=> Building science/py-netCDF4@py37 Started : Friday, 14 FEB 2020 at 07:52:30 UTC Platform: 5.7-DEVELOPMENT DragonFly v5.7.0.1432.g9cd86-DEVELOPMENT #23: Thu Feb 13 14:43:04 PST 2020 root@sting.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.7-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.7-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- ===> The following configuration options are available for py37-netCDF4-1.3.1_7: DOCS=on: Build and/or install documentation EXAMPLES=on: Build and/or install examples ===> Use 'make config' to modify these settings -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- PYTHON="/usr/local/bin/python3.7" XDG_DATA_HOME=/construction/science/py-netCDF4 XDG_CONFIG_HOME=/construction/science/py-netCDF4 HOME=/construction/science/py-netCDF4 TMPDIR="/tmp" PATH=/construction/science/py-netCDF4/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- XDG_DATA_HOME=/construction/science/py-netCDF4 XDG_CONFIG_HOME=/construction/science/py-netCDF4 HOME=/construction/science/py-netCDF4 TMPDIR="/tmp" PATH=/construction/science/py-netCDF4/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/science/py-netCDF4/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- PORTDOCS="" PORTEXAMPLES="" PYTHON_INCLUDEDIR=include/python3.7m PYTHON_LIBDIR=lib/python3.7 PYTHON_PLATFORM=dragonfly5 PYTHON_SITELIBDIR=lib/python3.7/site-packages PYTHON_SUFFIX=37 PYTHON_VER=3.7 PYTHON_VERSION=python3.7 PYTHON2="@comment " PYTHON3="" OSREL=5.7 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/py37-netCDF4" EXAMPLESDIR="share/examples/py37-netCDF4" DATADIR="share/py37-netCDF4" WWWDIR="www/py37-netCDF4" ETCDIR="etc/py37-netCDF4" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/py37-netCDF4 DOCSDIR=/usr/local/share/doc/py37-netCDF4 EXAMPLESDIR=/usr/local/share/examples/py37-netCDF4 WWWDIR=/usr/local/www/py37-netCDF4 ETCDIR=/usr/local/etc/py37-netCDF4 -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=LiveSystem USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=15 DPORTS_BUILDER= yes DISABLE_LICENSES= yes DEFAULT_VERSIONS= ssl=openssl FORCE_PACKAGE= yes DEVELOPER= yes HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.30.1 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=32 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500709 OSVERSION=9999999 OSREL=5.7 _OSRELEASE=5.7-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> py37-netCDF4-1.3.1_7 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.12.0_1.txz Installing pkg-1.12.0_1... Extracting pkg-1.12.0_1: .......... done ===> py37-netCDF4-1.3.1_7 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py37-netCDF4-1.3.1_7 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- => Unidata-netcdf4-python-v1.3.1rel_GH0.tar.gz doesn't seem to exist in /distfiles/. => Attempting to fetch https://codeload.github.com/Unidata/netcdf4-python/tar.gz/v1.3.1rel?dummy=/Unidata-netcdf4-python-v1.3.1rel_GH0.tar.gz fetch: https://codeload.github.com/Unidata/netcdf4-python/tar.gz/v1.3.1rel?dummy=/Unidata-netcdf4-python-v1.3.1rel_GH0.tar.gz: size unknown fetch: https://codeload.github.com/Unidata/netcdf4-python/tar.gz/v1.3.1rel?dummy=/Unidata-netcdf4-python-v1.3.1rel_GH0.tar.gz: size of remote file is not known Unidata-netcdf4-python-v1.3.1rel_GH0.tar.gz 541 kB 801 kBps 00s ===> Fetching all distfiles required by py37-netCDF4-1.3.1_7 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> Fetching all distfiles required by py37-netCDF4-1.3.1_7 for building => SHA256 Checksum OK for Unidata-netcdf4-python-v1.3.1rel_GH0.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> Fetching all distfiles required by py37-netCDF4-1.3.1_7 for building ===> Extracting for py37-netCDF4-1.3.1_7 => SHA256 Checksum OK for Unidata-netcdf4-python-v1.3.1rel_GH0.