=> Building science/py-pymol@py27 Started : Saturday, 15 FEB 2020 at 16:57:52 UTC Platform: 5.7-DEVELOPMENT DragonFly v5.7.0.1432.g9cd86-DEVELOPMENT #23: Thu Feb 13 14:43:04 PST 2020 root@sting.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.7-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.7-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- ===> The following configuration options are available for py27-pymol-2.3.0_1: ====> GUI (Graphical User Interface) support: you have to select exactly one of them QT5=on: Qt 5 toolkit support TK=off: Tk GUI toolkit support ===> Use 'make config' to modify these settings -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/construction/science/py-pymol XDG_CONFIG_HOME=/construction/science/py-pymol HOME=/construction/science/py-pymol TMPDIR="/tmp" PATH=/construction/science/py-pymol/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- XDG_DATA_HOME=/construction/science/py-pymol XDG_CONFIG_HOME=/construction/science/py-pymol HOME=/construction/science/py-pymol TMPDIR="/tmp" PATH=/construction/science/py-pymol/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/science/py-pymol/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- GTK2_VERSION="2.10.0" GTK3_VERSION="3.0.0" PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=dragonfly5 PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_SUFFIX=27 PYTHON_VER=2.7 PYTHON_VERSION=python2.7 PYTHON2="" PYTHON3="@comment " PYQT_APIDIR=share/PyQt5/2.7/qsci PYQT_DOCDIR=share/doc/PyQt5/2.7 PYQT_EXAMPLEDIR=share/examples/PyQt5/2.7 PYQT_SIPDIR=share/PyQt5/2.7/sip PYQT_DESIGNERDIR=/designer/PyQt5/2.7 PYQT_QMLDIR=/PyQt5/2.7 PYQT_SIPVERSION=4.19.19 PYQT_QSCIVERSION=2.11.2 PYQT_PYQTVERSION=5.13.1 OSREL=5.7 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/py27-pymol" EXAMPLESDIR="share/examples/py27-pymol" DATADIR="share/py27-pymol" WWWDIR="www/py27-pymol" ETCDIR="etc/py27-pymol" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/py27-pymol DOCSDIR=/usr/local/share/doc/py27-pymol EXAMPLESDIR=/usr/local/share/examples/py27-pymol WWWDIR=/usr/local/www/py27-pymol ETCDIR=/usr/local/etc/py27-pymol -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=LiveSystem USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=15 DPORTS_BUILDER= yes DISABLE_LICENSES= yes DEFAULT_VERSIONS= ssl=openssl FORCE_PACKAGE= yes DEVELOPER= yes HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.30.1 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=32 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500709 OSVERSION=9999999 OSREL=5.7 _OSRELEASE=5.7-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> py27-pymol-2.3.0_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.12.0_1.txz Installing pkg-1.12.0_1... Extracting pkg-1.12.0_1: .......... done ===> py27-pymol-2.3.0_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py27-pymol-2.3.0_1 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- => schrodinger-pymol-open-source-v2.3.0_GH0.tar.gz doesn't seem to exist in /distfiles/. => Attempting to fetch https://codeload.github.com/schrodinger/pymol-open-source/tar.gz/v2.3.0?dummy=/schrodinger-pymol-open-source-v2.3.0_GH0.tar.gz fetch: https://codeload.github.com/schrodinger/pymol-open-source/tar.gz/v2.3.0?dummy=/schrodinger-pymol-open-source-v2.3.0_GH0.tar.gz: size unknown fetch: https://codeload.github.com/schrodinger/pymol-open-source/tar.gz/v2.3.0?dummy=/schrodinger-pymol-open-source-v2.3.0_GH0.tar.gz: size of remote file is not known schrodinger-pymol-open-source-v2.3.0_GH0.tar.gz 9 MB 3298 kBps 03s ===> Fetching all distfiles required by py27-pymol-2.3.0_1 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> Fetching all distfiles required by py27-pymol-2.3.0_1 for building => SHA256 Checksum OK for schrodinger-pymol-open-source-v2.3.0_GH0.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> Fetching all distfiles required by py27-pymol-2.3.0_1 for building ===> Extracting for py27-pymol-2.3.0_1 => SHA256 Checksum OK for schrodinger-pymol-open-source-v2.3.0_GH0.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for py27-pymol-2.3.0_1 ===> Applying ports patches for py27-pymol-2.3.0_1 ===> Applying dragonfly patches for py27-pymol-2.3.0_1 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> py27-pymol-2.3.0_1 depends on package: py27-numpy>=1.15,1<1.19,1 - not found ===> Installing existing package /packages/All/py27-numpy-1.16.5_4,1.txz Installing py27-numpy-1.16.5_4,1... `-- Installing gcc8-8.3.0_3... | `-- Installing binutils-2.33.1_2,1... | | `-- Installing gettext-runtime-0.20.1... | | `-- Installing indexinfo-0.3.1... | | `-- Extracting indexinfo-0.3.1: . done | | `-- Extracting gettext-runtime-0.20.1: .......... done | `-- Extracting binutils-2.33.1_2,1: .......... done | `-- Installing gmp-6.1.2_1... | `-- Extracting gmp-6.1.2_1: .......... done | `-- Installing mpc-1.1.0_2... | | `-- Installing mpfr-4.0.2... | | `-- Extracting mpfr-4.0.2: .......... done | `-- Extracting mpc-1.1.0_2: ...... done `-- Extracting gcc8-8.3.0_3: .......... done `-- Installing openblas-0.3.7_2,1... `-- Extracting openblas-0.3.7_2,1: .......... done `-- Installing py27-setuptools-44.0.0... | `-- Installing python27-2.7.17_1... | | `-- Installing expat-2.2.8... | | `-- Extracting expat-2.2.8: .......... done | | `-- Installing libffi-3.2.1_3... | | `-- Extracting libffi-3.2.1_3: .......... done | | `-- Installing ncurses-6.1.20190525... | | `-- Extracting ncurses-6.1.20190525: .......... done | | `-- Installing openssl-1.1.1d,1... | | `-- Extracting openssl-1.1.1d,1: .......... done | | `-- Installing readline-8.0.1... | | `-- Extracting readline-8.0.1: .......... done | `-- Extracting python27-2.7.17_1: .......... done `-- Extracting py27-setuptools-44.0.0: .......... done `-- Installing suitesparse-5.4.0_5... | `-- Installing metis-5.1.0_8... | `-- Extracting metis-5.1.0_8: .......... done | `-- Installing tbb-2020.1... | `-- Extracting tbb-2020.1: .......... done `-- Extracting suitesparse-5.4.0_5: .......... done Extracting py27-numpy-1.16.5_4,1: .......... done ===== Message from gcc8-8.3.0_3: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===== Message from python27-2.7.17_1: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter ===== Message from py27-setuptools-44.0.0: -- Only /usr/local/bin/easy_install-2.7 script has been installed since Python 2.7 is not the default Python version. ===> py27-pymol-2.3.0_1 depends on package: py27-numpy>=1.15,1<1.19,1 - found ===> Returning to build of py27-pymol-2.3.0_1 ===> py27-pymol-2.3.0_1 depends on file: /usr/local/include/glm/glm.hpp - not found ===> Installing existing package /packages/All/glm-0.9.8.5_4,1.txz Installing glm-0.9.8.5_4,1... Extracting glm-0.9.8.5_4,1: .......... done ===> py27-pymol-2.3.0_1 depends on file: /usr/local/include/glm/glm.hpp - found ===> Returning to build of py27-pymol-2.3.0_1 ===> py27-pymol-2.3.0_1 depends on file: /usr/local/include/mmtf.hpp - not found ===> Installing existing package /packages/All/mmtf-cpp-1.0.0_2.txz Installing mmtf-cpp-1.0.0_2... `-- Installing msgpack-3.2.1... `-- Extracting msgpack-3.2.1: .......... done Extracting mmtf-cpp-1.0.0_2: .......... done ===> py27-pymol-2.3.0_1 depends on file: /usr/local/include/mmtf.hpp - found ===> Returning to build of py27-pymol-2.3.0_1 ===> py27-pymol-2.3.0_1 depends on package: py27-setuptools>0 - found ===> py27-pymol-2.3.0_1 depends on file: /usr/local/bin/python2.7 - found ===> py27-pymol-2.3.0_1 depends on package: xorgproto>=0 - not found ===> Installing existing package /packages/All/xorgproto-2019.2.txz Installing xorgproto-2019.2... Extracting xorgproto-2019.2: .......... done ===> py27-pymol-2.3.0_1 depends on package: xorgproto>=0 - found ===> Returning to build of py27-pymol-2.3.0_1 ===> py27-pymol-2.3.0_1 depends on package: xorgproto>=0 - found -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- ===> py27-pymol-2.3.0_1 depends on shared library: libfreetype.so - not found ===> Installing existing package /packages/All/freetype2-2.10.1.txz Installing freetype2-2.10.1... Extracting freetype2-2.10.1: .......... done ===== Message from freetype2-2.10.1: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/site/index.html, if documentation was installed). ===> py27-pymol-2.3.0_1 depends on shared library: libfreetype.so - found (/usr/local/lib/libfreetype.so) ===> Returning to build of py27-pymol-2.3.0_1 ===> py27-pymol-2.3.0_1 depends on shared library: libpng.so - not found ===> Installing existing package /packages/All/png-1.6.37.txz Installing png-1.6.37... Extracting png-1.6.37: .......... done ===> py27-pymol-2.3.0_1 depends on shared library: libpng.so - found (/usr/local/lib/libpng.so) ===> Returning to build of py27-pymol-2.3.0_1 ===> py27-pymol-2.3.0_1 depends on shared library: libmsgpackc.so - found (/usr/local/lib/libmsgpackc.so) ===> py27-pymol-2.3.0_1 depends on shared library: libGL.so - not found ===> Installing existing package /packages/All/mesa-libs-18.3.2_3.txz Installing mesa-libs-18.3.2_3... `-- Installing libX11-1.6.9,1... | `-- Installing libXau-1.0.9... | `-- Extracting libXau-1.0.9: .......... done | `-- Installing libXdmcp-1.1.3... | `-- Extracting libXdmcp-1.1.3: ...... done | `-- Installing libxcb-1.13.1... | | `-- Installing libpthread-stubs-0.4... | | `-- Extracting libpthread-stubs-0.4: .... done | | `-- Installing libxml2-2.9.10... | | `-- Extracting libxml2-2.9.10: .......... done | `-- Extracting libxcb-1.13.1: .......... done `-- Extracting libX11-1.6.9,1: .......... done `-- Installing libXdamage-1.1.5... | `-- Installing libXfixes-5.0.3_2... | `-- Extracting libXfixes-5.0.3_2: ....... done `-- Extracting libXdamage-1.1.5: ...... done `-- Installing libXext-1.3.4,1... `-- Extracting libXext-1.3.4,1: .......... done `-- Installing libXrandr-1.5.2... | `-- Installing libXrender-0.9.10_2... | `-- Extracting libXrender-0.9.10_2: ....... done `-- Extracting libXrandr-1.5.2: .......... done `-- Installing libXxf86vm-1.1.4_3... `-- Extracting libXxf86vm-1.1.4_3: .......... done `-- Installing libdrm-2.4.100... | `-- Installing libpciaccess-0.16... | | `-- Installing pciids-20200125... | | `-- Extracting pciids-20200125: ..... done | `-- Extracting libpciaccess-0.16: ...... done `-- Extracting libdrm-2.4.100: .......... done `-- Installing libelf-0.8.13_3... `-- Extracting libelf-0.8.13_3: .......... done `-- Installing libxshmfence-1.3... `-- Extracting libxshmfence-1.3: ...... done `-- Installing wayland-1.16.0... `-- Extracting wayland-1.16.0: .......... done Extracting mesa-libs-18.3.2_3: .......... done ===> py27-pymol-2.3.0_1 depends on shared library: libGL.so - found (/usr/local/lib/libGL.so) ===> Returning to build of py27-pymol-2.3.0_1 ===> py27-pymol-2.3.0_1 depends on shared library: libGLEW.so - not found ===> Installing existing package /packages/All/glew-2.1.0.txz Installing glew-2.1.0... `-- Installing libGLU-9.0.1... `-- Extracting libGLU-9.0.1: ...... done `-- Installing libICE-1.0.10,1... `-- Extracting libICE-1.0.10,1: .......... done `-- Installing libSM-1.2.3,1... `-- Extracting libSM-1.2.3,1: ........ done `-- Installing libXi-1.7.10,1... `-- Extracting libXi-1.7.10,1: .......... done `-- Installing libXmu-1.1.3,1... | `-- Installing libXt-1.2.0,1... | `-- Extracting libXt-1.2.0,1: .......... done `-- Extracting libXmu-1.1.3,1: .......... done Extracting glew-2.1.0: .......... done ===> py27-pymol-2.3.0_1 depends on shared library: libGLEW.so - found (/usr/local/lib/libGLEW.so) ===> Returning to build of py27-pymol-2.3.0_1 ===> py27-pymol-2.3.0_1 depends on shared library: libGLU.so - found (/usr/local/lib/libGLU.so) ===> py27-pymol-2.3.0_1 depends on shared library: libglut.so - not found ===> Installing existing package /packages/All/freeglut-3.0.0_2.txz Installing freeglut-3.0.0_2... Extracting freeglut-3.0.0_2: .......... done ===== Message from freeglut-3.0.0_2: -- Joystick support is untested and it is unknown if it works. Do not hesitate to contact x11@FreeBSD.org if this causes issues. ===> py27-pymol-2.3.0_1 depends on shared library: libglut.so - found (/usr/local/lib/libglut.so) ===> Returning to build of py27-pymol-2.3.0_1 ===> py27-pymol-2.3.0_1 depends on shared library: libxml2.so - found (/usr/local/lib/libxml2.so) -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for py27-pymol-2.3.0_1 running config -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for py27-pymol-2.3.0_1 running build running build_py creating build/lib.dragonfly-5.7-SYNTH-x86_64-2.7 creating build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy creating build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/mmtf copying modules/chempy/mmtf/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/mmtf copying modules/chempy/mmtf/io.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/mmtf creating build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/tinker copying modules/chempy/tinker/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/tinker copying modules/chempy/tinker/amber.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/tinker copying modules/chempy/tinker/keyword.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/tinker copying modules/chempy/tinker/realtime.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/tinker copying modules/chempy/tinker/state.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/tinker creating build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt copying modules/pmg_qt/TextEditor.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt copying modules/pmg_qt/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt copying modules/pmg_qt/advanced_settings_gui.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt copying modules/pmg_qt/builder.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt copying modules/pmg_qt/file_dialogs.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt copying modules/pmg_qt/keymapping.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt copying modules/pmg_qt/mimic_pmg_tk.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt copying modules/pmg_qt/mimic_tk.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt copying modules/pmg_qt/properties_dialog.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt copying modules/pmg_qt/pymol_gl_widget.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt copying modules/pmg_qt/pymol_qt_gui.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt copying modules/pmg_qt/volume.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt creating build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_tk creating build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_tk/startup copying modules/pmg_tk/startup/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_tk/startup copying modules/pmg_tk/startup/apbs_tools.