=> Building science/py-h5py@py37 Started : Friday, 14 FEB 2020 at 07:50:01 UTC Platform: 5.7-DEVELOPMENT DragonFly v5.7.0.1432.g9cd86-DEVELOPMENT #23: Thu Feb 13 14:43:04 PST 2020 root@sting.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.7-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.7-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- ===> The following configuration options are available for py37-h5py-2.10.0: DOCS=on: Build and/or install documentation EXAMPLES=on: Build and/or install examples ===> Use 'make config' to modify these settings -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- PKG_CONFIG=pkgconf PYTHON="/usr/local/bin/python3.7" XDG_DATA_HOME=/construction/science/py-h5py XDG_CONFIG_HOME=/construction/science/py-h5py HOME=/construction/science/py-h5py TMPDIR="/tmp" PATH=/construction/science/py-h5py/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- XDG_DATA_HOME=/construction/science/py-h5py XDG_CONFIG_HOME=/construction/science/py-h5py HOME=/construction/science/py-h5py TMPDIR="/tmp" PATH=/construction/science/py-h5py/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/science/py-h5py/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- PORTDOCS="" PORTEXAMPLES="" PYTHON_INCLUDEDIR=include/python3.7m PYTHON_LIBDIR=lib/python3.7 PYTHON_PLATFORM=dragonfly5 PYTHON_SITELIBDIR=lib/python3.7/site-packages PYTHON_SUFFIX=37 PYTHON_VER=3.7 PYTHON_VERSION=python3.7 PYTHON2="@comment " PYTHON3="" OSREL=5.7 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/py37-h5py" EXAMPLESDIR="share/examples/py37-h5py" DATADIR="share/py37-h5py" WWWDIR="www/py37-h5py" ETCDIR="etc/py37-h5py" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/py37-h5py DOCSDIR=/usr/local/share/doc/py37-h5py EXAMPLESDIR=/usr/local/share/examples/py37-h5py WWWDIR=/usr/local/www/py37-h5py ETCDIR=/usr/local/etc/py37-h5py -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=LiveSystem USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=15 DPORTS_BUILDER= yes DISABLE_LICENSES= yes DEFAULT_VERSIONS= ssl=openssl FORCE_PACKAGE= yes DEVELOPER= yes HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.30.1 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=32 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500709 OSVERSION=9999999 OSREL=5.7 _OSRELEASE=5.7-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> py37-h5py-2.10.0 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.12.0_1.txz Installing pkg-1.12.0_1... Extracting pkg-1.12.0_1: .......... done ===> py37-h5py-2.10.0 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py37-h5py-2.10.0 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- ===> Fetching all distfiles required by py37-h5py-2.10.0 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> Fetching all distfiles required by py37-h5py-2.10.0 for building => SHA256 Checksum OK for h5py-2.10.0.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> Fetching all distfiles required by py37-h5py-2.10.0 for building ===> Extracting for py37-h5py-2.10.0 => SHA256 Checksum OK for h5py-2.10.0.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for py37-h5py-2.10.0 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> py37-h5py-2.10.0 depends on package: py37-pkgconfig>=0 - not found ===> Installing existing package /packages/All/py37-pkgconfig-1.5.1,1.txz Installing py37-pkgconfig-1.5.1,1... `-- Installing py37-setuptools-44.0.0... | `-- Installing python37-3.7.6... | | `-- Installing expat-2.2.8... | | `-- Extracting expat-2.2.8: .......... done | | `-- Installing gettext-runtime-0.20.1... | | `-- Installing indexinfo-0.3.1... | | `-- Extracting indexinfo-0.3.1: . done | | `-- Extracting gettext-runtime-0.20.1: .......... done | | `-- Installing libffi-3.2.1_3... | | `-- Extracting libffi-3.2.1_3: .......... done | | `-- Installing ncurses-6.1.20190525... | | `-- Extracting ncurses-6.1.20190525: .......... done | | `-- Installing openssl-1.1.1d,1... | | `-- Extracting openssl-1.1.1d,1: .......... done | | `-- Installing readline-8.0.1... | | `-- Extracting readline-8.0.1: .......... done | `-- Extracting python37-3.7.6: .......... done `-- Extracting py37-setuptools-44.0.0: .......... done Extracting py37-pkgconfig-1.5.1,1: .......... done ===== Message from python37-3.7.6: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py37-gdbm databases/py-gdbm@py37 py37-sqlite3 databases/py-sqlite3@py37 py37-tkinter x11-toolkits/py-tkinter@py37 ===> py37-h5py-2.10.0 depends on package: py37-pkgconfig>=0 - found ===> Returning to build of py37-h5py-2.10.0 ===> py37-h5py-2.10.0 depends on package: py37-numpy>=1.15,1<1.19,1 - not found ===> Installing existing package /packages/All/py37-numpy-1.16.5_4,1.txz Installing py37-numpy-1.16.5_4,1... `-- Installing gcc8-8.3.0_3... | `-- Installing binutils-2.33.1_2,1... | `-- Extracting binutils-2.33.1_2,1: .......... done | `-- Installing gmp-6.1.2_1... | `-- Extracting gmp-6.1.2_1: .......... done | `-- Installing mpc-1.1.0_2... | | `-- Installing mpfr-4.0.2... | | `-- Extracting mpfr-4.0.2: .......... done | `-- Extracting mpc-1.1.0_2: ...... done `-- Extracting gcc8-8.3.0_3: .......... done `-- Installing openblas-0.3.7_2,1... `-- Extracting openblas-0.3.7_2,1: .......... done `-- Installing suitesparse-5.4.0_5... | `-- Installing metis-5.1.0_8... | `-- Extracting metis-5.1.0_8: .......... done | `-- Installing tbb-2020.1... | `-- Extracting tbb-2020.1: .......... done `-- Extracting suitesparse-5.4.0_5: .......... done Extracting py37-numpy-1.16.5_4,1: .......... done ===== Message from gcc8-8.3.0_3: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> py37-h5py-2.10.0 depends on package: py37-numpy>=1.15,1<1.19,1 - found ===> Returning to build of py37-h5py-2.10.0 ===> py37-h5py-2.10.0 depends on package: py37-six>=0 - not found ===> Installing existing package /packages/All/py37-six-1.14.0.txz Installing py37-six-1.14.0... Extracting py37-six-1.14.0: ....... done ===> py37-h5py-2.10.0 depends on package: py37-six>=0 - found ===> Returning to build of py37-h5py-2.10.0 ===> py37-h5py-2.10.0 depends on package: py37-setuptools>0 - found ===> py37-h5py-2.10.0 depends on file: /usr/local/bin/python3.7 - found ===> py37-h5py-2.10.0 depends on package: pkgconf>=1.3.0_1 - not found ===> Installing existing package /packages/All/pkgconf-1.6.3,1.txz Installing pkgconf-1.6.3,1... Extracting pkgconf-1.6.3,1: .......... done ===> py37-h5py-2.10.0 depends on package: pkgconf>=1.3.0_1 - found ===> Returning to build of py37-h5py-2.10.0 ===> py37-h5py-2.10.0 depends on executable: cython-3.7 - not found ===> Installing existing package /packages/All/py37-cython-0.29.13_1.txz Installing py37-cython-0.29.13_1... Extracting py37-cython-0.29.13_1: .......... done ===> py37-h5py-2.10.0 depends on executable: cython-3.7 - found ===> Returning to build of py37-h5py-2.10.0 ===> py37-h5py-2.10.0 depends on package: py37-setuptools>0 - found ===> py37-h5py-2.10.0 depends on file: /usr/local/bin/python3.7 - found -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- ===> py37-h5py-2.10.0 depends on shared library: libhdf5.so - not found ===> Installing existing package /packages/All/hdf5-1.10.6.txz Installing hdf5-1.10.6... `-- Installing hdf-szip-2.1.1... `-- Extracting hdf-szip-2.1.1: ....... done Extracting hdf5-1.10.6: .......... done ===> py37-h5py-2.10.0 depends on shared library: libhdf5.so - found (/usr/local/lib/libhdf5.so) ===> Returning to build of py37-h5py-2.10.0 -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for py37-h5py-2.10.0 running config -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for py37-h5py-2.10.0 running build running build_py creating build creating build/lib.dragonfly-5.7-SYNTH-x86_64-3.7 creating build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py copying h5py/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py copying h5py/highlevel.