=> Building science/py-phonopy@py36 Started : Saturday, 7 DEC 2019 at 09:30:28 UTC Platform: 5.7-DEVELOPMENT DragonFly v5.7.0.1123.g96cc8-DEVELOPMENT #17: Thu Dec 5 01:08:49 PST 2019 root@sting.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.7-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.7-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- PYTHON="/usr/local/bin/python3.6" XDG_DATA_HOME=/construction/science/py-phonopy XDG_CONFIG_HOME=/construction/science/py-phonopy HOME=/construction/science/py-phonopy TMPDIR="/tmp" PATH=/construction/science/py-phonopy/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- XDG_DATA_HOME=/construction/science/py-phonopy XDG_CONFIG_HOME=/construction/science/py-phonopy HOME=/construction/science/py-phonopy TMPDIR="/tmp" PATH=/construction/science/py-phonopy/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/science/py-phonopy/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- PYTHON_INCLUDEDIR=include/python3.6m PYTHON_LIBDIR=lib/python3.6 PYTHON_PLATFORM=dragonfly5 PYTHON_SITELIBDIR=lib/python3.6/site-packages PYTHON_SUFFIX=36 PYTHON_VER=3.6 PYTHON_VERSION=python3.6 PYTHON2="@comment " PYTHON3="" OSREL=5.7 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/phonopy" EXAMPLESDIR="share/examples/phonopy" DATADIR="share/phonopy" WWWDIR="www/phonopy" ETCDIR="etc/phonopy" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/phonopy DOCSDIR=/usr/local/share/doc/phonopy EXAMPLESDIR=/usr/local/share/examples/phonopy WWWDIR=/usr/local/www/phonopy ETCDIR=/usr/local/etc/phonopy -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=LiveSystem USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=15 DPORTS_BUILDER= yes DISABLE_LICENSES= yes DEFAULT_VERSIONS= ssl=openssl FORCE_PACKAGE= yes DEVELOPER= yes HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.30.0 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=32 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500709 OSVERSION=9999999 OSREL=5.7 _OSRELEASE=5.7-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> py36-phonopy-2.3.0 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.12.0.txz Installing pkg-1.12.0... Extracting pkg-1.12.0: .......... done ===> py36-phonopy-2.3.0 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py36-phonopy-2.3.0 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- => phonopy-2.3.0.tar.gz doesn't seem to exist in /distfiles/. => Attempting to fetch https://files.pythonhosted.org/packages/source/p/phonopy/phonopy-2.3.0.tar.gz phonopy-2.3.0.tar.gz 6593 kB 49 MBps 00s ===> Fetching all distfiles required by py36-phonopy-2.3.0 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> Fetching all distfiles required by py36-phonopy-2.3.0 for building => SHA256 Checksum OK for phonopy-2.3.0.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> Fetching all distfiles required by py36-phonopy-2.3.0 for building ===> Extracting for py36-phonopy-2.3.0 => SHA256 Checksum OK for phonopy-2.3.0.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for py36-phonopy-2.3.0 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> py36-phonopy-2.3.0 depends on package: py36-numpy>0 - not found ===> Installing existing package /packages/All/py36-numpy-1.16.5_1,1.txz Installing py36-numpy-1.16.5_1,1... `-- Installing gcc8-8.3.0_3... | `-- Installing binutils-2.33.1,1... | | `-- Installing gettext-runtime-0.20.1... | | `-- Installing indexinfo-0.3.1... | | `-- Extracting indexinfo-0.3.1: . done | | `-- Extracting gettext-runtime-0.20.1: .......... done | `-- Extracting binutils-2.33.1,1: .......... done | `-- Installing gmp-6.1.2_1... | `-- Extracting gmp-6.1.2_1: .......... done | `-- Installing mpc-1.1.0_2... | | `-- Installing mpfr-4.0.2... | | `-- Extracting mpfr-4.0.2: .......... done | `-- Extracting mpc-1.1.0_2: ...... done `-- Extracting gcc8-8.3.0_3: .......... done `-- Installing openblas-0.2.20_11,1... `-- Extracting openblas-0.2.20_11,1: .......... done `-- Installing py36-setuptools-41.4.0... | `-- Installing python36-3.6.9_1... | | `-- Installing expat-2.2.8... | | `-- Extracting expat-2.2.8: .......... done | | `-- Installing libffi-3.2.1_3... | | `-- Extracting libffi-3.2.1_3: .......... done | | `-- Installing ncurses-6.1.20190525... | | `-- Extracting ncurses-6.1.20190525: .......... done | | `-- Installing openssl-1.0.2t,1... | | `-- Extracting openssl-1.0.2t,1: .......... done | | `-- Installing readline-8.0.0... | | `-- Extracting readline-8.0.0: .......... done | `-- Extracting python36-3.6.9_1: .......... done `-- Extracting py36-setuptools-41.4.0: .......... done `-- Installing suitesparse-5.4.0_3... | `-- Installing metis-5.1.0_8... | `-- Extracting metis-5.1.0_8: .......... done | `-- Installing tbb-2019.8... | `-- Extracting tbb-2019.8: .......... done `-- Extracting suitesparse-5.4.0_3: .......... done Extracting py36-numpy-1.16.5_1,1: .......... done ===== Message from gcc8-8.3.0_3: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===== Message from openssl-1.0.2t,1: -- Edit /usr/local/openssl/openssl.cnf to fit your needs. -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: OpenSSL 1.0.2 is End-of-Life 2019-12-31 at which time this port will update to 1.1.1 branch. It is scheduled to be removed on or after 2019-12-31. ===== Message from python36-3.6.9_1: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py36-gdbm databases/py-gdbm@py36 py36-sqlite3 databases/py-sqlite3@py36 py36-tkinter x11-toolkits/py-tkinter@py36 ===> py36-phonopy-2.3.0 depends on package: py36-numpy>0 - found ===> Returning to build of py36-phonopy-2.3.0 ===> py36-phonopy-2.3.0 depends on package: py36-h5py>0 - not found ===> Installing existing package /packages/All/py36-h5py-2.10.0.txz Installing py36-h5py-2.10.0... `-- Installing hdf5-1.10.5_2... | `-- Installing hdf-szip-2.1.1... | `-- Extracting hdf-szip-2.1.1: ....... done `-- Extracting hdf5-1.10.5_2: .......... done `-- Installing py36-six-1.12.0... `-- Extracting py36-six-1.12.0: ....... done Extracting py36-h5py-2.10.0: .......... done ===> py36-phonopy-2.3.0 depends on package: py36-h5py>0 - found ===> Returning to build of py36-phonopy-2.3.0 ===> py36-phonopy-2.3.0 depends on package: py36-matplotlib>0 - not found ===> Installing existing package /packages/All/py36-matplotlib-2.2.4_1.txz Installing py36-matplotlib-2.2.4_1... `-- Installing fontconfig-2.12.6,1... | `-- Installing freetype2-2.10.1... | `-- Extracting freetype2-2.10.1: .......... done `-- Extracting fontconfig-2.12.6,1: .......... done Running fc-cache to build fontconfig cache... /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory fc-cache: succeeded `-- Installing png-1.6.37... `-- Extracting png-1.6.37: .......... done `-- Installing py36-cycler-0.10.0... `-- Extracting py36-cycler-0.10.0: ........ done `-- Installing py36-dateutil-2.8.0... `-- Extracting py36-dateutil-2.8.0: .......... done `-- Installing py36-kiwisolver-1.1.0... `-- Extracting py36-kiwisolver-1.1.0: ...... done `-- Installing py36-pyparsing-2.4.5... `-- Extracting py36-pyparsing-2.4.5: ....... done `-- Installing py36-pytz-2019.3,1... `-- Extracting py36-pytz-2019.3,1: .......... done `-- Installing py36-tkinter-3.6.9_6... | `-- Installing tcl86-8.6.10... | `-- Extracting tcl86-8.6.10: .......... done | `-- Installing tk86-8.6.10_1... | | `-- Installing libX11-1.6.9,1... | | `-- Installing libXau-1.0.9... | | `-- Extracting libXau-1.0.9: .......... done | | `-- Installing libXdmcp-1.1.3... | | | `-- Installing xorgproto-2019.2... | | | `-- Extracting xorgproto-2019.2: .......... done | | `-- Extracting libXdmcp-1.1.3: ...... done | | `-- Installing libxcb-1.13.1... | | | `-- Installing libpthread-stubs-0.4... | | | `-- Extracting libpthread-stubs-0.4: . done | | | `-- Installing libxml2-2.9.10... | | | `-- Extracting libxml2-2.9.10: .......... done | | `-- Extracting libxcb-1.13.1: .......... done | | `-- Extracting libX11-1.6.9,1: .......... done | | `-- Installing libXScrnSaver-1.2.3_2... | | `-- Installing libXext-1.3.4,1... | | `-- Extracting libXext-1.3.4,1: .......... done | | `-- Extracting libXScrnSaver-1.2.3_2: .......... done | | `-- Installing libXft-2.3.3... | | `-- Installing libXrender-0.9.10_2... | | `-- Extracting libXrender-0.9.10_2: ....... done | | `-- Extracting libXft-2.3.3: ......... done | `-- Extracting tk86-8.6.10_1: .......... done `-- Extracting py36-tkinter-3.6.9_6: ..... done `-- Installing py36-tornado-5.1.1... `-- Extracting py36-tornado-5.1.1: .......... done Extracting py36-matplotlib-2.2.4_1: .......... done ===== Message from freetype2-2.10.1: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/site/index.html, if documentation was installed). ===> py36-phonopy-2.3.0 depends on package: py36-matplotlib>0 - found ===> Returning to build of py36-phonopy-2.3.0 ===> py36-phonopy-2.3.0 depends on package: py36-yaml>0 - not found ===> Installing existing package /packages/All/py36-yaml-5.2.txz Installing py36-yaml-5.2... Extracting py36-yaml-5.2: .......... done ===> py36-phonopy-2.3.0 depends on package: py36-yaml>0 - found ===> Returning to build of py36-phonopy-2.3.0 ===> py36-phonopy-2.3.0 depends on executable: cython-3.6 - not found ===> Installing existing package /packages/All/py36-cython-0.29.13.txz Installing py36-cython-0.29.13... Extracting py36-cython-0.29.13: .......... done ===> py36-phonopy-2.3.0 depends on executable: cython-3.6 - found ===> Returning to build of py36-phonopy-2.3.0 ===> py36-phonopy-2.3.0 depends on package: py36-setuptools>0 - found ===> py36-phonopy-2.3.0 depends on file: /usr/local/bin/python3.6 - found -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for py36-phonopy-2.3.0 setuptools is used. running config -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for py36-phonopy-2.3.0 setuptools is used. running build running build_py creating build creating build/lib.dragonfly-5.7-SYNTH-x86_64-3.6 creating build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy copying phonopy/api_gruneisen.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy copying phonopy/version.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy copying phonopy/api_phonopy.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy copying phonopy/units.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy copying phonopy/file_IO.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy copying phonopy/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy copying phonopy/api_qha.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy creating build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/cui copying phonopy/cui/load_helper.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/cui copying phonopy/cui/load.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/cui copying phonopy/cui/collect_cell_info.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/cui copying phonopy/cui/show_symmetry.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/cui copying phonopy/cui/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/cui copying phonopy/cui/phonopy_argparse.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/cui copying phonopy/cui/settings.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/cui creating build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/gruneisen copying phonopy/gruneisen/thermal_properties.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/gruneisen copying phonopy/gruneisen/band_structure.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/gruneisen copying phonopy/gruneisen/core.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/gruneisen copying phonopy/gruneisen/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/gruneisen copying phonopy/gruneisen/mesh.