=> Building science/py-phono3py@py27 Started : Thursday, 20 FEB 2020 at 10:14:52 UTC Platform: 5.7-DEVELOPMENT DragonFly v5.7.0.1432.g9cd86-DEVELOPMENT #23: Thu Feb 13 14:43:04 PST 2020 root@sting.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.7-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.7-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/construction/science/py-phono3py XDG_CONFIG_HOME=/construction/science/py-phono3py HOME=/construction/science/py-phono3py TMPDIR="/tmp" PATH=/construction/science/py-phono3py/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 CMAKE_PREFIX_PATH="/usr/local" -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- XDG_DATA_HOME=/construction/science/py-phono3py XDG_CONFIG_HOME=/construction/science/py-phono3py HOME=/construction/science/py-phono3py TMPDIR="/tmp" PATH=/construction/science/py-phono3py/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -L/usr/local/lib " LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS=" -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/science/py-phono3py/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=dragonfly5 PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_SUFFIX=27 PYTHON_VER=2.7 PYTHON_VERSION=python2.7 PYTHON2="" PYTHON3="@comment " OSREL=5.7 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/phono3py" EXAMPLESDIR="share/examples/phono3py" DATADIR="share/phono3py" WWWDIR="www/phono3py" ETCDIR="etc/phono3py" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/phono3py DOCSDIR=/usr/local/share/doc/phono3py EXAMPLESDIR=/usr/local/share/examples/phono3py WWWDIR=/usr/local/www/phono3py ETCDIR=/usr/local/etc/phono3py -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=LiveSystem USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=15 DEVELOPER=1 DPORTS_BUILDER= yes DISABLE_LICENSES= yes DEFAULT_VERSIONS= ssl=openssl FORCE_PACKAGE= yes DEVELOPER= yes HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.30.1 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=32 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500709 OSVERSION=9999999 OSREL=5.7 _OSRELEASE=5.7-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> py27-phono3py-1.13.3.27_5 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.12.0_1.txz Installing pkg-1.12.0_1... Extracting pkg-1.12.0_1: .......... done ===> py27-phono3py-1.13.3.27_5 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py27-phono3py-1.13.3.27_5 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- ===> py27-phono3py-1.13.3.27_5 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py27-phono3py-1.13.3.27_5 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> py27-phono3py-1.13.3.27_5 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py27-phono3py-1.13.3.27_5 for building => SHA256 Checksum OK for phono3py-1.13.3.27.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> py27-phono3py-1.13.3.27_5 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py27-phono3py-1.13.3.27_5 for building ===> Extracting for py27-phono3py-1.13.3.27_5 => SHA256 Checksum OK for phono3py-1.13.3.27.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for py27-phono3py-1.13.3.27_5 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> py27-phono3py-1.13.3.27_5 depends on package: py27-numpy>=1.15,1<1.19,1 - not found ===> Installing existing package /packages/All/py27-numpy-1.16.5_4,1.txz Installing py27-numpy-1.16.5_4,1... `-- Installing gcc8-8.3.0_3... | `-- Installing binutils-2.33.1_2,1... | | `-- Installing gettext-runtime-0.20.1... | | `-- Installing indexinfo-0.3.1... | | `-- Extracting indexinfo-0.3.1: . done | | `-- Extracting gettext-runtime-0.20.1: .......... done | `-- Extracting binutils-2.33.1_2,1: .......... done | `-- Installing gmp-6.1.2_1... | `-- Extracting gmp-6.1.2_1: .......... done | `-- Installing mpc-1.1.0_2... | | `-- Installing mpfr-4.0.2... | | `-- Extracting mpfr-4.0.2: .......... done | `-- Extracting mpc-1.1.0_2: ...... done `-- Extracting gcc8-8.3.0_3: .......... done `-- Installing openblas-0.3.7_2,1... `-- Extracting openblas-0.3.7_2,1: .......... done `-- Installing py27-setuptools-44.0.0... | `-- Installing python27-2.7.17_1... | | `-- Installing expat-2.2.8... | | `-- Extracting expat-2.2.8: .......... done | | `-- Installing libffi-3.2.1_3... | | `-- Extracting libffi-3.2.1_3: .......... done | | `-- Installing ncurses-6.1.20190525... | | `-- Extracting ncurses-6.1.20190525: .......... done | | `-- Installing openssl-1.1.1d,1... | | `-- Extracting openssl-1.1.1d,1: .......... done | | `-- Installing readline-8.0.1... | | `-- Extracting readline-8.0.1: .......... done | `-- Extracting python27-2.7.17_1: .......... done `-- Extracting py27-setuptools-44.0.0: .......... done `-- Installing suitesparse-5.4.0_5... | `-- Installing metis-5.1.0_8... | `-- Extracting metis-5.1.0_8: .......... done | `-- Installing tbb-2020.1... | `-- Extracting tbb-2020.1: .......... done `-- Extracting suitesparse-5.4.0_5: .......... done Extracting py27-numpy-1.16.5_4,1: .......... done ===== Message from gcc8-8.3.0_3: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===== Message from python27-2.7.17_1: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter ===== Message from py27-setuptools-44.0.0: -- Only /usr/local/bin/easy_install-2.7 script has been installed since Python 2.7 is not the default Python version. ===> py27-phono3py-1.13.3.27_5 depends on package: py27-numpy>=1.15,1<1.19,1 - found ===> Returning to build of py27-phono3py-1.13.3.27_5 ===> py27-phono3py-1.13.3.27_5 depends on package: py27-h5py>0 - not found ===> Installing existing package /packages/All/py27-h5py-2.10.0.txz Installing py27-h5py-2.10.0... `-- Installing hdf5-1.10.6... | `-- Installing hdf-szip-2.1.1... | `-- Extracting hdf-szip-2.1.1: ....... done `-- Extracting hdf5-1.10.6: .......... done `-- Installing py27-six-1.14.0... `-- Extracting py27-six-1.14.0: ....... done Extracting py27-h5py-2.10.0: .......... done ===> py27-phono3py-1.13.3.27_5 depends on package: py27-h5py>0 - found ===> Returning to build of