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_tk/startup creating build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol creating build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/opengl creating build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/opengl/glu copying modules/pymol/opengl/glu/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/opengl/glu creating build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/embed creating build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/embed/epymol copying modules/pymol/embed/epymol/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/embed/epymol creating build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt/syntax copying modules/pmg_qt/syntax/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt/syntax copying modules/pmg_qt/syntax/pml.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt/syntax copying modules/pmg_qt/syntax/pmlparser.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt/syntax copying modules/pmg_qt/syntax/python.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt/syntax creating build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/fast copying modules/chempy/fast/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/fast creating build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/fragments copying modules/chempy/fragments/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/fragments creating build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_tk/skins copying modules/pmg_tk/skins/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_tk/skins creating build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/contrib copying modules/pymol/contrib/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/contrib creating build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_tk/skins/demo copying modules/pmg_tk/skins/demo/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_tk/skins/demo creating build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/Qt copying modules/pymol/Qt/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/Qt copying modules/pymol/Qt/utils.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/Qt creating build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt/forms copying modules/pmg_qt/forms/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt/forms creating build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/opengl/glut copying modules/pymol/opengl/glut/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/opengl/glut creating build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/stereochemistry copying modules/pymol/stereochemistry/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/stereochemistry copying modules/pymol/embed/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/embed creating build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol2 copying modules/pymol2/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol2 copying modules/pymol2/cmd2.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol2 copying modules/pmg_tk/ColorEditor.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_tk copying modules/pmg_tk/Demo.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_tk copying modules/pmg_tk/PMGApp.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_tk copying modules/pmg_tk/PyMOLMapLoad.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_tk copying modules/pmg_tk/SetEditor.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_tk copying modules/pmg_tk/Setting.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_tk copying modules/pmg_tk/TextEditor.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_tk copying modules/pmg_tk/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_tk copying modules/pmg_tk/volume.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_tk creating build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/ModalWindow.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/builder.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_tk/skins/normal creating build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/champ copying modules/chempy/champ/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/champ copying modules/chempy/champ/amber99.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/champ copying modules/chempy/champ/assign.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/champ copying modules/chempy/champ/formal_charges.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/champ creating build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/embed/wxpymol copying modules/pymol/embed/wxpymol/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/embed/wxpymol creating build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/annotation.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/appearance.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/benchmark.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/box.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/charge.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/cleanup.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/command.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/demo.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/density.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/distance.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/dragging.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/fedora.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/filter.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/label.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/measurement.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/message.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/mutagenesis.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/nucmutagenesis.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/pair_fit.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/pseudoatom.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/renaming.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/sculpting.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/security.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/stereodemo.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/toggle.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/wizard creating build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/opengl/gl copying modules/pymol/opengl/gl/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/opengl/gl copying modules/pymol/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol copying modules/pymol/__main__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol copying modules/pymol/_gui.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol copying modules/pymol/api.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol copying modules/pymol/callback.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol copying modules/pymol/cgo.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol copying modules/pymol/checking.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol copying modules/pymol/cmd.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol copying modules/pymol/colorprinting.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol copying modules/pymol/colorramping.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol copying modules/pymol/commanding.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol copying modules/pymol/completing.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol copying modules/pymol/computing.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol copying modules/pymol/constants.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol copying modules/pymol/constants_palette.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol copying modules/pymol/controlling.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol copying modules/pymol/creating.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol copying modules/pymol/diagnosing.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol copying modules/pymol/editing.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol copying modules/pymol/editor.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol copying modules/pymol/experimenting.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol copying modules/pymol/exporting.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol copying modules/pymol/externing.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol copying modules/pymol/feedingback.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol copying modules/pymol/fitting.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol copying modules/pymol/gui.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol copying modules/pymol/headering.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol copying modules/pymol/helping.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol copying modules/pymol/importing.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol copying modules/pymol/internal.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol copying modules/pymol/invocation.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol copying modules/pymol/keyboard.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol copying modules/pymol/keywords.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol copying modules/pymol/lazyio.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol copying modules/pymol/locking.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol copying modules/pymol/m4x.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol copying modules/pymol/menu.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol copying modules/pymol/monitoring.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol copying modules/pymol/morphing.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol copying modules/pymol/movie.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol copying modules/pymol/moving.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol copying modules/pymol/parser.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol copying modules/pymol/parsing.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol copying modules/pymol/povray.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol copying modules/pymol/preset.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol copying modules/pymol/pymolhttpd.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol copying modules/pymol/querying.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol copying modules/pymol/rpc.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol copying modules/pymol/selecting.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol copying modules/pymol/selector.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol copying modules/pymol/seqalign.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol copying modules/pymol/setting.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol copying modules/pymol/shortcut.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol copying modules/pymol/util.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol copying modules/pymol/vfont.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol copying modules/pymol/viewing.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol copying modules/pymol/wizarding.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol copying modules/pymol/xray.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol copying modules/pymol/xwin.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol creating build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/bmin copying modules/chempy/bmin/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/bmin copying modules/chempy/bmin/commands.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/bmin copying modules/chempy/bmin/realtime.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/bmin copying modules/chempy/bmin/state.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/bmin copying modules/chempy/bmin/util.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/bmin copying modules/chempy/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy copying modules/chempy/arc.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy copying modules/chempy/bond_amber.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy copying modules/chempy/bond_mmff.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy copying modules/chempy/bonds.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy copying modules/chempy/brick.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy copying modules/chempy/cc1.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy copying modules/chempy/cex.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy copying modules/chempy/charge.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy copying modules/chempy/cif.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy copying modules/chempy/cpv.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy copying modules/chempy/dictdb.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy copying modules/chempy/gamess1.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy copying modules/chempy/gms.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy copying modules/chempy/hetatm.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy copying modules/chempy/io.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy copying modules/chempy/lst.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy copying modules/chempy/mae.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy copying modules/chempy/map.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy copying modules/chempy/mass.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy copying modules/chempy/mmd.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy copying modules/chempy/models.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy copying modules/chempy/mol.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy copying modules/chempy/mol2.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy copying modules/chempy/neighbor.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy copying modules/chempy/pdb.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy copying modules/chempy/pkl.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy copying modules/chempy/place.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy copying modules/chempy/protein.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy copying modules/chempy/protein_amber.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy copying modules/chempy/protein_amber99.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy copying modules/chempy/protein_mmff.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy copying modules/chempy/protein_residues.