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/gruneisen creating build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/harmonic copying phonopy/harmonic/dynmat_to_fc.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/harmonic copying phonopy/harmonic/dynamical_matrix.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/harmonic copying phonopy/harmonic/force_constants.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/harmonic copying phonopy/harmonic/forces.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/harmonic copying phonopy/harmonic/derivative_dynmat.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/harmonic copying phonopy/harmonic/displacement.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/harmonic copying phonopy/harmonic/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/harmonic creating build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/interface copying phonopy/interface/wien2k.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/interface copying phonopy/interface/calculator.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/interface copying phonopy/interface/vasp.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/interface copying phonopy/interface/FHIaims.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/interface copying phonopy/interface/phonopy_yaml.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/interface copying phonopy/interface/cp2k.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/interface copying phonopy/interface/elk.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/interface copying phonopy/interface/turbomole.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/interface copying phonopy/interface/dftbp.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/interface copying phonopy/interface/crystal.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/interface copying phonopy/interface/abinit.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/interface copying phonopy/interface/cif.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/interface copying phonopy/interface/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/interface copying phonopy/interface/alm.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/interface copying phonopy/interface/siesta.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/interface copying phonopy/interface/qe.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/interface copying phonopy/interface/fc_calculator.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/interface copying phonopy/interface/hiphive.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/interface creating build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/phonon copying phonopy/phonon/group_velocity.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/phonon copying phonopy/phonon/modulation.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/phonon copying phonopy/phonon/tetrahedron_mesh.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/phonon copying phonopy/phonon/random_displacements.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/phonon copying phonopy/phonon/animation.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/phonon copying phonopy/phonon/dos.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/phonon copying phonopy/phonon/thermal_displacement.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/phonon copying phonopy/phonon/thermal_properties.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/phonon copying phonopy/phonon/irreps.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/phonon copying phonopy/phonon/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/phonon copying phonopy/phonon/degeneracy.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/phonon copying phonopy/phonon/qpoints.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/phonon copying phonopy/phonon/moment.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/phonon copying phonopy/phonon/band_structure.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/phonon copying phonopy/phonon/mesh.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/phonon creating build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/qha copying phonopy/qha/core.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/qha copying phonopy/qha/electron.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/qha copying phonopy/qha/eos.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/qha copying phonopy/qha/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/qha creating build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/spectrum copying phonopy/spectrum/dynamic_structure_factor.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/spectrum copying phonopy/spectrum/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/spectrum copying phonopy/spectrum/velocity.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/spectrum creating build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/structure copying phonopy/structure/cells.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/structure copying phonopy/structure/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/structure copying phonopy/structure/grid_points.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/structure copying phonopy/structure/spglib.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/structure copying phonopy/structure/brillouin_zone.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/structure copying phonopy/structure/symmetry.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/structure copying phonopy/structure/tetrahedron_method.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/structure copying phonopy/structure/atoms.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/structure creating build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/unfolding copying phonopy/unfolding/core.