=> Building science/packmol Started : Saturday, 15 FEB 2020 at 16:52:24 UTC Platform: 5.7-DEVELOPMENT DragonFly v5.7.0.1432.g9cd86-DEVELOPMENT #23: Thu Feb 13 14:43:04 PST 2020 root@sting.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.7-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.7-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- F77="gfortran8" FC="gfortran8" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc8" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc8" XDG_DATA_HOME=/construction/science/packmol XDG_CONFIG_HOME=/construction/science/packmol HOME=/construction/science/packmol TMPDIR="/tmp" PATH=/construction/science/packmol/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- F77="gfortran8" FC="gfortran8" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc8" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc8" XDG_DATA_HOME=/construction/science/packmol XDG_CONFIG_HOME=/construction/science/packmol HOME=/construction/science/packmol TMPDIR="/tmp" PATH=/construction/science/packmol/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/science/packmol/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- CMAKE_BUILD_TYPE="release" OSREL=5.7 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/packmol" EXAMPLESDIR="share/examples/packmol" DATADIR="share/packmol" WWWDIR="www/packmol" ETCDIR="etc/packmol" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/packmol DOCSDIR=/usr/local/share/doc/packmol EXAMPLESDIR=/usr/local/share/examples/packmol WWWDIR=/usr/local/www/packmol ETCDIR=/usr/local/etc/packmol -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=LiveSystem USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=15 DPORTS_BUILDER= yes DISABLE_LICENSES= yes DEFAULT_VERSIONS= ssl=openssl FORCE_PACKAGE= yes DEVELOPER= yes HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.30.1 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=32 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500709 OSVERSION=9999999 OSREL=5.7 _OSRELEASE=5.7-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> packmol-18.169 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.12.0_1.txz Installing pkg-1.12.0_1... Extracting pkg-1.12.0_1: .......... done ===> packmol-18.169 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of packmol-18.169 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- => mcubeg-packmol-18.169_GH0.tar.gz doesn't seem to exist in /distfiles/. => Attempting to fetch https://codeload.github.com/mcubeg/packmol/tar.gz/18.169?dummy=/mcubeg-packmol-18.169_GH0.tar.gz fetch: https://codeload.github.com/mcubeg/packmol/tar.gz/18.169?dummy=/mcubeg-packmol-18.169_GH0.tar.gz: size unknown fetch: https://codeload.github.com/mcubeg/packmol/tar.gz/18.169?dummy=/mcubeg-packmol-18.169_GH0.tar.gz: size of remote file is not known mcubeg-packmol-18.169_GH0.tar.gz 165 kB 677 kBps 00s ===> Fetching all distfiles required by packmol-18.169 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> Fetching all distfiles required by packmol-18.169 for building => SHA256 Checksum OK for mcubeg-packmol-18.169_GH0.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> Fetching all distfiles required by packmol-18.169 for building ===> Extracting for packmol-18.169 => SHA256 Checksum OK for mcubeg-packmol-18.169_GH0.