=> Building science/py-qcelemental@py37 Started : Saturday, 15 FEB 2020 at 10:30:17 UTC Platform: 5.7-DEVELOPMENT DragonFly v5.7.0.1432.g9cd86-DEVELOPMENT #23: Thu Feb 13 14:43:04 PST 2020 root@sting.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.7-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.7-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- PYTHON="/usr/local/bin/python3.7" XDG_DATA_HOME=/construction/science/py-qcelemental XDG_CONFIG_HOME=/construction/science/py-qcelemental HOME=/construction/science/py-qcelemental TMPDIR="/tmp" PATH=/construction/science/py-qcelemental/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- XDG_DATA_HOME=/construction/science/py-qcelemental XDG_CONFIG_HOME=/construction/science/py-qcelemental HOME=/construction/science/py-qcelemental TMPDIR="/tmp" PATH=/construction/science/py-qcelemental/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/science/py-qcelemental/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- PYTHON_INCLUDEDIR=include/python3.7m PYTHON_LIBDIR=lib/python3.7 PYTHON_PLATFORM=dragonfly5 PYTHON_SITELIBDIR=lib/python3.7/site-packages PYTHON_SUFFIX=37 PYTHON_VER=3.7 PYTHON_VERSION=python3.7 PYTHON2="@comment " PYTHON3="" OSREL=5.7 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/qcelemental" EXAMPLESDIR="share/examples/qcelemental" DATADIR="share/qcelemental" WWWDIR="www/qcelemental" ETCDIR="etc/qcelemental" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/qcelemental DOCSDIR=/usr/local/share/doc/qcelemental EXAMPLESDIR=/usr/local/share/examples/qcelemental WWWDIR=/usr/local/www/qcelemental ETCDIR=/usr/local/etc/qcelemental -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=LiveSystem USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=15 DPORTS_BUILDER= yes DISABLE_LICENSES= yes DEFAULT_VERSIONS= ssl=openssl FORCE_PACKAGE= yes DEVELOPER= yes HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.30.1 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=32 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500709 OSVERSION=9999999 OSREL=5.7 _OSRELEASE=5.7-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> py37-qcelemental-0.12.0 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.12.0_1.txz Installing pkg-1.12.0_1... Extracting pkg-1.12.0_1: .......... done ===> py37-qcelemental-0.12.0 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py37-qcelemental-0.12.0 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- => qcelemental-0.12.0.tar.gz doesn't seem to exist in /distfiles/. => Attempting to fetch https://files.pythonhosted.org/packages/source/q/qcelemental/qcelemental-0.12.0.tar.gz qcelemental-0.12.0.tar.gz 204 kB 18 MBps 00s ===> Fetching all distfiles required by py37-qcelemental-0.12.0 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> Fetching all distfiles required by py37-qcelemental-0.12.0 for building => SHA256 Checksum OK for qcelemental-0.12.0.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> Fetching all distfiles required by py37-qcelemental-0.12.0 for building ===> Extracting for py37-qcelemental-0.12.0 => SHA256 Checksum OK for qcelemental-0.12.0.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for py37-qcelemental-0.12.0 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> py37-qcelemental-0.12.0 depends on package: py37-setuptools>0 - not found ===> Installing existing package /packages/All/py37-setuptools-44.0.0.txz Installing py37-setuptools-44.0.0... `-- Installing python37-3.7.6... | `-- Installing expat-2.2.8... | `-- Extracting expat-2.2.8: .......... done | `-- Installing gettext-runtime-0.20.1... | | `-- Installing indexinfo-0.3.1... | | `-- Extracting indexinfo-0.3.1: . done | `-- Extracting gettext-runtime-0.20.1: .......... done | `-- Installing libffi-3.2.1_3... | `-- Extracting libffi-3.2.1_3: .......... done | `-- Installing ncurses-6.1.20190525... | `-- Extracting ncurses-6.1.20190525: .......... done | `-- Installing openssl-1.1.1d,1... | `-- Extracting openssl-1.1.1d,1: .......... done | `-- Installing readline-8.0.1... | `-- Extracting readline-8.0.1: .......... done `-- Extracting python37-3.7.6: .......... done Extracting py37-setuptools-44.0.0: .......... done ===== Message from python37-3.7.6: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py37-gdbm databases/py-gdbm@py37 py37-sqlite3 databases/py-sqlite3@py37 py37-tkinter x11-toolkits/py-tkinter@py37 ===> py37-qcelemental-0.12.0 depends on package: py37-setuptools>0 - found ===> Returning to build of py37-qcelemental-0.12.0 ===> py37-qcelemental-0.12.0 depends on file: /usr/local/bin/python3.7 - found -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for py37-qcelemental-0.12.0 running config /usr/local/lib/python3.7/site-packages/setuptools/dist.py:476: UserWarning: Normalizing 'v0.12.0' to '0.12.0' normalized_version, -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for py37-qcelemental-0.12.0 running build running build_py creating build creating build/lib creating build/lib/qcelemental copying qcelemental/_version.py -> build/lib/qcelemental copying qcelemental/covalent_radii.py -> build/lib/qcelemental copying qcelemental/vanderwaals_radii.py -> build/lib/qcelemental copying qcelemental/datum.py -> build/lib/qcelemental copying qcelemental/exceptions.py -> build/lib/qcelemental copying qcelemental/testing.py -> build/lib/qcelemental copying qcelemental/extras.py -> build/lib/qcelemental copying qcelemental/__init__.py -> build/lib/qcelemental copying qcelemental/periodic_table.py -> build/lib/qcelemental creating build/lib/qcelemental/molparse copying qcelemental/molparse/from_string.py -> build/lib/qcelemental/molparse copying qcelemental/molparse/regex.py -> build/lib/qcelemental/molparse copying qcelemental/molparse/from_arrays.py -> build/lib/qcelemental/molparse copying qcelemental/molparse/to_string.py -> build/lib/qcelemental/molparse copying qcelemental/molparse/from_schema.py -> build/lib/qcelemental/molparse copying qcelemental/molparse/nucleus.py -> build/lib/qcelemental/molparse copying qcelemental/molparse/__init__.py -> build/lib/qcelemental/molparse copying qcelemental/molparse/pubchem.py -> build/lib/qcelemental/molparse copying qcelemental/molparse/to_schema.py -> build/lib/qcelemental/molparse copying qcelemental/molparse/chgmult.py -> build/lib/qcelemental/molparse creating build/lib/qcelemental/physical_constants copying qcelemental/physical_constants/context.py -> build/lib/qcelemental/physical_constants copying qcelemental/physical_constants/__init__.py -> build/lib/qcelemental/physical_constants copying qcelemental/physical_constants/ureg.py -> build/lib/qcelemental/physical_constants creating build/lib/qcelemental/molutil copying qcelemental/molutil/connectivity.py -> build/lib/qcelemental/molutil copying qcelemental/molutil/__init__.py -> build/lib/qcelemental/molutil copying qcelemental/molutil/align.py -> build/lib/qcelemental/molutil copying qcelemental/molutil/test_molutil.py -> build/lib/qcelemental/molutil creating build/lib/qcelemental/data copying qcelemental/data/alvarez_2008_covalent_radii.py -> build/lib/qcelemental/data copying qcelemental/data/__init__.py -> build/lib/qcelemental/data copying qcelemental/data/nist_2011_atomic_weights.py -> build/lib/qcelemental/data copying qcelemental/data/nist_2014_codata.py -> build/lib/qcelemental/data copying qcelemental/data/mantina_2009_vanderwaals_radii.py -> build/lib/qcelemental/data creating build/lib/qcelemental/util copying qcelemental/util/autodocs.py -> build/lib/qcelemental/util copying qcelemental/util/internal.py -> build/lib/qcelemental/util copying qcelemental/util/misc.py -> build/lib/qcelemental/util copying qcelemental/util/np_rand3drot.py -> build/lib/qcelemental/util copying qcelemental/util/serialization.py -> build/lib/qcelemental/util copying qcelemental/util/scipy_hungarian.py -> build/lib/qcelemental/util copying qcelemental/util/itertools.py -> build/lib/qcelemental/util copying qcelemental/util/gph_uno_bipartite.py -> build/lib/qcelemental/util copying qcelemental/util/test_gph_uno_bipartite.py -> build/lib/qcelemental/util copying qcelemental/util/test_scipy_hungarian.py -> build/lib/qcelemental/util copying qcelemental/util/importing.py -> build/lib/qcelemental/util copying qcelemental/util/np_blockwise.py -> build/lib/qcelemental/util copying qcelemental/util/__init__.py -> build/lib/qcelemental/util creating build/lib/qcelemental/tests copying qcelemental/tests/test_molparse_parse_nucleus_label.py -> build/lib/qcelemental/tests copying qcelemental/tests/test_units.py -> build/lib/qcelemental/tests copying qcelemental/tests/test_molparse_pubchem.py -> build/lib/qcelemental/tests copying qcelemental/tests/test_molparse_align_chiral.py -> build/lib/qcelemental/tests copying qcelemental/tests/test_model_results.py -> build/lib/qcelemental/tests copying qcelemental/tests/test_molparse_to_schema.py -> build/lib/qcelemental/tests copying qcelemental/tests/test_constants.py -> build/lib/qcelemental/tests copying qcelemental/tests/test_testing.py -> build/lib/qcelemental/tests copying qcelemental/tests/test_covalentradii.py -> build/lib/qcelemental/tests copying qcelemental/tests/test_molecule.py -> build/lib/qcelemental/tests copying qcelemental/tests/test_molparse_from_string.py -> build/lib/qcelemental/tests copying qcelemental/tests/test_model_general.py -> build/lib/qcelemental/tests copying qcelemental/tests/test_molparse_to_string.py -> build/lib/qcelemental/tests copying qcelemental/tests/__init__.py -> build/lib/qcelemental/tests copying qcelemental/tests/test_molparse_reconcile_nucleus.py -> build/lib/qcelemental/tests copying qcelemental/tests/test_periodictable.py -> build/lib/qcelemental/tests copying qcelemental/tests/test_datum.py -> build/lib/qcelemental/tests copying qcelemental/tests/test_molparse_validate_and_fill_chgmult.py -> build/lib/qcelemental/tests copying qcelemental/tests/addons.py -> build/lib/qcelemental/tests copying qcelemental/tests/test_utils.py -> build/lib/qcelemental/tests copying qcelemental/tests/test_importing.py -> build/lib/qcelemental/tests copying qcelemental/tests/test_molparse_from_schema.py -> build/lib/qcelemental/tests copying qcelemental/tests/test_vanderwaalsradii.py -> build/lib/qcelemental/tests creating build/lib/qcelemental/models copying qcelemental/models/results.py -> build/lib/qcelemental/models copying qcelemental/models/__init__.py -> build/lib/qcelemental/models copying qcelemental/models/types.py -> build/lib/qcelemental/models copying qcelemental/models/align.py -> build/lib/qcelemental/models copying qcelemental/models/molecule.py -> build/lib/qcelemental/models copying qcelemental/models/procedures.py -> build/lib/qcelemental/models copying qcelemental/models/basis.py -> build/lib/qcelemental/models copying qcelemental/models/basemodels.py -> build/lib/qcelemental/models copying qcelemental/models/common_models.py -> build/lib/qcelemental/models running egg_info writing qcelemental.egg-info/PKG-INFO writing dependency_links to qcelemental.egg-info/dependency_links.txt writing requirements to qcelemental.egg-info/requires.txt writing top-level names to qcelemental.egg-info/top_level.txt reading manifest file 'qcelemental.