=> Building science/py-rmf@py37 Started : Saturday, 15 FEB 2020 at 16:59:03 UTC Platform: 5.7-DEVELOPMENT DragonFly v5.7.0.1432.g9cd86-DEVELOPMENT #23: Thu Feb 13 14:43:04 PST 2020 root@sting.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.7-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.7-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- PYTHON="/usr/local/bin/python3.7" XDG_DATA_HOME=/construction/science/py-rmf XDG_CONFIG_HOME=/construction/science/py-rmf HOME=/construction/science/py-rmf TMPDIR="/tmp" PATH=/construction/science/py-rmf/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- XDG_DATA_HOME=/construction/science/py-rmf XDG_CONFIG_HOME=/construction/science/py-rmf HOME=/construction/science/py-rmf TMPDIR="/tmp" PATH=/construction/science/py-rmf/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -lRMF " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/science/py-rmf/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- CMAKE_BUILD_TYPE="release" PYTHON_INCLUDEDIR=include/python3.7m PYTHON_LIBDIR=lib/python3.7 PYTHON_PLATFORM=dragonfly5 PYTHON_SITELIBDIR=lib/python3.7/site-packages PYTHON_SUFFIX=37 PYTHON_VER=3.7 PYTHON_VERSION=python3.7 PYTHON2="@comment " PYTHON3="" OSREL=5.7 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/rmf" EXAMPLESDIR="share/examples/rmf" DATADIR="share/rmf" WWWDIR="www/rmf" ETCDIR="etc/rmf" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/rmf DOCSDIR=/usr/local/share/doc/rmf EXAMPLESDIR=/usr/local/share/examples/rmf WWWDIR=/usr/local/www/rmf ETCDIR=/usr/local/etc/rmf -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=LiveSystem USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=15 DPORTS_BUILDER= yes DISABLE_LICENSES= yes DEFAULT_VERSIONS= ssl=openssl FORCE_PACKAGE= yes DEVELOPER= yes HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.30.1 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=32 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500709 OSVERSION=9999999 OSREL=5.7 _OSRELEASE=5.7-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> py37-rmf-1.1_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.12.0_1.txz Installing pkg-1.12.0_1... Extracting pkg-1.12.0_1: .......... done ===> py37-rmf-1.1_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py37-rmf-1.1_1 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- => salilab-rmf-1.1-f917cf2_GH0.tar.gz doesn't seem to exist in /distfiles/. => Attempting to fetch https://codeload.github.com/salilab/rmf/tar.gz/f917cf2?dummy=/salilab-rmf-1.1-f917cf2_GH0.tar.gz fetch: https://codeload.github.com/salilab/rmf/tar.gz/f917cf2?dummy=/salilab-rmf-1.1-f917cf2_GH0.tar.gz: size unknown fetch: https://codeload.github.com/salilab/rmf/tar.gz/f917cf2?dummy=/salilab-rmf-1.1-f917cf2_GH0.tar.gz: size of remote file is not known salilab-rmf-1.1-f917cf2_GH0.tar.gz 14 MB 3983 kBps 04s ===> Fetching all distfiles required by py37-rmf-1.1_1 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> Fetching all distfiles required by py37-rmf-1.1_1 for building => SHA256 Checksum OK for salilab-rmf-1.1-f917cf2_GH0.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> Fetching all distfiles required by py37-rmf-1.1_1 for building ===> Extracting for py37-rmf-1.1_1 => SHA256 Checksum OK for salilab-rmf-1.1-f917cf2_GH0.