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for py37-netCDF4-1.3.1_7 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> py37-netCDF4-1.3.1_7 depends on package: py37-numpy>=1.15,1<1.19,1 - not found ===> Installing existing package /packages/All/py37-numpy-1.16.5_4,1.txz Installing py37-numpy-1.16.5_4,1... `-- Installing gcc8-8.3.0_3... | `-- Installing binutils-2.33.1_2,1... | | `-- Installing gettext-runtime-0.20.1... | | `-- Installing indexinfo-0.3.1... | | `-- Extracting indexinfo-0.3.1: . done | | `-- Extracting gettext-runtime-0.20.1: .......... done | `-- Extracting binutils-2.33.1_2,1: .......... done | `-- Installing gmp-6.1.2_1... | `-- Extracting gmp-6.1.2_1: .......... done | `-- Installing mpc-1.1.0_2... | | `-- Installing mpfr-4.0.2... | | `-- Extracting mpfr-4.0.2: .......... done | `-- Extracting mpc-1.1.0_2: ...... done `-- Extracting gcc8-8.3.0_3: .......... done `-- Installing openblas-0.3.7_2,1... `-- Extracting openblas-0.3.7_2,1: .......... done `-- Installing py37-setuptools-44.0.0... | `-- Installing python37-3.7.6... | | `-- Installing expat-2.2.8... | | `-- Extracting expat-2.2.8: .......... done | | `-- Installing libffi-3.2.1_3... | | `-- Extracting libffi-3.2.1_3: .......... done | | `-- Installing ncurses-6.1.20190525... | | `-- Extracting ncurses-6.1.20190525: .......... done | | `-- Installing openssl-1.1.1d,1... | | `-- Extracting openssl-1.1.1d,1: .......... done | | `-- Installing readline-8.0.1... | | `-- Extracting readline-8.0.1: .......... done | `-- Extracting python37-3.7.6: .......... done `-- Extracting py37-setuptools-44.0.0: .......... done `-- Installing suitesparse-5.4.0_5... | `-- Installing metis-5.1.0_8... | `-- Extracting metis-5.1.0_8: .......... done | `-- Installing tbb-2020.1... | `-- Extracting tbb-2020.1: .......... done `-- Extracting suitesparse-5.4.0_5: .......... done Extracting py37-numpy-1.16.5_4,1: .......... done ===== Message from gcc8-8.3.0_3: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===== Message from python37-3.7.6: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py37-gdbm databases/py-gdbm@py37 py37-sqlite3 databases/py-sqlite3@py37 py37-tkinter x11-toolkits/py-tkinter@py37 ===> py37-netCDF4-1.3.1_7 depends on package: py37-numpy>=1.15,1<1.19,1 - found ===> Returning to build of py37-netCDF4-1.3.1_7 ===> py37-netCDF4-1.3.1_7 depends on executable: cython-3.7 - not found ===> Installing existing package /packages/All/py37-cython-0.29.13_1.txz Installing py37-cython-0.29.13_1... Extracting py37-cython-0.29.13_1: .......... done ===> py37-netCDF4-1.3.1_7 depends on executable: cython-3.7 - found ===> Returning to build of py37-netCDF4-1.3.1_7 ===> py37-netCDF4-1.3.1_7 depends on package: py37-setuptools>0 - found ===> py37-netCDF4-1.3.1_7 depends on file: /usr/local/bin/python3.7 - found -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- ===> py37-netCDF4-1.3.1_7 depends on shared library: libhdf5.so - not found ===> Installing existing package /packages/All/hdf5-1.10.6.txz Installing hdf5-1.10.6... `-- Installing hdf-szip-2.1.1... `-- Extracting hdf-szip-2.1.1: ....... done Extracting hdf5-1.10.6: .......... done ===> py37-netCDF4-1.3.1_7 depends on shared library: libhdf5.so - found (/usr/local/lib/libhdf5.so) ===> Returning to build of py37-netCDF4-1.3.1_7 ===> py37-netCDF4-1.3.1_7 depends on shared library: libnetcdf.so - not found ===> Installing existing package /packages/All/netcdf-4.7.3.txz Installing netcdf-4.7.3... `-- Installing curl-7.68.0... | `-- Installing ca_root_nss-3.50... | `-- Extracting ca_root_nss-3.50: ..... done | `-- Installing libnghttp2-1.40.0... | `-- Extracting libnghttp2-1.40.0: ....... done `-- Extracting curl-7.68.0: .......... done `-- Installing pkgconf-1.6.3,1... `-- Extracting pkgconf-1.6.3,1: .......... done Extracting netcdf-4.7.3: .......... done ===== Message from ca_root_nss-3.50: -- FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem ===> py37-netCDF4-1.3.1_7 depends on shared library: libnetcdf.so - found (/usr/local/lib/libnetcdf.so) ===> Returning to build of py37-netCDF4-1.3.1_7 -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for py37-netCDF4-1.3.1_7 Package hdf5 was not found in the pkg-config search path. Perhaps you should add