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' /usr/local/lib/python3.7/site-packages/setuptools/dist.py:476: UserWarning: Normalizing 'v0.12.0' to '0.12.0' normalized_version, warning: no files found matching '*.json' under directory 'qcelemental' warning: no previously-included files matching '*.py' found under directory 'qcelemental/checkup_data' warning: no previously-included files matching '*.md' found under directory 'qcelemental/checkup_data' writing manifest file 'qcelemental.egg-info/SOURCES.txt' copying qcelemental/data/README.md -> build/lib/qcelemental/data UPDATING build/lib/qcelemental/_version.py set build/lib/qcelemental/_version.py to 'v0.12.0' -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- ===> py37-qcelemental-0.12.0 depends on package: py37-numpy>=1.15,1<1.19,1 - not found ===> Installing existing package /packages/All/py37-numpy-1.16.5_4,1.txz Installing py37-numpy-1.16.5_4,1... `-- Installing gcc8-8.3.0_3... | `-- Installing binutils-2.33.1_2,1... | `-- Extracting binutils-2.33.1_2,1: .......... done | `-- Installing gmp-6.1.2_1... | `-- Extracting gmp-6.1.2_1: .......... done | `-- Installing mpc-1.1.0_2... | | `-- Installing mpfr-4.0.2... | | `-- Extracting mpfr-4.0.2: .......... done | `-- Extracting mpc-1.1.0_2: ...... done `-- Extracting gcc8-8.3.0_3: .......... done `-- Installing openblas-0.3.7_2,1... `-- Extracting openblas-0.3.7_2,1: .......... done `-- Installing suitesparse-5.4.0_5... | `-- Installing metis-5.1.0_8... | `-- Extracting metis-5.1.0_8: .......... done | `-- Installing tbb-2020.1... | `-- Extracting tbb-2020.1: .......... done `-- Extracting suitesparse-5.4.0_5: .......... done Extracting py37-numpy-1.16.5_4,1: .......... done ===== Message from gcc8-8.3.0_3: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> py37-qcelemental-0.12.0 depends on package: py37-numpy>=1.15,1<1.19,1 - found ===> Returning to build of py37-qcelemental-0.12.0 ===> py37-qcelemental-0.12.0 depends on package: py37-Pint>0 - not found ===> Installing existing package /packages/All/py37-Pint-0.8.1.txz Installing py37-Pint-0.8.1... Extracting py37-Pint-0.8.1: .......... done ===> py37-qcelemental-0.12.0 depends on package: py37-Pint>0 - found ===> Returning to build of py37-qcelemental-0.12.0 ===> py37-qcelemental-0.12.0 depends on package: py37-pydantic>=1.0.0 - not found ===> Installing existing package /packages/All/py37-pydantic-1.4.txz Installing py37-pydantic-1.4... Extracting py37-pydantic-1.4: .......... done ===> py37-qcelemental-0.12.0 depends on package: py37-pydantic>=1.0.0 - found ===> Returning to build of py37-qcelemental-0.12.0 ===> py37-qcelemental-0.12.0 depends on package: py37-setuptools>0 - found ===> py37-qcelemental-0.12.0 depends on file: /usr/local/bin/python3.7 - found -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for py37-qcelemental-0.12.0 ===> Generating temporary packing list running install running build running build_py running egg_info writing qcelemental.egg-info/PKG-INFO writing dependency_links to qcelemental.egg-info/dependency_links.txt writing requirements to qcelemental.egg-info/requires.txt writing top-level names to qcelemental.egg-info/top_level.txt reading manifest file 'qcelemental.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' /usr/local/lib/python3.7/site-packages/setuptools/dist.py:476: UserWarning: Normalizing 'v0.12.0' to '0.12.0' normalized_version, warning: no files found matching '*.json' under directory 'qcelemental' warning: no previously-included files matching '*.py' found under directory 'qcelemental/checkup_data' warning: no previously-included files matching '*.md' found under directory 'qcelemental/checkup_data' writing manifest file 'qcelemental.egg-info/SOURCES.txt' UPDATING build/lib/qcelemental/_version.py set build/lib/qcelemental/_version.py to 'v0.12.0' running install_lib creating /construction/science/py-qcelemental/stage/usr/local/lib/python3.7 creating /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages creating /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental creating /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/util copying build/lib/qcelemental/util/np_blockwise.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/util copying build/lib/qcelemental/util/importing.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/util copying build/lib/qcelemental/util/serialization.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/util copying build/lib/qcelemental/util/__init__.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/util copying build/lib/qcelemental/util/misc.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/util copying build/lib/qcelemental/util/test_scipy_hungarian.