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy copying modules/chempy/sdf.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy copying modules/chempy/solvate.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy copying modules/chempy/water_amber.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy copying modules/chempy/water_residues.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy copying modules/chempy/xyz.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy creating build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/plugins copying modules/pymol/plugins/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/plugins copying modules/pymol/plugins/installation.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/plugins copying modules/pymol/plugins/legacysupport.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/plugins copying modules/pymol/plugins/managergui.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/plugins copying modules/pymol/plugins/managergui_qt.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/plugins copying modules/pymol/plugins/repository.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/plugins copying modules/pymol/opengl/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/opengl copying modules/pmg_qt/forms/askpartial.ui -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt/forms copying modules/pmg_qt/forms/colors.ui -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt/forms copying modules/pmg_qt/forms/fetch.ui -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt/forms copying modules/pmg_qt/forms/load_aln.ui -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt/forms copying modules/pmg_qt/forms/load_mae.ui -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt/forms copying modules/pmg_qt/forms/load_map.ui -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt/forms copying modules/pmg_qt/forms/load_mtz.ui -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt/forms copying modules/pmg_qt/forms/load_traj.ui -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt/forms copying modules/pmg_qt/forms/movieexport.ui -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt/forms copying modules/pmg_qt/forms/pluginitem.ui -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt/forms copying modules/pmg_qt/forms/pluginmanager.ui -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt/forms copying modules/pmg_qt/forms/png.ui -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt/forms copying modules/pmg_qt/forms/props.ui -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt/forms copying modules/pmg_qt/forms/render.ui -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt/forms copying modules/pmg_qt/forms/save_molecule.ui -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt/forms copying modules/pmg_qt/forms/save_object.ui -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt/forms running build_ext building 'pymol._cmd' extension creating build/temp.dragonfly-5.7-SYNTH-x86_64-2.7 creating build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/build creating build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/build/generated creating build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib creating build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/mmtf-c creating build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc creating build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins creating build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin creating build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src creating build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0 creating build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1 creating build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2 creating build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer3 creating build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer4 creating build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer5 creating build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/modules creating build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/modules/cealign creating build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/modules/cealign/src creating build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/ov creating build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/ov/src c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c build/generated/ShaderText.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/build/generated/ShaderText.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/corplugin.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/carplugin.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/mmtf-c/mmtf_parser.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/mmtf-c/mmtf_parser.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/inthash.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/inthash.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/offplugin.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer0/Block.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0/Block.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer0/Debug.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0/Debug.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer0/Err.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0/Err.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer0/Deferred.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0/Deferred.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer0/Field.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0/Field.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer0/GenericBuffer.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0/GenericBuffer.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer0/Isosurf.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0/Isosurf.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer0/Match.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0/Match.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer0/MemoryDebug.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0/MemoryDebug.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer0/Parse.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0/Parse.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer0/ShaderMgr.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0/ShaderMgr.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer0/Sphere.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0/Sphere.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer0/Texture.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0/Texture.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer0/Pixmap.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0/Pixmap.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer0/Feedback.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0/Feedback.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer0/MyPNG.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0/MyPNG.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer0/Triangle.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0/Triangle.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer0/Util2.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0/Util2.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer0/Word.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0/Word.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/Basis.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/Basis.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/ButMode.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/ButMode.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/CGO.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/CGO.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/Character.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/Character.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/Control.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/Control.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/Font.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/Font.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/FontGLUT8x13.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/FontGLUT8x13.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer0/Vector.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0/Vector.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/FontGLUTHel10.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/FontGLUTHel10.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/FontGLUTHel18.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/FontGLUTHel18.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/Movie.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/Movie.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer0/Matrix.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0/Matrix.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/P.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/P.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/Pop.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/Pop.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/Ray.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/Ray.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/hash.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/hash.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/FontGLUT.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/FontGLUT.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/Scene.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/Scene.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/SceneRay.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/SceneRay.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/FontGLUTHel12.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/FontGLUTHel12.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/ScrollBar.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/ScrollBar.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/FontGLUT9x15.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/FontGLUT9x15.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/FontType.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/FontType.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/Setting.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/Setting.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/Symmetry.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/Symmetry.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/TypeFace.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/TypeFace.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/Wizard.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/Wizard.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/View.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/View.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer0/Crystal.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0/Crystal.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer0/Tetsurf.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0/Tetsurf.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/PyMOLObject.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/PyMOLObject.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer0/File.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0/File.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/AtomInfo.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/AtomInfo.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/Color.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/Color.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer0/GraphicsUtil.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0/GraphicsUtil.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer0/os_gl.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0/os_gl.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/BondTypeHistory.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/BondTypeHistory.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/CifMoleculeReader.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/CifMoleculeReader.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/DistSet.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/DistSet.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/HydrogenAdder.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/HydrogenAdder.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer0/Tracker.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0/Tracker.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/MmtfMoleculeReader.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/MmtfMoleculeReader.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/MolV3000.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/MolV3000.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/Extrude.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/Extrude.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/ObjectCGO.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/ObjectCGO.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/ObjectDist.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/ObjectDist.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/ObjectGadgetRamp.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/ObjectGadgetRamp.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/Text.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/Text.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/Seq.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/Seq.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/Ortho.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/Ortho.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/ObjectMap.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/ObjectMap.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/CifFile.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/CifFile.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/SceneRender.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/SceneRender.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/AssemblyHelpers.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/AssemblyHelpers.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/PConv.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/PConv.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/ObjectMolecule.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/ObjectMolecule.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/ObjectSlice.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/ObjectSlice.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/Mol2Typing.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/Mol2Typing.