=> Building science/py-pyteomics@py36 Started : Saturday, 7 DEC 2019 at 23:48:35 UTC Platform: 5.7-DEVELOPMENT DragonFly v5.7.0.1123.g96cc8-DEVELOPMENT #17: Thu Dec 5 01:08:49 PST 2019 root@sting.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.7-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.7-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- PYTHON="/usr/local/bin/python3.6" XDG_DATA_HOME=/construction/science/py-pyteomics XDG_CONFIG_HOME=/construction/science/py-pyteomics HOME=/construction/science/py-pyteomics TMPDIR="/tmp" PATH=/construction/science/py-pyteomics/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- XDG_DATA_HOME=/construction/science/py-pyteomics XDG_CONFIG_HOME=/construction/science/py-pyteomics HOME=/construction/science/py-pyteomics TMPDIR="/tmp" PATH=/construction/science/py-pyteomics/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/science/py-pyteomics/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- PYTHON_INCLUDEDIR=include/python3.6m PYTHON_LIBDIR=lib/python3.6 PYTHON_PLATFORM=dragonfly5 PYTHON_SITELIBDIR=lib/python3.6/site-packages PYTHON_SUFFIX=36 PYTHON_VER=3.6 PYTHON_VERSION=python3.6 PYTHON2="@comment " PYTHON3="" OSREL=5.7 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/py36-pyteomics" EXAMPLESDIR="share/examples/py36-pyteomics" DATADIR="share/py36-pyteomics" WWWDIR="www/py36-pyteomics" ETCDIR="etc/py36-pyteomics" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/py36-pyteomics DOCSDIR=/usr/local/share/doc/py36-pyteomics EXAMPLESDIR=/usr/local/share/examples/py36-pyteomics WWWDIR=/usr/local/www/py36-pyteomics ETCDIR=/usr/local/etc/py36-pyteomics -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=LiveSystem USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=15 DPORTS_BUILDER= yes DISABLE_LICENSES= yes DEFAULT_VERSIONS= ssl=openssl FORCE_PACKAGE= yes DEVELOPER= yes HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.30.0 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=32 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500709 OSVERSION=9999999 OSREL=5.7 _OSRELEASE=5.7-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> py36-pyteomics-4.1.2_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.12.0.txz Installing pkg-1.12.0... Extracting pkg-1.12.0: .......... done ===> py36-pyteomics-4.1.2_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py36-pyteomics-4.1.2_1 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- => pyteomics-4.1.2.tar.gz doesn't seem to exist in /distfiles/. => Attempting to fetch https://files.pythonhosted.org/packages/source/p/pyteomics/pyteomics-4.1.2.tar.gz pyteomics-4.1.2.tar.gz 211 kB 21 MBps 00s ===> Fetching all distfiles required by py36-pyteomics-4.1.2_1 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> Fetching all distfiles required by py36-pyteomics-4.1.2_1 for building => SHA256 Checksum OK for pyteomics-4.1.2.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> Fetching all distfiles required by py36-pyteomics-4.1.2_1 for building ===> Extracting for py36-pyteomics-4.1.2_1 => SHA256 Checksum OK for pyteomics-4.1.2.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for py36-pyteomics-4.1.2_1 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> py36-pyteomics-4.1.2_1 depends on package: py36-setuptools>0 - not found ===> Installing existing package /packages/All/py36-setuptools-41.4.0.txz Installing py36-setuptools-41.4.0... `-- Installing python36-3.6.9_1... | `-- Installing expat-2.2.8... | `-- Extracting expat-2.2.8: .......... done | `-- Installing gettext-runtime-0.20.1... | | `-- Installing indexinfo-0.3.1... | | `-- Extracting indexinfo-0.3.1: . done | `-- Extracting gettext-runtime-0.20.1: .......... done | `-- Installing libffi-3.2.1_3... | `-- Extracting libffi-3.2.1_3: .......... done | `-- Installing ncurses-6.1.20190525... | `-- Extracting ncurses-6.1.20190525: .......... done | `-- Installing openssl-1.0.2t,1... | `-- Extracting openssl-1.0.2t,1: .......... done | `-- Installing readline-8.0.0... | `-- Extracting readline-8.0.0: .......... done `-- Extracting python36-3.6.9_1: .......... done Extracting py36-setuptools-41.4.0: .......... done ===== Message from openssl-1.0.2t,1: -- Edit /usr/local/openssl/openssl.cnf to fit your needs. -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: OpenSSL 1.0.2 is End-of-Life 2019-12-31 at which time this port will update to 1.1.1 branch. It is scheduled to be removed on or after 2019-12-31. ===== Message from python36-3.6.9_1: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py36-gdbm databases/py-gdbm@py36 py36-sqlite3 databases/py-sqlite3@py36 py36-tkinter x11-toolkits/py-tkinter@py36 ===> py36-pyteomics-4.1.2_1 depends on package: py36-setuptools>0 - found ===> Returning to build of py36-pyteomics-4.1.2_1 ===> py36-pyteomics-4.1.2_1 depends on file: /usr/local/bin/python3.6 - found -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for py36-pyteomics-4.1.2_1 running config -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for py36-pyteomics-4.1.2_1 running build running build_py creating build creating build/lib creating build/lib/pyteomics copying pyteomics/__init__.py -> build/lib/pyteomics copying pyteomics/_schema_defaults.py -> build/lib/pyteomics copying pyteomics/achrom.py -> build/lib/pyteomics copying pyteomics/electrochem.py -> build/lib/pyteomics copying pyteomics/fasta.py -> build/lib/pyteomics copying pyteomics/mgf.py -> build/lib/pyteomics copying pyteomics/ms1.py -> build/lib/pyteomics copying pyteomics/ms2.py -> build/lib/pyteomics copying pyteomics/mzid.py -> build/lib/pyteomics copying pyteomics/mzml.py -> build/lib/pyteomics copying pyteomics/mztab.py -> build/lib/pyteomics copying pyteomics/mzxml.py -> build/lib/pyteomics copying pyteomics/parser.py -> build/lib/pyteomics copying pyteomics/peff.py -> build/lib/pyteomics copying pyteomics/pepxml.py -> build/lib/pyteomics copying pyteomics/protxml.py -> build/lib/pyteomics copying pyteomics/pylab_aux.py -> build/lib/pyteomics copying pyteomics/tandem.py -> build/lib/pyteomics copying pyteomics/traml.py -> build/lib/pyteomics copying pyteomics/xml.py -> build/lib/pyteomics creating build/lib/pyteomics/mass copying pyteomics/mass/__init__.py -> build/lib/pyteomics/mass copying pyteomics/mass/mass.py -> build/lib/pyteomics/mass copying pyteomics/mass/unimod.py -> build/lib/pyteomics/mass creating build/lib/pyteomics/openms copying pyteomics/openms/__init__.py -> build/lib/pyteomics/openms copying pyteomics/openms/featurexml.py -> build/lib/pyteomics/openms copying pyteomics/openms/trafoxml.py -> build/lib/pyteomics/openms creating build/lib/pyteomics/auxiliary copying pyteomics/auxiliary/__init__.py -> build/lib/pyteomics/auxiliary copying pyteomics/auxiliary/constants.py -> build/lib/pyteomics/auxiliary copying pyteomics/auxiliary/file_helpers.py -> build/lib/pyteomics/auxiliary copying pyteomics/auxiliary/math.py -> build/lib/pyteomics/auxiliary copying pyteomics/auxiliary/patch.py -> build/lib/pyteomics/auxiliary copying pyteomics/auxiliary/structures.py -> build/lib/pyteomics/auxiliary copying pyteomics/auxiliary/target_decoy.py -> build/lib/pyteomics/auxiliary copying pyteomics/auxiliary/utils.py -> build/lib/pyteomics/auxiliary -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- ===> py36-pyteomics-4.1.2_1 depends on package: py36-lxml>=0 - not found ===> Installing existing package /packages/All/py36-lxml-4.4.2.txz Installing py36-lxml-4.4.2... `-- Installing libxml2-2.9.10... `-- Extracting libxml2-2.9.10: .......... done `-- Installing libxslt-1.1.34... | `-- Installing libgcrypt-1.8.5... | | `-- Installing libgpg-error-1.36... | | `-- Extracting libgpg-error-1.36: .......... done | `-- Extracting libgcrypt-1.8.5: .......... done `-- Extracting libxslt-1.1.34: .......... done Extracting py36-lxml-4.4.2: .......... done ===> py36-pyteomics-4.1.2_1 depends on package: py36-lxml>=0 - found ===> Returning to build of py36-pyteomics-4.1.2_1 ===> py36-pyteomics-4.1.2_1 depends on package: py36-matplotlib>=0 - not found ===> Installing existing package /packages/All/py36-matplotlib-2.2.4_1.txz Installing py36-matplotlib-2.2.4_1... `-- Installing fontconfig-2.12.6,1... | `-- Installing freetype2-2.10.1... | `-- Extracting freetype2-2.10.1: .......... done `-- Extracting fontconfig-2.12.6,1: .......... done Running fc-cache to build fontconfig cache... /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory fc-cache: succeeded `-- Installing png-1.6.37... `-- Extracting png-1.6.37: .......... done `-- Installing py36-cycler-0.10.0... | `-- Installing py36-six-1.12.0... | `-- Extracting py36-six-1.12.0: ....... done `-- Extracting py36-cycler-0.10.0: ........ done `-- Installing py36-dateutil-2.8.0... `-- Extracting py36-dateutil-2.8.0: .......... done `-- Installing py36-kiwisolver-1.1.0... `-- Extracting py36-kiwisolver-1.1.0: ...... done `-- Installing py36-numpy-1.16.5_1,1... | `-- Installing gcc8-8.3.0_3... | | `-- Installing binutils-2.33.1,1... | | `-- Extracting binutils-2.33.1,1: .......... done | | `-- Installing gmp-6.1.2_1... | | `-- Extracting gmp-6.1.2_1: .......... done | | `-- Installing mpc-1.1.0_2... | | `-- Installing mpfr-4.0.2... | | `-- Extracting mpfr-4.0.2: .......... done | | `-- Extracting mpc-1.1.0_2: ...... done | `-- Extracting gcc8-8.3.0_3: .......... done | `-- Installing openblas-0.2.20_11,1... | `-- Extracting openblas-0.2.20_11,1: .......... done | `-- Installing suitesparse-5.4.0_3... | | `-- Installing metis-5.1.0_8... | | `-- Extracting metis-5.1.0_8: .......... done | | `-- Installing tbb-2019.8... | | `-- Extracting tbb-2019.8: .......... done | `-- Extracting suitesparse-5.4.0_3: .......... done `-- Extracting py36-numpy-1.16.5_1,1: .......... done `-- Installing py36-pyparsing-2.4.5... `-- Extracting py36-pyparsing-2.4.5: ....... done `-- Installing py36-pytz-2019.3,1... `-- Extracting py36-pytz-2019.3,1: .......... done `-- Installing py36-tkinter-3.6.9_6... | `-- Installing tcl86-8.6.10... | `-- Extracting tcl86-8.6.10: .......... done | `-- Installing tk86-8.6.10_1... | | `-- Installing libX11-1.6.9,1... | | `-- Installing libXau-1.0.9... | | `-- Extracting libXau-1.0.9: .......... done | | `-- Installing libXdmcp-1.1.3... | | | `-- Installing xorgproto-2019.2... | | | `-- Extracting xorgproto-2019.2: .......... done | | `-- Extracting libXdmcp-1.1.3: ...... done | | `-- Installing libxcb-1.13.1... | | | `-- Installing libpthread-stubs-0.4... | | | `-- Extracting libpthread-stubs-0.4: . done | | `-- Extracting libxcb-1.13.1: .......... done | | `-- Extracting libX11-1.6.9,1: .......... done | | `-- Installing libXScrnSaver-1.2.3_2... | | `-- Installing libXext-1.3.4,1... | | `-- Extracting libXext-1.3.4,1: .......... done | | `-- Extracting libXScrnSaver-1.2.3_2: .......... done | | `-- Installing libXft-2.3.3... | | `-- Installing libXrender-0.9.10_2... | | `-- Extracting libXrender-0.9.10_2: ....... done | | `-- Extracting libXft-2.3.3: ......... done | `-- Extracting tk86-8.6.10_1: .......... done `-- Extracting py36-tkinter-3.6.9_6: ..... done `-- Installing py36-tornado-5.1.1... `-- Extracting py36-tornado-5.1.1: .......... done Extracting py36-matplotlib-2.2.4_1: .......... done ===== Message from freetype2-2.10.1: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/site/index.html, if documentation was installed). ===== Message from gcc8-8.3.0_3: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> py36-pyteomics-4.1.2_1 depends on package: py36-matplotlib>=0 - found ===> Returning to build of py36-pyteomics-4.1.2_1 ===> py36-pyteomics-4.1.2_1 depends on package: py36-numpy>0 - found ===> py36-pyteomics-4.1.2_1 depends on package: py36-pandas>=0 - not found ===> Installing existing package /packages/All/py36-pandas-0.24.2_1,1.txz Installing py36-pandas-0.24.2_1,1... `-- Installing py36-bottleneck-1.3.0... `-- Extracting py36-bottleneck-1.3.0: .......... done `-- Installing py36-numexpr-2.7.0... `-- Extracting py36-numexpr-2.7.0: .......... done `-- Installing py36-sqlite3-3.6.9_7... | `-- Installing sqlite3-3.30.1... | `-- Extracting sqlite3-3.30.1: ......... done `-- Extracting py36-sqlite3-3.6.9_7: ..... done Extracting py36-pandas-0.24.2_1,1: .......... done ===== Message from