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/unfolding copying phonopy/unfolding/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/unfolding running build_ext building 'phonopy._phonopy' extension creating build/temp.dragonfly-5.7-SYNTH-x86_64-3.6 creating build/temp.dragonfly-5.7-SYNTH-x86_64-3.6/c creating build/temp.dragonfly-5.7-SYNTH-x86_64-3.6/c/harmonic creating build/temp.dragonfly-5.7-SYNTH-x86_64-3.6/c/spglib creating build/temp.dragonfly-5.7-SYNTH-x86_64-3.6/c/kspclib cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Ic/harmonic_h -Ic/kspclib_h -Ic/spglib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/_phonopy.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-3.6/c/_phonopy.o In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from c/_phonopy.c:40: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Ic/harmonic_h -Ic/kspclib_h -Ic/spglib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/harmonic/dynmat.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-3.6/c/harmonic/dynmat.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Ic/harmonic_h -Ic/kspclib_h -Ic/spglib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/harmonic/derivative_dynmat.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-3.6/c/harmonic/derivative_dynmat.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Ic/harmonic_h -Ic/kspclib_h -Ic/spglib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/spglib/kgrid.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-3.6/c/spglib/kgrid.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Ic/harmonic_h -Ic/kspclib_h -Ic/spglib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/kspclib/tetrahedron_method.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-3.6/c/kspclib/tetrahedron_method.o cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-SYNTH-x86_64-3.6/c/_phonopy.o build/temp.dragonfly-5.7-SYNTH-x86_64-3.6/c/harmonic/dynmat.o build/temp.dragonfly-5.7-SYNTH-x86_64-3.6/c/harmonic/derivative_dynmat.o build/temp.dragonfly-5.7-SYNTH-x86_64-3.6/c/spglib/kgrid.o build/temp.dragonfly-5.7-SYNTH-x86_64-3.6/c/kspclib/tetrahedron_method.o -L/usr/local/lib -lpython3.6m -o build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/_phonopy.so building 'phonopy._spglib' extension cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Ic/spglib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/_spglib.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-3.6/c/_spglib.o In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from c/_spglib.c:38: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Ic/spglib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/spglib/arithmetic.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-3.6/c/spglib/arithmetic.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Ic/spglib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/spglib/cell.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-3.6/c/spglib/cell.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Ic/spglib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/spglib/delaunay.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-3.6/c/spglib/delaunay.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Ic/spglib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/spglib/determination.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-3.6/c/spglib/determination.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Ic/spglib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/spglib/hall_symbol.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-3.6/c/spglib/hall_symbol.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Ic/spglib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/spglib/kgrid.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-3.6/c/spglib/kgrid.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Ic/spglib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/spglib/kpoint.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-3.6/c/spglib/kpoint.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Ic/spglib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/spglib/mathfunc.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-3.6/c/spglib/mathfunc.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Ic/spglib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/spglib/niggli.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-3.6/c/spglib/niggli.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Ic/spglib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/spglib/overlap.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-3.6/c/spglib/overlap.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Ic/spglib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/spglib/pointgroup.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-3.6/c/spglib/pointgroup.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Ic/spglib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/spglib/primitive.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-3.6/c/spglib/primitive.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Ic/spglib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/spglib/refinement.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-3.6/c/spglib/refinement.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Ic/spglib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/spglib/sitesym_database.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-3.6/c/spglib/sitesym_database.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Ic/spglib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/spglib/site_symmetry.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-3.6/c/spglib/site_symmetry.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Ic/spglib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/spglib/spacegroup.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-3.6/c/spglib/spacegroup.