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer1/PConv.cpp:38: warning: "PyString_Check" redefined #define PyString_Check(o) (PyBytes_CheckExact(o) || PyUnicode_Check(o)) In file included from /usr/local/include/python2.7/Python.h:97, from layer0/os_python.h:34, from layer1/PConv.cpp:17: /usr/local/include/python2.7/stringobject.h:58: note: this is the location of the previous definition #define PyString_Check(op) \ c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/MmodTyping.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/MmodTyping.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/ObjectVolume.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/ObjectVolume.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/RepCartoon.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/RepCartoon.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer0/Map.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0/Map.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/ObjectAlignment.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/ObjectAlignment.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/ObjectCallback.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/ObjectCallback.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer0/Util.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0/Util.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/RepDihedral.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/RepDihedral.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/ObjectGadget.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/ObjectGadget.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/RepDistLabel.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/RepDistLabel.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/AtomInfoHistory.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/AtomInfoHistory.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/RepEllipsoid.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/RepEllipsoid.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/RepMesh.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/RepMesh.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/ObjectGroup.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/ObjectGroup.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/RepNonbondedSphere.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/RepNonbondedSphere.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/RepSphere.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/RepSphere.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/RepSphereImmediate.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/RepSphereImmediate.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/RepWireBond.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/RepWireBond.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/SculptCache.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/SculptCache.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer0/ShaderPrg.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0/ShaderPrg.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/VFont.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/VFont.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer3/CifDataValueFormatter.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer3/CifDataValueFormatter.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/GadgetSet.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/GadgetSet.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer3/Executive.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer3/Executive.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer3/Editor.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer3/Editor.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer3/MoleculeExporter.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer3/MoleculeExporter.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer3/PlugIOManager.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer3/PlugIOManager.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/RepLabel.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/RepLabel.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/ObjectSurface.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/ObjectSurface.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer3/Selector.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer3/Selector.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/RepDistDash.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/RepDistDash.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/RepRibbon.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/RepRibbon.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer4/Export.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer4/Export.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer4/PopUp.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer4/PopUp.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/SideChainHelper.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/SideChainHelper.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/RepDot.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/RepDot.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer5/TestPyMOL.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer5/TestPyMOL.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/RepAngle.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/RepAngle.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/ScenePicking.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/ScenePicking.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer3/AtomIterators.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer3/AtomIterators.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/RepSurface.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/RepSurface.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/CoordSet.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/CoordSet.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c modules/cealign/src/ccealignmodule.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/modules/cealign/src/ccealignmodule.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/Sculpt.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/Sculpt.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c ov/src/OVHeap.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/ov/src/OVHeap.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c ov/src/OVLexicon.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/ov/src/OVLexicon.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c ov/src/OVHeapArray.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/ov/src/OVHeapArray.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c ov/src/OVOneToOne.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/ov/src/OVOneToOne.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer4/Menu.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer4/Menu.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c ov/src/OVOneToAny.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/ov/src/OVOneToAny.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/RepSphereGenerate.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/RepSphereGenerate.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c ov/src/OVRandom.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/ov/src/OVRandom.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c ov/src/ov_utility.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/ov/src/ov_utility.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/RepNonbonded.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/RepNonbonded.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer5/PyMOL.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer5/PyMOL.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer5/main.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer5/main.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer3/Seeker.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer3/Seeker.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/ObjectMesh.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/ObjectMesh.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/Shaker.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/Shaker.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/RepCylBond.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/RepCylBond.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c ov/src/OVContext.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/ov/src/OVContext.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/Rep.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/Rep.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer3/MovieScene.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer3/MovieScene.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer1/COLLADA.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/COLLADA.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer2/ObjectMolecule2.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/ObjectMolecule2.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer3/MaeExportHelpers.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer3/MaeExportHelpers.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -pipe -O2 -fno-strict-aliasing -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python2.7 -c layer4/Cmd.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer4/Cmd.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon c++ -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/build/generated/ShaderText.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/mmtf-c/mmtf_parser.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/hash.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/inthash.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0/Block.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0/Crystal.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0/Debug.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0/Deferred.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0/Err.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0/Feedback.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0/Field.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0/File.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0/GenericBuffer.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0/GraphicsUtil.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0/Isosurf.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0/Map.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0/Match.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0/Matrix.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0/MemoryDebug.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0/MyPNG.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0/Parse.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0/Pixmap.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0/ShaderMgr.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0/ShaderPrg.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0/Sphere.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0/Tetsurf.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0/Texture.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0/Tracker.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0/Triangle.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0/Util.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0/Util2.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0/Vector.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0/Word.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer0/os_gl.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/Basis.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/ButMode.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/CGO.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/COLLADA.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/Character.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/Color.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/Control.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/Extrude.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/Font.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/FontGLUT.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/FontGLUT8x13.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/FontGLUT9x15.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/FontGLUTHel10.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/FontGLUTHel12.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/FontGLUTHel18.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/FontType.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/Movie.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/Ortho.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/P.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/PConv.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/Pop.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/PyMOLObject.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/Ray.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/Rep.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/Scene.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/ScenePicking.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/SceneRay.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/SceneRender.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/ScrollBar.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/Seq.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/Setting.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/Shaker.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/Symmetry.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/Text.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/TypeFace.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/View.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer1/Wizard.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/AssemblyHelpers.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/AtomInfo.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/AtomInfoHistory.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/BondTypeHistory.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/CifFile.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/CifMoleculeReader.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/CoordSet.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/DistSet.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/GadgetSet.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/HydrogenAdder.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/MmodTyping.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/MmtfMoleculeReader.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/Mol2Typing.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/MolV3000.