py27-phono3py-1.13.3.27_5 ===> py27-phono3py-1.13.3.27_5 depends on package: py27-matplotlib>0 - not found ===> Installing existing package /packages/All/py27-matplotlib-2.2.4_1.txz Installing py27-matplotlib-2.2.4_1... `-- Installing atk-2.28.1... | `-- Installing glib-2.56.3_7,1... | | `-- Installing libiconv-1.14_11... | | `-- Extracting libiconv-1.14_11: .......... done | | `-- Installing libxml2-2.9.10... | | `-- Extracting libxml2-2.9.10: .......... done | | `-- Installing pcre-8.43_2... | | `-- Extracting pcre-8.43_2: .......... done | | `-- Installing python37-3.7.6... | | `-- Extracting python37-3.7.6: .......... done | `-- Extracting glib-2.56.3_7,1: .......... done No schema files found: doing nothing. `-- Extracting atk-2.28.1: .......... done `-- Installing cairo-1.16.0,2... | `-- Installing fontconfig-2.12.6,1... | | `-- Installing freetype2-2.10.1... | | `-- Extracting freetype2-2.10.1: .......... done | `-- Extracting fontconfig-2.12.6,1: .......... done Running fc-cache to build fontconfig cache... /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory fc-cache: succeeded | `-- Installing libX11-1.6.9,1... | | `-- Installing libXau-1.0.9... | | `-- Extracting libXau-1.0.9: .......... done | | `-- Installing libXdmcp-1.1.3... | | `-- Installing xorgproto-2019.2... | | `-- Extracting xorgproto-2019.2: .......... done | | `-- Extracting libXdmcp-1.1.3: ...... done | | `-- Installing libxcb-1.13.1... | | `-- Installing libpthread-stubs-0.4... | | `-- Extracting libpthread-stubs-0.4: .... done | | `-- Extracting libxcb-1.13.1: .......... done | `-- Extracting libX11-1.6.9,1: .......... done | `-- Installing libXext-1.3.4,1... | `-- Extracting libXext-1.3.4,1: .......... done | `-- Installing libXrender-0.9.10_2... | `-- Extracting libXrender-0.9.10_2: ....... done | `-- Installing mesa-libs-18.3.2_3... | | `-- Installing libXdamage-1.1.5... | | `-- Installing libXfixes-5.0.3_2... | | `-- Extracting libXfixes-5.0.3_2: ....... done | | `-- Extracting libXdamage-1.1.5: ...... done | | `-- Installing libXrandr-1.5.2... | | `-- Extracting libXrandr-1.5.2: .......... done | | `-- Installing libXxf86vm-1.1.4_3... | | `-- Extracting libXxf86vm-1.1.4_3: .......... done | | `-- Installing libdrm-2.4.100... | | `-- Installing libpciaccess-0.16... | | | `-- Installing pciids-20200125... | | | `-- Extracting pciids-20200125: ..... done | | `-- Extracting libpciaccess-0.16: ...... done | | `-- Extracting libdrm-2.4.100: .......... done | | `-- Installing libelf-0.8.13_3... | | `-- Extracting libelf-0.8.13_3: .......... done | | `-- Installing libxshmfence-1.3... | | `-- Extracting libxshmfence-1.3: ...... done | | `-- Installing wayland-1.16.0... | | `-- Extracting wayland-1.16.0: .......... done | `-- Extracting mesa-libs-18.3.2_3: .......... done | `-- Installing pixman-0.38.4... | `-- Extracting pixman-0.38.4: ....... done | `-- Installing png-1.6.37... | `-- Extracting png-1.6.37: .......... done `-- Extracting cairo-1.16.0,2: .......... done `-- Installing gdk-pixbuf2-2.40.0... | `-- Installing jpeg-turbo-2.0.4... | `-- Extracting jpeg-turbo-2.0.4: .......... done | `-- Installing shared-mime-info-1.10_2... | `-- Extracting shared-mime-info-1.10_2: .......... done | `-- Installing tiff-4.1.0... | | `-- Installing jbigkit-2.1_1... | | `-- Extracting jbigkit-2.1_1: .......... done | `-- Extracting tiff-4.1.0: .......... done `-- Extracting gdk-pixbuf2-2.40.0: .......... done `-- Installing gtk2-2.24.32... | `-- Installing cups-2.2.12... | | `-- Installing avahi-app-0.7_2... | | `-- Installing dbus-1.12.16... | | | `-- Installing libICE-1.0.10,1... | | | `-- Extracting libICE-1.0.10,1: .......... done | | | `-- Installing libSM-1.2.3,1... | | | `-- Extracting libSM-1.2.3,1: ........ done ===> Creating groups. Creating group 'messagebus' with gid '556'. ===> Creating users Creating user 'messagebus' with uid '556'. | | `-- Extracting dbus-1.12.16: ......... done | | `-- Installing dbus-glib-0.110... | | `-- Extracting dbus-glib-0.110: .......... done | | `-- Installing gdbm-1.18.1_1... | | `-- Extracting gdbm-1.18.1_1: .......... done | | `-- Installing gnome_subr-1.0... | | `-- Extracting gnome_subr-1.0: . done | | `-- Installing gobject-introspection-1.56.1,1... | | `-- Extracting gobject-introspection-1.56.1,1: .......... done | | `-- Installing libdaemon-0.14_1... | | `-- Extracting libdaemon-0.14_1: .......... done ===> Creating groups. Creating group 'avahi' with gid '558'. ===> Creating users Creating user 'avahi' with uid '558'. | | `-- Extracting avahi-app-0.7_2: .......... done | | `-- Installing gnutls-3.6.12... | | `-- Installing ca_root_nss-3.50... | | `-- Extracting ca_root_nss-3.50: ..... done | | `-- Installing libidn2-2.3.0_1... | | | `-- Installing libunistring-0.9.10_1... | | | `-- Extracting libunistring-0.9.10_1: .......... done | | `-- Extracting libidn2-2.3.0_1: .......... done | | `-- Installing libtasn1-4.15.0... | | `-- Extracting libtasn1-4.15.0: .......... done | | `-- Installing nettle-3.5.1_1... | | `-- Extracting nettle-3.5.1_1: .......... done | | `-- Installing p11-kit-0.23.18.1... | | `-- Extracting p11-kit-0.23.18.1: .......... done | | `-- Installing trousers-0.3.14_2... | | | `-- Installing tpm-emulator-0.7.4_2... ===> Creating groups. Using existing group '_tss'. ===> Creating users Using existing user '_tss'. | | | `-- Extracting tpm-emulator-0.7.4_2: ........ done ===> Creating groups. Using existing group '_tss'. ===> Creating users Using existing user '_tss'. | | `-- Extracting trousers-0.3.14_2: .......... done | | `-- Extracting gnutls-3.6.12: .......... done | | `-- Installing libpaper-1.1.24.4... | | `-- Extracting libpaper-1.1.24.4: .......... done ===> Creating groups. Creating group 'cups' with gid '193'. ===> Creating users Creating user 'cups' with uid '193'. | `-- Extracting cups-2.2.12: .......... done | `-- Installing gtk-update-icon-cache-2.24.32... | | `-- Installing hicolor-icon-theme-0.17... | | `-- Extracting hicolor-icon-theme-0.17: . done | | `-- Installing libXcomposite-0.4.5,1... | | `-- Extracting libXcomposite-0.4.5,1: .......... done | | `-- Installing libXcursor-1.2.0... | | `-- Extracting libXcursor-1.2.0: .......... done | | `-- Installing libXi-1.7.10,1... | | `-- Extracting libXi-1.7.10,1: .......... done | | `-- Installing libXinerama-1.1.4_2,1... | | `-- Extracting libXinerama-1.1.4_2,1: .......... done | | `-- Installing pango-1.42.4_3... | | `-- Installing encodings-1.0.5,1... | | `-- Extracting encodings-1.0.5,1: .......... done | | `-- Installing fribidi-0.19.7... | | `-- Extracting fribidi-0.19.7: .......... done | | `-- Installing harfbuzz-2.6.4... | | | `-- Installing graphite2-1.3.13_1... | | | `-- Extracting graphite2-1.3.13_1: .......... done | | `-- Extracting harfbuzz-2.6.4: .......... done | | `-- Installing libXft-2.3.3... | | `-- Extracting libXft-2.3.3: ......... done | | `-- Installing xorg-fonts-truetype-7.7_1... | | | `-- Installing dejavu-2.37_1... | | | `-- Installing mkfontscale-1.2.1... | | | | `-- Installing libfontenc-1.1.4... | | | | `-- Extracting libfontenc-1.1.4: ...... done | | | `-- Extracting mkfontscale-1.2.1: .... done | | | `-- Extracting dejavu-2.37_1: .......... done | | | `-- Installing font-bh-ttf-1.0.3_4... | | | `-- Extracting font-bh-ttf-1.0.3_4: .......... done | | | `-- Installing font-misc-ethiopic-1.0.3_4... | | | `-- Extracting font-misc-ethiopic-1.0.3_4: ... done | | | `-- Installing font-misc-meltho-1.0.3_4... | | | `-- Extracting font-misc-meltho-1.0.3_4: .......... done | | `-- Extracting pango-1.42.4_3: .......... done | `-- Extracting gtk-update-icon-cache-2.24.32: . done `-- Extracting gtk2-2.24.32: .......... done `-- Installing libglade2-2.6.4_10... | `-- Installing xmlcatmgr-2.2_2... | `-- Extracting xmlcatmgr-2.2_2: ......... done + Creating /usr/local/share/sgml/catalog + Registering CATALOG catalog.ports (SGML) + Creating /usr/local/share/sgml/catalog.ports + Creating /usr/local/share/xml/catalog + Registering nextCatalog catalog.ports (XML) + Creating /usr/local/share/xml/catalog.ports `-- Extracting libglade2-2.6.4_10: .......... done `-- Installing py27-backports.functools_lru_cache-1.5... | `-- Installing py27-backports-1... | `-- Extracting py27-backports-1: ... done `-- Extracting py27-backports.functools_lru_cache-1.5: ......... done `-- Installing py27-cycler-0.10.0... `-- Extracting py27-cycler-0.10.0: ........ done `-- Installing py27-dateutil-2.8.0... `-- Extracting py27-dateutil-2.8.0: .......... done `-- Installing py27-gobject-2.28.6_8... | `-- Installing py27-cairo-1.18.1_1... | `-- Extracting py27-cairo-1.18.1_1: .......... done `-- Extracting py27-gobject-2.28.6_8: .......... done `-- Installing py27-gtk2-2.24.0_5... `-- Extracting py27-gtk2-2.24.0_5: .......... done `-- Installing py27-kiwisolver-1.1.0... `-- Extracting py27-kiwisolver-1.1.0: ...... done `-- Installing py27-pyparsing-2.4.6... `-- Extracting py27-pyparsing-2.4.6: ....... done `-- Installing py27-pytz-2019.3,1... `-- Extracting py27-pytz-2019.3,1: .......... done `-- Installing py27-tkinter-2.7.17_6... | `-- Installing tcl86-8.6.10... | `-- Extracting tcl86-8.6.10: .......... done | `-- Installing tk86-8.6.10_1... | | `-- Installing libXScrnSaver-1.2.3_2... | | `-- Extracting libXScrnSaver-1.2.3_2: .......... done | `-- Extracting tk86-8.6.10_1: .......... done `-- Extracting py27-tkinter-2.7.17_6: ..... done `-- Installing py27-tornado-5.1.1... | `-- Installing py27-backports_abc-0.5... | `-- Extracting py27-backports_abc-0.5: ....... done | `-- Installing py27-futures-3.2.0... | `-- Extracting py27-futures-3.2.0: .......... done | `-- Installing py27-singledispatch-3.4.0.3_1... | `-- Extracting py27-singledispatch-3.4.0.3_1: .......... done `-- Extracting py27-tornado-5.1.1: .......... done Extracting py27-matplotlib-2.2.4_1: .......... done ===== Message from python37-3.7.6: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py37-gdbm databases/py-gdbm@py37 py37-sqlite3 databases/py-sqlite3@py37 py37-tkinter x11-toolkits/py-tkinter@py37 ===== Message from freetype2-2.10.1: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/site/index.html, if documentation was installed). ===== Message from ca_root_nss-3.50: -- FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem ===== Message from trousers-0.3.14_2: -- To run tcsd automatically, add the following line to /etc/rc.conf: tcsd_enable="YES" You might want to edit /usr/local/etc/tcsd.conf to reflect your setup. If you want to use tcsd with software TPM emulator, use the following configuration in /etc/rc.conf: tcsd_enable="YES" tcsd_mode="emulator" tpmd_enable="YES" To use TPM, add your_account to '_tss' group like following: # pw groupmod _tss -m your_account ===== Message from dejavu-2.37_1: -- Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. ===== Message from xmlcatmgr-2.2_2: -- The following catalogs are installed: 1) /usr/local/share/sgml/catalog The top level catalog for SGML stuff. It is not changed by any ports/packages except textproc/xmlcatmgr. 2) /usr/local/share/sgml/catalog.ports This catalog is for handling SGML stuff installed under /usr/local/share/sgml. It is changed by ports/packages. 3) /usr/local/share/xml/catalog The top level catalog for XML stuff. It is not changed by any ports/packages except textproc/xmlcatmgr. 