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for py37-rmf-1.1_1 ===> Applying ports patches for py37-rmf-1.1_1 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> py37-rmf-1.1_1 depends on executable: swig3.0 - not found ===> Installing existing package /packages/All/swig30-3.0.12.txz Installing swig30-3.0.12... `-- Installing lua52-5.2.4... | `-- Installing libedit-3.1.20191211,1... | | `-- Installing ncurses-6.1.20190525... | | `-- Extracting ncurses-6.1.20190525: .......... done | `-- Extracting libedit-3.1.20191211,1: .......... done `-- Extracting lua52-5.2.4: ......... done `-- Installing pcre-8.43_2... `-- Extracting pcre-8.43_2: .......... done Extracting swig30-3.0.12: .......... done ===> py37-rmf-1.1_1 depends on executable: swig3.0 - found ===> Returning to build of py37-rmf-1.1_1 ===> py37-rmf-1.1_1 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-3.16.4.txz Installing cmake-3.16.4... `-- Installing curl-7.68.0... | `-- Installing ca_root_nss-3.50... | `-- Extracting ca_root_nss-3.50: ..... done | `-- Installing libnghttp2-1.40.0... | `-- Extracting libnghttp2-1.40.0: ....... done | `-- Installing openssl-1.1.1d,1... | `-- Extracting openssl-1.1.1d,1: .......... done `-- Extracting curl-7.68.0: .......... done `-- Installing expat-2.2.8... `-- Extracting expat-2.2.8: .......... done `-- Installing jsoncpp-1.9.2... `-- Extracting jsoncpp-1.9.2: .......... done `-- Installing libarchive-3.4.0,1... | `-- Installing liblz4-1.9.2_1,1... | `-- Extracting liblz4-1.9.2_1,1: .......... done | `-- Installing lzo2-2.10_1... | `-- Extracting lzo2-2.10_1: .......... done `-- Extracting libarchive-3.4.0,1: .......... done `-- Installing libuv-1.34.2... `-- Extracting libuv-1.34.2: .......... done `-- Installing rhash-1.3.5... `-- Extracting rhash-1.3.5: .......... done Extracting cmake-3.16.4: .......... done ===== Message from ca_root_nss-3.50: -- FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem ===> py37-rmf-1.1_1 depends on file: /usr/local/bin/cmake - found ===> Returning to build of py37-rmf-1.1_1 ===> py37-rmf-1.1_1 depends on file: /usr/local/bin/python3.7 - not found ===> Installing existing package /packages/All/python37-3.7.6.txz Installing python37-3.7.6... `-- Installing gettext-runtime-0.20.1... | `-- Installing indexinfo-0.3.1... | `-- Extracting indexinfo-0.3.1: . done `-- Extracting gettext-runtime-0.20.1: .......... done `-- Installing libffi-3.2.1_3... `-- Extracting libffi-3.2.1_3: .......... done `-- Installing readline-8.0.1... `-- Extracting readline-8.0.1: .......... done Extracting python37-3.7.6: .......... done ===== Message from python37-3.7.6: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py37-gdbm databases/py-gdbm@py37 py37-sqlite3 databases/py-sqlite3@py37 py37-tkinter x11-toolkits/py-tkinter@py37 ===> py37-rmf-1.1_1 depends on file: /usr/local/bin/python3.7 - found ===> Returning to build of py37-rmf-1.1_1 -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- ===> py37-rmf-1.1_1 depends on shared library: libRMF.so - not found ===> Installing existing package /packages/All/rmf-1.1_8.txz Installing rmf-1.1_8... `-- Installing boost-libs-1.72.0... | `-- Installing icu-65.1,1... | `-- Extracting icu-65.1,1: .......... done `-- Extracting boost-libs-1.72.0: .......... done `-- Installing hdf-szip-2.1.1... `-- Extracting hdf-szip-2.1.1: ....... done `-- Installing