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Ic/spglib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/spglib/spg_database.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-3.6/c/spglib/spg_database.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Ic/spglib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/spglib/spglib.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-3.6/c/spglib/spglib.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Ic/spglib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/spglib/spin.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-3.6/c/spglib/spin.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Ic/spglib_h -I/usr/local/lib/python3.6/site-packages/numpy/core/include -I/usr/local/include/python3.6m -c c/spglib/symmetry.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-3.6/c/spglib/symmetry.o cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-SYNTH-x86_64-3.6/c/_spglib.o build/temp.dragonfly-5.7-SYNTH-x86_64-3.6/c/spglib/arithmetic.o build/temp.dragonfly-5.7-SYNTH-x86_64-3.6/c/spglib/cell.o build/temp.dragonfly-5.7-SYNTH-x86_64-3.6/c/spglib/delaunay.o build/temp.dragonfly-5.7-SYNTH-x86_64-3.6/c/spglib/determination.o build/temp.dragonfly-5.7-SYNTH-x86_64-3.6/c/spglib/hall_symbol.o build/temp.dragonfly-5.7-SYNTH-x86_64-3.6/c/spglib/kgrid.o build/temp.dragonfly-5.7-SYNTH-x86_64-3.6/c/spglib/kpoint.o build/temp.dragonfly-5.7-SYNTH-x86_64-3.6/c/spglib/mathfunc.o build/temp.dragonfly-5.7-SYNTH-x86_64-3.6/c/spglib/niggli.o build/temp.dragonfly-5.7-SYNTH-x86_64-3.6/c/spglib/overlap.o build/temp.dragonfly-5.7-SYNTH-x86_64-3.6/c/spglib/pointgroup.o build/temp.dragonfly-5.7-SYNTH-x86_64-3.6/c/spglib/primitive.o build/temp.dragonfly-5.7-SYNTH-x86_64-3.6/c/spglib/refinement.o build/temp.dragonfly-5.7-SYNTH-x86_64-3.6/c/spglib/sitesym_database.o build/temp.dragonfly-5.7-SYNTH-x86_64-3.6/c/spglib/site_symmetry.o build/temp.dragonfly-5.7-SYNTH-x86_64-3.6/c/spglib/spacegroup.o build/temp.dragonfly-5.7-SYNTH-x86_64-3.6/c/spglib/spg_database.o build/temp.dragonfly-5.7-SYNTH-x86_64-3.6/c/spglib/spglib.o build/temp.dragonfly-5.7-SYNTH-x86_64-3.6/c/spglib/spin.o build/temp.dragonfly-5.7-SYNTH-x86_64-3.6/c/spglib/symmetry.o -L/usr/local/lib -lpython3.6m -o build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/_spglib.so running build_scripts creating build/scripts-3.6 copying and adjusting scripts/phonopy -> build/scripts-3.6 copying and adjusting scripts/phonopy-qha -> build/scripts-3.6 copying and adjusting scripts/phonopy-FHI-aims -> build/scripts-3.6 copying and adjusting scripts/phonopy-bandplot -> build/scripts-3.6 copying and adjusting scripts/phonopy-vasp-born -> build/scripts-3.6 copying and adjusting scripts/phonopy-vasp-efe -> build/scripts-3.6 copying and adjusting scripts/phonopy-crystal-born -> build/scripts-3.6 copying and adjusting scripts/phonopy-propplot -> build/scripts-3.6 copying and adjusting scripts/phonopy-tdplot -> build/scripts-3.6 copying and adjusting scripts/phonopy-dispmanager -> build/scripts-3.6 copying and adjusting scripts/phonopy-gruneisen -> build/scripts-3.6 copying and adjusting scripts/phonopy-gruneisenplot -> build/scripts-3.6 copying and adjusting scripts/phonopy-pdosplot -> build/scripts-3.6 changing mode of build/scripts-3.6/phonopy from 644 to 755 changing mode of build/scripts-3.6/phonopy-qha from 644 to 755 changing mode of build/scripts-3.6/phonopy-FHI-aims from 644 to 755 changing mode of build/scripts-3.6/phonopy-bandplot from 644 to 755 changing mode of build/scripts-3.6/phonopy-vasp-born from 644 to 755 changing mode of build/scripts-3.6/phonopy-vasp-efe from 644 to 755 changing mode of build/scripts-3.6/phonopy-crystal-born from 644 to 755 changing mode of build/scripts-3.6/phonopy-propplot from 644 to 755 changing mode of build/scripts-3.6/phonopy-tdplot from 644 to 755 changing mode of build/scripts-3.6/phonopy-dispmanager from 644 to 755 changing mode of build/scripts-3.6/phonopy-gruneisen from 644 to 755 changing mode of build/scripts-3.6/phonopy-gruneisenplot from 644 to 755 changing mode of build/scripts-3.6/phonopy-pdosplot from 644 to 755 -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- ===> py36-phonopy-2.3.0 depends on package: py36-numpy>0 - found ===> py36-phonopy-2.3.0 depends on package: py36-h5py>0 - found ===> py36-phonopy-2.3.0 depends on package: py36-matplotlib>0 - found ===> py36-phonopy-2.3.0 depends on package: py36-yaml>0 - found ===> py36-phonopy-2.3.0 depends on package: py36-setuptools>0 - found ===> py36-phonopy-2.3.0 depends on file: /usr/local/bin/python3.6 - found -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for py36-phonopy-2.3.0 ===> Generating temporary packing list setuptools is used. running install running build running build_py running build_ext running build_scripts running install_lib creating /construction/science/py-phonopy/stage/usr/local/lib/python3.6 creating /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages creating /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/_spglib.so -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/api_gruneisen.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/api_qha.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/file_IO.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/version.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/units.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy creating /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/cui copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/cui/__init__.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/cui copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/cui/load.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/cui copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/cui/show_symmetry.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/cui copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/cui/collect_cell_info.