4) /usr/local/share/xml/catalog.ports This catalog is for handling XML stuff installed under /usr/local/share/xml. It is changed by ports/packages. ===> py27-phono3py-1.13.3.27_5 depends on package: py27-matplotlib>0 - found ===> Returning to build of py27-phono3py-1.13.3.27_5 ===> py27-phono3py-1.13.3.27_5 depends on package: py27-phonopy>=1.13.2 - not found ===> Installing existing package /packages/All/py27-phonopy-2.3.0.txz Installing py27-phonopy-2.3.0... `-- Installing py27-yaml-5.2... `-- Extracting py27-yaml-5.2: .......... done Extracting py27-phonopy-2.3.0: .......... done ===> py27-phono3py-1.13.3.27_5 depends on package: py27-phonopy>=1.13.2 - found ===> Returning to build of py27-phono3py-1.13.3.27_5 ===> py27-phono3py-1.13.3.27_5 depends on package: py27-yaml>0 - found ===> py27-phono3py-1.13.3.27_5 depends on executable: cython-2.7 - not found ===> Installing existing package /packages/All/py27-cython-0.29.13_1.txz Installing py27-cython-0.29.13_1... Extracting py27-cython-0.29.13_1: .......... done ===> py27-phono3py-1.13.3.27_5 depends on executable: cython-2.7 - found ===> Returning to build of py27-phono3py-1.13.3.27_5 ===> py27-phono3py-1.13.3.27_5 depends on package: py27-setuptools>0 - found ===> py27-phono3py-1.13.3.27_5 depends on file: /usr/local/bin/python2.7 - found -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- ===> py27-phono3py-1.13.3.27_5 depends on shared library: libopenblas.so - found (/usr/local/lib/libopenblas.so) -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> py27-phono3py-1.13.3.27_5 depends on package: py27-numpy>=1.15,1<1.19,1 - found ===> py27-phono3py-1.13.3.27_5 depends on package: py27-h5py>0 - found ===> py27-phono3py-1.13.3.27_5 depends on package: py27-matplotlib>0 - found ===> py27-phono3py-1.13.3.27_5 depends on package: py27-phonopy>=1.13.2 - found ===> py27-phono3py-1.13.3.27_5 depends on package: py27-yaml>0 - found ===> py27-phono3py-1.13.3.27_5 depends on executable: cython-2.7 - found ===> py27-phono3py-1.13.3.27_5 depends on package: py27-setuptools>0 - found ===> py27-phono3py-1.13.3.27_5 depends on file: /usr/local/bin/python2.7 - found ===> py27-phono3py-1.13.3.27_5 depends on shared library: libopenblas.so - found (/usr/local/lib/libopenblas.so) ===> Configuring for py27-phono3py-1.13.3.27_5 setuptools is used. running config -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for py27-phono3py-1.13.3.27_5 setuptools is used. running build running build_py creating build creating build/lib.dragonfly-5.7-SYNTH-x86_64-2.7 creating build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py copying phono3py/version.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py copying phono3py/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py copying phono3py/file_IO.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py creating build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/cui copying phono3py/cui/settings.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/cui copying phono3py/cui/translate_settings.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/cui copying phono3py/cui/phono3py_argparse.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/cui copying phono3py/cui/show_log.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/cui copying phono3py/cui/create_supercells.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/cui copying phono3py/cui/triplets_info.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/cui copying phono3py/cui/phono3py_yaml.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/cui copying phono3py/cui/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/cui copying phono3py/cui/create_force_constants.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/cui creating build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/other copying phono3py/other/isotope.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/other copying phono3py/other/alm_wrapper.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/other copying phono3py/other/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/other creating build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/phonon copying phono3py/phonon/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/phonon copying phono3py/phonon/solver.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/phonon creating build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/phonon3 copying phono3py/phonon3/displacement_fc3.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/phonon3 copying phono3py/phonon3/joint_dos.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/phonon3 copying phono3py/phonon3/fc3.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/phonon3 copying phono3py/phonon3/real_to_reciprocal.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/phonon3 copying phono3py/phonon3/conductivity_LBTE.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/phonon3 copying phono3py/phonon3/conductivity.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/phonon3 copying phono3py/phonon3/interaction.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/phonon3 copying phono3py/phonon3/conductivity_RTA.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/phonon3 copying phono3py/phonon3/triplets.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/phonon3 copying phono3py/phonon3/imag_self_energy.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/phonon3 copying phono3py/phonon3/collision_matrix.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/phonon3 copying phono3py/phonon3/reciprocal_to_normal.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/phonon3 copying phono3py/phonon3/frequency_shift.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/phonon3 copying phono3py/phonon3/gruneisen.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/phonon3 copying phono3py/phonon3/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/phonon3 running build_ext building 'phono3py._lapackepy' extension creating build/temp.dragonfly-5.7-SYNTH-x86_64-2.7 creating build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c creating build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/harmonic cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c c/_lapackepy.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/_lapackepy.o -fopenmp -DMULTITHREADED_BLAS In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from c/_lapackepy.c:38: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c c/harmonic/dynmat.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/harmonic/dynmat.o -fopenmp -DMULTITHREADED_BLAS cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c c/harmonic/phonon.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/harmonic/phonon.o -fopenmp -DMULTITHREADED_BLAS cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c c/harmonic/phonoc_array.