hdf5-1.10.6... `-- Extracting hdf5-1.10.6: .......... done Extracting rmf-1.1_8: .......... done ===== Message from boost-libs-1.72.0: -- You have built the Boost library with thread support. Don't forget to add -pthread to your linker options when linking your code. ===> py37-rmf-1.1_1 depends on shared library: libRMF.so - found (/usr/local/lib/libRMF.so) ===> Returning to build of py37-rmf-1.1_1 -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for py37-rmf-1.1_1 ===> Performing out-of-source build /bin/mkdir -p /construction/science/py-rmf/.build -- The C compiler identification is GNU 8.3.0 -- The CXX compiler identification is GNU 8.3.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for pthread.h -- Looking for pthread.h - found -- Found Threads: TRUE -- Found Boost: /usr/local/include (found version "1.72.0") found components: system filesystem thread program_options iostreams chrono date_time atomic regex -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/local/lib/libhdf5.so;/usr/local/lib/libsz.so;/usr/lib/libz.so;/usr/lib/libdl.so;/usr/lib/libm.so (found version "1.10.6") -- Found HDF5: /usr/local/lib/libhdf5.so;/usr/local/lib/libsz.so;/usr/lib/libz.so;/usr/lib/libdl.so;/usr/lib/libm.so (found suitable version "1.10.6", minimum required is "1.8") -- Deprecated backends (and hdf5) are enabled -- GCC version: 8.3 -- Enabling g++ C++11 support -- GCC version: 8.3 -- No conversion issue -- Running Making RMF/HDF5.h -- Updating /construction/science/py-rmf/.build/include/RMF/HDF5.h -- Running Making RMF.h -- Updating /construction/science/py-rmf/.build/include/RMF.h -- Running setup_cmake.py -- Running Running setup_cmake.py -- Updating ./test/Files.cmake Updating ./examples/Files.cmake Updating ./tools/dev_tools/test/Files.cmake Updating ./benchmark/Files.cmake Updating ./bin/Files.cmake Updating ./src/Files.cmake -- Logging disabled -- Found SWIG: /usr/local/bin/swig3.0 (found suitable version "3.0.12", minimum required is "1.3.40") -- Python binary is /construction/science/py-rmf/.bin/python (version 3.7.6) -- Found PythonLibs: /usr/local/lib/libpython3.7m.so (found suitable exact version "3.7.6") CMake Warning (dev) at /usr/local/share/cmake/Modules/UseSWIG.cmake:607 (message): Policy CMP0078 is not set: UseSWIG generates standard target names. Run "cmake --help-policy CMP0078" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): swig/CMakeLists.txt:45 (SWIG_ADD_LIBRARY) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at /usr/local/share/cmake/Modules/UseSWIG.cmake:460 (message): Policy CMP0086 is not set: UseSWIG honors SWIG_MODULE_NAME via -module flag. Run "cmake --help-policy CMP0086" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): /usr/local/share/cmake/Modules/UseSWIG.cmake:702 (SWIG_ADD_SOURCE_TO_MODULE) swig/CMakeLists.txt:45 (SWIG_ADD_LIBRARY) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at /usr/local/share/cmake/Modules/UseSWIG.cmake:607 (message): Policy CMP0078 is not set: UseSWIG generates standard target names. Run "cmake --help-policy CMP0078" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): swig/CMakeLists.txt:84 (SWIG_ADD_LIBRARY) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at /usr/local/share/cmake/Modules/UseSWIG.cmake:460 (message): Policy CMP0086 is not set: UseSWIG honors SWIG_MODULE_NAME via -module