=> Building science/py-oddt@py36 Started : Saturday, 7 DEC 2019 at 23:45:51 UTC Platform: 5.7-DEVELOPMENT DragonFly v5.7.0.1123.g96cc8-DEVELOPMENT #17: Thu Dec 5 01:08:49 PST 2019 root@sting.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.7-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.7-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- PYTHON="/usr/local/bin/python3.6" XDG_DATA_HOME=/construction/science/py-oddt XDG_CONFIG_HOME=/construction/science/py-oddt HOME=/construction/science/py-oddt TMPDIR="/tmp" PATH=/construction/science/py-oddt/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- XDG_DATA_HOME=/construction/science/py-oddt XDG_CONFIG_HOME=/construction/science/py-oddt HOME=/construction/science/py-oddt TMPDIR="/tmp" PATH=/construction/science/py-oddt/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/science/py-oddt/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- PYTHON_INCLUDEDIR=include/python3.6m PYTHON_LIBDIR=lib/python3.6 PYTHON_PLATFORM=dragonfly5 PYTHON_SITELIBDIR=lib/python3.6/site-packages PYTHON_SUFFIX=36 PYTHON_VER=3.6 PYTHON_VERSION=python3.6 PYTHON2="@comment " PYTHON3="" OSREL=5.7 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/py36-oddt" EXAMPLESDIR="share/examples/py36-oddt" DATADIR="share/py36-oddt" WWWDIR="www/py36-oddt" ETCDIR="etc/py36-oddt" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/py36-oddt DOCSDIR=/usr/local/share/doc/py36-oddt EXAMPLESDIR=/usr/local/share/examples/py36-oddt WWWDIR=/usr/local/www/py36-oddt ETCDIR=/usr/local/etc/py36-oddt -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=LiveSystem USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=15 DPORTS_BUILDER= yes DISABLE_LICENSES= yes DEFAULT_VERSIONS= ssl=openssl FORCE_PACKAGE= yes DEVELOPER= yes HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.30.0 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=32 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500709 OSVERSION=9999999 OSREL=5.7 _OSRELEASE=5.7-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> py36-oddt-0.6_2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.12.0.txz Installing pkg-1.12.0... Extracting pkg-1.12.0: .......... done ===> py36-oddt-0.6_2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py36-oddt-0.6_2 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- => oddt-oddt-0.6_GH0.tar.gz doesn't seem to exist in /distfiles/. => Attempting to fetch https://codeload.github.com/oddt/oddt/tar.gz/0.6?dummy=/oddt-oddt-0.6_GH0.tar.gz fetch: https://codeload.github.com/oddt/oddt/tar.gz/0.6?dummy=/oddt-oddt-0.6_GH0.tar.gz: size unknown fetch: https://codeload.github.com/oddt/oddt/tar.gz/0.6?dummy=/oddt-oddt-0.6_GH0.tar.gz: size of remote file is not known oddt-oddt-0.6_GH0.tar.gz 39 MB 6844 kBps 06s ===> Fetching all distfiles required by py36-oddt-0.6_2 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> Fetching all distfiles required by py36-oddt-0.6_2 for building => SHA256 Checksum OK for oddt-oddt-0.6_GH0.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> Fetching all distfiles required by py36-oddt-0.6_2 for building ===> Extracting for py36-oddt-0.6_2 => SHA256 Checksum OK for oddt-oddt-0.6_GH0.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for py36-oddt-0.6_2 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> py36-oddt-0.6_2 depends on package: py36-numpy>0 - not found ===> Installing existing package /packages/All/py36-numpy-1.16.5_1,1.txz Installing py36-numpy-1.16.5_1,1... `-- Installing gcc8-8.3.0_3... | `-- Installing binutils-2.33.1,1... | | `-- Installing gettext-runtime-0.20.1... | | `-- Installing indexinfo-0.3.1... | | `-- Extracting indexinfo-0.3.1: . done | | `-- Extracting gettext-runtime-0.20.1: .......... done | `-- Extracting binutils-2.33.1,1: .......... done | `-- Installing gmp-6.1.2_1... | `-- Extracting gmp-6.1.2_1: .......... done | `-- Installing mpc-1.1.0_2... | | `-- Installing mpfr-4.0.2... | | `-- Extracting mpfr-4.0.2: .......... done | `-- Extracting mpc-1.1.0_2: ...... done `-- Extracting gcc8-8.3.0_3: .......... done `-- Installing openblas-0.2.20_11,1... `-- Extracting openblas-0.2.20_11,1: .......... done `-- Installing py36-setuptools-41.4.0... | `-- Installing python36-3.6.9_1... | | `-- Installing expat-2.2.8... | | `-- Extracting expat-2.2.8: .......... done | | `-- Installing libffi-3.2.1_3... | | `-- Extracting libffi-3.2.1_3: .......... done | | `-- Installing ncurses-6.1.20190525... | | `-- Extracting ncurses-6.1.20190525: .......... done | | `-- Installing openssl-1.0.2t,1... | | `-- Extracting openssl-1.0.2t,1: .......... done | | `-- Installing readline-8.0.0... | | `-- Extracting readline-8.0.0: .......... done | `-- Extracting python36-3.6.9_1: .......... done `-- Extracting py36-setuptools-41.4.0: .......... done `-- Installing suitesparse-5.4.0_3... | `-- Installing metis-5.1.0_8... | `-- Extracting metis-5.1.0_8: .......... done | `-- Installing tbb-2019.8... | `-- Extracting tbb-2019.8: .......... done `-- Extracting suitesparse-5.4.0_3: .......... done Extracting py36-numpy-1.16.5_1,1: .......... done ===== Message from gcc8-8.3.0_3: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===== Message from openssl-1.0.2t,1: -- Edit /usr/local/openssl/openssl.cnf to fit your needs. -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: OpenSSL 1.0.2 is End-of-Life 2019-12-31 at which time this port will update to 1.1.1 branch. It is scheduled to be removed on or after 2019-12-31. ===== Message from python36-3.6.9_1: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py36-gdbm databases/py-gdbm@py36 py36-sqlite3 databases/py-sqlite3@py36 py36-tkinter x11-toolkits/py-tkinter@py36 ===> py36-oddt-0.6_2 depends on package: py36-numpy>0 - found ===> Returning to build of py36-oddt-0.6_2 ===> py36-oddt-0.6_2 depends on package: py36-joblib>0 - not found ===> Installing existing package /packages/All/py36-joblib-0.13.0.txz Installing py36-joblib-0.13.0... Extracting py36-joblib-0.13.0: .......... done ===> py36-oddt-0.6_2 depends on package: py36-joblib>0 - found ===> Returning to build of py36-oddt-0.6_2 ===> py36-oddt-0.6_2 depends on package: py36-pandas>0 - not found ===> Installing existing package /packages/All/py36-pandas-0.24.2_1,1.txz Installing py36-pandas-0.24.2_1,1... `-- Installing py36-bottleneck-1.3.0... `-- Extracting py36-bottleneck-1.3.0: .......... done `-- Installing py36-dateutil-2.8.0... | `-- Installing py36-six-1.12.0... | `-- Extracting py36-six-1.12.0: ....... done `-- Extracting py36-dateutil-2.8.0: .......... done `-- Installing py36-numexpr-2.7.0... `-- Extracting py36-numexpr-2.7.0: .......... done `-- Installing py36-pytz-2019.3,1... `-- Extracting py36-pytz-2019.3,1: .......... done `-- Installing py36-sqlite3-3.6.9_7... | `-- Installing sqlite3-3.30.1... | `-- Extracting sqlite3-3.30.1: ......... done `-- Extracting py36-sqlite3-3.6.9_7: ..... done Extracting py36-pandas-0.24.2_1,1: .......... done ===== Message from py36-pandas-0.24.2_1,1: -- Install math/py-statsmodels to enable parts of pandas.stats. Install devel/py-xarray to enable the to_xarray() function. ===> py36-oddt-0.6_2 depends on package: py36-pandas>0 - found ===> Returning to build of py36-oddt-0.6_2 ===> py36-oddt-0.6_2 depends on package: py36-scikit-learn>0 - not found ===> Installing existing package /packages/All/py36-scikit-learn-0.20.3_1.txz Installing py36-scikit-learn-0.20.3_1... `-- Installing cblas-1.0_12... `-- Extracting cblas-1.0_12: ...... done `-- Installing py36-scipy-1.2.2_1... `-- Extracting py36-scipy-1.2.2_1: .......... done Extracting py36-scikit-learn-0.20.3_1: .......... done ===== Message from cblas-1.0_12: -- ===> NOTICE: The cblas port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===== Message from py36-scikit-learn-0.20.3_1: -- ===> NOTICE: The py36-scikit-learn port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> py36-oddt-0.6_2 depends on package: py36-scikit-learn>0 - found ===> Returning to build of py36-oddt-0.6_2 ===> py36-oddt-0.6_2 depends on package: py36-scipy>=0.9.0 - found ===> py36-oddt-0.6_2 depends on package: py36-six>0 - found ===> py36-oddt-0.6_2 depends on package: py36-setuptools>0 - found ===> py36-oddt-0.6_2 depends on file: /usr/local/bin/python3.6 - found -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for py36-oddt-0.6_2 running config /construction/science/py-oddt/oddt-0.6/oddt/__init__.py:50: UserWarning: No toolkit is present. Install OpenBabel or RDKit warnings.warn('No toolkit is present. Install OpenBabel or RDKit') -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for py36-oddt-0.6_2 running build running build_py creating build creating build/lib creating build/lib/oddt copying oddt/__init__.py -> build/lib/oddt copying oddt/datasets.py -> build/lib/oddt copying oddt/fingerprints.py -> build/lib/oddt copying oddt/interactions.py -> build/lib/oddt copying oddt/metrics.py -> build/lib/oddt copying oddt/pandas.py -> build/lib/oddt copying oddt/shape.py -> build/lib/oddt copying oddt/spatial.py -> build/lib/oddt copying oddt/surface.py -> build/lib/oddt copying oddt/utils.py -> build/lib/oddt copying oddt/virtualscreening.py -> build/lib/oddt creating build/lib/tests copying tests/__init__.py -> build/lib/tests copying tests/test_datasets.py -> build/lib/tests copying tests/test_descriptors.py -> build/lib/tests copying tests/test_fingerprints.py -> build/lib/tests copying tests/test_interactions.py -> build/lib/tests copying tests/test_metrics.py -> build/lib/tests copying tests/test_models.py -> build/lib/tests copying tests/test_pandas.py -> build/lib/tests copying tests/test_scoring.py -> build/lib/tests copying tests/test_shape.py -> build/lib/tests copying tests/test_spatial.py -> build/lib/tests copying tests/test_surface.py -> build/lib/tests copying tests/test_toolkit.py -> build/lib/tests copying tests/test_utils.py -> build/lib/tests copying tests/test_virtualscreening.py -> build/lib/tests copying tests/utils.py -> build/lib/tests creating