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py copying h5py/ipy_completer.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py copying h5py/version.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py copying h5py/h5py_warnings.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py creating build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/_hl copying h5py/_hl/vds.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/_hl copying h5py/_hl/filters.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/_hl copying h5py/_hl/compat.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/_hl copying h5py/_hl/datatype.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/_hl copying h5py/_hl/group.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/_hl copying h5py/_hl/base.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/_hl copying h5py/_hl/selections2.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/_hl copying h5py/_hl/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/_hl copying h5py/_hl/attrs.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/_hl copying h5py/_hl/files.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/_hl copying h5py/_hl/dims.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/_hl copying h5py/_hl/dataset.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/_hl copying h5py/_hl/selections.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/_hl creating build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests copying h5py/tests/test_dtype.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests copying h5py/tests/test_h5d_direct_chunk.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests copying h5py/tests/test_attrs.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests copying h5py/tests/test_h5p.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests copying h5py/tests/test_deprecation.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests copying h5py/tests/test_h5t.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests copying h5py/tests/test_file2.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests copying h5py/tests/test_threads.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests copying h5py/tests/test_group.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests copying h5py/tests/test_objects.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests copying h5py/tests/test_dataset.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests copying h5py/tests/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests copying h5py/tests/test_h5f.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests copying h5py/tests/test_dimension_scales.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests copying h5py/tests/test_datatype.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests copying h5py/tests/test_selections.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests copying h5py/tests/test_base.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests copying h5py/tests/test_dataset_swmr.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests copying h5py/tests/test_file_image.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests copying h5py/tests/test_file.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests copying h5py/tests/test_dataset_getitem.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests copying h5py/tests/test_h5pl.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests copying h5py/tests/test_attribute_create.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests copying h5py/tests/test_dims_dimensionproxy.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests copying h5py/tests/test_attrs_data.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests copying h5py/tests/test_filters.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests copying h5py/tests/test_h5.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests copying h5py/tests/test_slicing.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests copying h5py/tests/common.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests copying h5py/tests/test_completions.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests creating build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests/test_vds copying h5py/tests/test_vds/test_highlevel_vds.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests/test_vds copying h5py/tests/test_vds/test_lowlevel_vds.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests/test_vds copying h5py/tests/test_vds/test_virtual_source.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests/test_vds copying h5py/tests/test_vds/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests/test_vds running build_ext warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/h5fd.pxd:18:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/h5fd.pxd:19:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/h5fd.pxd:20:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/h5fd.pxd:21:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/h5fd.pxd:22:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/h5fd.pxd:23:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/h5fd.pxd:24:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/h5fd.pxd:25:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/h5fd.pxd:26:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/h5fd.pxd:31:8: 'H5FD_CORE' redeclared warning: h5py/h5fd.pxd:32:8: 'H5FD_FAMILY' redeclared warning: h5py/h5fd.pxd:34:8: 'H5FD_LOG' redeclared warning: h5py/h5fd.pxd:35:8: 'H5FD_MPIO' redeclared warning: h5py/h5fd.pxd:37:8: 'H5FD_MULTI' redeclared warning: h5py/h5fd.pxd:38:8: 'H5FD_SEC2' redeclared warning: h5py/h5fd.pxd:39:8: 'H5FD_STDIO' redeclared warning: h5py/h5fd.pxd:44:6: 'H5FD_LOG_LOC_READ' redeclared warning: h5py/h5fd.pxd:45:6: 'H5FD_LOG_LOC_WRITE' redeclared warning: h5py/h5fd.pxd:46:6: 'H5FD_LOG_LOC_SEEK' redeclared warning: h5py/h5fd.pxd:47:6: 'H5FD_LOG_LOC_IO' redeclared warning: h5py/h5fd.pxd:50:6: 'H5FD_LOG_FILE_READ' redeclared warning: h5py/h5fd.pxd:51:6: 'H5FD_LOG_FILE_WRITE' redeclared warning: h5py/h5fd.pxd:52:6: 'H5FD_LOG_FILE_IO' redeclared warning: h5py/h5fd.pxd:55:6: 'H5FD_LOG_FLAVOR' redeclared warning: h5py/h5fd.pxd:58:6: 'H5FD_LOG_NUM_READ' redeclared warning: h5py/h5fd.pxd:59:6: 'H5FD_LOG_NUM_WRITE' redeclared warning: h5py/h5fd.pxd:60:6: 'H5FD_LOG_NUM_SEEK' redeclared warning: h5py/h5fd.pxd:61:6: 'H5FD_LOG_NUM_IO' redeclared warning: h5py/h5fd.pxd:64:6: 'H5FD_LOG_TIME_OPEN' redeclared warning: h5py/h5fd.pxd:65:6: 'H5FD_LOG_TIME_READ' redeclared warning: h5py/h5fd.pxd:66:6: 'H5FD_LOG_TIME_WRITE' redeclared warning: h5py/h5fd.pxd:67:6: 'H5FD_LOG_TIME_SEEK' redeclared warning: h5py/h5fd.pxd:68:6: 'H5FD_LOG_TIME_CLOSE' redeclared warning: h5py/h5fd.pxd:69:6: 'H5FD_LOG_TIME_IO' redeclared warning: h5py/h5fd.pxd:72:6: 'H5FD_LOG_ALLOC' redeclared warning: h5py/h5fd.pxd:73:6: 'H5FD_LOG_ALL' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared Loading library to get version: /usr/local/lib/libhdf5.so Autodetected HDF5 1.10.6 ******************************************************************************** Summary of the h5py configuration Path to HDF5: None HDF5 Version: '1.10.6' MPI Enabled: False Rebuild Required: True ******************************************************************************** Executing api_gen rebuild of defs Executing cythonize() [ 1/23] Cythonizing /construction/science/py-h5py/h5py-2.10.0/h5py/_conv.pyx [ 2/23] Cythonizing /construction/science/py-h5py/h5py-2.10.0/h5py/_errors.pyx [ 3/23] Cythonizing /construction/science/py-h5py/h5py-2.10.0/h5py/_objects.pyx [ 4/23] Cythonizing /construction/science/py-h5py/h5py-2.10.0/h5py/_proxy.pyx [ 5/23] Cythonizing /construction/science/py-h5py/h5py-2.10.0/h5py/defs.pyx [ 6/23] Cythonizing /construction/science/py-h5py/h5py-2.10.0/h5py/h5.pyx [ 7/23] Cythonizing /construction/science/py-h5py/h5py-2.10.0/h5py/h5a.pyx [ 8/23] Cythonizing /construction/science/py-h5py/h5py-2.10.0/h5py/h5ac.pyx [ 9/23] Cythonizing /construction/science/py-h5py/h5py-2.10.0/h5py/h5d.pyx [10/23] Cythonizing /construction/science/py-h5py/h5py-2.10.0/h5py/h5ds.pyx [11/23] Cythonizing /construction/science/py-h5py/h5py-2.10.0/h5py/h5f.pyx [12/23] Cythonizing /construction/science/py-h5py/h5py-2.10.0/h5py/h5fd.pyx [13/23] Cythonizing /construction/science/py-h5py/h5py-2.10.0/h5py/h5g.pyx [14/23] Cythonizing /construction/science/py-h5py/h5py-2.10.0/h5py/h5i.pyx [15/23] Cythonizing /construction/science/py-h5py/h5py-2.10.0/h5py/h5l.pyx [16/23] Cythonizing /construction/science/py-h5py/h5py-2.10.0/h5py/h5o.pyx [17/23] Cythonizing /construction/science/py-h5py/h5py-2.10.0/h5py/h5p.pyx [18/23] Cythonizing /construction/science/py-h5py/h5py-2.10.0/h5py/h5pl.pyx [19/23] Cythonizing /construction/science/py-h5py/h5py-2.10.0/h5py/h5r.pyx [20/23] Cythonizing /construction/science/py-h5py/h5py-2.10.0/h5py/h5s.pyx [21/23] Cythonizing /construction/science/py-h5py/h5py-2.10.0/h5py/h5t.pyx [22/23] Cythonizing /construction/science/py-h5py/h5py-2.10.0/h5py/h5z.pyx [23/23] Cythonizing /construction/science/py-h5py/h5py-2.10.0/h5py/utils.pyx building 'h5py.defs' extension creating build/temp.dragonfly-5.7-SYNTH-x86_64-3.7 creating build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/construction creating build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/construction/science creating build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/construction/science/py-h5py creating build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/construction/science/py-h5py/h5py-2.10.0 creating build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/construction/science/py-h5py/h5py-2.10.0/h5py cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include/python3.7m -c /construction/science/py-h5py/h5py-2.10.0/h5py/defs.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/construction/science/py-h5py/h5py-2.10.0/h5py/defs.o In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.10.0/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.10.0/h5py/defs.c:645: /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ /construction/science/py-h5py/h5py-2.10.0/h5py/defs.c: In function '__pyx_f_4h5py_4defs_H5Pget_driver_info': /construction/science/py-h5py/h5py-2.10.0/h5py/defs.c:21214:13: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] __pyx_t_1 = H5Pget_driver_info(__pyx_v_plist_id); if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 2016, __pyx_L1_error) ^ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/construction/science/py-h5py/h5py-2.10.0/h5py/defs.o -L/opt/local/lib -L/usr/local/lib -L/usr/local/lib -R/opt/local/lib -R/usr/local/lib -lhdf5 -lhdf5_hl -lpython3.7m -o build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/defs.so building 'h5py._errors' extension cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include/python3.7m -c /construction/science/py-h5py/h5py-2.10.0/h5py/_errors.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/construction/science/py-h5py/h5py-2.10.0/h5py/_errors.o In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.10.0/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.10.0/h5py/_errors.c:645: /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ /construction/science/py-h5py/h5py-2.10.0/h5py/_errors.c: In function '__pyx_f_4h5py_7_errors_walk_cb': /construction/science/py-h5py/h5py-2.10.0/h5py/_errors.c:1326:13: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] __pyx_t_3 = (__pyx_v_desc[0]).desc; ^ /construction/science/py-h5py/h5py-2.10.0/h5py/_errors.c: In function '__pyx_f_4h5py_7_errors_set_exception': /construction/science/py-h5py/h5py-2.10.0/h5py/_errors.c:1615:13: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] __pyx_t_8 = __pyx_v_err.err.desc; ^ /construction/science/py-h5py/h5py-2.10.0/h5py/_errors.c:1698:13: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] __pyx_t_8 = __pyx_v_err.err.desc; ^ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/construction/science/py-h5py/h5py-2.10.0/h5py/_errors.o -L/opt/local/lib -L/usr/local/lib -L/usr/local/lib -R/opt/local/lib -R/usr/local/lib -lhdf5 -lhdf5_hl -lpython3.7m -o build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/_errors.so building 'h5py._objects' extension cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include/python3.7m -c /construction/science/py-h5py/h5py-2.10.0/h5py/_objects.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/construction/science/py-h5py/h5py-2.10.0/h5py/_objects.o In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.10.0/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.10.0/h5py/_objects.c:645: /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ /construction/science/py-h5py/h5py-2.10.0/h5py/_objects.c: In function '__pyx_pf_4h5py_8_objects_9FastRLock_6release': /construction/science/py-h5py/h5py-2.10.0/h5py/_objects.c:2570:38: warning: comparison of integer expressions of different signedness: 'long int' and 'long unsigned int' [-Wsign-compare] __pyx_t_1 = ((__pyx_v_self->_owner != PyThread_get_thread_ident()) != 0); ^~ /construction/science/py-h5py/h5py-2.10.0/h5py/_objects.c: In function '__pyx_pf_4h5py_8_objects_9FastRLock_10__exit__': /construction/science/py-h5py/h5py-2.10.0/h5py/_objects.c:2779:38: warning: comparison of integer expressions of different signedness: 'long int' and 'long unsigned int' [-Wsign-compare] __pyx_t_1 = ((__pyx_v_self->_owner != PyThread_get_thread_ident()) != 0); ^~ /construction/science/py-h5py/h5py-2.10.0/h5py/_objects.c: In function '__pyx_pf_4h5py_8_objects_9FastRLock_12_is_owned': /construction/science/py-h5py/h5py-2.10.0/h5py/_objects.c:2869:59: warning: comparison of integer expressions of different signedness: 'long int' and 'long unsigned int' [-Wsign-compare] __pyx_t_1 = __Pyx_PyBool_FromLong((__pyx_v_self->_owner == PyThread_get_thread_ident())); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 63, __pyx_L1_error) ^~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/construction/science/py-h5py/h5py-2.10.0/h5py/_objects.o -L/opt/local/lib -L/usr/local/lib -L/usr/local/lib -R/opt/local/lib -R/usr/local/lib -lhdf5 -lhdf5_hl -lpython3.7m -o build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/_objects.so building 'h5py._proxy' extension cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include/python3.7m -c /construction/science/py-h5py/h5py-2.10.0/h5py/_proxy.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/construction/science/py-h5py/h5py-2.10.0/h5py/_proxy.o In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.10.0/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.10.0/h5py/_proxy.c:645: /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/construction/science/py-h5py/h5py-2.10.0/h5py/_proxy.o -L/opt/local/lib -L/usr/local/lib -L/usr/local/lib -R/opt/local/lib -R/usr/local/lib -lhdf5 -lhdf5_hl -lpython3.7m -o build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/_proxy.so building 'h5py.h5fd' extension cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include/python3.7m -c /construction/science/py-h5py/h5py-2.10.0/h5py/h5fd.