flag. Run "cmake --help-policy CMP0086" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): /usr/local/share/cmake/Modules/UseSWIG.cmake:702 (SWIG_ADD_SOURCE_TO_MODULE) swig/CMakeLists.txt:84 (SWIG_ADD_LIBRARY) This warning is for project developers. Use -Wno-dev to suppress it. -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_CXX_FLAGS_DEBUG CMAKE_C_FLAGS_DEBUG CMAKE_C_FLAGS_RELEASE CMAKE_EXE_LINKER_FLAGS CMAKE_SHARED_LINKER_FLAGS -- Build files have been written to: /construction/science/py-rmf/.build -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for py37-rmf-1.1_1 /usr/local/bin/cmake -S/construction/science/py-rmf/rmf-f917cf2 -B/construction/science/py-rmf/.build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/local/bin/cmake -E cmake_progress_start /construction/science/py-rmf/.build/CMakeFiles /construction/science/py-rmf/.build/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all --- include/CMakeFiles/RMF-decorators.dir/all --- --- swig/CMakeFiles/RMF_HDF5_swig_compilation.dir/all --- --- include/CMakeFiles/RMF-decorators.dir/all --- /usr/bin/make -f include/CMakeFiles/RMF-decorators.dir/build.make include/CMakeFiles/RMF-decorators.dir/depend --- swig/CMakeFiles/RMF_HDF5_swig_compilation.dir/all --- /usr/bin/make -f swig/CMakeFiles/RMF_HDF5_swig_compilation.dir/build.make swig/CMakeFiles/RMF_HDF5_swig_compilation.dir/depend --- include/CMakeFiles/RMF-decorators.dir/all --- --- include/CMakeFiles/RMF-decorators.dir/depend --- --- swig/CMakeFiles/RMF_HDF5_swig_compilation.dir/all --- --- swig/CMakeFiles/RMF_HDF5_swig_compilation.dir/depend --- --- include/CMakeFiles/RMF-decorators.dir/all --- cd /construction/science/py-rmf/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/py-rmf/rmf-f917cf2 /construction/science/py-rmf/rmf-f917cf2/include /construction/science/py-rmf/.build /construction/science/py-rmf/.build/include /construction/science/py-rmf/.build/include/CMakeFiles/RMF-decorators.dir/DependInfo.cmake --- swig/CMakeFiles/RMF_HDF5_swig_compilation.dir/all --- cd /construction/science/py-rmf/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/py-rmf/rmf-f917cf2 /construction/science/py-rmf/rmf-f917cf2/swig /construction/science/py-rmf/.build /construction/science/py-rmf/.build/swig /construction/science/py-rmf/.build/swig/CMakeFiles/RMF_HDF5_swig_compilation.dir/DependInfo.cmake --- include/CMakeFiles/RMF-decorators.dir/all --- Scanning dependencies of target RMF-decorators /usr/bin/make -f include/CMakeFiles/RMF-decorators.dir/build.make include/CMakeFiles/RMF-decorators.dir/build --- include/RMF/decorator/physics.h --- [ 14%] Making decorator headers python /construction/science/py-rmf/rmf-f917cf2/tools/build/make_decorators.py --- swig/CMakeFiles/RMF_HDF5_swig_compilation.dir/all --- Scanning dependencies of target RMF_HDF5_swig_compilation /usr/bin/make -f swig/CMakeFiles/RMF_HDF5_swig_compilation.dir/build.make swig/CMakeFiles/RMF_HDF5_swig_compilation.dir/build --- swig/CMakeFiles/_RMF_HDF5.dir/RMF_HDF5PYTHON.stamp --- [ 28%] Swig compile RMF_HDF5.i for python cd /construction/science/py-rmf/.build/swig && /usr/local/bin/cmake -E make_directory /construction/science/py-rmf/.build/lib /construction/science/py-rmf/.build/lib cd /construction/science/py-rmf/.build/swig && /usr/local/bin/cmake -E touch /construction/science/py-rmf/.build/swig/CMakeFiles/_RMF_HDF5.dir/RMF_HDF5PYTHON.stamp cd /construction/science/py-rmf/.build/swig && /usr/local/bin/cmake -E env SWIG_LIB=/usr/local/share/swig/3.0.12 /usr/local/bin/swig3.0 -python -castmode -naturalvar -Wextra -fvirtual -DPySwigIterator=RMF_HDF5_PySwigIterator -c++ -DSwigPyIterator=RMF_HDF5_SwigPyIterator -DRMFEXPORT -outdir /construction/science/py-rmf/.build/lib -c++ -interface _RMF_HDF5 -I/construction/science/py-rmf/rmf-f917cf2/swig -I/construction/science/py-rmf/rmf-f917cf2/include -I/construction/science/py-rmf/.build/include -I/usr/local/include -I/usr/local/include/python3.7m -o /construction/science/py-rmf/.build/lib/RMF_HDF5PYTHON_wrap.cxx /construction/science/py-rmf/rmf-f917cf2/swig/RMF_HDF5.i --- include/CMakeFiles/RMF-decorators.dir/all --- [ 28%] Built target RMF-decorators --- swig/CMakeFiles/RMF_swig_compilation.dir/all --- /usr/bin/make -f swig/CMakeFiles/RMF_swig_compilation.dir/build.make swig/CMakeFiles/RMF_swig_compilation.dir/depend --- swig/CMakeFiles/RMF_swig_compilation.dir/depend --- cd /construction/science/py-rmf/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/py-rmf/rmf-f917cf2 /construction/science/py-rmf/rmf-f917cf2/swig /construction/science/py-rmf/.build /construction/science/py-rmf/.build/swig /construction/science/py-rmf/.build/swig/CMakeFiles/RMF_swig_compilation.dir/DependInfo.cmake Scanning dependencies of target RMF_swig_compilation /usr/bin/make -f swig/CMakeFiles/RMF_swig_compilation.dir/build.make swig/CMakeFiles/RMF_swig_compilation.dir/build --- swig/CMakeFiles/_RMF.dir/RMFPYTHON.stamp --- [ 42%] Swig compile RMF.i for python cd /construction/science/py-rmf/.build/swig && /usr/local/bin/cmake -E make_directory /construction/science/py-rmf/.build/lib /construction/science/py-rmf/.build/lib cd /construction/science/py-rmf/.build/swig && /usr/local/bin/cmake -E touch /construction/science/py-rmf/.build/swig/CMakeFiles/_RMF.dir/RMFPYTHON.stamp cd /construction/science/py-rmf/.build/swig && /usr/local/bin/cmake -E env SWIG_LIB=/usr/local/share/swig/3.0.12 /usr/local/bin/swig3.0 -python -castmode -naturalvar -Wextra -fvirtual -DPySwigIterator=RMF_PySwigIterator -c++ -DSwigPyIterator=RMF_SwigPyIterator -DRMFEXPORT -outdir /construction/science/py-rmf/.build/lib -c++ -interface _RMF -I/construction/science/py-rmf/rmf-f917cf2/swig -I/construction/science/py-rmf/rmf-f917cf2/include -I/construction/science/py-rmf/.build/include -I/usr/local/include -I/usr/local/include/python3.7m -o /construction/science/py-rmf/.build/lib/RMFPYTHON_wrap.cxx /construction/science/py-rmf/rmf-f917cf2/swig/RMF.i --- swig/CMakeFiles/RMF_HDF5_swig_compilation.dir/all --- [ 42%] Built target RMF_HDF5_swig_compilation --- swig/CMakeFiles/_RMF_HDF5.dir/all --- /usr/bin/make -f swig/CMakeFiles/_RMF_HDF5.dir/build.make swig/CMakeFiles/_RMF_HDF5.dir/depend --- swig/CMakeFiles/_RMF_HDF5.dir/depend --- cd /construction/science/py-rmf/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/py-rmf/rmf-f917cf2 /construction/science/py-rmf/rmf-f917cf2/swig /construction/science/py-rmf/.build /construction/science/py-rmf/.build/swig /construction/science/py-rmf/.build/swig/CMakeFiles/_RMF_HDF5.dir/DependInfo.cmake Scanning dependencies of target _RMF_HDF5 /usr/bin/make -f swig/CMakeFiles/_RMF_HDF5.dir/build.make swig/CMakeFiles/_RMF_HDF5.dir/build --- swig/CMakeFiles/_RMF_HDF5.dir/__/lib/RMF_HDF5PYTHON_wrap.cxx.o --- [ 57%] Building CXX object swig/CMakeFiles/_RMF_HDF5.dir/__/lib/RMF_HDF5PYTHON_wrap.cxx.o cd /construction/science/py-rmf/.build/swig && /usr/bin/c++ -DRMF_SWIG_WRAPPER -D_RMF_HDF5_EXPORTS -I/construction/science/py-rmf/rmf-f917cf2/swig -I/construction/science/py-rmf/rmf-f917cf2/include -I/construction/science/py-rmf/.build/include -I/usr/local/include -I/usr/local/include/python3.7m -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC --std=c++11 -o CMakeFiles/_RMF_HDF5.dir/__/lib/RMF_HDF5PYTHON_wrap.cxx.o -c /construction/science/py-rmf/.build/lib/RMF_HDF5PYTHON_wrap.cxx --- swig/CMakeFiles/RMF_swig_compilation.dir/all --- /construction/science/py-rmf/rmf-f917cf2/include/RMF/BufferConstHandle.h:48: Warning 467: Overloaded method RMF::BufferConstHandle::BufferConstHandle(std::vector< char,std::allocator< char > > const &) not supported (incomplete type checking rule - no precedence level in typecheck typemap for 'std::vector< char,std::allocator< char > > const &'). [ 57%] Built target RMF_swig_compilation --- swig/CMakeFiles/_RMF.dir/all --- /usr/bin/make -f swig/CMakeFiles/_RMF.dir/build.make swig/CMakeFiles/_RMF.dir/depend --- swig/CMakeFiles/_RMF.dir/depend --- cd /construction/science/py-rmf/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/py-rmf/rmf-f917cf2 /construction/science/py-rmf/rmf-f917cf2/swig /construction/science/py-rmf/.build /construction/science/py-rmf/.build/swig /construction/science/py-rmf/.build/swig/CMakeFiles/_RMF.dir/DependInfo.cmake Scanning dependencies of target _RMF /usr/bin/make -f swig/CMakeFiles/_RMF.dir/build.make swig/CMakeFiles/_RMF.dir/build --- swig/CMakeFiles/_RMF.dir/__/lib/RMFPYTHON_wrap.cxx.o --- [ 71%] Building CXX object swig/CMakeFiles/_RMF.dir/__/lib/RMFPYTHON_wrap.cxx.o cd /construction/science/py-rmf/.build/swig && /usr/bin/c++ -DRMF_SWIG_WRAPPER -D_RMF_EXPORTS -I/construction/science/py-rmf/rmf-f917cf2/swig -I/construction/science/py-rmf/rmf-f917cf2/include -I/construction/science/py-rmf/.build/include -I/usr/local/include -I/usr/local/include/python3.7m -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC --std=c++11 -o CMakeFiles/_RMF.dir/__/lib/RMFPYTHON_wrap.cxx.o -c /construction/science/py-rmf/.build/lib/RMFPYTHON_wrap.cxx --- swig/CMakeFiles/_RMF_HDF5.dir/all --- /construction/science/py-rmf/.build/lib/RMF_HDF5PYTHON_wrap.cxx: In function 'void SWIG_Python_addvarlink(PyObject*, char*, PyObject* (*)(), int (*)(PyObject*))': /construction/science/py-rmf/.build/lib/RMF_HDF5PYTHON_wrap.cxx:89319:16: warning: 'char* strncpy(char*, const char*, size_t)' specified bound depends on the length of the source argument [-Wstringop-overflow=] strncpy(gv->name,name,size); ~~~~~~~^~~~~~~~~~~~~~~~~~~~ /construction/science/py-rmf/.build/lib/RMF_HDF5PYTHON_wrap.cxx:89316:27: note: length computed here size_t size = strlen(name)+1; ~~~~~~^~~~~~ --- swig/CMakeFiles/_RMF.dir/all --- /construction/science/py-rmf/.build/lib/RMFPYTHON_wrap.cxx: In function 'void SWIG_Python_addvarlink(PyObject*, char*, PyObject* (*)(), int (*)(PyObject*))': /construction/science/py-rmf/.build/lib/RMFPYTHON_wrap.cxx:169725:16: warning: 'char* strncpy(char*, const char*, size_t)' specified bound depends on the length of the source argument [-Wstringop-overflow=] strncpy(gv->name,name,size); ~~~~~~~^~~~~~~~~~~~~~~~~~~~ /construction/science/py-rmf/.build/lib/RMFPYTHON_wrap.cxx:169722:27: note: length computed here size_t size = strlen(name)+1; ~~~~~~^~~~~~ --- swig/CMakeFiles/_RMF_HDF5.dir/all --- --- lib/_RMF_HDF5.so --- [ 85%] Linking CXX shared module ../lib/_RMF_HDF5.so cd /construction/science/py-rmf/.build/swig && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/_RMF_HDF5.