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/cui copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/cui/load_helper.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/cui copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/cui/settings.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/cui copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/cui/phonopy_argparse.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/cui copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/__init__.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/api_phonopy.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy creating /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/unfolding copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/unfolding/__init__.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/unfolding copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/unfolding/core.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/unfolding creating /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/harmonic copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/harmonic/displacement.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/harmonic copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/harmonic/__init__.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/harmonic copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/harmonic/dynmat_to_fc.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/harmonic copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/harmonic/forces.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/harmonic copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/harmonic/dynamical_matrix.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/harmonic copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/harmonic/force_constants.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/harmonic copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/harmonic/derivative_dynmat.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/harmonic creating /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/qha copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/qha/electron.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/qha copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/qha/__init__.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/qha copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/qha/eos.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/qha copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/qha/core.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/qha copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/_phonopy.so -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy creating /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/gruneisen copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/gruneisen/band_structure.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/gruneisen copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/gruneisen/thermal_properties.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/gruneisen copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/gruneisen/mesh.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/gruneisen copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/gruneisen/__init__.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/gruneisen copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/gruneisen/core.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/gruneisen creating /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/interface/abinit.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/interface/turbomole.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/interface/siesta.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/interface/alm.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/interface/__init__.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/interface/dftbp.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/interface/FHIaims.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/interface/wien2k.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/interface/cif.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/interface/fc_calculator.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/interface/hiphive.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/interface/qe.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/interface/elk.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/interface/cp2k.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/interface/phonopy_yaml.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/interface/crystal.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/interface/calculator.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/interface/vasp.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface creating /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/phonon/irreps.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/phonon/moment.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/phonon/qpoints.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/phonon/tetrahedron_mesh.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/phonon/random_displacements.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/phonon/degeneracy.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/phonon/band_structure.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/phonon/mesh.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/phonon/group_velocity.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/phonon/animation.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/phonon/thermal_properties.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/phonon/thermal_displacement.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/phonon/__init__.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/phonon/dos.