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/construction/science/py-h5py/h5py-2.10.0/h5py/h5fd.o In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.10.0/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.10.0/h5py/h5fd.c:645: /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ /construction/science/py-h5py/h5py-2.10.0/h5py/h5fd.c: In function '__pyx_f_4h5py_4h5fd_H5FD_fileobj_read': /construction/science/py-h5py/h5py-2.10.0/h5py/h5fd.c:3039:29: warning: comparison of integer expressions of different signedness: 'Py_ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] __pyx_t_6 = ((__pyx_t_9 == __pyx_v_size) != 0); ^~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/construction/science/py-h5py/h5py-2.10.0/h5py/h5fd.o -L/opt/local/lib -L/usr/local/lib -L/usr/local/lib -R/opt/local/lib -R/usr/local/lib -lhdf5 -lhdf5_hl -lpython3.7m -o build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/h5fd.so building 'h5py.h5z' extension creating build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/construction/science/py-h5py/h5py-2.10.0/lzf creating build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/construction/science/py-h5py/h5py-2.10.0/lzf/lzf cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include/python3.7m -c /construction/science/py-h5py/h5py-2.10.0/h5py/h5z.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/construction/science/py-h5py/h5py-2.10.0/h5py/h5z.o In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.10.0/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.10.0/h5py/h5z.c:648: /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include/python3.7m -c /construction/science/py-h5py/h5py-2.10.0/lzf/lzf_filter.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/construction/science/py-h5py/h5py-2.10.0/lzf/lzf_filter.o cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include/python3.7m -c /construction/science/py-h5py/h5py-2.10.0/lzf/lzf/lzf_c.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/construction/science/py-h5py/h5py-2.10.0/lzf/lzf/lzf_c.o cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include/python3.7m -c /construction/science/py-h5py/h5py-2.10.0/lzf/lzf/lzf_d.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/construction/science/py-h5py/h5py-2.10.0/lzf/lzf/lzf_d.o cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/construction/science/py-h5py/h5py-2.10.0/h5py/h5z.o build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/construction/science/py-h5py/h5py-2.10.0/lzf/lzf_filter.o build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/construction/science/py-h5py/h5py-2.10.0/lzf/lzf/lzf_c.o build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/construction/science/py-h5py/h5py-2.10.0/lzf/lzf/lzf_d.o -L/opt/local/lib -L/usr/local/lib -L/usr/local/lib -R/opt/local/lib -R/usr/local/lib -lhdf5 -lhdf5_hl -lpython3.7m -o build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/h5z.so building 'h5py.h5' extension cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include/python3.7m -c /construction/science/py-h5py/h5py-2.10.0/h5py/h5.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/construction/science/py-h5py/h5py-2.10.0/h5py/h5.o In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.10.0/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.10.0/h5py/h5.c:645: /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/construction/science/py-h5py/h5py-2.10.0/h5py/h5.o -L/opt/local/lib -L/usr/local/lib -L/usr/local/lib -R/opt/local/lib -R/usr/local/lib -lhdf5 -lhdf5_hl -lpython3.7m -o build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/h5.so building 'h5py.h5i' extension cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include/python3.7m -c /construction/science/py-h5py/h5py-2.10.0/h5py/h5i.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/construction/science/py-h5py/h5py-2.10.0/h5py/h5i.o In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.10.0/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.10.0/h5py/h5i.c:645: /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/construction/science/py-h5py/h5py-2.10.0/h5py/h5i.o -L/opt/local/lib -L/usr/local/lib -L/usr/local/lib -R/opt/local/lib -R/usr/local/lib -lhdf5 -lhdf5_hl -lpython3.7m -o build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/h5i.so building 'h5py.h5r' extension cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include/python3.7m -c /construction/science/py-h5py/h5py-2.10.0/h5py/h5r.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/construction/science/py-h5py/h5py-2.10.0/h5py/h5r.o In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.10.0/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.10.0/h5py/h5r.c:645: /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ /construction/science/py-h5py/h5py-2.10.0/h5py/h5r.c: In function '__pyx_pf_4h5py_3h5r_9Reference_2__nonzero__': /construction/science/py-h5py/h5py-2.10.0/h5py/h5r.c:2648:33: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_1; __pyx_v_i++) { ^ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/construction/science/py-h5py/h5py-2.10.0/h5py/h5r.o -L/opt/local/lib -L/usr/local/lib -L/usr/local/lib -R/opt/local/lib -R/usr/local/lib -lhdf5 -lhdf5_hl -lpython3.7m -o build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/h5r.so building 'h5py.utils' extension cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include/python3.7m -c /construction/science/py-h5py/h5py-2.10.0/h5py/utils.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/construction/science/py-h5py/h5py-2.10.0/h5py/utils.o In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.10.0/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.10.0/h5py/utils.c:647: /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ /construction/science/py-h5py/h5py-2.10.0/h5py/utils.c: In function '__pyx_f_4h5py_5utils_convert_tuple': /construction/science/py-h5py/h5py-2.10.0/h5py/utils.c:2152:27: warning: comparison of integer expressions of different signedness: 'Py_ssize_t' {aka 'long int'} and 'hsize_t' {aka 'long long unsigned int'} [-Wsign-compare] __pyx_t_2 = ((__pyx_t_1 != __pyx_v_rank) != 0); ^~ /construction/science/py-h5py/h5py-2.10.0/h5py/utils.c:2201:37: warning: comparison of integer expressions of different signedness: 'int' and 'hsize_t' {aka 'long long unsigned int'} [-Wsign-compare] for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_7; __pyx_v_i++) { ^ /construction/science/py-h5py/h5py-2.10.0/h5py/utils.c: In function '__pyx_f_4h5py_5utils_convert_dims': /construction/science/py-h5py/h5py-2.10.0/h5py/utils.c:2366:33: warning: comparison of integer expressions of different signedness: 'int' and 'hsize_t' {aka 'long long unsigned int'} [-Wsign-compare] for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_2; __pyx_v_i++) { ^ /construction/science/py-h5py/h5py-2.10.0/h5py/utils.c: In function '__pyx_pymod_exec_utils': /construction/science/py-h5py/h5py-2.10.0/h5py/utils.c:3470:3: warning: returning 'void *' from a function with return type 'int' makes integer from pointer without a cast [-Wint-conversion] import_array(); ^~~~~~~~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/construction/science/py-h5py/h5py-2.10.0/h5py/utils.o -L/opt/local/lib -L/usr/local/lib -L/usr/local/lib -R/opt/local/lib -R/usr/local/lib -lhdf5 -lhdf5_hl -lpython3.7m -o build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/utils.so building 'h5py._conv' extension cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include/python3.7m -c /construction/science/py-h5py/h5py-2.10.0/h5py/_conv.