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/ObjectAlignment.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/ObjectCGO.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/ObjectCallback.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/ObjectDist.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/ObjectGadget.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/ObjectGadgetRamp.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/ObjectGroup.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/ObjectMap.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/ObjectMesh.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/ObjectMolecule.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/ObjectMolecule2.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/ObjectSlice.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/ObjectSurface.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/ObjectVolume.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/RepAngle.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/RepCartoon.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/RepCylBond.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/RepDihedral.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/RepDistDash.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/RepDistLabel.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/RepDot.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/RepEllipsoid.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/RepLabel.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/RepMesh.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/RepNonbonded.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/RepNonbondedSphere.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/RepRibbon.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/RepSphere.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/RepSphereGenerate.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/RepSphereImmediate.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/RepSurface.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/RepWireBond.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/Sculpt.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/SculptCache.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/SideChainHelper.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer2/VFont.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer3/AtomIterators.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer3/CifDataValueFormatter.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer3/Editor.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer3/Executive.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer3/MaeExportHelpers.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer3/MoleculeExporter.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer3/MovieScene.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer3/PlugIOManager.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer3/Seeker.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer3/Selector.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer4/Cmd.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer4/Export.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer4/Menu.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer4/PopUp.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer5/PyMOL.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer5/TestPyMOL.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/layer5/main.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/modules/cealign/src/ccealignmodule.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/ov/src/OVContext.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/ov/src/OVHeap.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/ov/src/OVHeapArray.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/ov/src/OVLexicon.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/ov/src/OVOneToAny.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/ov/src/OVOneToOne.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/ov/src/OVRandom.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/ov/src/ov_utility.o -L/usr/local/lib -L/usr/local/lib -lpng -lfreetype -lxml2 -lGL -lGLEW -lexecinfo -lpython2.7 -o build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/_cmd.so building 'chempy.champ._champ' extension creating build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/champ cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Icontrib/champ -I/usr/local/include/python2.7 -c contrib/champ/champ.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/champ/champ.o cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Icontrib/champ -I/usr/local/include/python2.7 -c contrib/champ/champ_module.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/champ/champ_module.o cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Icontrib/champ -I/usr/local/include/python2.7 -c contrib/champ/err2.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/champ/err2.o cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Icontrib/champ -I/usr/local/include/python2.7 -c contrib/champ/chiral.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/champ/chiral.o cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Icontrib/champ -I/usr/local/include/python2.7 -c contrib/champ/feedback2.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/champ/feedback2.o cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Icontrib/champ -I/usr/local/include/python2.7 -c contrib/champ/list.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/champ/list.o cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Icontrib/champ -I/usr/local/include/python2.7 -c contrib/champ/os_memory.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/champ/os_memory.o cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Icontrib/champ -I/usr/local/include/python2.7 -c contrib/champ/sort.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/champ/sort.o cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Icontrib/champ -I/usr/local/include/python2.7 -c contrib/champ/strblock.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/champ/strblock.o cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Icontrib/champ -I/usr/local/include/python2.7 -c contrib/champ/vla.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/champ/vla.o contrib/champ/os_memory.c: In function 'OSMemoryZero': contrib/champ/os_memory.c:55:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] while(count&&(((int)p)&mask)) { ^ contrib/champ/os_memory.c: In function 'OSMemoryHashAdd': contrib/champ/os_memory.c:137:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] hash=(int)rec; ^ contrib/champ/os_memory.c: In function 'OSMemoryHashRemove': contrib/champ/os_memory.c:150:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] hash=(int)rec; ^ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/champ/champ.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/champ/champ_module.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/champ/chiral.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/champ/err2.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/champ/feedback2.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/champ/list.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/champ/os_memory.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/champ/sort.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/champ/strblock.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/contrib/champ/vla.o -L/usr/local/lib -lpython2.7 -o build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/champ/_champ.so -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- ===> py27-pymol-2.3.0_1 depends on package: py27-msgpack>0 - not found ===> Installing existing package /packages/All/py27-msgpack-0.6.2.txz Installing py27-msgpack-0.6.2... Extracting py27-msgpack-0.6.2: .......... done ===> py27-pymol-2.3.0_1 depends on package: py27-msgpack>0 - found ===> Returning to build of py27-pymol-2.3.0_1 ===> py27-pymol-2.3.0_1 depends on package: py27-Pmw>0 - not found ===> Installing existing package /packages/All/py27-Pmw-2.0.1.txz Installing py27-Pmw-2.0.1... `-- Installing blt-2.5.3_4... | `-- Installing jpeg-turbo-2.0.4... | `-- Extracting jpeg-turbo-2.0.4: .......... done | `-- Installing tcl86-8.6.10... | `-- Extracting tcl86-8.6.10: .......... done | `-- Installing tk86-8.6.10_1... | | `-- Installing fontconfig-2.12.6,1... | | `-- Extracting fontconfig-2.12.6,1: .......... done Running fc-cache to build fontconfig cache... /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory fc-cache: succeeded | | `-- Installing libXScrnSaver-1.2.3_2... | | `-- Extracting libXScrnSaver-1.2.3_2: .......... done | | `-- Installing libXft-2.3.3... | | `-- Extracting libXft-2.3.3: ......... done | `-- Extracting tk86-8.6.10_1: .......... done `-- Extracting blt-2.5.3_4: .......... done `-- Installing py27-tkinter-2.7.17_6... `-- Extracting py27-tkinter-2.7.17_6: ..... done Extracting py27-Pmw-2.0.1: .......... done ===> py27-pymol-2.3.0_1 depends on package: py27-Pmw>0 - found ===> Returning to build of py27-pymol-2.3.0_1 ===> py27-pymol-2.3.0_1 depends on package: py27-numpy>=1.15,1<1.19,1 - found ===> py27-pymol-2.3.0_1 depends on package: py27-setuptools>0 - found ===> py27-pymol-2.3.0_1 depends on file: /usr/local/bin/python2.7 - found ===> py27-pymol-2.3.0_1 depends on package: py27-qt5-core>=5.13.1 - not found ===> Installing existing package /packages/All/py27-qt5-core-5.13.1.txz Installing py27-qt5-core-5.13.1... `-- Installing py27-enum34-1.1.6... `-- Extracting py27-enum34-1.1.6: .......... done `-- Installing py27-sip-4.19.19_1,1... `-- Extracting py27-sip-4.19.19_1,1: .......... done `-- Installing qscintilla2-qt5-2.11.2_1... | `-- Installing qt5-core-5.13.2_1... | | `-- Installing glib-2.56.3_7,1... | | `-- Installing libiconv-1.14_11... | | `-- Extracting libiconv-1.14_11: .......... done | | `-- Installing pcre-8.43_2... | | `-- Extracting pcre-8.43_2: .......... done | | `-- Installing python37-3.7.6... | | `-- Extracting python37-3.7.6: .......... done | | `-- Extracting glib-2.56.3_7,1: .......... done No schema files found: doing nothing. | | `-- Installing icu-65.1,1... | | `-- Extracting icu-65.1,1: .......... done | | `-- Installing pcre2-10.34... | | `-- Extracting pcre2-10.34: .......... done | | `-- Installing qtchooser-66_1... | | `-- Extracting qtchooser-66_1: ...... done | `-- Extracting qt5-core-5.13.2_1: .......... done Removing qtchooser links done Creating qtchooser links /usr/local/bin/qlalr done | `-- Installing qt5-gui-5.13.2_3... | | `-- Installing dbus-1.12.16... ===> Creating groups. Creating group 'messagebus' with gid '556'. ===> Creating users Creating user 'messagebus' with uid '556'. | | `-- Extracting dbus-1.12.16: ......... done | | `-- Installing encodings-1.0.5,1... | | `-- Extracting encodings-1.0.5,1: .......... done | | `-- Installing harfbuzz-2.6.4... | | `-- Installing graphite2-1.3.13_1... | | `-- Extracting graphite2-1.3.13_1: .......... done | | `-- Extracting harfbuzz-2.6.4: .......... done | | `-- Installing libevdev-1.5.9... | | `-- Extracting libevdev-1.5.9: .......... done | | `-- Installing libinput-1.12.6_1... | | `-- Installing libmtdev-1.1.5_2... | | `-- Extracting libmtdev-1.1.5_2: ......... done | | `-- Installing libudev-devd-0.4... | | `-- Extracting libudev-devd-0.4: ..... done | | `-- Installing py37-evdev-0.8.1_1... | | | `-- Installing py37-setuptools-44.0.0... | | | `-- Extracting py37-setuptools-44.0.0: .......... done | | `-- Extracting py37-evdev-0.8.1_1: .......... done | | `-- Installing py37-pyudev-0.21.0... | | | `-- Installing py37-six-1.14.0... | | | `-- Extracting py37-six-1.14.0: ....... done | | `-- Extracting py37-pyudev-0.21.0: .......... done | | `-- Extracting libinput-1.12.6_1: .......... done | | `-- Installing libxkbcommon-0.8.4... | | `-- Installing xkeyboard-config-2.27... | | `-- Extracting xkeyboard-config-2.27: .......... done | | `-- Extracting libxkbcommon-0.8.4: .......... done | | `-- Installing qt5-dbus-5.13.2_1... | | `-- Extracting qt5-dbus-5.13.2_1: .......... done Removing qtchooser links done Creating qtchooser links /usr/local/bin/qdbuscpp2xml /usr/local/bin/qdbusxml2cpp done | | `-- Installing qt5-network-5.13.2... | | `-- Installing ca_root_nss-3.50... | | `-- Extracting ca_root_nss-3.50: ..... done | | `-- Extracting qt5-network-5.13.2: .......... done | | `-- Installing vulkan-headers-1.1.108.0... | | `-- Extracting vulkan-headers-1.1.108.0: .......... done | | `-- Installing xcb-util-image-0.4.0_1... | | `-- Installing xcb-util-0.4.0_2,1... | | `-- Extracting xcb-util-0.4.0_2,1: .......... done | | `-- Extracting xcb-util-image-0.4.0_1: ........ done | | `-- Installing xcb-util-keysyms-0.4.0_1... | | `-- Extracting xcb-util-keysyms-0.4.0_1: ...... done | | `-- Installing xcb-util-renderutil-0.3.9_1... | | `-- Extracting xcb-util-renderutil-0.3.9_1: ...... done | | `-- Installing xcb-util-wm-0.4.1_3... | | `-- Extracting xcb-util-wm-0.4.1_3: .......... done | | `-- Installing xdg-utils-1.1.3_1... | | `-- Installing hicolor-icon-theme-0.17... | | `-- Extracting hicolor-icon-theme-0.17: . done | | `-- Installing xprop-1.2.4... | | `-- Extracting xprop-1.2.4: .. done | | `-- Installing xset-1.2.4_3... | | `-- Extracting xset-1.2.4_3: .. done | | `-- Extracting xdg-utils-1.1.3_1: .......... done | | `-- Installing xorg-fonts-truetype-7.7_1... | | `-- Installing dejavu-2.37_1... | | | `-- Installing mkfontscale-1.2.1... | | | `-- Installing libfontenc-1.1.4... | | | `-- Extracting libfontenc-1.1.4: ...... done | | | `-- Extracting mkfontscale-1.2.1: .... done | | `-- Extracting dejavu-2.37_1: .......... done | | `-- Installing font-bh-ttf-1.0.3_4... | | `-- Extracting font-bh-ttf-1.0.3_4: .......... done | | `-- Installing font-misc-ethiopic-1.0.3_4... | | `-- Extracting font-misc-ethiopic-1.0.3_4: ... done | | `-- Installing font-misc-meltho-1.0.3_4... | | `-- Extracting font-misc-meltho-1.0.3_4: .......... done | `-- Extracting qt5-gui-5.13.2_3: .......... done Removing qtchooser links done Creating qtchooser links /usr/local/bin/qvkgen done | `-- Installing qt5-printsupport-5.13.2... | | `-- Installing cups-2.2.12... | | `-- Installing avahi-app-0.7_2... | | | `-- Installing dbus-glib-0.110... | | | `-- Extracting dbus-glib-0.110: .......... done | | | `-- Installing gdbm-1.18.1_1... | | | `-- Extracting gdbm-1.18.1_1: .......... done | | | `-- Installing gnome_subr-1.0... | | | `-- Extracting gnome_subr-1.0: . done | | | `-- Installing gobject-introspection-1.56.1,1... | | | `-- Extracting gobject-introspection-1.56.1,1: .......... done | | | `-- Installing libdaemon-0.14_1... | | | `-- Extracting libdaemon-0.14_1: .......... done ===> Creating groups. Creating group 'avahi' with gid '558'. ===> Creating users Creating user 'avahi' with uid '558'. | | `-- Extracting avahi-app-0.7_2: .......... done | | `-- Installing gnutls-3.6.12... | | | `-- Installing libidn2-2.3.0_1... | | | `-- Installing libunistring-0.9.10_1... | | | `-- Extracting libunistring-0.9.10_1: .......... done | | | `-- Extracting libidn2-2.3.0_1: .......... done | | | `-- Installing libtasn1-4.15.0... | | | `-- Extracting libtasn1-4.15.0: .......... done | | | `-- Installing nettle-3.5.1_1... | | | `-- Extracting nettle-3.5.1_1: .......... done | | | `-- Installing p11-kit-0.23.18.1... | | | `-- Extracting p11-kit-0.23.18.1: .......... done | | | `-- Installing trousers-0.3.14_2... | | | `-- Installing tpm-emulator-0.7.4_2... ===> Creating groups. Using existing group '_tss'. ===> Creating users Using existing user '_tss'. | | | `-- Extracting tpm-emulator-0.7.4_2: ........ done ===> Creating groups. Using existing group '_tss'. ===> Creating users Using existing user '_tss'. | | | `-- Extracting trousers-0.3.14_2: .......... done | | `-- Extracting gnutls-3.6.12: .......... done | | `-- Installing libpaper-1.1.24.4... | | `-- Extracting libpaper-1.1.24.4: .......... done ===> Creating groups. Creating group 'cups' with gid '193'. ===> Creating users Creating user 'cups' with uid '193'. | | `-- Extracting cups-2.2.12: .......... done | | `-- Installing qt5-widgets-5.13.2_1... | | `-- Extracting qt5-widgets-5.13.2_1: .......... done Removing qtchooser links done Creating qtchooser links /usr/local/bin/uic done | `-- Extracting qt5-printsupport-5.13.2: .......... done `-- Extracting qscintilla2-qt5-2.11.2_1: .......... done Extracting py27-qt5-core-5.13.1: .......... done ===== Message from python37-3.7.6: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py37-gdbm databases/py-gdbm@py37 py37-sqlite3 databases/py-sqlite3@py37 py37-tkinter x11-toolkits/py-tkinter@py37 ===== Message from qtchooser-66_1: -- qtchooser is a wrapper that allows selecting whether Qt4 or Qt5 binaries for qmake, moc and other tools will be run when invoking the binaries in $PATH. By default, the Qt5 versions are run. It is possible to change the behavior by setting the QT_SELECT environment variable to "qt4". See qtchooser(1) for more information. ===== Message from ca_root_nss-3.50: -- FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem ===== Message from dejavu-2.37_1: -- Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. ===== Message from trousers-0.3.14_2: -- To run tcsd automatically, add the following line to /etc/rc.conf: tcsd_enable="YES" You might want to edit /usr/local/etc/tcsd.conf to reflect your setup. If you want to use tcsd with software TPM emulator, use the following configuration in /etc/rc.conf: tcsd_enable="YES" tcsd_mode="emulator" tpmd_enable="YES" To use TPM, add your_account to '_tss' group like following: # pw groupmod _tss -m your_account ===> py27-pymol-2.3.0_1 depends on package: py27-qt5-core>=5.13.1 - found ===> Returning to build of py27-pymol-2.3.0_1 ===> py27-pymol-2.3.0_1 depends on package: py27-qt5-gui>=5.13.1 - not found ===> Installing existing package /packages/All/py27-qt5-gui-5.13.1.txz Installing py27-qt5-gui-5.13.1... `-- Installing qt5-imageformats-5.13.2_1... | `-- Installing jasper-2.0.16_1... | `-- Extracting jasper-2.0.16_1: .......... done | `-- Installing libmng-1.0.10_3... | | `-- Installing lcms-1.19_6,1... | | `-- Installing tiff-4.1.0... | | | `-- Installing jbigkit-2.1_1... | | | `-- Extracting jbigkit-2.1_1: .......... done | | `-- Extracting tiff-4.1.0: .......... done | | `-- Extracting lcms-1.19_6,1: .......... done | `-- Extracting libmng-1.0.10_3: ......... done | `-- Installing webp-1.1.0... | | `-- Installing giflib-5.2.1... | | `-- Extracting giflib-5.2.1: .......... done | `-- Extracting webp-1.1.0: .......... done `-- Extracting qt5-imageformats-5.13.2_1: .......... done Extracting py27-qt5-gui-5.13.1: .......... done ===> py27-pymol-2.3.0_1 depends on package: py27-qt5-gui>=5.13.1 - found ===> Returning to build of py27-pymol-2.3.0_1 ===> py27-pymol-2.3.0_1 depends on package: py27-qt5-opengl>=5.13.1 - not found ===> Installing existing package /packages/All/py27-qt5-opengl-5.13.1.txz Installing py27-qt5-opengl-5.13.1... `-- Installing py27-qt5-widgets-5.13.1... `-- Extracting py27-qt5-widgets-5.13.1: .......... done `-- Installing qt5-opengl-5.13.2... `-- Extracting qt5-opengl-5.13.2: .......... done Extracting py27-qt5-opengl-5.13.1: ..... done ===> py27-pymol-2.3.0_1 depends on package: py27-qt5-opengl>=5.13.1 - found ===> Returning to build of py27-pymol-2.3.0_1 -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for py27-pymol-2.3.0_1 ===> Generating temporary packing list running install running build running build_py running build_ext running install_lib creating /construction/science/py-pymol/stage/usr/local/lib/python2.7 creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol2 copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol2/cmd2.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol2 copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol2/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol2 creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk/startup copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_tk/startup/apbs_tools.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk/startup copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_tk/startup/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk/startup copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_tk/TextEditor.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_tk/SetEditor.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_tk/Setting.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_tk/volume.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_tk/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk/skins creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk/skins/normal copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_tk/skins/normal/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk/skins/normal copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_tk/skins/normal/builder.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk/skins/normal copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_tk/skins/normal/ModalWindow.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk/skins/normal creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk/skins/demo copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_tk/skins/demo/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk/skins/demo copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_tk/skins/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk/skins copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_tk/ColorEditor.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_tk/PMGApp.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_tk/Demo.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_tk/PyMOLMapLoad.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt/volume.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt/builder.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt/pymol_qt_gui.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt/advanced_settings_gui.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt/mimic_tk.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt/TextEditor.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt/pymol_gl_widget.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/forms copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt/forms/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/forms copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt/forms/load_map.ui -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/forms copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt/forms/save_molecule.ui -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/forms copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt/forms/render.ui -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/forms copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt/forms/props.ui -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/forms copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt/forms/load_aln.ui -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/forms copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt/forms/png.ui -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/forms copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt/forms/pluginmanager.ui -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/forms copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt/forms/fetch.ui -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/forms copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt/forms/pluginitem.ui -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/forms copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt/forms/colors.ui -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/forms copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt/forms/movieexport.ui -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/forms copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt/forms/load_traj.ui -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/forms copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt/forms/load_mae.ui -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/forms copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt/forms/save_object.ui -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/forms copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt/forms/load_mtz.ui -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/forms copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt/forms/askpartial.ui -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/forms copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt/mimic_pmg_tk.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt/keymapping.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt/file_dialogs.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt/properties_dialog.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/syntax copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt/syntax/python.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/syntax copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt/syntax/pmlparser.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/syntax copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt/syntax/pml.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/syntax copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pmg_qt/syntax/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/syntax creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/mass.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/map.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/mmd.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/pdb.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/protein_amber.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/models.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/mol.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/mae.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/neighbor.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/place.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/mol2.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/protein_amber99.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/lst.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/protein.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/io.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/pkl.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/champ copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/champ/_champ.so -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/champ copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/champ/amber99.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/champ copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/champ/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/champ copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/champ/assign.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/champ copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/champ/formal_charges.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/champ copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/cif.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/bond_mmff.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/bond_amber.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/arc.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/fragments copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/fragments/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/fragments creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/tinker copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/tinker/state.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/tinker copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/tinker/realtime.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/tinker copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/tinker/keyword.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/tinker copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/tinker/amber.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/tinker copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/tinker/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/tinker copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/hetatm.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/mmtf copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/mmtf/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/mmtf copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/mmtf/io.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/mmtf copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/cpv.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/gms.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/charge.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/cex.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/cc1.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/brick.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/bonds.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/fast copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/fast/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/fast copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/gamess1.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/dictdb.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/bmin copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/bmin/state.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/bmin copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/bmin/realtime.