=> Building science/py-MDAnalysisTests@py27 Started : Saturday, 15 FEB 2020 at 16:53:27 UTC Platform: 5.7-DEVELOPMENT DragonFly v5.7.0.1432.g9cd86-DEVELOPMENT #23: Thu Feb 13 14:43:04 PST 2020 root@sting.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.7-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.7-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/construction/science/py-MDAnalysisTests XDG_CONFIG_HOME=/construction/science/py-MDAnalysisTests HOME=/construction/science/py-MDAnalysisTests TMPDIR="/tmp" PATH=/construction/science/py-MDAnalysisTests/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- XDG_DATA_HOME=/construction/science/py-MDAnalysisTests XDG_CONFIG_HOME=/construction/science/py-MDAnalysisTests HOME=/construction/science/py-MDAnalysisTests TMPDIR="/tmp" PATH=/construction/science/py-MDAnalysisTests/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/science/py-MDAnalysisTests/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=dragonfly5 PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_SUFFIX=27 PYTHON_VER=2.7 PYTHON_VERSION=python2.7 PYTHON2="" PYTHON3="@comment " OSREL=5.7 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/MDAnalysisTests" EXAMPLESDIR="share/examples/MDAnalysisTests" DATADIR="share/MDAnalysisTests" WWWDIR="www/MDAnalysisTests" ETCDIR="etc/MDAnalysisTests" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/MDAnalysisTests DOCSDIR=/usr/local/share/doc/MDAnalysisTests EXAMPLESDIR=/usr/local/share/examples/MDAnalysisTests WWWDIR=/usr/local/www/MDAnalysisTests ETCDIR=/usr/local/etc/MDAnalysisTests -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=LiveSystem USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=15 DPORTS_BUILDER= yes DISABLE_LICENSES= yes DEFAULT_VERSIONS= ssl=openssl FORCE_PACKAGE= yes DEVELOPER= yes HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.30.1 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=32 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500709 OSVERSION=9999999 OSREL=5.7 _OSRELEASE=5.7-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> py27-MDAnalysisTests-0.19.2_2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.12.0_1.txz Installing pkg-1.12.0_1... Extracting pkg-1.12.0_1: .......... done ===> py27-MDAnalysisTests-0.19.2_2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py27-MDAnalysisTests-0.19.2_2 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- ===> Fetching all distfiles required by py27-MDAnalysisTests-0.19.2_2 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> Fetching all distfiles required by py27-MDAnalysisTests-0.19.2_2 for building => SHA256 Checksum OK for MDAnalysisTests-0.19.2.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> Fetching all distfiles required by py27-MDAnalysisTests-0.19.2_2 for building ===> Extracting for py27-MDAnalysisTests-0.19.2_2 => SHA256 Checksum OK for MDAnalysisTests-0.19.2.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for py27-MDAnalysisTests-0.19.2_2 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> py27-MDAnalysisTests-0.19.2_2 depends on package: py27-setuptools>0 - not found ===> Installing existing package /packages/All/py27-setuptools-44.0.0.txz Installing py27-setuptools-44.0.0... `-- Installing python27-2.7.17_1... | `-- Installing expat-2.2.8... | `-- Extracting expat-2.2.8: .......... done | `-- Installing gettext-runtime-0.20.1... | | `-- Installing indexinfo-0.3.1... | | `-- Extracting indexinfo-0.3.1: . done | `-- Extracting gettext-runtime-0.20.1: .......... done | `-- Installing libffi-3.2.1_3... | `-- Extracting libffi-3.2.1_3: .......... done | `-- Installing ncurses-6.1.20190525... | `-- Extracting ncurses-6.1.20190525: .......... done | `-- Installing openssl-1.1.1d,1... | `-- Extracting openssl-1.1.1d,1: .......... done | `-- Installing readline-8.0.1... | `-- Extracting readline-8.0.1: .......... done `-- Extracting python27-2.7.17_1: .......... done Extracting py27-setuptools-44.0.0: .......... done ===== Message from python27-2.7.17_1: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter ===== Message from py27-setuptools-44.0.0: -- Only /usr/local/bin/easy_install-2.7 script has been installed since Python 2.7 is not the default Python version. ===> py27-MDAnalysisTests-0.19.2_2 depends on package: py27-setuptools>0 - found ===> Returning to build of py27-MDAnalysisTests-0.19.2_2 ===> py27-MDAnalysisTests-0.19.2_2 depends on file: /usr/local/bin/python2.7 - found -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for py27-MDAnalysisTests-0.19.2_2 running config -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for py27-MDAnalysisTests-0.19.2_2 running build running build_py creating build creating build/lib creating build/lib/MDAnalysisTests copying MDAnalysisTests/test_api.py -> build/lib/MDAnalysisTests copying MDAnalysisTests/datafiles.py -> build/lib/MDAnalysisTests copying MDAnalysisTests/tempdir.py -> build/lib/MDAnalysisTests copying MDAnalysisTests/dummy.py -> build/lib/MDAnalysisTests copying MDAnalysisTests/__init__.py -> build/lib/MDAnalysisTests copying MDAnalysisTests/util.py -> build/lib/MDAnalysisTests creating build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_topologyobjects.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_copying.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_index_dtype.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_fragments.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_atomselections.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_segment.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_updating_atomgroup.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/__init__.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_topologyattrs.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_universe.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_requires.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_topology.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_atom.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_group_traj_access.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_residue.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_segmentgroup.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_residuegroup.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_flag_deprecations.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_groups.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_atomgroup.py -> build/lib/MDAnalysisTests/core creating build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/base.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/reference.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_mmtf.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_pdbqt.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_crd.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_copying.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_trz.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_xdr.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_reader_api.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/__init__.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_pqr.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_txyz.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_amber_inpcrd.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_gsd.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_dlpoly.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_lammps.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_gro.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_pdb.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_mol2.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_trj.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_chainreader.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_memory.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_xyz.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_null.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_netcdf.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_dms.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_dcd.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_timestep_api.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_writer_registration.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_gms.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_windows.py -> build/lib/MDAnalysisTests/coordinates creating build/lib/MDAnalysisTests/formats copying MDAnalysisTests/formats/__init__.py -> build/lib/MDAnalysisTests/formats copying MDAnalysisTests/formats/test_libmdaxdr.py -> build/lib/MDAnalysisTests/formats copying MDAnalysisTests/formats/test_libdcd.py -> build/lib/MDAnalysisTests/formats creating build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_guessers.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_dlpoly.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_mol2.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_gms.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_txyz.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_pqr.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_gro.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_pdbqt.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_crd.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_hoomdxml.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/base.