the directory containing `hdf5.pc' to the PKG_CONFIG_PATH environment variable Package 'hdf5', required by 'virtual:world', not found reading from setup.cfg... using nc-config ... HDF5 library version: 1.10.6 found in None using netcdf library version b'4.7.3' using Cython to compile netCDF4.pyx... netcdf lib has group rename capability netcdf lib has nc_inq_path function netcdf lib has nc_inq_format_extended function netcdf lib has nc_open_mem function netcdf lib has cdf-5 format capability netcdf lib does not have netcdf4 parallel functions running config setup.py:171: DeprecationWarning: The SafeConfigParser class has been renamed to ConfigParser in Python 3.2. This alias will be removed in future versions. Use ConfigParser directly instead. config = configparser.SafeConfigParser() -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for py37-netCDF4-1.3.1_7 Package hdf5 was not found in the pkg-config search path. Perhaps you should add the directory containing `hdf5.pc' to the PKG_CONFIG_PATH environment variable Package 'hdf5', required by 'virtual:world', not found reading from setup.cfg... using nc-config ... HDF5 library version: 1.10.6 found in None using netcdf library version b'4.7.3' using Cython to compile netCDF4.pyx... netcdf lib has group rename capability netcdf lib has nc_inq_path function netcdf lib has nc_inq_format_extended function netcdf lib has nc_open_mem function netcdf lib has cdf-5 format capability netcdf lib does not have netcdf4 parallel functions running build running build_py creating build creating build/lib.dragonfly-5.7-SYNTH-x86_64-3.7 creating build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/netcdftime copying netcdftime/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/netcdftime creating build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/netCDF4 copying netCDF4/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/netCDF4 copying netCDF4/utils.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/netCDF4 running build_ext cythoning netCDF4/_netCDF4.pyx to netCDF4/_netCDF4.c building 'netCDF4._netCDF4' extension creating build/temp.dragonfly-5.7-SYNTH-x86_64-3.7 creating build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/netCDF4 cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include -I/usr/local/include -I/usr/local/lib/python3.7/site-packages/numpy/core/include -Iinclude -I/usr/local/include/python3.7m -c netCDF4/_netCDF4.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/netCDF4/_netCDF4.o In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from netCDF4/_netCDF4.c:602: /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ netCDF4/_netCDF4.c: In function '__pyx_f_7netCDF4_8_netCDF4__set_att': netCDF4/_netCDF4.c:7438:97: warning: passing argument 5 of 'nc_put_att_string' from incompatible pointer type [-Wincompatible-pointer-types] __pyx_v_ierr = nc_put_att_string(__pyx_t_5, __pyx_v_varid, __pyx_v_attname, __pyx_t_10, __pyx_v_string_ptrs); ^~~~~~~~~~~~~~~~~~~ In file included from netCDF4/_netCDF4.c:600: /usr/local/include/netcdf.h:1032:44: note: expected 'const char **' but argument is of type 'char **' size_t len, const char **op); ~~~~~~~~~~~~~^~ netCDF4/_netCDF4.c:7827:94: warning: passing argument 5 of 'nc_put_att_string' from incompatible pointer type [-Wincompatible-pointer-types] __pyx_v_ierr = nc_put_att_string(__pyx_t_14, __pyx_v_varid, __pyx_v_attname, 1, (&__pyx_v_datstring)); ~^~~~~~~~~~~~~~~~~~~ In file included from netCDF4/_netCDF4.c:600: /usr/local/include/netcdf.h:1032:44: note: expected 'const char **' but argument is of type 'char **' size_t len, const char **op); ~~~~~~~~~~~~~^~ netCDF4/_netCDF4.c: In function '__pyx_f_7netCDF4_8_netCDF4__read_compound': netCDF4/_netCDF4.c:55870:35: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] for (__pyx_v_nf = 0; __pyx_v_nf < __pyx_t_4; __pyx_v_nf++) { ^ netCDF4/_netCDF4.c: In function '__pyx_f_7netCDF4_8_netCDF4__read_enum': netCDF4/_netCDF4.c:59689:39: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] for (__pyx_v_nmem = 0; __pyx_v_nmem < __pyx_t_11; __pyx_v_nmem++) { ^ netCDF4/_netCDF4.c: In function '__pyx_pymod_exec__netCDF4': netCDF4/_netCDF4.c:80870:3: warning: returning 'void *' from a function with return type 'int' makes integer from pointer without a cast [-Wint-conversion] import_array(); ^~~~~~~~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/netCDF4/_netCDF4.o -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -R/usr/local/lib -R/usr/local/lib -lnetcdf -lhdf5_hl -lhdf5 -lpython3.7m -o build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/netCDF4/_netCDF4.so cythoning netcdftime/_netcdftime.pyx to netcdftime/_netcdftime.c building 'netcdftime._netcdftime' extension creating build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/netcdftime cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python3.7m -c netcdftime/_netcdftime.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/netcdftime/_netcdftime.o cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/netcdftime/_netcdftime.o -L/usr/local/lib -lpython3.7m -o build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/netcdftime/_netcdftime.so setup.py:171: DeprecationWarning: The SafeConfigParser class has been renamed to ConfigParser in Python 3.2. This alias will be removed in future versions. Use ConfigParser directly instead. config = configparser.SafeConfigParser() /usr/local/lib/python3.7/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /construction/science/py-netCDF4/netcdf4-python-1.3.1rel/netCDF4/_netCDF4.pyx tree = Parsing.p_module(s, pxd, full_module_name) warning: netCDF4/_netCDF4.pyx:1887:12: Unreachable code /usr/local/lib/python3.7/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /construction/science/py-netCDF4/netcdf4-python-1.3.1rel/netcdftime/_netcdftime.pyx tree = Parsing.p_module(s, pxd, full_module_name) -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- ===> py37-netCDF4-1.3.1_7 depends on package: py37-numpy>=1.15,1<1.19,1 - found ===> py37-netCDF4-1.3.1_7 depends on executable: cython-3.7 - found ===> py37-netCDF4-1.3.1_7 depends on package: py37-setuptools>0 - found ===> py37-netCDF4-1.3.1_7 depends on file: /usr/local/bin/python3.7 - found -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for py37-netCDF4-1.3.1_7 ===> Generating temporary packing list Package hdf5 was not found in the pkg-config search path. Perhaps you should add the directory containing `hdf5.pc' to the PKG_CONFIG_PATH environment variable Package 'hdf5', required by 'virtual:world', not found reading from setup.cfg... using nc-config ... HDF5 library version: 1.10.6 found in None using netcdf library version b'4.7.3' using Cython to compile netCDF4.pyx... netcdf lib has group rename capability netcdf lib has nc_inq_path function netcdf lib has nc_inq_format_extended function netcdf lib has nc_open_mem function netcdf lib has cdf-5 format capability netcdf lib does not have netcdf4 parallel functions running install running build running build_py running build_ext cythoning netCDF4/_netCDF4.pyx to netCDF4/_netCDF4.c building 'netCDF4._netCDF4' extension cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include -I/usr/local/include -I/usr/local/lib/python3.7/site-packages/numpy/core/include -Iinclude -I/usr/local/include/python3.7m -c netCDF4/_netCDF4.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/netCDF4/_netCDF4.o In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from netCDF4/_netCDF4.c:602: /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ netCDF4/_netCDF4.c: In function '__pyx_f_7netCDF4_8_netCDF4__set_att': netCDF4/_netCDF4.c:7438:97: warning: passing argument 5 of 'nc_put_att_string' from incompatible pointer type [-Wincompatible-pointer-types] __pyx_v_ierr = nc_put_att_string(__pyx_t_5, __pyx_v_varid, __pyx_v_attname, __pyx_t_10, __pyx_v_string_ptrs); ^~~~~~~~~~~~~~~~~~~ In file included from netCDF4/_netCDF4.c:600: /usr/local/include/netcdf.h:1032:44: note: expected 'const char **' but argument is of type 'char **' size_t