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/util copying build/lib/qcelemental/util/np_rand3drot.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/util copying build/lib/qcelemental/util/scipy_hungarian.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/util copying build/lib/qcelemental/util/internal.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/util copying build/lib/qcelemental/util/gph_uno_bipartite.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/util copying build/lib/qcelemental/util/test_gph_uno_bipartite.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/util copying build/lib/qcelemental/util/autodocs.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/util copying build/lib/qcelemental/util/itertools.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/util copying build/lib/qcelemental/testing.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental copying build/lib/qcelemental/vanderwaals_radii.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental copying build/lib/qcelemental/exceptions.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental creating /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/tests copying build/lib/qcelemental/tests/test_molparse_align_chiral.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/tests copying build/lib/qcelemental/tests/test_utils.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/tests copying build/lib/qcelemental/tests/test_molparse_validate_and_fill_chgmult.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/tests copying build/lib/qcelemental/tests/test_molparse_from_string.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/tests copying build/lib/qcelemental/tests/test_molparse_reconcile_nucleus.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/tests copying build/lib/qcelemental/tests/addons.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/tests copying build/lib/qcelemental/tests/test_model_results.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/tests copying build/lib/qcelemental/tests/test_datum.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/tests copying build/lib/qcelemental/tests/test_constants.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/tests copying build/lib/qcelemental/tests/__init__.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/tests copying build/lib/qcelemental/tests/test_molparse_to_string.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/tests copying build/lib/qcelemental/tests/test_molecule.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/tests copying build/lib/qcelemental/tests/test_molparse_from_schema.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/tests copying build/lib/qcelemental/tests/test_covalentradii.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/tests copying build/lib/qcelemental/tests/test_importing.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/tests copying build/lib/qcelemental/tests/test_molparse_to_schema.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/tests copying build/lib/qcelemental/tests/test_testing.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/tests copying build/lib/qcelemental/tests/test_vanderwaalsradii.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/tests copying build/lib/qcelemental/tests/test_periodictable.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/tests copying build/lib/qcelemental/tests/test_molparse_pubchem.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/tests copying build/lib/qcelemental/tests/test_molparse_parse_nucleus_label.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/tests copying build/lib/qcelemental/tests/test_units.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/tests copying build/lib/qcelemental/tests/test_model_general.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/tests copying build/lib/qcelemental/datum.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental creating /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/physical_constants copying build/lib/qcelemental/physical_constants/context.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/physical_constants copying build/lib/qcelemental/physical_constants/__init__.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/physical_constants copying build/lib/qcelemental/physical_constants/ureg.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/physical_constants copying build/lib/qcelemental/__init__.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental copying build/lib/qcelemental/covalent_radii.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental copying build/lib/qcelemental/extras.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental creating /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/molparse copying build/lib/qcelemental/molparse/from_string.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/molparse copying build/lib/qcelemental/molparse/__init__.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/molparse copying build/lib/qcelemental/molparse/to_schema.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/molparse copying build/lib/qcelemental/molparse/to_string.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/molparse copying build/lib/qcelemental/molparse/regex.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/molparse copying build/lib/qcelemental/molparse/pubchem.