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_top.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_xpdb.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_tprparser.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_xyz.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_psf.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_topology_base.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_pdb.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_topology_str_types.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_minimal.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_mmtf.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_lammpsdata.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_dms.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_gsd.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/__init__.py -> build/lib/MDAnalysisTests/topology creating build/lib/MDAnalysisTests/auxiliary copying MDAnalysisTests/auxiliary/__init__.py -> build/lib/MDAnalysisTests/auxiliary copying MDAnalysisTests/auxiliary/test_xvg.py -> build/lib/MDAnalysisTests/auxiliary copying MDAnalysisTests/auxiliary/base.py -> build/lib/MDAnalysisTests/auxiliary creating build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_encore.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_rdf_s.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_rms.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_contacts.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_density.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_dihedrals.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_helanal.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_align.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_wbridge.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_rdf.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_distances.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_persistencelength.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_lineardensity.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_waterdynamics.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_gnm.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_psa.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_nuclinfo.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/__init__.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_leaflet.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_data.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_base.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_diffusionmap.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_pca.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_hbonds.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_hole.py -> build/lib/MDAnalysisTests/analysis creating build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_deprecated.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_streamio.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_failure.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_modelling.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_selections.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_log.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_transformations.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_qcprot.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_altloc.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_datafiles.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_units.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_nuclinfo.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_meta.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_duecredit.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_authors.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/__init__.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_persistence.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_imports.py -> build/lib/MDAnalysisTests/utils creating build/lib/MDAnalysisTests/lib copying MDAnalysisTests/lib/test_neighborsearch.py -> build/lib/MDAnalysisTests/lib copying MDAnalysisTests/lib/test_augment.py -> build/lib/MDAnalysisTests/lib copying MDAnalysisTests/lib/test_util.py -> build/lib/MDAnalysisTests/lib copying MDAnalysisTests/lib/__init__.py -> build/lib/MDAnalysisTests/lib copying MDAnalysisTests/lib/test_nsgrid.py -> build/lib/MDAnalysisTests/lib copying MDAnalysisTests/lib/test_pkdtree.py -> build/lib/MDAnalysisTests/lib copying MDAnalysisTests/lib/test_cutil.py -> build/lib/MDAnalysisTests/lib copying MDAnalysisTests/lib/test_distances.py -> build/lib/MDAnalysisTests/lib creating build/lib/MDAnalysisTests/visualization copying MDAnalysisTests/visualization/__init__.py -> build/lib/MDAnalysisTests/visualization copying MDAnalysisTests/visualization/test_streamlines.py -> build/lib/MDAnalysisTests/visualization creating build/lib/MDAnalysisTests/import copying MDAnalysisTests/import/__init__.py -> build/lib/MDAnalysisTests/import copying MDAnalysisTests/import/test_import.py -> build/lib/MDAnalysisTests/import copying MDAnalysisTests/import/fork_called.py -> build/lib/MDAnalysisTests/import creating build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/watdyn.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_notop.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/nosegid.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_notop_BAD.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/SiN_tric_namd.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/trz_psf.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/2r9r-1b.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/namd_cgenff.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/tip125_tric_C36.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_closed_NAMD.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_dims.dcd -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/empty.dcd -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/SiN_tric_namd.dcd -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/tip125_tric_C36.dcd -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_gbis_tmd-fast1_NAMD.dcd -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/watdyn.dcd -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_dims2.dcd -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/1grm_single.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/pdbqt_querypdb.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cobrotoxin_dry_neutral_0.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/nucl_res.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/namd_cgenff.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/SINGLECONECT.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_closed.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/model_then_cryst.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/nmr_neopetrosiamide.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/conect_parsing.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cryst_then_model.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/A6PA6_alpha.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_open.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/5digitResid.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/incomplete.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/4E43.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/CONECT2TER.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/xl_serial.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/RANDOM_WALK_TOPO.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cobrotoxin.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/align.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/1hvr.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/sameresid_diffresname.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/unordered_res.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/1k5i.pdb -> build/lib/MDAnalysisTests/data creating build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.5.2.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.0.7.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/drew_gmx_4.5.5.double.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.0.2.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_2016.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_5.1.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_5.0.2.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.5.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_5.0.5.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.0.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.5.1.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_2018.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/ab42_gmx_4.6.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.0.6.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.5.3.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/ab42_gmx_4.6.1.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.0.3.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.5.4.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.0.5.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_5.0.4.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.0.4.