build/lib/oddt/docking copying oddt/docking/AutodockVina.py -> build/lib/oddt/docking copying oddt/docking/__init__.py -> build/lib/oddt/docking copying oddt/docking/internal.py -> build/lib/oddt/docking creating build/lib/oddt/scoring copying oddt/scoring/__init__.py -> build/lib/oddt/scoring creating build/lib/oddt/toolkits copying oddt/toolkits/__init__.py -> build/lib/oddt/toolkits copying oddt/toolkits/common.py -> build/lib/oddt/toolkits copying oddt/toolkits/ob.py -> build/lib/oddt/toolkits copying oddt/toolkits/rdk.py -> build/lib/oddt/toolkits creating build/lib/oddt/scoring/descriptors copying oddt/scoring/descriptors/__init__.py -> build/lib/oddt/scoring/descriptors copying oddt/scoring/descriptors/binana.py -> build/lib/oddt/scoring/descriptors creating build/lib/oddt/scoring/functions copying oddt/scoring/functions/NNScore.py -> build/lib/oddt/scoring/functions copying oddt/scoring/functions/PLECscore.py -> build/lib/oddt/scoring/functions copying oddt/scoring/functions/RFScore.py -> build/lib/oddt/scoring/functions copying oddt/scoring/functions/__init__.py -> build/lib/oddt/scoring/functions creating build/lib/oddt/scoring/models copying oddt/scoring/models/__init__.py -> build/lib/oddt/scoring/models copying oddt/scoring/models/classifiers.py -> build/lib/oddt/scoring/models copying oddt/scoring/models/regressors.py -> build/lib/oddt/scoring/models creating build/lib/oddt/toolkits/extras copying oddt/toolkits/extras/__init__.py -> build/lib/oddt/toolkits/extras copying oddt/toolkits/extras/rdkit.py -> build/lib/oddt/toolkits/extras creating build/lib/oddt/scoring/functions/NNScore copying oddt/scoring/functions/NNScore/nnscore_descs.csv -> build/lib/oddt/scoring/functions/NNScore creating build/lib/oddt/scoring/functions/RFScore copying oddt/scoring/functions/RFScore/rfscore_descs_v1.csv -> build/lib/oddt/scoring/functions/RFScore copying oddt/scoring/functions/RFScore/rfscore_descs_v2.csv -> build/lib/oddt/scoring/functions/RFScore copying oddt/scoring/functions/RFScore/rfscore_descs_v3.csv -> build/lib/oddt/scoring/functions/RFScore creating build/lib/oddt/scoring/functions/PLECscore copying oddt/scoring/functions/PLECscore/plecscore_linear_p5_l1_s65536_pdbbind2016.json -> build/lib/oddt/scoring/functions/PLECscore running build_scripts creating build/scripts-3.6 copying and adjusting bin/oddt_cli -> build/scripts-3.6 changing mode of build/scripts-3.6/oddt_cli from 644 to 755 /construction/science/py-oddt/oddt-0.6/oddt/__init__.py:50: UserWarning: No toolkit is present. Install OpenBabel or RDKit warnings.warn('No toolkit is present. Install OpenBabel or RDKit') -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- ===> py36-oddt-0.6_2 depends on package: py36-numpy>0 - found ===> py36-oddt-0.6_2 depends on package: py36-joblib>0 - found ===> py36-oddt-0.6_2 depends on package: py36-pandas>0 - found ===> py36-oddt-0.6_2 depends on package: py36-scikit-learn>0 - found ===> py36-oddt-0.6_2 depends on package: py36-scipy>=0.9.0 - found ===> py36-oddt-0.6_2 depends on package: py36-six>0 - found ===> py36-oddt-0.6_2 depends on package: py36-setuptools>0 - found ===> py36-oddt-0.6_2 depends on file: /usr/local/bin/python3.6 - found -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for py36-oddt-0.6_2 ===> Generating temporary packing list running install running build running build_py running build_scripts running install_lib creating /construction/science/py-oddt/stage/usr/local/lib/python3.6 creating /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages creating /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt copying build/lib/oddt/surface.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt copying build/lib/oddt/pandas.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt copying build/lib/oddt/metrics.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt copying build/lib/oddt/shape.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt copying build/lib/oddt/interactions.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt copying build/lib/oddt/__init__.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt copying build/lib/oddt/utils.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt creating /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring copying build/lib/oddt/scoring/__init__.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring creating /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring/descriptors copying build/lib/oddt/scoring/descriptors/__init__.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring/descriptors copying build/lib/oddt/scoring/descriptors/binana.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring/descriptors creating /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring/functions copying build/lib/oddt/scoring/functions/__init__.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring/functions copying build/lib/oddt/scoring/functions/NNScore.