len, const char **op); ~~~~~~~~~~~~~^~ netCDF4/_netCDF4.c:7827:94: warning: passing argument 5 of 'nc_put_att_string' from incompatible pointer type [-Wincompatible-pointer-types] __pyx_v_ierr = nc_put_att_string(__pyx_t_14, __pyx_v_varid, __pyx_v_attname, 1, (&__pyx_v_datstring)); ~^~~~~~~~~~~~~~~~~~~ In file included from netCDF4/_netCDF4.c:600: /usr/local/include/netcdf.h:1032:44: note: expected 'const char **' but argument is of type 'char **' size_t len, const char **op); ~~~~~~~~~~~~~^~ netCDF4/_netCDF4.c: In function '__pyx_f_7netCDF4_8_netCDF4__read_compound': netCDF4/_netCDF4.c:55870:35: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] for (__pyx_v_nf = 0; __pyx_v_nf < __pyx_t_4; __pyx_v_nf++) { ^ netCDF4/_netCDF4.c: In function '__pyx_f_7netCDF4_8_netCDF4__read_enum': netCDF4/_netCDF4.c:59689:39: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] for (__pyx_v_nmem = 0; __pyx_v_nmem < __pyx_t_11; __pyx_v_nmem++) { ^ netCDF4/_netCDF4.c: In function '__pyx_pymod_exec__netCDF4': netCDF4/_netCDF4.c:80870:3: warning: returning 'void *' from a function with return type 'int' makes integer from pointer without a cast [-Wint-conversion] import_array(); ^~~~~~~~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/netCDF4/_netCDF4.o -L/usr/local/lib -L/usr/local/lib -L/usr/local/lib -R/usr/local/lib -R/usr/local/lib -lnetcdf -lhdf5_hl -lhdf5 -lpython3.7m -o build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/netCDF4/_netCDF4.so cythoning netcdftime/_netcdftime.pyx to netcdftime/_netcdftime.c building 'netcdftime._netcdftime' extension cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python3.7m -c netcdftime/_netcdftime.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/netcdftime/_netcdftime.o cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/netcdftime/_netcdftime.o -L/usr/local/lib -lpython3.7m -o build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/netcdftime/_netcdftime.so running install_lib creating /construction/science/py-netCDF4/stage/usr/local/lib/python3.7 creating /construction/science/py-netCDF4/stage/usr/local/lib/python3.7/site-packages creating /construction/science/py-netCDF4/stage/usr/local/lib/python3.7/site-packages/netCDF4 copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/netCDF4/_netCDF4.so -> /construction/science/py-netCDF4/stage/usr/local/lib/python3.7/site-packages/netCDF4 copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/netCDF4/__init__.py -> /construction/science/py-netCDF4/stage/usr/local/lib/python3.7/site-packages/netCDF4 copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/netCDF4/utils.py -> /construction/science/py-netCDF4/stage/usr/local/lib/python3.7/site-packages/netCDF4 creating /construction/science/py-netCDF4/stage/usr/local/lib/python3.7/site-packages/netcdftime copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/netcdftime/__init__.py -> /construction/science/py-netCDF4/stage/usr/local/lib/python3.7/site-packages/netcdftime copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/netcdftime/_netcdftime.so -> /construction/science/py-netCDF4/stage/usr/local/lib/python3.7/site-packages/netcdftime byte-compiling /construction/science/py-netCDF4/stage/usr/local/lib/python3.7/site-packages/netCDF4/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-netCDF4/stage/usr/local/lib/python3.7/site-packages/netCDF4/utils.py to utils.cpython-37.pyc byte-compiling /construction/science/py-netCDF4/stage/usr/local/lib/python3.7/site-packages/netcdftime/__init__.py to __init__.cpython-37.pyc writing byte-compilation script '/tmp/tmp_y2gxwmu.py' /usr/local/bin/python3.7 /tmp/tmp_y2gxwmu.py removing /tmp/tmp_y2gxwmu.py running install_egg_info running egg_info creating netCDF4.egg-info writing netCDF4.egg-info/PKG-INFO writing dependency_links to netCDF4.egg-info/dependency_links.txt writing entry points to netCDF4.egg-info/entry_points.txt writing requirements to netCDF4.egg-info/requires.txt writing top-level names to netCDF4.egg-info/top_level.txt writing manifest file 'netCDF4.egg-info/SOURCES.txt' reading manifest file 'netCDF4.