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.5.5.tpr -> build/lib/MDAnalysisTests/data/tprs creating build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy.gro -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy.top -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy_2018.mdp -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy.mdp -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/cobrotoxin.tpr -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa.tpr -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/martini_dppc_chol_bilayer.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/sample_velocity_file.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/residwrap_0base.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/empty_atom.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/two_water_gro_widebox.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/sameresid_diffresname.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/grovels.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/make_whole.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/two_water_gro.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/dppc_vesicle_hg.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/two_water_gro_nonames.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/plength.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/missing_atomname.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/residwrap.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/xyz_random_walk.xtc -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa.xtc -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cobrotoxin.xtc -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa.trr -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cobrotoxin.trr -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa_dihedral_list.npy -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa_dihedral.npy -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa_GLY_rama.npy -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/legacy_DCD_adk_coords.npy -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa_LYS_janin.npy -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/legacy_DCD_c36_coords.npy -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa_rama.npy -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/legacy_DCD_NAMD_coords.npy -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa_janin.npy -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa_CA_rmsf.npy -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_open.crd -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/mini.xyz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/five.xyz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/2r9r-1b.xyz -> build/lib/MDAnalysisTests/data creating build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/capped-ala.mdcrd.bz2 -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/tz2.truncoct.parm7.bz2 -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/ache.mdcrd.bz2 -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/anti_md1.mdcrd.bz2 -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/ache.prmtop -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/bala.prmtop -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/capped-ala.prmtop -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/chitosan.prmtop -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/anti.top -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/posfor.top -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/ace_mbondi3.parm7 -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/ace_mbondi3.error3.parm7 -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/ace_mbondi3.error1.parm7 -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/ace_mbondi3.error2.parm7 -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/bala.trj -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/ache.mdcrd -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/posfor.ncdf -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/bala.ncdf -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/tz2.truncoct.nc -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/test.inpcrd -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/1A2C.pqr -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_open.pqr -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/pdbqt_inputpdbqt.pdbqt -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/1grm_elNemo_mode7.pdb.bz2 -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cobrotoxin_protein_forces.xvg.bz2 -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/C12x64.xml.bz2 -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cryst_then_model.pdb.bz2 -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/model_then_cryst.pdb.bz2 -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/2r9r-1b.xyz.bz2 -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/bigbox.gro.bz2 -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/19hc.pdb.gz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/1osm.pdb.gz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/model_then_cryst.pdb.gz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cryst_then_model.pdb.gz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/1a28.pdb.gz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/chainIDrepeat.pdb.gz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/fullerene.pdb.gz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/chainIDnewres.pdb.gz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/5KIH.mmtf.gz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/testENT.ent -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/test.fasta -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/helanal_bending_matrix_AdK_DIMS_H8.dat -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_closed.dms -> build/lib/MDAnalysisTests/data creating build/lib/MDAnalysisTests/data/merge creating build/lib/MDAnalysisTests/data/merge/2zmm copying MDAnalysisTests/data/merge/2zmm/ligand.pdb -> build/lib/MDAnalysisTests/data/merge/2zmm copying MDAnalysisTests/data/merge/2zmm/protein.pdb -> build/lib/MDAnalysisTests/data/merge/2zmm copying MDAnalysisTests/data/merge/2zmm/water.pdb -> build/lib/MDAnalysisTests/data/merge/2zmm copying MDAnalysisTests/data/trzfile.trz -> build/lib/MDAnalysisTests/data creating build/lib/MDAnalysisTests/data/mol2 copying MDAnalysisTests/data/mol2/BrokenMolecule.mol2 -> build/lib/MDAnalysisTests/data/mol2 copying MDAnalysisTests/data/mol2/Molecule.mol2 -> build/lib/MDAnalysisTests/data/mol2 copying MDAnalysisTests/data/mol2/zinc_856218.mol2 -> build/lib/MDAnalysisTests/data/mol2 copying MDAnalysisTests/data/mol2/Molecules.mol2 -> build/lib/MDAnalysisTests/data/mol2 creating build/lib/MDAnalysisTests/data/contacts copying MDAnalysisTests/data/contacts/villin_unfolded.gro.bz2 -> build/lib/MDAnalysisTests/data/contacts copying MDAnalysisTests/data/contacts/villin_folded.gro.bz2 -> build/lib/MDAnalysisTests/data/contacts copying MDAnalysisTests/data/contacts/2F4K_qlist5_remap.dat -> build/lib/MDAnalysisTests/data/contacts creating build/lib/MDAnalysisTests/data/capping copying MDAnalysisTests/data/capping/aaqaa.gro -> build/lib/MDAnalysisTests/data/capping copying MDAnalysisTests/data/capping/ace.pdb -> build/lib/MDAnalysisTests/data/capping copying MDAnalysisTests/data/capping/nma.pdb -> build/lib/MDAnalysisTests/data/capping copying MDAnalysisTests/data/capping/maestro_aaqaa_capped.pdb -> build/lib/MDAnalysisTests/data/capping creating build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/datatest.data -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/mini.data -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/hydrogen-class1.data2 -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/hydrogen-class1.data -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/ifabp_apo_100mM.dcd -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/datatest.trz -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/ifabp_apo_100mM.in -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/deletedatoms.data -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/ifabp_apo_100mM.data.bz2 -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data2 -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/wat.lammpstrj.bz2 -> build/lib/MDAnalysisTests/data/lammps creating build/lib/MDAnalysisTests/data/gms copying MDAnalysisTests/data/gms/surf2wat.gms -> build/lib/MDAnalysisTests/data/gms copying MDAnalysisTests/data/gms/symopt.gms -> build/lib/MDAnalysisTests/data/gms copying MDAnalysisTests/data/gms/c1opt.gms.gz -> build/lib/MDAnalysisTests/data/gms creating build/lib/MDAnalysisTests/data/dlpoly copying MDAnalysisTests/data/dlpoly/CONFIG_minimal -> build/lib/MDAnalysisTests/data/dlpoly copying MDAnalysisTests/data/dlpoly/CONFIG -> build/lib/MDAnalysisTests/data/dlpoly copying MDAnalysisTests/data/dlpoly/CONFIG_order -> build/lib/MDAnalysisTests/data/dlpoly copying MDAnalysisTests/data/dlpoly/HISTORY -> build/lib/MDAnalysisTests/data/dlpoly copying MDAnalysisTests/data/dlpoly/HISTORY_order -> build/lib/MDAnalysisTests/data/dlpoly copying MDAnalysisTests/data/dlpoly/HISTORY_minimal -> build/lib/MDAnalysisTests/data/dlpoly creating build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.gro -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/create_data.py -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.xyz.bz2 -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test_topology.pdb -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.trr -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test_incomplete_vel.gro -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/README.md -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.xyz -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.xtc -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/new_hexane.arc -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.gro.bz2 -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.txyz -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.dcd -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.arc -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/test_lowf.xvg -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/test_highf.xvg -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/test.xvg -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/bad_num_col.xvg -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/173D.mmtf -> build/lib/MDAnalysisTests/data creating build/lib/MDAnalysisTests/data/analysis copying MDAnalysisTests/data/analysis/YiiP_lipids.xtc -> build/lib/MDAnalysisTests/data/analysis copying MDAnalysisTests/data/analysis/align_unbound.pdb.gz -> build/lib/MDAnalysisTests/data/analysis copying MDAnalysisTests/data/analysis/align_bound.pdb.gz -> build/lib/MDAnalysisTests/data/analysis copying MDAnalysisTests/data/analysis/YiiP_lipids.gro.gz -> build/lib/MDAnalysisTests/data/analysis copying MDAnalysisTests/data/example.gsd -> build/lib/MDAnalysisTests/data creating build/lib/MDAnalysisTests/data/windows copying MDAnalysisTests/data/windows/WIN_wat.lammpstrj -> build/lib/MDAnalysisTests/data/windows copying MDAnalysisTests/data/windows/WIN_HISTORY -> build/lib/MDAnalysisTests/data/windows copying MDAnalysisTests/data/windows/WIN_ache.mdcrd -> build/lib/MDAnalysisTests/data/windows copying MDAnalysisTests/data/windows/WIN_test.arc -> build/lib/MDAnalysisTests/data/windows copying MDAnalysisTests/data/windows/README.md -> build/lib/MDAnalysisTests/data/windows copying MDAnalysisTests/data/windows/WIN_nmr_neopetrosiamide.pdb -> build/lib/MDAnalysisTests/data/windows -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- ===> py27-MDAnalysisTests-0.19.2_2 depends on package: py27-numpy>=1.15,1<1.19,1 - not found ===> Installing existing package /packages/All/py27-numpy-1.16.5_4,1.txz Installing py27-numpy-1.16.5_4,1... `-- Installing gcc8-8.3.0_3... | `-- Installing binutils-2.33.1_2,1... | `-- Extracting binutils-2.33.1_2,1: .......... done | `-- Installing gmp-6.1.2_1... | `-- Extracting gmp-6.1.2_1: .......... done | `-- Installing mpc-1.1.0_2... | | `-- Installing mpfr-4.0.2... | | `-- Extracting mpfr-4.0.2: .......... done | `-- Extracting mpc-1.1.0_2: ...... done `-- Extracting gcc8-8.3.0_3: .......... done `-- Installing openblas-0.3.7_2,1... `-- Extracting openblas-0.3.7_2,1: .......... done `-- Installing suitesparse-5.4.0_5... | `-- Installing metis-5.1.0_8... | `-- Extracting metis-5.1.0_8: .......... done | `-- Installing tbb-2020.1... | `-- Extracting tbb-2020.1: .......... done `-- Extracting suitesparse-5.4.0_5: .......... done Extracting py27-numpy-1.16.5_4,1: .......... done ===== Message from gcc8-8.3.0_3: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> py27-MDAnalysisTests-0.19.2_2 depends on package: py27-numpy>=1.15,1<1.19,1 - found ===> Returning to build of py27-MDAnalysisTests-0.19.2_2 ===> py27-MDAnalysisTests-0.19.2_2 depends on package: py27-MDAnalysis>0 - not found ===> Installing existing package /packages/All/py27-MDAnalysis-0.19.2_2.txz Installing py27-MDAnalysis-0.19.2_2... `-- Installing py27-GridDataFormats-0.5.0_1... | `-- Installing py27-six-1.14.0... | `-- Extracting py27-six-1.14.0: ....... done `-- Extracting py27-GridDataFormats-0.5.0_1: .......... done `-- Installing py27-biopython-1.73_1... | `-- Installing py27-reportlab-3.5.21... | | `-- Installing adobe-cmaps-20051217_4... | | `-- Installing fontconfig-2.12.6,1... | | | `-- Installing freetype2-2.10.1... | | | `-- Extracting freetype2-2.10.1: .......... done | | `-- Extracting fontconfig-2.12.6,1: .......... done Running fc-cache to build fontconfig cache... /usr/local/share/fonts: skipping, no such directory 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| | `-- Extracting libXScrnSaver-1.2.3_2: .......... done | | | `-- Installing libXft-2.3.3... | | | | `-- Installing libXrender-0.9.10_2... | | | | `-- Extracting libXrender-0.9.10_2: ....... done | | | `-- Extracting libXft-2.3.3: ......... done | | | `-- Extracting tk86-8.6.10_1: .......... done | | `-- Extracting py27-tkinter-2.7.17_6: ..... done | | `-- Installing webp-1.1.0... | | | `-- Installing giflib-5.2.1... | | | `-- Extracting giflib-5.2.1: .......... done | | `-- Extracting webp-1.1.0: .......... done | | `-- Extracting py27-pillow-6.2.2: .......... done | `-- Extracting py27-reportlab-3.5.21: .......... done `-- Extracting py27-biopython-1.73_1: .......... done `-- Installing py27-duecredit-0.7.0_1... | `-- Installing py27-citeproc-py-0.5.0... | | `-- Installing py27-lxml-4.5.0... | | `-- Installing libxslt-1.1.34_1... | | | `-- Installing libgcrypt-1.8.5... | | | `-- Installing libgpg-error-1.37... | | | `-- Extracting libgpg-error-1.37: .......... done | | | `-- 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.......... done | | `-- Installing python37-3.7.6... | | `-- Extracting python37-3.7.6: .......... done | | `-- Extracting glib-2.56.3_7,1: .......... done No schema files found: doing nothing. | `-- Extracting atk-2.28.1: .......... done | `-- Installing cairo-1.16.0,2... | | `-- Installing mesa-libs-18.3.2_3... | | `-- Installing libXdamage-1.1.5... | | | `-- Installing libXfixes-5.0.3_2... | | | `-- Extracting libXfixes-5.0.3_2: ....... done | | `-- Extracting libXdamage-1.1.5: ...... done | | `-- Installing libXrandr-1.5.2... | | `-- Extracting libXrandr-1.5.2: .......... done | | `-- Installing libXxf86vm-1.1.4_3... | | `-- Extracting libXxf86vm-1.1.4_3: .......... done | | `-- Installing libdrm-2.4.100... | | | `-- Installing libpciaccess-0.16... | | | `-- Installing pciids-20200125... | | | `-- Extracting pciids-20200125: ..... done | | | `-- Extracting libpciaccess-0.16: ...... done | | `-- Extracting libdrm-2.4.100: .......... done | | `-- Installing libelf-0.8.13_3... | | `-- 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Using existing group '_tss'. ===> Creating users Using existing user '_tss'. | | | `-- Extracting tpm-emulator-0.7.4_2: ........ done ===> Creating groups. Using existing group '_tss'. ===> Creating users Using existing user '_tss'. | | | `-- Extracting trousers-0.3.14_2: .......... done | | `-- Extracting gnutls-3.6.12: .......... done | | `-- Installing libpaper-1.1.24.4... | | `-- Extracting libpaper-1.1.24.4: .......... done ===> Creating groups. 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Extracting graphite2-1.3.13_1: .......... done | | | `-- Extracting harfbuzz-2.6.4: .......... done | | | `-- Installing xorg-fonts-truetype-7.7_1... | | | `-- Installing dejavu-2.37_1... | | | `-- Extracting dejavu-2.37_1: .......... done | | | `-- Installing font-bh-ttf-1.0.3_4... | | | `-- Extracting font-bh-ttf-1.0.3_4: .......... done | | | `-- Installing font-misc-ethiopic-1.0.3_4... | | | `-- Extracting font-misc-ethiopic-1.0.3_4: ... done | | | `-- Installing font-misc-meltho-1.0.3_4... | | | `-- Extracting font-misc-meltho-1.0.3_4: .......... done | | `-- Extracting pango-1.42.4_3: .......... done | | `-- Extracting gtk-update-icon-cache-2.24.32: . done | `-- Extracting gtk2-2.24.32: .......... done | `-- Installing libglade2-2.6.4_10... | | `-- Installing xmlcatmgr-2.2_2... | | `-- Extracting xmlcatmgr-2.2_2: ......... done + Creating /usr/local/share/sgml/catalog + Registering CATALOG catalog.ports (SGML) + Creating /usr/local/share/sgml/catalog.ports + Creating /usr/local/share/xml/catalog + Registering nextCatalog catalog.ports (XML) + Creating /usr/local/share/xml/catalog.ports | `-- Extracting libglade2-2.6.4_10: .......... done | `-- Installing py27-backports.functools_lru_cache-1.5... | | `-- Installing py27-backports-1... | | `-- Extracting py27-backports-1: ... done | `-- Extracting py27-backports.functools_lru_cache-1.5: ......... done | `-- Installing py27-cycler-0.10.0... | `-- Extracting py27-cycler-0.10.0: ........ done | `-- Installing py27-dateutil-2.8.0... | `-- Extracting py27-dateutil-2.8.0: .......... done | `-- Installing py27-gobject-2.28.6_8... | | `-- Installing py27-cairo-1.18.1_1... | | `-- Extracting py27-cairo-1.18.1_1: .......... done | `-- Extracting py27-gobject-2.28.6_8: .......... done | `-- Installing py27-gtk2-2.24.0_5... | `-- Extracting py27-gtk2-2.24.0_5: .......... done | `-- Installing py27-kiwisolver-1.1.0... | `-- Extracting py27-kiwisolver-1.1.0: ...... done | `-- Installing py27-pyparsing-2.4.6... | `-- Extracting py27-pyparsing-2.4.6: ....... done | `-- Installing py27-pytz-2019.3,1... | `-- Extracting py27-pytz-2019.3,1: .......... done | `-- Installing py27-tornado-5.1.1... | | `-- Installing py27-backports_abc-0.5... | | `-- Extracting py27-backports_abc-0.5: ....... done | | `-- Installing py27-futures-3.2.0... | | `-- Extracting py27-futures-3.2.0: .......... done | | `-- Installing py27-singledispatch-3.4.0.3_1... | | `-- Extracting py27-singledispatch-3.4.0.3_1: .......... done | `-- Extracting py27-tornado-5.1.1: .......... done `-- Extracting py27-matplotlib-2.2.4_1: .......... done `-- Installing py27-mmtf-python-1.1.2... | `-- Installing py27-msgpack-0.6.2... | `-- Extracting py27-msgpack-0.6.2: .......... done `-- Extracting py27-mmtf-python-1.1.2: .......... done `-- Installing py27-mock-3.0.5... | `-- Installing py27-funcsigs-1.0.2... | `-- Extracting py27-funcsigs-1.0.2: .......... done `-- Extracting py27-mock-3.0.5: .......... done `-- Installing py27-networkx-2.1,1... | `-- Installing py27-decorator-4.3.0... | `-- Extracting py27-decorator-4.3.0: ......... done | `-- Installing py27-pygraphviz-1.5... | | `-- Installing graphviz-2.42.3... | | `-- Installing libXaw-1.0.13_3,2... | | | `-- Installing libXmu-1.1.3,1... | | | `-- Installing libXt-1.2.0,1... | | | `-- Extracting libXt-1.2.0,1: .......... done | | | `-- Extracting libXmu-1.1.3,1: .......... done | | | `-- Installing libXpm-3.5.12_2... | | | `-- Extracting libXpm-3.5.12_2: .......... done | | `-- Extracting libXaw-1.0.13_3,2: .......... done | | `-- Installing libgd-2.2.5_2,1... | | `-- Extracting libgd-2.2.5_2,1: .......... done | | `-- Installing libltdl-2.4.6... | | `-- Extracting libltdl-2.4.6: ......... done | | `-- Extracting graphviz-2.42.3: .......... done | `-- Extracting py27-pygraphviz-1.5: .......... done | `-- Installing py27-scikit-sparse-0.4.4_3... | | `-- Installing py27-scipy-1.2.2_1... | | `-- Extracting py27-scipy-1.2.2_1: .......... done | `-- Extracting py27-scikit-sparse-0.4.4_3: .......... done | `-- Installing py27-yaml-5.2... | `-- Extracting py27-yaml-5.2: .......... done `-- Extracting py27-networkx-2.1,1: .......... done Extracting py27-MDAnalysis-0.19.2_2: .......... done ===== Message from freetype2-2.10.1: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/site/index.html, if documentation was installed). ===== Message from py27-urllib3-1.25.7,1: -- Since version 1.25 HTTPS connections are now verified by default which is done via "cert_reqs = 'CERT_REQUIRED'". While certificate verification can be disabled via "cert_reqs = 'CERT_NONE'", it's highly recommended to leave it on. Various consumers of net/py-urllib3 already have implemented routines that either explicitly enable or disable HTTPS certificate verification (e.g. via configuration settings, CLI arguments, etc.). Yet it may happen that there are still some consumers which don't explicitly enable/disable certificate verification for HTTPS connections which could then lead to errors (as is often the case with self-signed certificates). In case of an error one should try first to temporarily disable certificate verification of the problematic urllib3 consumer to see if that approach will remedy the issue. ===== Message from python37-3.7.6: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py37-gdbm databases/py-gdbm@py37 py37-sqlite3 databases/py-sqlite3@py37 py37-tkinter x11-toolkits/py-tkinter@py37 ===== Message from ca_root_nss-3.50: -- FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem ===== Message from trousers-0.3.14_2: -- To run tcsd automatically, add the following line to /etc/rc.conf: tcsd_enable="YES" You might want to edit /usr/local/etc/tcsd.conf to reflect your setup. If you want to use tcsd with software TPM emulator, use the following configuration in /etc/rc.conf: tcsd_enable="YES" tcsd_mode="emulator" tpmd_enable="YES" To use TPM, add your_account to '_tss' group like following: # pw groupmod _tss -m your_account ===== Message from dejavu-2.37_1: -- Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. ===== Message from xmlcatmgr-2.2_2: -- The following catalogs are installed: 1) /usr/local/share/sgml/catalog The top level catalog for SGML stuff. It is not changed by any ports/packages except textproc/xmlcatmgr. 2) /usr/local/share/sgml/catalog.ports This catalog is for handling SGML stuff installed under /usr/local/share/sgml. It is changed by ports/packages. 3) /usr/local/share/xml/catalog The top level catalog for XML stuff. It is not changed by any ports/packages except textproc/xmlcatmgr. 4) /usr/local/share/xml/catalog.ports This catalog is for handling XML stuff installed under /usr/local/share/xml. It is changed by ports/packages. ===> py27-MDAnalysisTests-0.19.2_2 depends on package: py27-MDAnalysis>0 - found ===> Returning to build of py27-MDAnalysisTests-0.19.2_2 ===> py27-MDAnalysisTests-0.19.2_2 depends on package: py27-pytest>=3.1.2 - not found ===> Installing existing package /packages/All/py27-pytest-4.5.0.txz Installing py27-pytest-4.5.0... `-- Installing py27-atomicwrites-1.3.0... `-- Extracting py27-atomicwrites-1.3.0: ....... done `-- Installing py27-attrs-19.3.0... `-- Extracting py27-attrs-19.3.0: .......... done `-- Installing py27-more-itertools5-5.0.0... `-- Extracting py27-more-itertools5-5.0.0: .......... done `-- Installing py27-pathlib2-2.3.5... | `-- Installing py27-scandir-1.10.0_1... | `-- Extracting py27-scandir-1.10.0_1: ........ done `-- Extracting py27-pathlib2-2.3.5: ........ done `-- Installing py27-pluggy-0.12.0... | `-- Installing py27-importlib-metadata-0.23... | | `-- Installing py27-configparser-3.5.3_1,1... | | `-- Extracting py27-configparser-3.5.3_1,1: .......... done | | `-- Installing py27-contextlib2-0.6.0... | | `-- Extracting py27-contextlib2-0.6.0: ....... done | | `-- Installing py27-zipp-0.6.0_3... | | `-- Extracting py27-zipp-0.6.0_3: ........ done | `-- Extracting py27-importlib-metadata-0.23: .......... done `-- Extracting py27-pluggy-0.12.0: .......... done `-- Installing py27-py-1.8.1... `-- Extracting py27-py-1.8.1: .......... done `-- Installing py27-wcwidth-0.1.8... `-- Extracting py27-wcwidth-0.1.8: .......... done Extracting py27-pytest-4.5.0: .......... done ===> py27-MDAnalysisTests-0.19.2_2 depends on package: py27-pytest>=3.1.2 - found ===> Returning to build of py27-MDAnalysisTests-0.19.2_2 ===> py27-MDAnalysisTests-0.19.2_2 depends on package: py27-hypothesis>0 - not found ===> Installing existing package /packages/All/py27-hypothesis-4.57.1.txz Installing py27-hypothesis-4.57.1... `-- Installing py27-sortedcontainers-2.1.0... `-- Extracting py27-sortedcontainers-2.1.0: .......... done Extracting py27-hypothesis-4.57.1: .......... done ===> py27-MDAnalysisTests-0.19.2_2 depends on package: py27-hypothesis>0 - found ===> Returning to build of py27-MDAnalysisTests-0.19.2_2 ===> py27-MDAnalysisTests-0.19.2_2 depends on package: py27-psutil>=4.0.2 - not found ===> Installing existing package /packages/All/py27-psutil-5.6.7_1.txz Installing py27-psutil-5.6.7_1... Extracting py27-psutil-5.6.7_1: .......... done ===> py27-MDAnalysisTests-0.19.2_2 depends on package: py27-psutil>=4.0.2 - found ===> Returning to build of py27-MDAnalysisTests-0.19.2_2 ===> py27-MDAnalysisTests-0.19.2_2 depends on package: py27-mock>=2.0.0 - found ===> py27-MDAnalysisTests-0.19.2_2 depends on package: py27-setuptools>0 - found ===> py27-MDAnalysisTests-0.19.2_2 depends on file: /usr/local/bin/python2.7 - found -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for py27-MDAnalysisTests-0.19.2_2 ===> Generating temporary packing list running install running build running build_py running install_lib creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7 creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_pdb.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_amber_inpcrd.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_dlpoly.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_txyz.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_copying.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_gro.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_pqr.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_windows.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/base.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_lammps.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_gms.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_xdr.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_reader_api.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_xyz.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_dms.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_null.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_netcdf.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_dcd.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_gsd.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_memory.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_crd.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_pdbqt.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/reference.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_trj.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_chainreader.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_mmtf.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_writer_registration.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_timestep_api.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_trz.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_mol2.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/formats copying build/lib/MDAnalysisTests/formats/test_libmdaxdr.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/formats copying build/lib/MDAnalysisTests/formats/test_libdcd.