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/bmin copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/bmin/commands.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/bmin copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/bmin/util.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/bmin copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/bmin/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/bmin copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/xyz.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/protein_residues.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/protein_mmff.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/sdf.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/water_amber.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/solvate.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/chempy/water_residues.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/_cmd.so -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/_gui.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/callback.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/__main__.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/checking.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/cgo.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/stereochemistry copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/stereochemistry/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/stereochemistry copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/parsing.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/parser.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/preset.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/povray.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/experimenting.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/exporting.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/lazyio.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/locking.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/monitoring.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/menu.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/m4x.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/morphing.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/editing.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/movie.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/moving.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/editor.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/opengl copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/opengl/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/opengl creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/opengl/glut copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/opengl/glut/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/opengl/glut creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/opengl/gl copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/opengl/gl/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/opengl/gl creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/opengl/glu copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/opengl/glu/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/opengl/glu creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/wizard/nucmutagenesis.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/wizard/sculpting.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/wizard/security.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/wizard/pseudoatom.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/wizard/stereodemo.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/wizard/renaming.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/wizard/pair_fit.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/wizard/toggle.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/wizard/annotation.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/wizard/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/wizard/appearance.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/wizard/box.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/wizard/benchmark.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/wizard/measurement.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/wizard/label.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/wizard/filter.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/wizard/charge.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/wizard/cleanup.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/wizard/fedora.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/wizard/mutagenesis.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/wizard/message.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/wizard/dragging.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/wizard/distance.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/wizard/density.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/wizard/demo.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/wizard/command.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/embed copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/embed/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/embed creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/embed/wxpymol copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/embed/wxpymol/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/embed/wxpymol creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/embed/epymol copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/embed/epymol/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/embed/epymol copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/constants.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/Qt copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/Qt/utils.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/Qt copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/Qt/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/Qt copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/keywords.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/diagnosing.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/creating.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/controlling.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/constants_palette.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/completing.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/commanding.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/rpc.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/querying.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/externing.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/importing.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/shortcut.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/setting.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/helping.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/seqalign.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/colorramping.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/colorprinting.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/cmd.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/pymolhttpd.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/keyboard.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/computing.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/selector.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/xray.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/internal.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/wizarding.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/contrib copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/contrib/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/contrib copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/selecting.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/headering.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/gui.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/fitting.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/feedingback.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/viewing.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/vfont.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/util.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/xwin.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/invocation.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/api.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/plugins copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/plugins/managergui_qt.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/plugins copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/plugins/legacysupport.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/plugins copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/plugins/managergui.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/plugins copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/plugins/installation.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/plugins copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/plugins/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/plugins copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/plugins/repository.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/plugins copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pymol/__init__.py -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol2/cmd2.py to cmd2.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol2/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk/startup/apbs_tools.py to apbs_tools.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk/startup/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk/TextEditor.py to TextEditor.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk/SetEditor.py to SetEditor.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk/Setting.py to Setting.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk/volume.py to volume.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk/skins/normal/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk/skins/normal/builder.py to builder.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk/skins/normal/ModalWindow.py to ModalWindow.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk/skins/demo/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk/skins/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk/ColorEditor.py to ColorEditor.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk/PMGApp.py to PMGApp.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk/Demo.py to Demo.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_tk/PyMOLMapLoad.py to PyMOLMapLoad.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/volume.py to volume.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/builder.py to builder.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/pymol_qt_gui.py to pymol_qt_gui.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/advanced_settings_gui.py to advanced_settings_gui.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/mimic_tk.py to mimic_tk.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/TextEditor.py to TextEditor.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/pymol_gl_widget.py to pymol_gl_widget.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/forms/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/mimic_pmg_tk.py to mimic_pmg_tk.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/keymapping.py to keymapping.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/file_dialogs.py to file_dialogs.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/properties_dialog.py to properties_dialog.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/syntax/python.py to python.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/syntax/pmlparser.py to pmlparser.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/syntax/pml.py to pml.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pmg_qt/syntax/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/mass.py to mass.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/map.py to map.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/mmd.py to mmd.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/pdb.py to pdb.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/protein_amber.py to protein_amber.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/models.py to models.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/mol.py to mol.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/mae.py to mae.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/neighbor.py to neighbor.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/place.py to place.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/mol2.py to mol2.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/protein_amber99.py to protein_amber99.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/lst.py to lst.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/protein.py to protein.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/io.py to io.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/pkl.py to pkl.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/champ/amber99.py to amber99.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/champ/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/champ/assign.py to assign.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/champ/formal_charges.py to formal_charges.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/cif.py to cif.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/bond_mmff.py to bond_mmff.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/bond_amber.py to bond_amber.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/arc.py to arc.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/fragments/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/tinker/state.py to state.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/tinker/realtime.py to realtime.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/tinker/keyword.py to keyword.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/tinker/amber.py to amber.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/tinker/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/hetatm.py to hetatm.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/mmtf/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/mmtf/io.py to io.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/cpv.py to cpv.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/gms.py to gms.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/charge.py to charge.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/cex.py to cex.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/cc1.py to cc1.