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'netCDF4.egg-info/SOURCES.txt' Copying netCDF4.egg-info to /construction/science/py-netCDF4/stage/usr/local/lib/python3.7/site-packages/netCDF4-1.3.1-py3.7.egg-info running install_scripts Installing nc3tonc4 script to /construction/science/py-netCDF4/stage/usr/local/bin Installing nc4tonc3 script to /construction/science/py-netCDF4/stage/usr/local/bin Installing ncinfo script to /construction/science/py-netCDF4/stage/usr/local/bin writing list of installed files to '/construction/science/py-netCDF4/.PLIST.pymodtmp' setup.py:171: DeprecationWarning: The SafeConfigParser class has been renamed to ConfigParser in Python 3.2. This alias will be removed in future versions. Use ConfigParser directly instead. config = configparser.SafeConfigParser() /usr/local/lib/python3.7/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /construction/science/py-netCDF4/netcdf4-python-1.3.1rel/netCDF4/_netCDF4.pyx tree = Parsing.p_module(s, pxd, full_module_name) warning: netCDF4/_netCDF4.pyx:1887:12: Unreachable code /usr/local/lib/python3.7/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /construction/science/py-netCDF4/netcdf4-python-1.3.1rel/netcdftime/_netcdftime.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/bin/strip /construction/science/py-netCDF4/stage/usr/local/lib/python3.7/site-packages/netCDF4/_netCDF4.so /usr/bin/strip /construction/science/py-netCDF4/stage/usr/local/lib/python3.7/site-packages/netcdftime/_netcdftime.so (cd /construction/science/py-netCDF4/netcdf4-python-1.3.1rel/docs && /bin/sh -c '(/usr/bin/find -Ed $1 $3 | /usr/bin/cpio -dumpl $2 >/dev/null 2>&1) && /usr/bin/find -Ed $1 $3 \( -type d -exec /bin/sh -c '\''cd '\''$2'\'' && chmod 755 "$@"'\'' . {} + -o -type f -exec /bin/sh -c '\''cd '\''$2'\'' && chmod 0644 "$@"'\'' . {} + \)' COPYTREE_SHARE . /construction/science/py-netCDF4/stage/usr/local/share/doc/py37-netCDF4) (cd /construction/science/py-netCDF4/netcdf4-python-1.3.1rel/examples && install -m 0644 * /construction/science/py-netCDF4/stage/usr/local/share/examples/py37-netCDF4) ===> Creating unique files: Move MAN files needing SUFFIX ===> Creating unique files: Move files needing SUFFIX Move: bin/nc3tonc4 --> bin/nc3tonc4-3.7 Link: @bin/nc3tonc4 --> bin/nc3tonc4-3.7 Move: bin/nc4tonc3 --> bin/nc4tonc3-3.7 Link: @bin/nc4tonc3 --> bin/nc4tonc3-3.7 Move: bin/ncinfo --> bin/ncinfo-3.7 Link: @bin/ncinfo --> bin/ncinfo-3.7 ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Error: /usr/local/lib/python3.7/site-packages/netCDF4/_netCDF4.so is linked to /usr/local/lib/libcurl.so.4 from ftp/curl but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libcurl.so:ftp/curl Error: /usr/local/lib/python3.7/site-packages/netCDF4/_netCDF4.so is linked to /usr/local/lib/libsz.so.2 from science/szip but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libsz.so:science/szip Error: /usr/local/lib/python3.7/site-packages/netCDF4/_netCDF4.so is linked to /usr/local/lib/libintl.so.8 from devel/gettext-runtime but it is not declared as a dependency Warning: you need USES+=gettext-runtime Error: /usr/local/lib/python3.7/site-packages/netCDF4/_netCDF4.so is linked to /usr/local/lib/libnghttp2.so.14 from www/libnghttp2 but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libnghttp2.so:www/libnghttp2 Error: /usr/local/lib/python3.7/site-packages/netCDF4/_netCDF4.so is linked to /usr/local/lib/libssl.so.11 from security/openssl but it is not declared as a dependency Warning: you need USES=ssl Error: /usr/local/lib/python3.7/site-packages/netCDF4/_netCDF4.so is linked to /usr/local/lib/libcrypto.so.11 from security/openssl but it is not declared as a dependency Warning: you need USES=ssl Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for py37-netCDF4-1.3.1_7 file sizes/checksums [38]: . done packing files [38]: . done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Saturday, 15 FEB 2020 at 08:04:00 UTC Duration: 00:11:29