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/construction/science/py-h5py/h5py-2.10.0/h5py/_conv.o In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.10.0/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.10.0/h5py/_conv.c:646: /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ /construction/science/py-h5py/h5py-2.10.0/h5py/_conv.c: In function '__pyx_f_4h5py_5_conv_generic_converter': /construction/science/py-h5py/h5py-2.10.0/h5py/_conv.c:2194:39: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_6; __pyx_v_i++) { ^ /construction/science/py-h5py/h5py-2.10.0/h5py/_conv.c:2257:37: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_6; __pyx_v_i++) { ^ /construction/science/py-h5py/h5py-2.10.0/h5py/_conv.c: In function '__pyx_f_4h5py_5_conv_enum_int_converter_conv': /construction/science/py-h5py/h5py-2.10.0/h5py/_conv.c:5294:37: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_4; __pyx_v_i++) { ^ /construction/science/py-h5py/h5py-2.10.0/h5py/_conv.c:5355:37: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_4; __pyx_v_i++) { ^ /construction/science/py-h5py/h5py-2.10.0/h5py/_conv.c: In function '__pyx_f_4h5py_5_conv_vlen2ndarray': /construction/science/py-h5py/h5py-2.10.0/h5py/_conv.c:6021:39: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_7; __pyx_v_i++) { ^ /construction/science/py-h5py/h5py-2.10.0/h5py/_conv.c:6084:37: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_7; __pyx_v_i++) { ^ /construction/science/py-h5py/h5py-2.10.0/h5py/_conv.c: In function '__pyx_f_4h5py_5_conv_ndarray2vlen': /construction/science/py-h5py/h5py-2.10.0/h5py/_conv.c:6574:35: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_8; __pyx_v_i++) { ^ /construction/science/py-h5py/h5py-2.10.0/h5py/_conv.c:6794:39: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_8; __pyx_v_i++) { ^ /construction/science/py-h5py/h5py-2.10.0/h5py/_conv.c:6857:37: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_8; __pyx_v_i++) { ^ /construction/science/py-h5py/h5py-2.10.0/h5py/_conv.c: In function '__pyx_pymod_exec__conv': /construction/science/py-h5py/h5py-2.10.0/h5py/_conv.c:8547:3: warning: returning 'void *' from a function with return type 'int' makes integer from pointer without a cast [-Wint-conversion] import_array(); ^~~~~~~~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/construction/science/py-h5py/h5py-2.10.0/h5py/_conv.o -L/opt/local/lib -L/usr/local/lib -L/usr/local/lib -R/opt/local/lib -R/usr/local/lib -lhdf5 -lhdf5_hl -lpython3.7m -o build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/_conv.so building 'h5py.h5t' extension cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include/python3.7m -c /construction/science/py-h5py/h5py-2.10.0/h5py/h5t.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/construction/science/py-h5py/h5py-2.10.0/h5py/h5t.o In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.10.0/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.10.0/h5py/h5t.c:646: /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ In file included from /usr/local/include/python3.7m/Python.h:107, from /construction/science/py-h5py/h5py-2.10.0/h5py/h5t.c:49: /construction/science/py-h5py/h5py-2.10.0/h5py/h5t.c: In function '__pyx_f_4h5py_3h5t__get_available_ftypes': /usr/local/include/python3.7m/tupleobject.h:62:73: warning: assignment to 'PyObject *' {aka 'struct _object *'} from incompatible pointer type 'PyTypeObject *' {aka 'struct _typeobject *'} [-Wincompatible-pointer-types] #define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v) ^ /construction/science/py-h5py/h5py-2.10.0/h5py/h5t.c:3826:5: note: in expansion of macro 'PyTuple_SET_ITEM' PyTuple_SET_ITEM(__pyx_t_4, 0, __pyx_v_fdtype->typeobj); ^~~~~~~~~~~~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/construction/science/py-h5py/h5py-2.10.0/h5py/h5t.o -L/opt/local/lib -L/usr/local/lib -L/usr/local/lib -R/opt/local/lib -R/usr/local/lib -lhdf5 -lhdf5_hl -lpython3.7m -o build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/h5t.so building 'h5py.h5s' extension cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include/python3.7m -c /construction/science/py-h5py/h5py-2.10.0/h5py/h5s.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/construction/science/py-h5py/h5py-2.10.0/h5py/h5s.o In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.10.0/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.10.0/h5py/h5s.c:646: /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/construction/science/py-h5py/h5py-2.10.0/h5py/h5s.o -L/opt/local/lib -L/usr/local/lib -L/usr/local/lib -R/opt/local/lib -R/usr/local/lib -lhdf5 -lhdf5_hl -lpython3.7m -o build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/h5s.so building 'h5py.h5p' extension cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include/python3.7m -c /construction/science/py-h5py/h5py-2.10.0/h5py/h5p.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/construction/science/py-h5py/h5py-2.10.0/h5py/h5p.o In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.10.0/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.10.0/h5py/h5p.c:646: /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ /construction/science/py-h5py/h5py-2.10.0/h5py/h5p.c: In function '__pyx_pf_4h5py_3h5p_8PropDCID_22set_filter': /construction/science/py-h5py/h5py-2.10.0/h5py/h5p.c:8119:37: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_7; __pyx_v_i++) { ^ /construction/science/py-h5py/h5py-2.10.0/h5py/h5p.c: In function '__pyx_pf_4h5py_3h5p_8PropDCID_28get_filter': /construction/science/py-h5py/h5py-2.10.0/h5py/h5p.c:8479:33: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_4; __pyx_v_i++) { ^ /construction/science/py-h5py/h5py-2.10.0/h5py/h5p.c: In function '__pyx_pf_4h5py_3h5p_8PropDCID_32get_filter_by_id': /construction/science/py-h5py/h5py-2.10.0/h5py/h5p.c:8899:33: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_8; __pyx_v_i++) { ^ /construction/science/py-h5py/h5py-2.10.0/h5py/h5p.c: In function '__pyx_pymod_exec_h5p': /construction/science/py-h5py/h5py-2.10.0/h5py/h5p.c:24727:3: warning: returning 'void *' from a function with return type 'int' makes integer from pointer without a cast [-Wint-conversion] import_array(); ^~~~~~~~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/construction/science/py-h5py/h5py-2.10.0/h5py/h5p.o -L/opt/local/lib -L/usr/local/lib -L/usr/local/lib -R/opt/local/lib -R/usr/local/lib -lhdf5 -lhdf5_hl -lpython3.7m -o build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/h5p.so building 'h5py.h5d' extension cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include/python3.7m -c /construction/science/py-h5py/h5py-2.10.0/h5py/h5d.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/construction/science/py-h5py/h5py-2.10.0/h5py/h5d.o In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.10.0/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.10.0/h5py/h5d.c:646: /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ /construction/science/py-h5py/h5py-2.10.0/h5py/h5d.c: In function '__pyx_pymod_exec_h5d': /construction/science/py-h5py/h5py-2.10.0/h5py/h5d.c:8779:3: warning: returning 'void *' from a function with return type 'int' makes integer from pointer without a cast [-Wint-conversion] import_array(); ^~~~~~~~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/construction/science/py-h5py/h5py-2.10.0/h5py/h5d.o -L/opt/local/lib -L/usr/local/lib -L/usr/local/lib -R/opt/local/lib -R/usr/local/lib -lhdf5 -lhdf5_hl -lpython3.7m -o build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/h5d.so building 'h5py.h5a' extension cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include/python3.7m -c /construction/science/py-h5py/h5py-2.10.0/h5py/h5a.