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/molparse copying build/lib/qcelemental/molparse/from_schema.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/molparse copying build/lib/qcelemental/molparse/from_arrays.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/molparse copying build/lib/qcelemental/molparse/nucleus.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/molparse copying build/lib/qcelemental/molparse/chgmult.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/molparse copying build/lib/qcelemental/_version.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental creating /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/models copying build/lib/qcelemental/models/__init__.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/models copying build/lib/qcelemental/models/procedures.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/models copying build/lib/qcelemental/models/results.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/models copying build/lib/qcelemental/models/types.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/models copying build/lib/qcelemental/models/basemodels.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/models copying build/lib/qcelemental/models/common_models.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/models copying build/lib/qcelemental/models/molecule.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/models copying build/lib/qcelemental/models/basis.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/models copying build/lib/qcelemental/models/align.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/models copying build/lib/qcelemental/periodic_table.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental creating /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/molutil copying build/lib/qcelemental/molutil/connectivity.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/molutil copying build/lib/qcelemental/molutil/align.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/molutil copying build/lib/qcelemental/molutil/test_molutil.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/molutil copying build/lib/qcelemental/molutil/__init__.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/molutil creating /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/data copying build/lib/qcelemental/data/nist_2011_atomic_weights.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/data copying build/lib/qcelemental/data/__init__.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/data copying build/lib/qcelemental/data/alvarez_2008_covalent_radii.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/data copying build/lib/qcelemental/data/nist_2014_codata.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/data copying build/lib/qcelemental/data/mantina_2009_vanderwaals_radii.py -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/data copying build/lib/qcelemental/data/README.md -> /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/data byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/util/np_blockwise.py to np_blockwise.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/util/importing.py to importing.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/util/serialization.py to serialization.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/util/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/util/misc.py to misc.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/util/test_scipy_hungarian.py to test_scipy_hungarian.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/util/np_rand3drot.py to np_rand3drot.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/util/scipy_hungarian.py to scipy_hungarian.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/util/internal.py to internal.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/util/gph_uno_bipartite.py to gph_uno_bipartite.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/util/test_gph_uno_bipartite.py to test_gph_uno_bipartite.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/util/autodocs.py to autodocs.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/util/itertools.py to itertools.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/testing.py to testing.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/vanderwaals_radii.py to vanderwaals_radii.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/exceptions.py to exceptions.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/tests/test_molparse_align_chiral.py to test_molparse_align_chiral.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/tests/test_utils.py to test_utils.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/tests/test_molparse_validate_and_fill_chgmult.py to test_molparse_validate_and_fill_chgmult.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/tests/test_molparse_from_string.py to test_molparse_from_string.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/tests/test_molparse_reconcile_nucleus.py to test_molparse_reconcile_nucleus.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/tests/addons.py to addons.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/tests/test_model_results.py to test_model_results.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/tests/test_datum.py to test_datum.