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -lRMF -shared -o ../lib/_RMF_HDF5.so CMakeFiles/_RMF_HDF5.dir/__/lib/RMF_HDF5PYTHON_wrap.cxx.o -L/usr/local/lib [ 85%] Built target _RMF_HDF5 --- swig/CMakeFiles/_RMF.dir/all --- --- lib/_RMF.so --- [100%] Linking CXX shared module ../lib/_RMF.so cd /construction/science/py-rmf/.build/swig && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/_RMF.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -lRMF -shared -o ../lib/_RMF.so CMakeFiles/_RMF.dir/__/lib/RMFPYTHON_wrap.cxx.o -L/usr/local/lib [100%] Built target _RMF /usr/local/bin/cmake -E cmake_progress_start /construction/science/py-rmf/.build/CMakeFiles 0 -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- ===> py37-rmf-1.1_1 depends on file: /usr/local/bin/python3.7 - found -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for py37-rmf-1.1_1 ===> Generating temporary packing list /usr/local/bin/cmake -S/construction/science/py-rmf/rmf-f917cf2 -B/construction/science/py-rmf/.build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/local/bin/cmake -E cmake_progress_start /construction/science/py-rmf/.build/CMakeFiles /construction/science/py-rmf/.build/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f include/CMakeFiles/RMF-decorators.dir/build.make include/CMakeFiles/RMF-decorators.dir/depend cd /construction/science/py-rmf/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/py-rmf/rmf-f917cf2 /construction/science/py-rmf/rmf-f917cf2/include /construction/science/py-rmf/.build /construction/science/py-rmf/.build/include /construction/science/py-rmf/.build/include/CMakeFiles/RMF-decorators.dir/DependInfo.cmake /usr/bin/make -f include/CMakeFiles/RMF-decorators.dir/build.make include/CMakeFiles/RMF-decorators.dir/build [ 14%] Built target RMF-decorators /usr/bin/make -f swig/CMakeFiles/RMF_swig_compilation.dir/build.make swig/CMakeFiles/RMF_swig_compilation.dir/depend cd /construction/science/py-rmf/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/py-rmf/rmf-f917cf2 /construction/science/py-rmf/rmf-f917cf2/swig /construction/science/py-rmf/.build /construction/science/py-rmf/.build/swig /construction/science/py-rmf/.build/swig/CMakeFiles/RMF_swig_compilation.dir/DependInfo.cmake /usr/bin/make -f swig/CMakeFiles/RMF_swig_compilation.dir/build.make swig/CMakeFiles/RMF_swig_compilation.dir/build [ 28%] Built target RMF_swig_compilation /usr/bin/make -f swig/CMakeFiles/_RMF.dir/build.make swig/CMakeFiles/_RMF.dir/depend cd /construction/science/py-rmf/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/py-rmf/rmf-f917cf2 /construction/science/py-rmf/rmf-f917cf2/swig /construction/science/py-rmf/.build /construction/science/py-rmf/.build/swig /construction/science/py-rmf/.build/swig/CMakeFiles/_RMF.dir/DependInfo.cmake /usr/bin/make -f swig/CMakeFiles/_RMF.dir/build.make swig/CMakeFiles/_RMF.dir/build [ 57%] Built target _RMF /usr/bin/make -f