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/construction/science/py-h5py/h5py-2.10.0/h5py/h5a.o In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.10.0/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.10.0/h5py/h5a.c:646: /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ /construction/science/py-h5py/h5py-2.10.0/h5py/h5a.c: In function '__pyx_pymod_exec_h5a': /construction/science/py-h5py/h5py-2.10.0/h5py/h5a.c:9276:3: warning: returning 'void *' from a function with return type 'int' makes integer from pointer without a cast [-Wint-conversion] import_array(); ^~~~~~~~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/construction/science/py-h5py/h5py-2.10.0/h5py/h5a.o -L/opt/local/lib -L/usr/local/lib -L/usr/local/lib -R/opt/local/lib -R/usr/local/lib -lhdf5 -lhdf5_hl -lpython3.7m -o build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/h5a.so building 'h5py.h5f' extension cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include/python3.7m -c /construction/science/py-h5py/h5py-2.10.0/h5py/h5f.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/construction/science/py-h5py/h5py-2.10.0/h5py/h5f.o In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.10.0/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.10.0/h5py/h5f.c:646: /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/construction/science/py-h5py/h5py-2.10.0/h5py/h5f.o -L/opt/local/lib -L/usr/local/lib -L/usr/local/lib -R/opt/local/lib -R/usr/local/lib -lhdf5 -lhdf5_hl -lpython3.7m -o build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/h5f.so building 'h5py.h5g' extension cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include/python3.7m -c /construction/science/py-h5py/h5py-2.10.0/h5py/h5g.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/construction/science/py-h5py/h5py-2.10.0/h5py/h5g.o In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.10.0/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.10.0/h5py/h5g.c:646: /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/construction/science/py-h5py/h5py-2.10.0/h5py/h5g.o -L/opt/local/lib -L/usr/local/lib -L/usr/local/lib -R/opt/local/lib -R/usr/local/lib -lhdf5 -lhdf5_hl -lpython3.7m -o build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/h5g.so building 'h5py.h5l' extension cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include/python3.7m -c /construction/science/py-h5py/h5py-2.10.0/h5py/h5l.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/construction/science/py-h5py/h5py-2.10.0/h5py/h5l.o In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.10.0/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.10.0/h5py/h5l.c:646: /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ /construction/science/py-h5py/h5py-2.10.0/h5py/h5l.c: In function '__pyx_pf_4h5py_3h5l_9LinkProxy_12get_val': /construction/science/py-h5py/h5py-2.10.0/h5py/h5l.c:3976:95: warning: passing argument 4 of '__pyx_f_4h5py_4defs_H5Lunpack_elink_val' from incompatible pointer type [-Wincompatible-pointer-types] __pyx_f_4h5py_4defs_H5Lunpack_elink_val(__pyx_v_buf, __pyx_v_buf_size, (&__pyx_v_wtf), (&__pyx_v_ext_file_name), (&__pyx_v_ext_obj_name)); if (unlikely(PyErr_Occurred())) __PYX_ERR(1, 187, __pyx_L5_error) ~^~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-h5py/h5py-2.10.0/h5py/h5l.c:3976:95: note: expected 'const char **' but argument is of type 'char **' /construction/science/py-h5py/h5py-2.10.0/h5py/h5l.c:3976:121: warning: passing argument 5 of '__pyx_f_4h5py_4defs_H5Lunpack_elink_val' from incompatible pointer type [-Wincompatible-pointer-types] __pyx_f_4h5py_4defs_H5Lunpack_elink_val(__pyx_v_buf, __pyx_v_buf_size, (&__pyx_v_wtf), (&__pyx_v_ext_file_name), (&__pyx_v_ext_obj_name)); if (unlikely(PyErr_Occurred())) __PYX_ERR(1, 187, __pyx_L5_error) ~^~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-h5py/h5py-2.10.0/h5py/h5l.c:3976:121: note: expected 'const char **' but argument is of type 'char **' cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/construction/science/py-h5py/h5py-2.10.0/h5py/h5l.o -L/opt/local/lib -L/usr/local/lib -L/usr/local/lib -R/opt/local/lib -R/usr/local/lib -lhdf5 -lhdf5_hl -lpython3.7m -o build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/h5l.so building 'h5py.h5o' extension cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include/python3.7m -c /construction/science/py-h5py/h5py-2.10.0/h5py/h5o.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/construction/science/py-h5py/h5py-2.10.0/h5py/h5o.o In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.10.0/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.10.0/h5py/h5o.c:646: /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/construction/science/py-h5py/h5py-2.10.0/h5py/h5o.o -L/opt/local/lib -L/usr/local/lib -L/usr/local/lib -R/opt/local/lib -R/usr/local/lib -lhdf5 -lhdf5_hl -lpython3.7m -o build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/h5o.so building 'h5py.h5ds' extension cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include/python3.7m -c /construction/science/py-h5py/h5py-2.10.0/h5py/h5ds.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/construction/science/py-h5py/h5py-2.10.0/h5py/h5ds.o In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.10.0/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.10.0/h5py/h5ds.c:646: /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/construction/science/py-h5py/h5py-2.10.0/h5py/h5ds.o -L/opt/local/lib -L/usr/local/lib -L/usr/local/lib -R/opt/local/lib -R/usr/local/lib -lhdf5 -lhdf5_hl -lpython3.7m -o build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/h5ds.so building 'h5py.h5ac' extension cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include/python3.7m -c /construction/science/py-h5py/h5py-2.10.0/h5py/h5ac.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/construction/science/py-h5py/h5py-2.10.0/h5py/h5ac.o In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.10.0/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.10.0/h5py/h5ac.c:645: /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/construction/science/py-h5py/h5py-2.10.0/h5py/h5ac.o -L/opt/local/lib -L/usr/local/lib -L/usr/local/lib -R/opt/local/lib -R/usr/local/lib -lhdf5 -lhdf5_hl -lpython3.7m -o build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/h5ac.so building 'h5py.h5pl' extension cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DH5_USE_16_API -I./h5py -I/construction/science/py-h5py/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include/python3.7m -c /construction/science/py-h5py/h5py-2.10.0/h5py/h5pl.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/construction/science/py-h5py/h5py-2.10.0/h5py/h5pl.o In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /construction/science/py-h5py/h5py-2.10.0/h5py/api_compat.h:26, from /construction/science/py-h5py/h5py-2.10.0/h5py/h5pl.c:646: /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/construction/science/py-h5py/h5py-2.10.0/h5py/h5pl.o -L/opt/local/lib -L/usr/local/lib -L/usr/local/lib -R/opt/local/lib -R/usr/local/lib -lhdf5 -lhdf5_hl -lpython3.7m -o build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/h5pl.so warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- ===> py37-h5py-2.10.0 depends on package: py37-numpy>=1.15,1<1.19,1 - found ===> py37-h5py-2.10.0 depends on package: py37-six>=0 - found ===> py37-h5py-2.10.0 depends on package: py37-setuptools>0 - found ===> py37-h5py-2.10.0 depends on file: /usr/local/bin/python3.7 - found -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for py37-h5py-2.10.0 ===> Generating temporary packing list running install running build running build_py running build_ext Loading library to get version: /usr/local/lib/libhdf5.so Autodetected HDF5 1.10.6 ******************************************************************************** Summary of the h5py configuration Path to HDF5: None HDF5 Version: '1.10.6' MPI Enabled: False Rebuild Required: False ******************************************************************************** Executing cythonize() running install_lib creating /construction/science/py-h5py/stage/usr/local/lib/python3.7 creating /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages creating /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/h5t.