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/tests/test_constants.py to test_constants.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/tests/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/tests/test_molparse_to_string.py to test_molparse_to_string.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/tests/test_molecule.py to test_molecule.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/tests/test_molparse_from_schema.py to test_molparse_from_schema.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/tests/test_covalentradii.py to test_covalentradii.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/tests/test_importing.py to test_importing.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/tests/test_molparse_to_schema.py to test_molparse_to_schema.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/tests/test_testing.py to test_testing.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/tests/test_vanderwaalsradii.py to test_vanderwaalsradii.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/tests/test_periodictable.py to test_periodictable.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/tests/test_molparse_pubchem.py to test_molparse_pubchem.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/tests/test_molparse_parse_nucleus_label.py to test_molparse_parse_nucleus_label.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/tests/test_units.py to test_units.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/tests/test_model_general.py to test_model_general.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/datum.py to datum.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/physical_constants/context.py to context.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/physical_constants/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/physical_constants/ureg.py to ureg.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/covalent_radii.py to covalent_radii.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/extras.py to extras.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/molparse/from_string.py to from_string.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/molparse/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/molparse/to_schema.py to to_schema.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/molparse/to_string.py to to_string.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/molparse/regex.py to regex.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/molparse/pubchem.py to pubchem.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/molparse/from_schema.py to from_schema.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/molparse/from_arrays.py to from_arrays.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/molparse/nucleus.py to nucleus.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/molparse/chgmult.py to chgmult.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/_version.py to _version.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/models/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/models/procedures.py to procedures.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/models/results.py to results.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/models/types.py to types.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/models/basemodels.py to basemodels.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/models/common_models.py to common_models.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/models/molecule.py to molecule.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/models/basis.py to basis.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/models/align.py to align.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/periodic_table.py to periodic_table.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/molutil/connectivity.py to connectivity.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/molutil/align.py to align.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/molutil/test_molutil.py to test_molutil.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/molutil/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/data/nist_2011_atomic_weights.py to nist_2011_atomic_weights.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/data/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/data/alvarez_2008_covalent_radii.py to alvarez_2008_covalent_radii.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/data/nist_2014_codata.py to nist_2014_codata.cpython-37.pyc byte-compiling /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental/data/mantina_2009_vanderwaals_radii.py to mantina_2009_vanderwaals_radii.cpython-37.pyc writing byte-compilation script '/tmp/tmptfth64i0.py' /usr/local/bin/python3.7 /tmp/tmptfth64i0.py removing /tmp/tmptfth64i0.py running install_egg_info Copying qcelemental.egg-info to /construction/science/py-qcelemental/stage/usr/local/lib/python3.7/site-packages/qcelemental-0.12.0-py3.7.egg-info running install_scripts writing list of installed files to '/construction/science/py-qcelemental/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for py37-qcelemental-0.12.0 file sizes/checksums [235]: ... done packing files [235]: ... done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Saturday, 15 FEB 2020 at 10:31:19 UTC Duration: 00:01:02