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/formats copying build/lib/MDAnalysisTests/formats/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/formats creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/import copying build/lib/MDAnalysisTests/import/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/import copying build/lib/MDAnalysisTests/import/test_import.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/import copying build/lib/MDAnalysisTests/import/fork_called.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/import creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_lammpsdata.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_gsd.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_dms.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_minimal.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_mmtf.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_pdb.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_topology_base.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_psf.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_xyz.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_tprparser.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_xpdb.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_top.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/base.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_hoomdxml.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_guessers.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_mol2.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_gro.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_gms.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_txyz.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_pdbqt.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_pqr.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_dlpoly.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_crd.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_topology_str_types.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/topology creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/visualization copying build/lib/MDAnalysisTests/visualization/test_streamlines.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/visualization copying build/lib/MDAnalysisTests/visualization/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/visualization creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_modelling.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_failure.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_selections.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_meta.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_transformations.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_log.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_qcprot.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_authors.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_duecredit.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_nuclinfo.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_deprecated.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_streamio.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_persistence.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_imports.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_altloc.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_datafiles.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_units.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/utils creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/173D.mmtf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/test.xvg -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/bad_num_col.xvg -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/test_highf.xvg -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/test_lowf.xvg -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_2016.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.2.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_5.1.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.2.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.2.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy.top -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.mdp -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy.mdp -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.4.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.5.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.4.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_2018.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.5.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/ab42_gmx_4.6.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.4.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.6.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.3.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/ab42_gmx_4.6.1.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.3.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/drew_gmx_4.5.5.double.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.1.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.5.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.7.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/1k5i.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/unordered_res.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/sameresid_diffresname.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/1hvr.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/fullerene.pdb.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/contacts copying build/lib/MDAnalysisTests/data/contacts/villin_folded.gro.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/contacts copying build/lib/MDAnalysisTests/data/contacts/2F4K_qlist5_remap.dat -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/contacts copying build/lib/MDAnalysisTests/data/contacts/villin_unfolded.gro.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/contacts copying build/lib/MDAnalysisTests/data/two_water_gro_nonames.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/dppc_vesicle_hg.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/19hc.pdb.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/two_water_gro.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_open.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/test.fasta -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa_rama.npy -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_closed.dms -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/legacy_DCD_c36_coords.npy -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_closed.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/nmr_neopetrosiamide.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/watdyn.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/helanal_bending_matrix_AdK_DIMS_H8.dat -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/windows copying build/lib/MDAnalysisTests/data/windows/WIN_wat.lammpstrj -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/windows copying build/lib/MDAnalysisTests/data/windows/WIN_HISTORY -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/windows copying build/lib/MDAnalysisTests/data/windows/README.md -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/windows copying build/lib/MDAnalysisTests/data/windows/WIN_test.arc -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/windows copying build/lib/MDAnalysisTests/data/windows/WIN_nmr_neopetrosiamide.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/windows copying build/lib/MDAnalysisTests/data/windows/WIN_ache.mdcrd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/windows copying build/lib/MDAnalysisTests/data/model_then_cryst.pdb.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/two_water_gro_widebox.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/nosegid.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/A6PA6_alpha.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/gms copying build/lib/MDAnalysisTests/data/gms/surf2wat.gms -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/gms copying build/lib/MDAnalysisTests/data/gms/symopt.gms -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/gms copying build/lib/MDAnalysisTests/data/gms/c1opt.gms.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/gms creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/capping copying build/lib/MDAnalysisTests/data/capping/aaqaa.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/capping copying build/lib/MDAnalysisTests/data/capping/nma.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/capping copying build/lib/MDAnalysisTests/data/capping/maestro_aaqaa_capped.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/capping copying build/lib/MDAnalysisTests/data/capping/ace.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/capping copying build/lib/MDAnalysisTests/data/cryst_then_model.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/chainIDrepeat.pdb.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/1osm.pdb.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/make_whole.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/merge creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/merge/2zmm copying build/lib/MDAnalysisTests/data/merge/2zmm/ligand.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/merge/2zmm copying build/lib/MDAnalysisTests/data/merge/2zmm/protein.