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/h5s.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/h5pl.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/h5ac.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/h5g.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/h5f.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/h5l.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/__init__.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/highlevel.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/ipy_completer.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/version.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/h5py_warnings.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py creating /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/_hl copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/_hl/vds.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/_hl copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/_hl/filters.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/_hl copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/_hl/compat.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/_hl copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/_hl/datatype.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/_hl copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/_hl/group.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/_hl copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/_hl/base.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/_hl copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/_hl/selections2.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/_hl copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/_hl/__init__.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/_hl copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/_hl/attrs.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/_hl copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/_hl/files.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/_hl copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/_hl/dims.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/_hl copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/_hl/dataset.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/_hl copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/_hl/selections.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/_hl creating /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests/test_dtype.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests/test_h5d_direct_chunk.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests/test_attrs.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests/test_h5p.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests/test_deprecation.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests/test_h5t.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests/test_file2.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests/test_threads.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests/test_group.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests/test_objects.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests/test_dataset.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests/__init__.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests/test_h5f.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests/test_dimension_scales.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests/test_datatype.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests/test_selections.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests/test_base.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests/test_dataset_swmr.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests/test_file_image.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests/test_file.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests/test_dataset_getitem.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests/test_h5pl.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests/test_attribute_create.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests/test_dims_dimensionproxy.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests/test_attrs_data.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests/test_filters.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests/test_h5.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests/test_slicing.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests/common.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests/test_completions.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests creating /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests/test_vds copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests/test_vds/test_highlevel_vds.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests/test_vds copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests/test_vds/test_lowlevel_vds.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests/test_vds copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests/test_vds/test_virtual_source.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests/test_vds copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/tests/test_vds/__init__.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests/test_vds copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/_errors.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/defs.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/h5p.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/h5d.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/h5fd.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/h5z.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/h5.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/utils.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/_objects.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/_proxy.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/_conv.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/h5a.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/h5r.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/h5i.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/h5ds.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/h5py/h5o.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/highlevel.py to highlevel.cpython-37.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/ipy_completer.py to ipy_completer.cpython-37.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/version.py to version.cpython-37.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/h5py_warnings.py to h5py_warnings.cpython-37.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/_hl/vds.py to vds.cpython-37.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/_hl/filters.py to filters.cpython-37.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/_hl/compat.py to compat.cpython-37.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/_hl/datatype.py to datatype.cpython-37.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/_hl/group.py to group.cpython-37.