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/phonon/modulation.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon creating /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/structure copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/structure/symmetry.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/structure copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/structure/spglib.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/structure copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/structure/grid_points.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/structure copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/structure/__init__.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/structure copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/structure/brillouin_zone.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/structure copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/structure/tetrahedron_method.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/structure copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/structure/cells.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/structure copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/structure/atoms.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/structure creating /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/spectrum copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/spectrum/dynamic_structure_factor.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/spectrum copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/spectrum/__init__.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/spectrum copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/phonopy/spectrum/velocity.py -> /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/spectrum byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/api_gruneisen.py to api_gruneisen.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/api_qha.py to api_qha.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/file_IO.py to file_IO.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/version.py to version.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/units.py to units.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/cui/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/cui/load.py to load.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/cui/show_symmetry.py to show_symmetry.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/cui/collect_cell_info.py to collect_cell_info.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/cui/load_helper.py to load_helper.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/cui/settings.py to settings.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/cui/phonopy_argparse.py to phonopy_argparse.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/api_phonopy.py to api_phonopy.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/unfolding/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/unfolding/core.py to core.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/harmonic/displacement.py to displacement.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/harmonic/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/harmonic/dynmat_to_fc.py to dynmat_to_fc.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/harmonic/forces.py to forces.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/harmonic/dynamical_matrix.py to dynamical_matrix.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/harmonic/force_constants.py to force_constants.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/harmonic/derivative_dynmat.py to derivative_dynmat.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/qha/electron.py to electron.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/qha/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/qha/eos.py to eos.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/qha/core.py to core.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/gruneisen/band_structure.py to band_structure.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/gruneisen/thermal_properties.py to thermal_properties.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/gruneisen/mesh.py to mesh.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/gruneisen/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/gruneisen/core.py to core.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface/abinit.py to abinit.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface/turbomole.py to turbomole.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface/siesta.py to siesta.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface/alm.py to alm.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface/dftbp.py to dftbp.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface/FHIaims.py to FHIaims.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface/wien2k.py to wien2k.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface/cif.py to cif.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface/fc_calculator.py to fc_calculator.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface/hiphive.py to hiphive.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface/qe.py to qe.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface/elk.py to elk.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface/cp2k.py to cp2k.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface/phonopy_yaml.py to phonopy_yaml.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface/crystal.py to crystal.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface/calculator.py to calculator.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/interface/vasp.py to vasp.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon/irreps.py to irreps.