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/brick.py to brick.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/bonds.py to bonds.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/fast/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/gamess1.py to gamess1.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/dictdb.py to dictdb.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/bmin/state.py to state.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/bmin/realtime.py to realtime.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/bmin/commands.py to commands.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/bmin/util.py to util.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/bmin/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/xyz.py to xyz.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/protein_residues.py to protein_residues.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/protein_mmff.py to protein_mmff.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/sdf.py to sdf.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/water_amber.py to water_amber.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/solvate.py to solvate.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/chempy/water_residues.py to water_residues.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/_gui.py to _gui.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/callback.py to callback.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/__main__.py to __main__.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/checking.py to checking.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/cgo.py to cgo.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/stereochemistry/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/parsing.py to parsing.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/parser.py to parser.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/preset.py to preset.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/povray.py to povray.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/experimenting.py to experimenting.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/exporting.py to exporting.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/lazyio.py to lazyio.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/locking.py to locking.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/monitoring.py to monitoring.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/menu.py to menu.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/m4x.py to m4x.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/morphing.py to morphing.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/editing.py to editing.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/movie.py to movie.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/moving.py to moving.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/editor.py to editor.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/opengl/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/opengl/glut/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/opengl/gl/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/opengl/glu/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/nucmutagenesis.py to nucmutagenesis.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/sculpting.py to sculpting.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/security.py to security.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/pseudoatom.py to pseudoatom.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/stereodemo.py to stereodemo.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/renaming.py to renaming.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/pair_fit.py to pair_fit.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/toggle.py to toggle.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/annotation.py to annotation.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/appearance.py to appearance.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/box.py to box.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/benchmark.py to benchmark.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/measurement.py to measurement.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/label.py to label.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/filter.py to filter.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/charge.py to charge.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/cleanup.py to cleanup.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/fedora.py to fedora.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/mutagenesis.py to mutagenesis.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/message.py to message.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/dragging.py to dragging.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/distance.py to distance.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/density.py to density.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/demo.py to demo.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/command.py to command.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/embed/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/embed/wxpymol/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/embed/epymol/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/constants.py to constants.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/Qt/utils.py to utils.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/Qt/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/keywords.py to keywords.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/diagnosing.py to diagnosing.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/creating.py to creating.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/controlling.py to controlling.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/constants_palette.py to constants_palette.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/completing.py to completing.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/commanding.py to commanding.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/rpc.py to rpc.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/querying.py to querying.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/externing.py to externing.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/importing.py to importing.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/shortcut.py to shortcut.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/setting.py to setting.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/helping.py to helping.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/seqalign.py to seqalign.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/colorramping.py to colorramping.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/colorprinting.py to colorprinting.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/cmd.py to cmd.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/pymolhttpd.py to pymolhttpd.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/keyboard.py to keyboard.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/computing.py to computing.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/selector.py to selector.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/xray.py to xray.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/internal.py to internal.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/wizarding.py to wizarding.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/contrib/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/selecting.py to selecting.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/headering.py to headering.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/gui.py to gui.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/fitting.py to fitting.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/feedingback.py to feedingback.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/viewing.py to viewing.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/vfont.py to vfont.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/util.py to util.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/xwin.py to xwin.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/invocation.py to invocation.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/api.py to api.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/plugins/managergui_qt.py to managergui_qt.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/plugins/legacysupport.py to legacysupport.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/plugins/managergui.py to managergui.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/plugins/installation.py to installation.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/plugins/__init__.py to __init__.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/plugins/repository.py to repository.pyc byte-compiling /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/__init__.py to __init__.pyc writing byte-compilation script '/tmp/tmpMHtX5w.py' /usr/local/bin/python2.7 -O /tmp/tmpMHtX5w.py removing /tmp/tmpMHtX5w.py running install_egg_info running egg_info creating pymol.egg-info writing pymol.egg-info/PKG-INFO writing top-level names to pymol.egg-info/top_level.txt writing dependency_links to pymol.egg-info/dependency_links.txt writing manifest file 'pymol.egg-info/SOURCES.txt' reading manifest file 'pymol.egg-info/SOURCES.txt' writing manifest file 'pymol.egg-info/SOURCES.txt' Copying pymol.egg-info to /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol-2.3.0-py2.7.egg-info writing list of installed files to '/construction/science/py-pymol/.PLIST.pymodtmp' creating /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/pymol_path copying LICENSE -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/pymol_path copying data -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/pymol_path/data copying test -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/pymol_path/test copying scripts -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/pymol_path/scripts copying examples -> /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol/pymol_path/examples ===> Creating unique files: Move MAN files needing SUFFIX ===> Creating unique files: Move files needing SUFFIX Move: bin/pymol --> bin/pymol-2.7 Link: @bin/pymol --> bin/pymol-2.7 ====> Compressing man pages (compress-man) if [ -d "/construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol-2.3.0-py2.7.egg-info" ]; then /bin/ls /construction/science/py-pymol/stage/usr/local/lib/python2.7/site-packages/pymol-2.3.0-py2.7.egg-info | while read f; do echo lib/python2.7/site-packages/pymol-2.3.0-py2.7.egg-info/${f} >> /construction/science/py-pymol/.PLIST.mktmp; done; fi; ====> Running Q/A tests (stage-qa) Error: /usr/local/lib/python2.7/site-packages/chempy/champ/_champ.so is linked to /usr/local/lib/libintl.so.8 from devel/gettext-runtime but it is not declared as a dependency Warning: you need USES+=gettext-runtime Error: /usr/local/lib/python2.7/site-packages/pymol/_cmd.so is linked to /usr/local/lib/libexpat.so.1 from textproc/expat2 but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libexpat.so:textproc/expat2 Error: /usr/local/lib/python2.7/site-packages/pymol/_cmd.so is linked to /usr/local/lib/libxcb-dri3.so.0 from x11/libxcb but it is not declared as a dependency Warning: you need USE_XORG+=xcb Error: /usr/local/lib/python2.7/site-packages/pymol/_cmd.so is linked to /usr/local/lib/libxcb-xfixes.so.0 from x11/libxcb but it is not declared as a dependency Warning: you need USE_XORG+=xcb Error: /usr/local/lib/python2.7/site-packages/pymol/_cmd.so is linked to /usr/local/lib/libxcb-present.so.0 from x11/libxcb but it is not declared as a dependency Warning: you need USE_XORG+=xcb Error: /usr/local/lib/python2.7/site-packages/pymol/_cmd.so is linked to /usr/local/lib/libxcb-sync.so.1 from x11/libxcb but it is not declared as a dependency Warning: you need USE_XORG+=xcb Error: /usr/local/lib/python2.7/site-packages/pymol/_cmd.so is linked to /usr/local/lib/libxshmfence.so.1 from x11/libxshmfence but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libxshmfence.so:x11/libxshmfence Error: /usr/local/lib/python2.7/site-packages/pymol/_cmd.so is linked to /usr/local/lib/libXext.so.6 from x11/libXext but it is not declared as a dependency Warning: you need USE_XORG+=xext Error: /usr/local/lib/python2.7/site-packages/pymol/_cmd.so is linked to /usr/local/lib/libXdamage.so.1 from x11/libXdamage but it is not declared as a dependency Warning: you need USE_XORG+=xdamage Error: /usr/local/lib/python2.7/site-packages/pymol/_cmd.so is linked to /usr/local/lib/libXfixes.so.3 from x11/libXfixes but it is not declared as a dependency Warning: you need USE_XORG+=xfixes Error: /usr/local/lib/python2.7/site-packages/pymol/_cmd.so is linked to /usr/local/lib/libX11-xcb.so.1 from x11/libX11 but it is not declared as a dependency Warning: you need USE_XORG+=x11 Error: /usr/local/lib/python2.7/site-packages/pymol/_cmd.so is linked to /usr/local/lib/libX11.so.6 from x11/libX11 but it is not declared as a dependency Warning: you need USE_XORG+=x11 Error: /usr/local/lib/python2.7/site-packages/pymol/_cmd.so is linked to /usr/local/lib/libxcb.so.1 from x11/libxcb but it is not declared as a dependency Warning: you need USE_XORG+=xcb Error: /usr/local/lib/python2.7/site-packages/pymol/_cmd.so is linked to /usr/local/lib/libxcb-glx.so.0 from x11/libxcb but it is not declared as a dependency Warning: you need USE_XORG+=xcb Error: /usr/local/lib/python2.7/site-packages/pymol/_cmd.so is linked to /usr/local/lib/libxcb-dri2.so.0 from x11/libxcb but it is not declared as a dependency Warning: you need USE_XORG+=xcb Error: /usr/local/lib/python2.7/site-packages/pymol/_cmd.so is linked to /usr/local/lib/libXxf86vm.so.1 from x11/libXxf86vm but it is not declared as a dependency Warning: you need USE_XORG+=xxf86vm Error: /usr/local/lib/python2.7/site-packages/pymol/_cmd.so is linked to /usr/local/lib/libdrm.so.2 from graphics/libdrm but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libdrm.so:graphics/libdrm Error: /usr/local/lib/python2.7/site-packages/pymol/_cmd.so is linked to /usr/local/lib/libXau.so.6 from x11/libXau but it is not declared as a dependency Warning: you need USE_XORG+=xau Error: /usr/local/lib/python2.7/site-packages/pymol/_cmd.so is linked to /usr/local/lib/libXdmcp.so.6 from x11/libXdmcp but it is not declared as a dependency Warning: you need USE_XORG+=xdmcp Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for py27-pymol-2.3.0_1 file sizes/checksums [1096]: .......... done packing files [1096]: .......... done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Saturday, 15 FEB 2020 at 17:01:19 UTC Duration: 00:03:27