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/merge/2zmm copying build/lib/MDAnalysisTests/data/merge/2zmm/water.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/merge/2zmm copying build/lib/MDAnalysisTests/data/5KIH.mmtf.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_notop.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_open.crd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/plength.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/tip125_tric_C36.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_closed_NAMD.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/dlpoly copying build/lib/MDAnalysisTests/data/dlpoly/HISTORY_order -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/dlpoly copying build/lib/MDAnalysisTests/data/dlpoly/CONFIG -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/dlpoly copying build/lib/MDAnalysisTests/data/dlpoly/CONFIG_minimal -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/dlpoly copying build/lib/MDAnalysisTests/data/dlpoly/HISTORY_minimal -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/dlpoly copying build/lib/MDAnalysisTests/data/dlpoly/HISTORY -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/dlpoly copying build/lib/MDAnalysisTests/data/dlpoly/CONFIG_order -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/dlpoly copying build/lib/MDAnalysisTests/data/adk_oplsaa_janin.npy -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_open.pqr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/namd_cgenff.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/2r9r-1b.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/legacy_DCD_NAMD_coords.npy -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/mini.xyz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/1A2C.pqr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/1grm_elNemo_mode7.pdb.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/5digitResid.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_gbis_tmd-fast1_NAMD.dcd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/ifabp_apo_100mM.dcd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/hydrogen-class1.data -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/datatest.trz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/ifabp_apo_100mM.in -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/deletedatoms.data -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/ifabp_apo_100mM.data.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/datatest.data -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/mini.data -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/wat.lammpstrj.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/hydrogen-class1.data2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/watdyn.dcd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa.xtc -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/xyz_random_walk.xtc -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/tip125_tric_C36.dcd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/SiN_tric_namd.dcd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/pdbqt_inputpdbqt.pdbqt -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/empty.dcd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/residwrap.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/missing_atomname.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_dims.dcd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/trzfile.trz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_dims2.dcd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/nucl_res.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/1grm_single.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/cobrotoxin_protein_forces.xvg.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/sameresid_diffresname.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/SiN_tric_namd.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/trz_psf.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_notop_BAD.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/model_then_cryst.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/grovels.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/chainIDnewres.pdb.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/1a28.pdb.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/cobrotoxin.xtc -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/cryst_then_model.pdb.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/pdbqt_querypdb.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/C12x64.xml.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/4E43.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/cryst_then_model.pdb.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/namd_cgenff.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/incomplete.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/five.xyz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/2r9r-1b.xyz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/CONECT2TER.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/xl_serial.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/RANDOM_WALK_TOPO.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/cobrotoxin.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/align.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/ache.mdcrd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/bala.ncdf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/bala.trj -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/ace_mbondi3.error1.parm7 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/ace_mbondi3.error2.parm7 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/posfor.ncdf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/ache.prmtop -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/anti_md1.mdcrd.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/ace_mbondi3.error3.parm7 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/bala.prmtop -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/capped-ala.prmtop -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/chitosan.prmtop -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/anti.top -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/tz2.truncoct.nc -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/test.inpcrd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/capped-ala.mdcrd.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/tz2.truncoct.parm7.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/ache.mdcrd.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/posfor.top -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/ace_mbondi3.parm7 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/legacy_DCD_adk_coords.npy -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa_GLY_rama.npy -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/conect_parsing.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa_LYS_janin.npy -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/testENT.ent -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa_dihedral.npy -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.txyz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.dcd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.arc -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test_incomplete_vel.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.trr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/README.md -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.xyz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.xtc -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/new_hexane.arc -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test_topology.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.xyz.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/create_data.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.gro.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/empty_atom.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/model_then_cryst.pdb.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/cobrotoxin.trr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa.trr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/cobrotoxin_dry_neutral_0.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/bigbox.gro.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/cobrotoxin.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa_dihedral_list.npy -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/martini_dppc_chol_bilayer.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa_CA_rmsf.npy -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/sample_velocity_file.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/2r9r-1b.xyz.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/example.gsd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/SINGLECONECT.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/residwrap_0base.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/mol2 copying build/lib/MDAnalysisTests/data/mol2/Molecule.mol2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/mol2 copying build/lib/MDAnalysisTests/data/mol2/zinc_856218.mol2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/mol2 copying build/lib/MDAnalysisTests/data/mol2/Molecules.mol2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/mol2 copying build/lib/MDAnalysisTests/data/mol2/BrokenMolecule.mol2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/mol2 creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/analysis copying build/lib/MDAnalysisTests/data/analysis/YiiP_lipids.gro.