py36-pandas-0.24.2_1,1: -- Install math/py-statsmodels to enable parts of pandas.stats. Install devel/py-xarray to enable the to_xarray() function. ===> py36-pyteomics-4.1.2_1 depends on package: py36-pandas>=0 - found ===> Returning to build of py36-pyteomics-4.1.2_1 ===> py36-pyteomics-4.1.2_1 depends on package: py36-sqlalchemy13>=0 - not found ===> Installing existing package /packages/All/py36-sqlalchemy13-1.3.11.txz Installing py36-sqlalchemy13-1.3.11... Extracting py36-sqlalchemy13-1.3.11: .......... done ===> py36-pyteomics-4.1.2_1 depends on package: py36-sqlalchemy13>=0 - found ===> Returning to build of py36-pyteomics-4.1.2_1 ===> py36-pyteomics-4.1.2_1 depends on package: py36-setuptools>0 - found ===> py36-pyteomics-4.1.2_1 depends on file: /usr/local/bin/python3.6 - found -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for py36-pyteomics-4.1.2_1 ===> Generating temporary packing list running install running build running build_py running install_lib copying pyteomics/xml.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics copying pyteomics/mgf.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics copying pyteomics/_schema_defaults.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics copying pyteomics/peff.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics copying pyteomics/mzml.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics copying pyteomics/pepxml.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics copying pyteomics/parser.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics copying pyteomics/electrochem.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics copying pyteomics/mzxml.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics copying pyteomics/fasta.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics copying pyteomics/traml.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics copying pyteomics/achrom.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics copying pyteomics/ms2.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics copying pyteomics/pylab_aux.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics copying pyteomics/mztab.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics Skipping installation of /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/__init__.py (namespace package) copying pyteomics/tandem.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics copying pyteomics/mzid.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics copying pyteomics/protxml.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics copying pyteomics/ms1.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics copying pyteomics/openms/featurexml.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/openms copying pyteomics/openms/trafoxml.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/openms copying pyteomics/openms/__init__.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/openms copying pyteomics/auxiliary/file_helpers.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/auxiliary copying pyteomics/auxiliary/target_decoy.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/auxiliary copying pyteomics/auxiliary/structures.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/auxiliary copying pyteomics/auxiliary/utils.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/auxiliary copying pyteomics/auxiliary/__init__.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/auxiliary copying pyteomics/auxiliary/math.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/auxiliary copying pyteomics/auxiliary/constants.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/auxiliary copying pyteomics/auxiliary/patch.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/auxiliary copying pyteomics/mass/unimod.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/mass copying pyteomics/mass/__init__.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/mass copying pyteomics/mass/mass.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/mass byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/xml.py to xml.cpython-36.