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon/moment.py to moment.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon/qpoints.py to qpoints.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon/tetrahedron_mesh.py to tetrahedron_mesh.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon/random_displacements.py to random_displacements.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon/degeneracy.py to degeneracy.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon/band_structure.py to band_structure.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon/mesh.py to mesh.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon/group_velocity.py to group_velocity.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon/animation.py to animation.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon/thermal_properties.py to thermal_properties.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon/thermal_displacement.py to thermal_displacement.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon/dos.py to dos.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/phonon/modulation.py to modulation.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/structure/symmetry.py to symmetry.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/structure/spglib.py to spglib.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/structure/grid_points.py to grid_points.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/structure/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/structure/brillouin_zone.py to brillouin_zone.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/structure/tetrahedron_method.py to tetrahedron_method.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/structure/cells.py to cells.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/structure/atoms.py to atoms.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/spectrum/dynamic_structure_factor.py to dynamic_structure_factor.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/spectrum/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy/spectrum/velocity.py to velocity.cpython-36.pyc writing byte-compilation script '/tmp/tmp528oy2u1.py' /usr/local/bin/python3.6 /tmp/tmp528oy2u1.py removing /tmp/tmp528oy2u1.py running install_egg_info running egg_info writing phonopy.egg-info/PKG-INFO writing dependency_links to phonopy.egg-info/dependency_links.txt writing requirements to phonopy.egg-info/requires.txt writing top-level names to phonopy.egg-info/top_level.txt reading manifest file 'phonopy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '*.pyc' found under directory 'test' writing manifest file 'phonopy.egg-info/SOURCES.txt' Copying phonopy.egg-info to /construction/science/py-phonopy/stage/usr/local/lib/python3.6/site-packages/phonopy-2.3.0-py3.6.egg-info running install_scripts copying build/scripts-3.6/phonopy-pdosplot -> /construction/science/py-phonopy/stage/usr/local/bin copying build/scripts-3.6/phonopy-qha -> /construction/science/py-phonopy/stage/usr/local/bin copying build/scripts-3.6/phonopy-vasp-born -> /construction/science/py-phonopy/stage/usr/local/bin copying build/scripts-3.6/phonopy-tdplot -> /construction/science/py-phonopy/stage/usr/local/bin copying build/scripts-3.6/phonopy-dispmanager -> /construction/science/py-phonopy/stage/usr/local/bin copying build/scripts-3.6/phonopy-FHI-aims -> /construction/science/py-phonopy/stage/usr/local/bin copying build/scripts-3.6/phonopy-vasp-efe -> /construction/science/py-phonopy/stage/usr/local/bin copying build/scripts-3.6/phonopy -> /construction/science/py-phonopy/stage/usr/local/bin copying build/scripts-3.6/phonopy-crystal-born -> /construction/science/py-phonopy/stage/usr/local/bin copying build/scripts-3.6/phonopy-gruneisen -> /construction/science/py-phonopy/stage/usr/local/bin copying build/scripts-3.6/phonopy-bandplot -> /construction/science/py-phonopy/stage/usr/local/bin copying build/scripts-3.6/phonopy-propplot -> /construction/science/py-phonopy/stage/usr/local/bin copying build/scripts-3.6/phonopy-gruneisenplot -> /construction/science/py-phonopy/stage/usr/local/bin changing mode of /construction/science/py-phonopy/stage/usr/local/bin/phonopy-pdosplot to 755 changing mode of /construction/science/py-phonopy/stage/usr/local/bin/phonopy-qha to 755 changing mode of /construction/science/py-phonopy/stage/usr/local/bin/phonopy-vasp-born to 755 changing mode of /construction/science/py-phonopy/stage/usr/local/bin/phonopy-tdplot to 755 changing mode of /construction/science/py-phonopy/stage/usr/local/bin/phonopy-dispmanager to 755 changing mode of /construction/science/py-phonopy/stage/usr/local/bin/phonopy-FHI-aims to 755 changing mode of /construction/science/py-phonopy/stage/usr/local/bin/phonopy-vasp-efe to 755 changing mode of /construction/science/py-phonopy/stage/usr/local/bin/phonopy to 755 changing mode of /construction/science/py-phonopy/stage/usr/local/bin/phonopy-crystal-born to 755 changing mode of /construction/science/py-phonopy/stage/usr/local/bin/phonopy-gruneisen to 755 changing mode of /construction/science/py-phonopy/stage/usr/local/bin/phonopy-bandplot to 755 changing mode of /construction/science/py-phonopy/stage/usr/local/bin/phonopy-propplot to 755 changing mode of /construction/science/py-phonopy/stage/usr/local/bin/phonopy-gruneisenplot to 755 writing list of installed files to '/construction/science/py-phonopy/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Error: /usr/local/lib/python3.6/site-packages/phonopy/_phonopy.so is linked to /usr/local/lib/libintl.so.8 from devel/gettext-runtime but it is not declared as a dependency Warning: you need USES+=gettext-runtime Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for py36-phonopy-2.3.0 file sizes/checksums [248]: ... done packing files [248]: ... done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Saturday, 7 DEC 2019 at 09:31:41 UTC Duration: 00:01:12