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/analysis copying build/lib/MDAnalysisTests/data/analysis/YiiP_lipids.xtc -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/analysis copying build/lib/MDAnalysisTests/data/analysis/align_bound.pdb.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/analysis copying build/lib/MDAnalysisTests/data/analysis/align_unbound.pdb.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/data/analysis creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_groups.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_flag_deprecations.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_fragments.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_atomselections.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_atomgroup.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_topologyattrs.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_topologyobjects.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_topology.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_copying.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_atom.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_index_dtype.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_universe.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_group_traj_access.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_residue.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_segment.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_updating_atomgroup.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_requires.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_segmentgroup.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_residuegroup.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/core creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_rms.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_dihedrals.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_pca.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_encore.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_leaflet.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_data.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_helanal.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_density.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_base.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_contacts.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_hbonds.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_hole.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_align.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_rdf_s.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_wbridge.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_rdf.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_diffusionmap.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_distances.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_persistencelength.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_lineardensity.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_waterdynamics.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_gnm.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_psa.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_nuclinfo.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/test_api.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/lib copying build/lib/MDAnalysisTests/lib/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/lib copying build/lib/MDAnalysisTests/lib/test_neighborsearch.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/lib copying build/lib/MDAnalysisTests/lib/test_cutil.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/lib copying build/lib/MDAnalysisTests/lib/test_nsgrid.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/lib copying build/lib/MDAnalysisTests/lib/test_pkdtree.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/lib copying build/lib/MDAnalysisTests/lib/test_distances.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/lib copying build/lib/MDAnalysisTests/lib/test_util.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/lib copying build/lib/MDAnalysisTests/lib/test_augment.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/lib copying build/lib/MDAnalysisTests/tempdir.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests copying build/lib/MDAnalysisTests/datafiles.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests copying build/lib/MDAnalysisTests/dummy.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests copying build/lib/MDAnalysisTests/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests copying build/lib/MDAnalysisTests/util.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/auxiliary copying build/lib/MDAnalysisTests/auxiliary/base.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/auxiliary copying build/lib/MDAnalysisTests/auxiliary/test_xvg.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/auxiliary copying build/lib/MDAnalysisTests/auxiliary/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/auxiliary byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates/test_pdb.py to test_pdb.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates/test_amber_inpcrd.py to test_amber_inpcrd.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates/test_dlpoly.py to test_dlpoly.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates/test_txyz.py to test_txyz.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates/test_copying.py to test_copying.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates/test_gro.py to test_gro.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates/test_pqr.py to test_pqr.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates/test_windows.py to test_windows.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates/base.py to base.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates/test_lammps.py to test_lammps.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates/__init__.py to __init__.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates/test_gms.py to test_gms.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates/test_xdr.py to test_xdr.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates/test_reader_api.py to test_reader_api.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates/test_xyz.py to test_xyz.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates/test_dms.py to test_dms.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates/test_null.py to test_null.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates/test_netcdf.py to test_netcdf.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates/test_dcd.py to test_dcd.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates/test_gsd.py to test_gsd.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates/test_memory.py to test_memory.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates/test_crd.py to test_crd.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates/test_pdbqt.py to test_pdbqt.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates/reference.py to reference.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates/test_trj.py to test_trj.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates/test_chainreader.py to test_chainreader.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates/test_mmtf.py to test_mmtf.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates/test_writer_registration.py to test_writer_registration.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/coordinates/test_timestep_api.py to test_timestep_api.pyc 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byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/auxiliary/test_xvg.py to test_xvg.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests/auxiliary/__init__.py to __init__.pyc writing byte-compilation script '/tmp/tmptjIZ_n.py' /usr/local/bin/python2.7 -O /tmp/tmptjIZ_n.py removing /tmp/tmptjIZ_n.py running install_egg_info running egg_info writing requirements to MDAnalysisTests.egg-info/requires.txt writing MDAnalysisTests.egg-info/PKG-INFO writing top-level names to MDAnalysisTests.egg-info/top_level.txt writing dependency_links to MDAnalysisTests.egg-info/dependency_links.txt reading manifest file 'MDAnalysisTests.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'TODO' warning: no files found matching 'SUMMARY.txt' warning: no previously-included files matching '*~' found anywhere in distribution warning: no previously-included files matching '*.pkl' found anywhere in distribution writing manifest file 'MDAnalysisTests.egg-info/SOURCES.txt' Copying MDAnalysisTests.egg-info to /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python2.7/site-packages/MDAnalysisTests-0.19.2-py2.7.egg-info running install_scripts writing list of installed files to '/construction/science/py-MDAnalysisTests/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for py27-MDAnalysisTests-0.19.2_2 file sizes/checksums [663]: ....... done packing files [663]: ....... done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Saturday, 15 FEB 2020 at 16:56:53 UTC Duration: 00:03:26