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring/functions copying build/lib/oddt/scoring/functions/PLECscore.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring/functions copying build/lib/oddt/scoring/functions/RFScore.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring/functions creating /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring/functions/RFScore copying build/lib/oddt/scoring/functions/RFScore/rfscore_descs_v3.csv -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring/functions/RFScore copying build/lib/oddt/scoring/functions/RFScore/rfscore_descs_v2.csv -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring/functions/RFScore copying build/lib/oddt/scoring/functions/RFScore/rfscore_descs_v1.csv -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring/functions/RFScore creating /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring/functions/PLECscore copying build/lib/oddt/scoring/functions/PLECscore/plecscore_linear_p5_l1_s65536_pdbbind2016.json -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring/functions/PLECscore creating /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring/functions/NNScore copying build/lib/oddt/scoring/functions/NNScore/nnscore_descs.csv -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring/functions/NNScore creating /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring/models copying build/lib/oddt/scoring/models/classifiers.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring/models copying build/lib/oddt/scoring/models/__init__.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring/models copying build/lib/oddt/scoring/models/regressors.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring/models creating /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/docking copying build/lib/oddt/docking/AutodockVina.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/docking copying build/lib/oddt/docking/internal.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/docking copying build/lib/oddt/docking/__init__.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/docking copying build/lib/oddt/datasets.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt copying build/lib/oddt/spatial.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt creating /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/toolkits copying build/lib/oddt/toolkits/common.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/toolkits copying build/lib/oddt/toolkits/ob.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/toolkits copying build/lib/oddt/toolkits/__init__.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/toolkits copying build/lib/oddt/toolkits/rdk.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/toolkits creating /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/toolkits/extras copying build/lib/oddt/toolkits/extras/rdkit.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/toolkits/extras copying build/lib/oddt/toolkits/extras/__init__.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/toolkits/extras copying build/lib/oddt/virtualscreening.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt copying build/lib/oddt/fingerprints.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt creating /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests copying build/lib/tests/test_utils.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests copying build/lib/tests/test_toolkit.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests copying build/lib/tests/test_pandas.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests copying build/lib/tests/test_models.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests copying build/lib/tests/__init__.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests copying build/lib/tests/test_interactions.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests copying build/lib/tests/test_scoring.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests copying build/lib/tests/test_datasets.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests copying build/lib/tests/test_fingerprints.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests copying build/lib/tests/utils.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests copying build/lib/tests/test_virtualscreening.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests copying build/lib/tests/test_surface.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests copying build/lib/tests/test_shape.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests copying build/lib/tests/test_metrics.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests copying build/lib/tests/test_spatial.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests copying build/lib/tests/test_descriptors.py -> /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/surface.py to surface.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/pandas.py to pandas.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/metrics.py to metrics.