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/harmonic/phonoc_array.o -fopenmp -DMULTITHREADED_BLAS In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from c/harmonic/phonoc_array.c:36: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c c/harmonic/phonoc_utils.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/harmonic/phonoc_utils.o -fopenmp -DMULTITHREADED_BLAS In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from c/harmonic_h/phonoc_array.h:39, from c/harmonic/phonoc_utils.c:37: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c c/harmonic/lapack_wrapper.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/harmonic/lapack_wrapper.o -fopenmp -DMULTITHREADED_BLAS cc -shared -L/usr/local/lib -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/_lapackepy.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/harmonic/dynmat.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/harmonic/phonon.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/harmonic/phonoc_array.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/harmonic/phonoc_utils.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/harmonic/lapack_wrapper.o -L/usr/local/lib -lpython2.7 -o build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/_lapackepy.so -lgomp -lopenblas building 'phono3py._phono3py' extension creating build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/anharmonic creating build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/anharmonic/phonon3 creating build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/anharmonic/other creating build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/anharmonic/triplet creating build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/spglib creating build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/kspclib cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c c/_phono3py.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/_phono3py.o -fopenmp -DMULTITHREADED_BLAS In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from c/_phono3py.c:39: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c c/harmonic/dynmat.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/harmonic/dynmat.o -fopenmp -DMULTITHREADED_BLAS cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c c/harmonic/phonon.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/harmonic/phonon.o -fopenmp -DMULTITHREADED_BLAS cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c c/harmonic/lapack_wrapper.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/harmonic/lapack_wrapper.o -fopenmp -DMULTITHREADED_BLAS cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c c/harmonic/phonoc_array.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/harmonic/phonoc_array.o -fopenmp -DMULTITHREADED_BLAS In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from c/harmonic/phonoc_array.c:36: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c c/harmonic/phonoc_utils.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/harmonic/phonoc_utils.o -fopenmp -DMULTITHREADED_BLAS In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from c/harmonic_h/phonoc_array.h:39, from c/harmonic/phonoc_utils.c:37: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c c/anharmonic/phonon3/fc3.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/anharmonic/phonon3/fc3.o -fopenmp -DMULTITHREADED_BLAS cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c c/anharmonic/phonon3/frequency_shift.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/anharmonic/phonon3/frequency_shift.o -fopenmp -DMULTITHREADED_BLAS In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from c/harmonic_h/phonoc_array.h:39, from c/anharmonic/phonon3/frequency_shift.c:37: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c c/anharmonic/phonon3/interaction.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/anharmonic/phonon3/interaction.o -fopenmp -DMULTITHREADED_BLAS In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from c/harmonic_h/phonoc_array.h:39, from c/anharmonic/phonon3/interaction.c:37: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c c/anharmonic/phonon3/real_to_reciprocal.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/anharmonic/phonon3/real_to_reciprocal.o -fopenmp -DMULTITHREADED_BLAS In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from c/harmonic_h/phonoc_array.h:39, from c/anharmonic/phonon3/real_to_reciprocal.c:39: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c c/anharmonic/phonon3/reciprocal_to_normal.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/anharmonic/phonon3/reciprocal_to_normal.o -fopenmp -DMULTITHREADED_BLAS In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from c/harmonic_h/phonoc_array.h:39, from c/harmonic_h/phonoc_utils.h:38, from c/anharmonic/phonon3/reciprocal_to_normal.c:37: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c c/anharmonic/phonon3/imag_self_energy_with_g.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/anharmonic/phonon3/imag_self_energy_with_g.o -fopenmp -DMULTITHREADED_BLAS In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from c/harmonic_h/phonoc_array.h:39, from c/anharmonic/phonon3/imag_self_energy_with_g.c:37: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c c/anharmonic/phonon3/pp_collision.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/anharmonic/phonon3/pp_collision.o -fopenmp -DMULTITHREADED_BLAS In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from c/harmonic_h/phonoc_array.h:39, from c/anharmonic/phonon3/pp_collision.c:37: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c c/anharmonic/phonon3/collision_matrix.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/anharmonic/phonon3/collision_matrix.o -fopenmp -DMULTITHREADED_BLAS In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from c/harmonic_h/phonoc_array.h:39, from c/anharmonic/phonon3/collision_matrix.c:38: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c c/anharmonic/other/isotope.