proj6.o proj_info6.o proj_network7.o projectit.o -L/usr/local/lib -lgdal -L/usr/local/lib -lproj -L/usr/local/lib/R/lib -lR gmake[1]: Leaving directory '/construction/graphics/R-cran-rgdal/rgdal/src' installing to /construction/graphics/R-cran-rgdal/stage/usr/local/lib/R/library/00LOCK-rgdal/00new/rgdal/libs ** R ** data ** inst ** tests ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rgdal) /usr/bin/find /construction/graphics/R-cran-rgdal/stage/usr/local/lib/R/library/rgdal -name '*.so' -exec /usr/bin/strip {} + ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Error: /usr/local/lib/R/library/rgdal/libs/rgdal.so is linked to /usr/local/lib/libcrypto.so.11 from security/openssl but it is not declared as a dependency Warning: you need USES=ssl Error: /usr/local/lib/R/library/rgdal/libs/rgdal.so is linked to /usr/local/lib/libjson-c.so.5 from devel/json-c but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libjson-c.so:devel/json-c Error: /usr/local/lib/R/library/rgdal/libs/rgdal.so is linked to /usr/local/lib/libqhull.so.7 from math/qhull but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libqhull.so:math/qhull Error: /usr/local/lib/R/library/rgdal/libs/rgdal.so is linked to /usr/local/lib/libjasper.so.4 from graphics/jasper but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libjasper.so:graphics/jasper Error: /usr/local/lib/R/library/rgdal/libs/rgdal.so is linked to /usr/local/lib/libgif.so.7 from graphics/giflib but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libgif.so:graphics/giflib Error: /usr/local/lib/R/library/rgdal/libs/rgdal.so is linked to /usr/local/lib/libjpeg.so.8 from graphics/jpeg-turbo but it is not declared as a dependency Warning: you need USES+=jpeg Error: /usr/local/lib/R/library/rgdal/libs/rgdal.so is linked to /usr/local/lib/libgeotiff.so.5 from graphics/libgeotiff but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libgeotiff.so:graphics/libgeotiff Error: /usr/local/lib/R/library/rgdal/libs/rgdal.so is linked to /usr/local/lib/libtiff.so.5 from graphics/tiff but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libtiff.so:graphics/tiff Error: /usr/local/lib/R/library/rgdal/libs/rgdal.so is linked to /usr/local/lib/libpng16.so.16 from graphics/png but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libpng16.so:graphics/png Error: /usr/local/lib/R/library/rgdal/libs/rgdal.so is linked to /usr/local/lib/libsqlite3.so.0 from databases/sqlite3 but it is not declared as a dependency Warning: you need USES+=sqlite Error: /usr/local/lib/R/library/rgdal/libs/rgdal.so is linked to /usr/local/lib/libcurl.so.4 from ftp/curl but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libcurl.so:ftp/curl Error: /usr/local/lib/R/library/rgdal/libs/rgdal.so is linked to /usr/local/lib/libintl.so.8 from devel/gettext-runtime but it is not declared as a dependency Warning: you need USES+=gettext-runtime Error: /usr/local/lib/R/library/rgdal/libs/rgdal.so is linked to /usr/local/lib/libreadline.so.8 from devel/readline but it is not declared as a dependency Warning: you need USES+=readline Error: /usr/local/lib/R/library/rgdal/libs/rgdal.so is linked to /usr/local/lib/libpcre2-8.so.0 from devel/pcre2 but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libpcre2-8.so:devel/pcre2 Error: /usr/local/lib/R/library/rgdal/libs/rgdal.so is linked to /usr/local/lib/libicuuc.so.68 from devel/icu but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libicuuc.so:devel/icu Error: /usr/local/lib/R/library/rgdal/libs/rgdal.so is linked to /usr/local/lib/libicui18n.so.68 from devel/icu but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libicui18n.so:devel/icu Error: /usr/local/lib/R/library/rgdal/libs/rgdal.so is linked to /usr/local/lib/libjbig.so.2 from graphics/jbigkit but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libjbig.so:graphics/jbigkit Error: /usr/local/lib/R/library/rgdal/libs/rgdal.so is linked to /usr/local/lib/libnghttp2.so.14 from www/libnghttp2 but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libnghttp2.so:www/libnghttp2 Error: /usr/local/lib/R/library/rgdal/libs/rgdal.so is linked to /usr/local/lib/libssl.so.11 from security/openssl but it is not declared as a dependency Warning: you need USES=ssl Error: /usr/local/lib/R/library/rgdal/libs/rgdal.so is linked to /usr/local/lib/libncurses.so.6 from devel/ncurses but it is not declared as a dependency Warning: you need USES+=ncurses Error: /usr/local/lib/R/library/rgdal/libs/rgdal.so is linked to /usr/local/lib/libtinfo.so.6 from devel/ncurses but it is not declared as a dependency Warning: you need USES+=ncurses Error: /usr/local/lib/R/library/rgdal/libs/rgdal.so is linked to /usr/local/lib/libicudata.so.68 from devel/icu but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libicudata.so:devel/icu Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:55 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- ====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for R-cran-rgdal-1.5.19 file sizes/checksums [117]: 0% file sizes/checksums [117]: 85% file sizes/checksums [117]: 100% packing files [117]: 0% packing files [117]: 85% packing files [117]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:05 TOTAL TIME 00:02:52