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/shape.py to shape.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/interactions.py to interactions.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/utils.py to utils.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring/descriptors/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring/descriptors/binana.py to binana.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring/functions/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring/functions/NNScore.py to NNScore.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring/functions/PLECscore.py to PLECscore.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring/functions/RFScore.py to RFScore.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring/models/classifiers.py to classifiers.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring/models/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/scoring/models/regressors.py to regressors.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/docking/AutodockVina.py to AutodockVina.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/docking/internal.py to internal.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/docking/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/datasets.py to datasets.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/spatial.py to spatial.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/toolkits/common.py to common.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/toolkits/ob.py to ob.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/toolkits/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/toolkits/rdk.py to rdk.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/toolkits/extras/rdkit.py to rdkit.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/toolkits/extras/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/virtualscreening.py to virtualscreening.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt/fingerprints.py to fingerprints.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests/test_utils.py to test_utils.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests/test_toolkit.py to test_toolkit.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests/test_pandas.py to test_pandas.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests/test_models.py to test_models.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests/test_interactions.py to test_interactions.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests/test_scoring.py to test_scoring.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests/test_datasets.py to test_datasets.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests/test_fingerprints.py to test_fingerprints.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests/utils.py to utils.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests/test_virtualscreening.py to test_virtualscreening.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests/test_surface.py to test_surface.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests/test_shape.py to test_shape.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests/test_metrics.py to test_metrics.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests/test_spatial.py to test_spatial.cpython-36.pyc byte-compiling /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/tests/test_descriptors.py to test_descriptors.cpython-36.pyc writing byte-compilation script '/tmp/tmpdyx07nm1.py' /usr/local/bin/python3.6 /tmp/tmpdyx07nm1.py removing /tmp/tmpdyx07nm1.py running install_egg_info running egg_info creating oddt.egg-info writing oddt.egg-info/PKG-INFO writing dependency_links to oddt.egg-info/dependency_links.txt writing requirements to oddt.egg-info/requires.txt writing top-level names to oddt.egg-info/top_level.txt writing manifest file 'oddt.egg-info/SOURCES.txt' reading manifest file 'oddt.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'oddt.egg-info/SOURCES.txt' Copying oddt.egg-info to /construction/science/py-oddt/stage/usr/local/lib/python3.6/site-packages/oddt-0.5-py3.6.egg-info running install_scripts copying build/scripts-3.6/oddt_cli -> /construction/science/py-oddt/stage/usr/local/bin changing mode of /construction/science/py-oddt/stage/usr/local/bin/oddt_cli to 755 writing list of installed files to '/construction/science/py-oddt/.PLIST.pymodtmp' /construction/science/py-oddt/oddt-0.6/oddt/__init__.py:50: UserWarning: No toolkit is present. Install OpenBabel or RDKit warnings.warn('No toolkit is present. Install OpenBabel or RDKit') ===> Creating unique files: Move MAN files needing SUFFIX ===> Creating unique files: Move files needing SUFFIX Move: bin/oddt_cli --> bin/oddt_cli-3.6 Link: @bin/oddt_cli --> bin/oddt_cli-3.6 ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for py36-oddt-0.6_2 file sizes/checksums [150]: .. done packing files [150]: .. done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Saturday, 7 DEC 2019 at 23:48:42 UTC Duration: 00:02:50