swig/CMakeFiles/RMF_HDF5_swig_compilation.dir/build.make swig/CMakeFiles/RMF_HDF5_swig_compilation.dir/depend cd /construction/science/py-rmf/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/py-rmf/rmf-f917cf2 /construction/science/py-rmf/rmf-f917cf2/swig /construction/science/py-rmf/.build /construction/science/py-rmf/.build/swig /construction/science/py-rmf/.build/swig/CMakeFiles/RMF_HDF5_swig_compilation.dir/DependInfo.cmake /usr/bin/make -f swig/CMakeFiles/RMF_HDF5_swig_compilation.dir/build.make swig/CMakeFiles/RMF_HDF5_swig_compilation.dir/build [ 71%] Built target RMF_HDF5_swig_compilation /usr/bin/make -f swig/CMakeFiles/_RMF_HDF5.dir/build.make swig/CMakeFiles/_RMF_HDF5.dir/depend cd /construction/science/py-rmf/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/py-rmf/rmf-f917cf2 /construction/science/py-rmf/rmf-f917cf2/swig /construction/science/py-rmf/.build /construction/science/py-rmf/.build/swig /construction/science/py-rmf/.build/swig/CMakeFiles/_RMF_HDF5.dir/DependInfo.cmake /usr/bin/make -f swig/CMakeFiles/_RMF_HDF5.dir/build.make swig/CMakeFiles/_RMF_HDF5.dir/build [100%] Built target _RMF_HDF5 /usr/local/bin/cmake -E cmake_progress_start /construction/science/py-rmf/.build/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall Installing the project stripped... /usr/local/bin/cmake -DCMAKE_INSTALL_DO_STRIP=1 -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /construction/science/py-rmf/stage/usr/local/lib/python3.7/site-packages/_RMF.so -- Installing: /construction/science/py-rmf/stage/usr/local/lib/python3.7/site-packages/RMF.py -- Installing: /construction/science/py-rmf/stage/usr/local/lib/python3.7/site-packages/_RMF_HDF5.so -- Installing: /construction/science/py-rmf/stage/usr/local/lib/python3.7/site-packages/RMF_HDF5.py ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Error: /usr/local/lib/python3.7/site-packages/_RMF.so is linked to /usr/local/lib/libboost_filesystem.so.1.72.0 from devel/boost-libs but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libboost_filesystem.so:devel/boost-libs Error: /usr/local/lib/python3.7/site-packages/_RMF.so is linked to /usr/local/lib/libboost_system.so.1.72.0 from devel/boost-libs but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libboost_system.so:devel/boost-libs Error: /usr/local/lib/python3.7/site-packages/_RMF.so is linked to /usr/local/lib/libboost_thread.so.1.72.0 from devel/boost-libs but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libboost_thread.so:devel/boost-libs Error: /usr/local/lib/python3.7/site-packages/_RMF.so is linked to /usr/local/lib/libboost_iostreams.so.1.72.0 from devel/boost-libs but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libboost_iostreams.so:devel/boost-libs Error: /usr/local/lib/python3.7/site-packages/_RMF.so is linked to /usr/local/lib/libhdf5.so.103 from science/hdf5 but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libhdf5.so:science/hdf5 Error: /usr/local/lib/python3.7/site-packages/_RMF.so is linked to /usr/local/lib/libsz.so.2 from science/szip but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libsz.so:science/szip Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for py37-rmf-1.1_1 file sizes/checksums [4]: . done packing files [4]: . done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Saturday, 15 FEB 2020 at 17:10:54 UTC Duration: 00:11:50