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/mgf.py to mgf.cpython-36.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/_schema_defaults.py to _schema_defaults.cpython-36.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/peff.py to peff.cpython-36.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/mzml.py to mzml.cpython-36.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/pepxml.py to pepxml.cpython-36.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/parser.py to parser.cpython-36.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/electrochem.py to electrochem.cpython-36.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/mzxml.py to mzxml.cpython-36.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/fasta.py to fasta.cpython-36.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/traml.py to traml.cpython-36.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/achrom.py to achrom.cpython-36.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/ms2.py to ms2.cpython-36.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/pylab_aux.py to pylab_aux.cpython-36.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/mztab.py to mztab.cpython-36.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/tandem.py to tandem.cpython-36.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/mzid.py to mzid.cpython-36.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/protxml.py to protxml.cpython-36.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/ms1.py to ms1.cpython-36.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/openms/featurexml.py to featurexml.cpython-36.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/openms/trafoxml.py to trafoxml.cpython-36.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/openms/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/auxiliary/file_helpers.py to file_helpers.cpython-36.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/auxiliary/target_decoy.py to target_decoy.cpython-36.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/auxiliary/structures.py to structures.cpython-36.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/auxiliary/utils.py to utils.cpython-36.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/auxiliary/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/auxiliary/math.py to math.cpython-36.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/auxiliary/constants.py to constants.cpython-36.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/auxiliary/patch.py to patch.cpython-36.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/mass/unimod.py to unimod.cpython-36.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/mass/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics/mass/mass.py to mass.cpython-36.pyc writing byte-compilation script '/tmp/tmpg49r4q5w.py' /usr/local/bin/python3.6 /tmp/tmpg49r4q5w.py removing /tmp/tmpg49r4q5w.py running install_egg_info running egg_info writing pyteomics.egg-info/PKG-INFO writing dependency_links to pyteomics.egg-info/dependency_links.txt writing namespace_packages to pyteomics.egg-info/namespace_packages.txt writing requirements to pyteomics.egg-info/requires.txt writing top-level names to pyteomics.egg-info/top_level.txt reading manifest file 'pyteomics.egg-info/SOURCES.txt' writing manifest file 'pyteomics.egg-info/SOURCES.txt' Copying pyteomics.egg-info to /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics-4.1.2-py3.6.egg-info Installing /construction/science/py-pyteomics/stage/usr/local/lib/python3.6/site-packages/pyteomics-4.1.2-py3.6-nspkg.pth running install_scripts writing list of installed files to '/construction/science/py-pyteomics/.PLIST.pymodtmp' ===> Creating unique files: Move MAN files needing SUFFIX ===> Creating unique files: Move files needing SUFFIX ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for py36-pyteomics-4.1.2_1 file sizes/checksums [107]: .. done packing files [107]: .. done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Saturday, 7 DEC 2019 at 23:50:10 UTC Duration: 00:01:34