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/_hl/base.py to base.cpython-37.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/_hl/selections2.py to selections2.cpython-37.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/_hl/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/_hl/attrs.py to attrs.cpython-37.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/_hl/files.py to files.cpython-37.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/_hl/dims.py to dims.cpython-37.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/_hl/dataset.py to dataset.cpython-37.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/_hl/selections.py to selections.cpython-37.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests/test_dtype.py to test_dtype.cpython-37.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests/test_h5d_direct_chunk.py to test_h5d_direct_chunk.cpython-37.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests/test_attrs.py to test_attrs.cpython-37.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests/test_h5p.py to test_h5p.cpython-37.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests/test_deprecation.py to test_deprecation.cpython-37.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests/test_h5t.py to test_h5t.cpython-37.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests/test_file2.py to test_file2.cpython-37.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests/test_threads.py to test_threads.cpython-37.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests/test_group.py to test_group.cpython-37.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests/test_objects.py to test_objects.cpython-37.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests/test_dataset.py to test_dataset.cpython-37.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests/test_h5f.py to test_h5f.cpython-37.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests/test_dimension_scales.py to test_dimension_scales.cpython-37.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests/test_datatype.py to test_datatype.cpython-37.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests/test_selections.py to test_selections.cpython-37.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests/test_base.py to test_base.cpython-37.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests/test_dataset_swmr.py to test_dataset_swmr.cpython-37.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests/test_file_image.py to test_file_image.cpython-37.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests/test_file.py to test_file.cpython-37.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests/test_dataset_getitem.py to test_dataset_getitem.cpython-37.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests/test_h5pl.py to test_h5pl.cpython-37.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests/test_attribute_create.py to test_attribute_create.cpython-37.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests/test_dims_dimensionproxy.py to test_dims_dimensionproxy.cpython-37.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests/test_attrs_data.py to test_attrs_data.cpython-37.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests/test_filters.py to test_filters.cpython-37.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests/test_h5.py to test_h5.cpython-37.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests/test_slicing.py to test_slicing.cpython-37.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests/common.py to common.cpython-37.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests/test_completions.py to test_completions.cpython-37.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests/test_vds/test_highlevel_vds.py to test_highlevel_vds.cpython-37.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests/test_vds/test_lowlevel_vds.py to test_lowlevel_vds.cpython-37.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests/test_vds/test_virtual_source.py to test_virtual_source.cpython-37.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/tests/test_vds/__init__.py to __init__.cpython-37.pyc writing byte-compilation script '/tmp/tmpnvz9bglv.py' /usr/local/bin/python3.7 /tmp/tmpnvz9bglv.py removing /tmp/tmpnvz9bglv.py running install_egg_info running egg_info writing h5py.egg-info/PKG-INFO writing dependency_links to h5py.egg-info/dependency_links.txt writing requirements to h5py.egg-info/requires.txt writing top-level names to h5py.egg-info/top_level.txt reading manifest file 'h5py.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' no previously-included directories found matching 'docs/_build' no previously-included directories found matching 'docs_api/_build' warning: no previously-included files matching '.DS_Store' found under directory '*' warning: no previously-included files found matching 'ci' warning: no previously-included files found matching 'other' warning: no previously-included files found matching '.github' warning: no previously-included files matching '*' found under directory 'ci' warning: no previously-included files matching '*' found under directory 'other' warning: no previously-included files matching '*' found under directory '.github' warning: no previously-included files found matching 'pavement.py' warning: no previously-included files found matching '*.yml' warning: no previously-included files found matching '*.yaml' warning: no previously-included files matching '__pycache__' found under directory '*' warning: no previously-included files matching '*.py[co]' found under directory '*' warning: no previously-included files found matching '.coveragerc' warning: no previously-included files found matching '.mailmap' warning: no previously-included files found matching 'rever.xsh' no previously-included directories found matching 'news' writing manifest file 'h5py.egg-info/SOURCES.txt' Copying h5py.egg-info to /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py-2.10.0-py3.7.egg-info running install_scripts writing list of installed files to '/construction/science/py-h5py/.PLIST.pymodtmp' /usr/bin/strip /construction/science/py-h5py/stage/usr/local/lib/python3.7/site-packages/h5py/*.so install -m 0644 /construction/science/py-h5py/h5py-2.10.0/README.rst /construction/science/py-h5py/stage/usr/local/share/doc/py37-h5py cd /construction/science/py-h5py/h5py-2.10.0/docs/ && /bin/sh -c '(/usr/bin/find -Ed $1 $3 | /usr/bin/cpio -dumpl $2 >/dev/null 2>&1) && /usr/bin/find -Ed $1 $3 \( -type d -exec /bin/sh -c '\''cd '\''$2'\'' && chmod 755 "$@"'\'' . {} + -o -type f -exec /bin/sh -c '\''cd '\''$2'\'' && chmod 0644 "$@"'\'' . {} + \)' COPYTREE_SHARE . /construction/science/py-h5py/stage/usr/local/share/doc/py37-h5py install -m 0644 /construction/science/py-h5py/h5py-2.10.0/examples/*.py /construction/science/py-h5py/stage/usr/local/share/examples/py37-h5py ===> Creating unique files: Move MAN files needing SUFFIX ===> Creating unique files: Move files needing SUFFIX ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Error: /usr/local/lib/python3.7/site-packages/h5py/_conv.so is linked to /usr/local/lib/libsz.so.2 from science/szip but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libsz.so:science/szip Error: /usr/local/lib/python3.7/site-packages/h5py/_conv.so is linked to /usr/local/lib/libintl.so.8 from devel/gettext-runtime but it is not declared as a dependency Warning: you need USES+=gettext-runtime Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for py37-h5py-2.10.0 file sizes/checksums [230]: ... done packing files [230]: ... done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Friday, 14 FEB 2020 at 07:56:06 UTC Duration: 00:06:04