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/anharmonic/other/isotope.o -fopenmp -DMULTITHREADED_BLAS In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from c/harmonic_h/phonoc_array.h:39, from c/harmonic_h/phonoc_utils.h:38, from c/anharmonic/other/isotope.c:37: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c c/anharmonic/triplet/triplet.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/anharmonic/triplet/triplet.o -fopenmp -DMULTITHREADED_BLAS cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c c/anharmonic/triplet/triplet_kpoint.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/anharmonic/triplet/triplet_kpoint.o -fopenmp -DMULTITHREADED_BLAS cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c c/anharmonic/triplet/triplet_iw.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/anharmonic/triplet/triplet_iw.o -fopenmp -DMULTITHREADED_BLAS In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from c/harmonic_h/phonoc_array.h:39, from c/harmonic_h/phonoc_utils.h:38, from c/anharmonic/triplet/triplet_iw.c:36: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c c/spglib/mathfunc.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/spglib/mathfunc.o -fopenmp -DMULTITHREADED_BLAS cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c c/spglib/kpoint.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/spglib/kpoint.o -fopenmp -DMULTITHREADED_BLAS cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c c/kspclib/kgrid.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/kspclib/kgrid.o -fopenmp -DMULTITHREADED_BLAS cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -Ic/anharmonic_h -Ic/spglib_h -Ic/kspclib_h -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c c/kspclib/tetrahedron_method.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/kspclib/tetrahedron_method.o -fopenmp -DMULTITHREADED_BLAS cc -shared -L/usr/local/lib -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/_phono3py.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/harmonic/dynmat.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/harmonic/phonon.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/harmonic/lapack_wrapper.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/harmonic/phonoc_array.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/harmonic/phonoc_utils.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/anharmonic/phonon3/fc3.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/anharmonic/phonon3/frequency_shift.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/anharmonic/phonon3/interaction.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/anharmonic/phonon3/real_to_reciprocal.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/anharmonic/phonon3/reciprocal_to_normal.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/anharmonic/phonon3/imag_self_energy_with_g.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/anharmonic/phonon3/pp_collision.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/anharmonic/phonon3/collision_matrix.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/anharmonic/other/isotope.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/anharmonic/triplet/triplet.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/anharmonic/triplet/triplet_kpoint.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/anharmonic/triplet/triplet_iw.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/spglib/mathfunc.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/spglib/kpoint.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/kspclib/kgrid.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/c/kspclib/tetrahedron_method.o -L/usr/local/lib -lpython2.7 -o build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/_phono3py.so -lgomp -lopenblas running build_scripts creating build/scripts-2.7 copying and adjusting scripts/phono3py -> build/scripts-2.7 copying and adjusting scripts/phono3py-kaccum -> build/scripts-2.7 copying and adjusting scripts/phono3py-kdeplot -> build/scripts-2.7 copying and adjusting scripts/phono3py-coleigplot -> build/scripts-2.7 changing mode of build/scripts-2.7/phono3py from 644 to 755 changing mode of build/scripts-2.7/phono3py-kaccum from 644 to 755 changing mode of build/scripts-2.7/phono3py-kdeplot from 644 to 755 changing mode of build/scripts-2.7/phono3py-coleigplot from 644 to 755 => Checking for system changes between port configure and build Everything is fine. -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- ===> py27-phono3py-1.13.3.27_5 depends on package: py27-numpy>=1.15,1<1.19,1 - found ===> py27-phono3py-1.13.3.27_5 depends on package: py27-h5py>0 - found ===> py27-phono3py-1.13.3.27_5 depends on package: py27-matplotlib>0 - found ===> py27-phono3py-1.13.3.27_5 depends on package: py27-phonopy>=1.13.2 - found ===> py27-phono3py-1.13.3.27_5 depends on package: py27-yaml>0 - found ===> py27-phono3py-1.13.3.27_5 depends on package: py27-setuptools>0 - found ===> py27-phono3py-1.13.3.27_5 depends on file: /usr/local/bin/python2.7 - found -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for py27-phono3py-1.13.3.27_5 ===> py27-phono3py-1.13.3.27_5 depends on package: py27-numpy>=1.15,1<1.19,1 - found ===> py27-phono3py-1.13.3.27_5 depends on package: py27-h5py>0 - found ===> py27-phono3py-1.13.3.27_5 depends on package: py27-matplotlib>0 - found ===> py27-phono3py-1.13.3.27_5 depends on package: py27-phonopy>=1.13.2 - found ===> py27-phono3py-1.13.3.27_5 depends on package: py27-yaml>0 - found ===> py27-phono3py-1.13.3.27_5 depends on package: py27-setuptools>0 - found ===> py27-phono3py-1.13.3.27_5 depends on file: /usr/local/bin/python2.7 - found ===> Generating temporary packing list setuptools is used. running install running build running build_py running build_ext running build_scripts running install_lib creating /construction/science/py-phono3py/stage/usr/local/lib/python2.7 creating /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages creating /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/_lapackepy.so -> /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py creating /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/other copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/other/alm_wrapper.py -> /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/other copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/other/__init__.py -> /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/other copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/other/isotope.py -> /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/other copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/version.py -> /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py creating /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/phonon copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/phonon/solver.py -> /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/phonon copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/phonon/__init__.py -> /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/phonon copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/file_IO.py -> /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/__init__.py -> /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py creating /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/phonon3 copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/phonon3/real_to_reciprocal.py -> /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/phonon3 copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/phonon3/conductivity_RTA.py -> /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/phonon3 copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/phonon3/conductivity.py -> /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/phonon3 copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/phonon3/gruneisen.py -> /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/phonon3 copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/phonon3/interaction.py -> /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/phonon3 copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/phonon3/collision_matrix.py -> /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/phonon3 copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/phonon3/triplets.py -> /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/phonon3 copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/phonon3/conductivity_LBTE.py -> /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/phonon3 copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/phonon3/joint_dos.py -> /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/phonon3 copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/phonon3/reciprocal_to_normal.py -> /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/phonon3 copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/phonon3/__init__.py -> /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/phonon3 copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/phonon3/fc3.py -> /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/phonon3 copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/phonon3/frequency_shift.py -> /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/phonon3 copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/phonon3/displacement_fc3.py -> /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/phonon3 copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/phonon3/imag_self_energy.py -> /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/phonon3 copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/_phono3py.so -> /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py creating /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/cui copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/cui/phono3py_argparse.py -> /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/cui copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/cui/phono3py_yaml.py -> /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/cui copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/cui/create_supercells.py -> /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/cui copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/cui/show_log.py -> /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/cui copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/cui/triplets_info.py -> /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/cui copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/cui/create_force_constants.py -> /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/cui copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/cui/settings.py -> /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/cui copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/cui/__init__.py -> /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/cui copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/phono3py/cui/translate_settings.py -> /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/cui byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/other/alm_wrapper.py to alm_wrapper.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/other/__init__.py to __init__.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/other/isotope.py to isotope.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/version.py to version.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/phonon/solver.py to solver.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/phonon/__init__.py to __init__.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/file_IO.py to file_IO.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/__init__.py to __init__.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/phonon3/real_to_reciprocal.py to real_to_reciprocal.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/phonon3/conductivity_RTA.py to conductivity_RTA.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/phonon3/conductivity.py to conductivity.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/phonon3/gruneisen.py to gruneisen.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/phonon3/interaction.py to interaction.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/phonon3/collision_matrix.py to collision_matrix.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/phonon3/triplets.py to triplets.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/phonon3/conductivity_LBTE.py to conductivity_LBTE.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/phonon3/joint_dos.py to joint_dos.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/phonon3/reciprocal_to_normal.py to reciprocal_to_normal.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/phonon3/__init__.py to __init__.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/phonon3/fc3.py to fc3.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/phonon3/frequency_shift.py to frequency_shift.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/phonon3/displacement_fc3.py to displacement_fc3.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/phonon3/imag_self_energy.py to imag_self_energy.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/cui/phono3py_argparse.py to phono3py_argparse.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/cui/phono3py_yaml.py to phono3py_yaml.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/cui/create_supercells.py to create_supercells.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/cui/show_log.py to show_log.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/cui/triplets_info.py to triplets_info.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/cui/create_force_constants.py to create_force_constants.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/cui/settings.py to settings.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/cui/__init__.py to __init__.pyc byte-compiling /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py/cui/translate_settings.py to translate_settings.pyc writing byte-compilation script '/tmp/tmppvE_gw.py' /usr/local/bin/python2.7 -O /tmp/tmppvE_gw.py removing /tmp/tmppvE_gw.py running install_egg_info running egg_info writing requirements to phono3py.egg-info/requires.txt writing phono3py.egg-info/PKG-INFO writing top-level names to phono3py.egg-info/top_level.txt writing dependency_links to phono3py.egg-info/dependency_links.txt reading manifest file 'phono3py.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'phono3py.egg-info/SOURCES.txt' Copying phono3py.egg-info to /construction/science/py-phono3py/stage/usr/local/lib/python2.7/site-packages/phono3py-1.13.3.27-py2.7.egg-info running install_scripts copying build/scripts-2.7/phono3py-kaccum -> /construction/science/py-phono3py/stage/usr/local/bin copying build/scripts-2.7/phono3py-coleigplot -> /construction/science/py-phono3py/stage/usr/local/bin copying build/scripts-2.7/phono3py-kdeplot -> /construction/science/py-phono3py/stage/usr/local/bin copying build/scripts-2.7/phono3py -> /construction/science/py-phono3py/stage/usr/local/bin changing mode of /construction/science/py-phono3py/stage/usr/local/bin/phono3py-kaccum to 755 changing mode of /construction/science/py-phono3py/stage/usr/local/bin/phono3py-coleigplot to 755 changing mode of /construction/science/py-phono3py/stage/usr/local/bin/phono3py-kdeplot to 755 changing mode of /construction/science/py-phono3py/stage/usr/local/bin/phono3py to 755 writing list of installed files to '/construction/science/py-phono3py/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Error: /usr/local/lib/python2.7/site-packages/phono3py/_lapackepy.so is linked to /usr/local/lib/libopenblas.so which does not have a SONAME. math/openblas needs to be fixed. Error: /usr/local/lib/python2.7/site-packages/phono3py/_lapackepy.so is linked to /usr/local/lib/libintl.so.8 from devel/gettext-runtime but it is not declared as a dependency Warning: you need USES+=gettext-runtime Error: /usr/local/lib/python2.7/site-packages/phono3py/_lapackepy.so is linked to /usr/local/lib/gcc8/libgfortran.so.5 from lang/gcc8 but it is not declared as a dependency Error: /usr/local/lib/python2.7/site-packages/phono3py/_lapackepy.so is linked to /usr/local/lib/gcc8/libquadmath.so.0 from lang/gcc8 but it is not declared as a dependency Error: /usr/local/lib/python2.7/site-packages/phono3py/_lapackepy.so is linked to /usr/local/lib/gcc8/libgcc_s.so.1 from lang/gcc8 but it is not declared as a dependency Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks -------------------------------------------------------------------------------- -- Phase: check-plist -------------------------------------------------------------------------------- ====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for py27-phono3py-1.13.3.27_5 file sizes/checksums [107]: .. done packing files [107]: .. done packing directories [0]: . done -------------------------------------------------------------------------------- -- Phase: install-mtree -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: install -------------------------------------------------------------------------------- ===> Installing for py27-phono3py-1.13.3.27_5 ===> Checking if py27-phono3py is already installed ===> Registering installation for py27-phono3py-1.13.3.27_5 Installing py27-phono3py-1.13.3.27_5... -------------------------------------------------------------------------------- -- Phase: deinstall -------------------------------------------------------------------------------- => Checking shared library dependencies NEEDED libpython2.7.so.1 NEEDED libgomp.so.1 NEEDED libopenblas.so NEEDED libc.so.8 ===> Deinstalling for py27-phono3py ===> Deinstalling py27-phono3py-1.13.3.27_5 Updating database digests format: .......... done Checking integrity... done (0 conflicting) Deinstallation has been requested for the following 1 packages (of 0 packages in the universe): Installed packages to be REMOVED: py27-phono3py-1.13.3.27_5 Number of packages to be removed: 1 The operation will free 1 MiB. [1/1] Deinstalling py27-phono3py-1.13.3.27_5... [1/1] Deleting files for py27-phono3py-1.13.3.27_5: .......... done => Checking for system changes between staging and package deinstallation Everything is fine. -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Thursday, 20 FEB 2020 at 10:16:21 UTC Duration: 00:01:29