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for packmol-18.169 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> packmol-18.169 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-3.16.4.txz Installing cmake-3.16.4... `-- Installing curl-7.68.0... | `-- Installing ca_root_nss-3.50... | `-- Extracting ca_root_nss-3.50: ..... done | `-- Installing libnghttp2-1.40.0... | `-- Extracting libnghttp2-1.40.0: ....... done | `-- Installing openssl-1.1.1d,1... | `-- Extracting openssl-1.1.1d,1: .......... done `-- Extracting curl-7.68.0: .......... done `-- Installing expat-2.2.8... `-- Extracting expat-2.2.8: .......... done `-- Installing jsoncpp-1.9.2... `-- Extracting jsoncpp-1.9.2: .......... done `-- Installing libarchive-3.4.0,1... | `-- Installing liblz4-1.9.2_1,1... | `-- Extracting liblz4-1.9.2_1,1: .......... done | `-- Installing lzo2-2.10_1... | `-- Extracting lzo2-2.10_1: .......... done `-- Extracting libarchive-3.4.0,1: .......... done `-- Installing libuv-1.34.2... `-- Extracting libuv-1.34.2: .......... done `-- Installing ncurses-6.1.20190525... `-- Extracting ncurses-6.1.20190525: .......... done `-- Installing rhash-1.3.5... `-- Extracting rhash-1.3.5: .......... done Extracting cmake-3.16.4: .......... done ===== Message from ca_root_nss-3.50: -- FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem ===> packmol-18.169 depends on file: /usr/local/bin/cmake - found ===> Returning to build of packmol-18.169 ===> packmol-18.169 depends on executable: gfortran8 - not found ===> Installing existing package /packages/All/gcc8-8.3.0_3.txz Installing gcc8-8.3.0_3... `-- Installing binutils-2.33.1_2,1... | `-- Installing gettext-runtime-0.20.1... | | `-- Installing indexinfo-0.3.1... | | `-- Extracting indexinfo-0.3.1: . done | `-- Extracting gettext-runtime-0.20.1: .......... done `-- Extracting binutils-2.33.1_2,1: .......... done `-- Installing gmp-6.1.2_1... `-- Extracting gmp-6.1.2_1: .......... done `-- Installing mpc-1.1.0_2... | `-- Installing mpfr-4.0.2... | `-- Extracting mpfr-4.0.2: .......... done `-- Extracting mpc-1.1.0_2: ...... done Extracting gcc8-8.3.0_3: .......... done ===== Message from gcc8-8.3.0_3: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> packmol-18.169 depends on executable: gfortran8 - found ===> Returning to build of packmol-18.169 ===> packmol-18.169 depends on file: /usr/local/bin/as - found -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for packmol-18.169 ===> Performing out-of-source build /bin/mkdir -p /construction/science/packmol/.build -- The Fortran compiler identification is GNU 8.3.0 -- Check for working Fortran compiler: /usr/local/bin/gfortran8 -- Check for working Fortran compiler: /usr/local/bin/gfortran8 -- works -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Checking whether /usr/local/bin/gfortran8 supports Fortran 90 -- Checking whether /usr/local/bin/gfortran8 supports Fortran 90 -- yes -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_CXX_COMPILER CMAKE_CXX_FLAGS CMAKE_CXX_FLAGS_DEBUG CMAKE_CXX_FLAGS_RELEASE CMAKE_C_COMPILER CMAKE_C_FLAGS CMAKE_C_FLAGS_DEBUG CMAKE_C_FLAGS_RELEASE CMAKE_MODULE_LINKER_FLAGS CMAKE_SHARED_LINKER_FLAGS THREADS_HAVE_PTHREAD_ARG -- Build files have been written to: /construction/science/packmol/.build -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for packmol-18.169 /usr/local/bin/cmake -S/construction/science/packmol/packmol-18.169 -B/construction/science/packmol/.build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/local/bin/cmake -E cmake_progress_start /construction/science/packmol/.build/CMakeFiles /construction/science/packmol/.build/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all --- CMakeFiles/packmol.dir/all --- /usr/bin/make -f CMakeFiles/packmol.dir/build.make CMakeFiles/packmol.dir/depend --- CMakeFiles/packmol.dir/depend --- cd /construction/science/packmol/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/packmol/packmol-18.169 /construction/science/packmol/packmol-18.169 /construction/science/packmol/.build /construction/science/packmol/.build /construction/science/packmol/.build/CMakeFiles/packmol.dir/DependInfo.cmake Scanning dependencies of target packmol /usr/bin/make -f CMakeFiles/packmol.dir/build.make CMakeFiles/packmol.dir/build --- CMakeFiles/packmol.dir/ahestetic.f90.o --- --- CMakeFiles/packmol.dir/sizes.f90.o --- --- CMakeFiles/packmol.dir/swaptypemod.f90.o --- --- CMakeFiles/packmol.dir/gencan.f.o --- --- CMakeFiles/packmol.dir/strlength.f90.o --- --- CMakeFiles/packmol.dir/setibox.f90.o --- --- CMakeFiles/packmol.dir/flashsort.f90.o --- --- CMakeFiles/packmol.dir/jacobi.f90.o --- --- CMakeFiles/packmol.dir/random.f90.o --- --- CMakeFiles/packmol.dir/swaptypemod.f90.o --- [ 7%] Building Fortran object CMakeFiles/packmol.dir/swaptypemod.f90.o /usr/local/bin/gfortran8 -O -Wl,-rpath=/usr/local/lib/gcc8 -Wall -c /construction/science/packmol/packmol-18.169/swaptypemod.f90 -o CMakeFiles/packmol.dir/swaptypemod.f90.o --- CMakeFiles/packmol.dir/ahestetic.f90.o --- [ 7%] Building Fortran object CMakeFiles/packmol.dir/ahestetic.f90.o /usr/local/bin/gfortran8 -O -Wl,-rpath=/usr/local/lib/gcc8 -Wall -c /construction/science/packmol/packmol-18.169/ahestetic.f90 -o CMakeFiles/packmol.dir/ahestetic.f90.o --- 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/construction/science/packmol/packmol-18.169/gencan.f:5654:5: 50 IF (DX(I).EQ.ZERO) GO TO 200 1 Warning: Label 50 at (1) defined but not used [-Wunused-label] /construction/science/packmol/packmol-18.169/gencan.f:5652:5: 30 IF (DABS(DX(I)).GT.CUTLO) GO TO 85 1 Warning: Label 30 at (1) defined but not used [-Wunused-label] --- CMakeFiles/packmol.dir/gparc.f90.o --- /usr/local/bin/gfortran8 -O -Wl,-rpath=/usr/local/lib/gcc8 -Wall -c /construction/science/packmol/packmol-18.169/gparc.f90 -o CMakeFiles/packmol.dir/gparc.f90.o --- CMakeFiles/packmol.dir/output.f90.o --- [ 47%] Building Fortran object CMakeFiles/packmol.dir/output.f90.o --- CMakeFiles/packmol.dir/fparc.f90.o --- [ 50%] Building Fortran object CMakeFiles/packmol.dir/fparc.f90.o --- CMakeFiles/packmol.dir/output.f90.o --- /usr/local/bin/gfortran8 -O -Wl,-rpath=/usr/local/lib/gcc8 -Wall -c /construction/science/packmol/packmol-18.169/output.f90 -o CMakeFiles/packmol.dir/output.f90.o --- CMakeFiles/packmol.dir/fparc.f90.o --- /usr/local/bin/gfortran8 -O -Wl,-rpath=/usr/local/lib/gcc8 -Wall -c /construction/science/packmol/packmol-18.169/fparc.f90 -o CMakeFiles/packmol.dir/fparc.f90.o --- CMakeFiles/packmol.dir/polartocart.f90.o --- [ 52%] Building Fortran object CMakeFiles/packmol.dir/polartocart.f90.o /usr/local/bin/gfortran8 -O -Wl,-rpath=/usr/local/lib/gcc8 -Wall -c /construction/science/packmol/packmol-18.169/polartocart.f90 -o CMakeFiles/packmol.dir/polartocart.f90.o --- CMakeFiles/packmol.dir/comprest.f90.o --- [ 55%] Building Fortran object CMakeFiles/packmol.dir/comprest.f90.o /usr/local/bin/gfortran8 -O -Wl,-rpath=/usr/local/lib/gcc8 -Wall -c /construction/science/packmol/packmol-18.169/comprest.f90 -o CMakeFiles/packmol.dir/comprest.f90.o --- CMakeFiles/packmol.dir/gwalls.f90.o --- [ 57%] Building Fortran object CMakeFiles/packmol.dir/gwalls.f90.o --- CMakeFiles/packmol.dir/computeg.f90.o --- [ 60%] Building Fortran object CMakeFiles/packmol.dir/computeg.f90.o --- CMakeFiles/packmol.dir/gwalls.f90.o --- /usr/local/bin/gfortran8 -O -Wl,-rpath=/usr/local/lib/gcc8 -Wall -c /construction/science/packmol/packmol-18.169/gwalls.f90 -o CMakeFiles/packmol.dir/gwalls.f90.o --- CMakeFiles/packmol.dir/computeg.f90.o --- /usr/local/bin/gfortran8 -O -Wl,-rpath=/usr/local/lib/gcc8 -Wall -c /construction/science/packmol/packmol-18.169/computeg.f90 -o CMakeFiles/packmol.dir/computeg.f90.o --- CMakeFiles/packmol.dir/resetboxes.f90.o --- [ 63%] Building Fortran object CMakeFiles/packmol.dir/resetboxes.f90.o /usr/local/bin/gfortran8 -O -Wl,-rpath=/usr/local/lib/gcc8 -Wall -c /construction/science/packmol/packmol-18.169/resetboxes.f90 -o CMakeFiles/packmol.dir/resetboxes.f90.o --- CMakeFiles/packmol.dir/cenmass.f90.o --- [ 65%] Building Fortran object CMakeFiles/packmol.dir/cenmass.f90.o /usr/local/bin/gfortran8 -O -Wl,-rpath=/usr/local/lib/gcc8 -Wall -c /construction/science/packmol/packmol-18.169/cenmass.f90 -o CMakeFiles/packmol.dir/cenmass.f90.o --- CMakeFiles/packmol.dir/setijk.f90.o --- --- CMakeFiles/packmol.dir/swaptype.f90.o --- --- CMakeFiles/packmol.dir/tobar.f90.o --- --- CMakeFiles/packmol.dir/writesuccess.f90.o --- --- CMakeFiles/packmol.dir/setijk.f90.o --- [ 68%] Building Fortran object CMakeFiles/packmol.dir/setijk.f90.o /usr/local/bin/gfortran8 -O -Wl,-rpath=/usr/local/lib/gcc8 -Wall -c /construction/science/packmol/packmol-18.169/setijk.f90 -o CMakeFiles/packmol.dir/setijk.f90.o --- CMakeFiles/packmol.dir/swaptype.f90.o --- [ 71%] Building Fortran object CMakeFiles/packmol.dir/swaptype.f90.o /usr/local/bin/gfortran8 -O -Wl,-rpath=/usr/local/lib/gcc8 -Wall -c /construction/science/packmol/packmol-18.169/swaptype.f90 -o CMakeFiles/packmol.dir/swaptype.f90.o --- CMakeFiles/packmol.dir/tobar.f90.o --- [ 73%] Building Fortran object CMakeFiles/packmol.dir/tobar.f90.o /usr/local/bin/gfortran8 -O -Wl,-rpath=/usr/local/lib/gcc8 -Wall -c /construction/science/packmol/packmol-18.169/tobar.f90 -o CMakeFiles/packmol.dir/tobar.f90.o --- CMakeFiles/packmol.dir/usegencan.mod.stamp --- /usr/local/bin/cmake -E cmake_copy_f90_mod usegencan.mod CMakeFiles/packmol.dir/usegencan.mod.stamp GNU --- CMakeFiles/packmol.dir/gencan.f.o --- /construction/science/packmol/packmol-18.169/gencan.f:62:37: subroutine evalnal(n,x,m,lambda,rho,g,flag) 1 Warning: Unused dummy argument 'lambda' at (1) [-Wunused-dummy-argument] /construction/science/packmol/packmol-18.169/gencan.f:62:41: subroutine evalnal(n,x,m,lambda,rho,g,flag) 1 Warning: Unused dummy argument 'rho' at (1) [-Wunused-dummy-argument] /construction/science/packmol/packmol-18.169/gencan.f:2585:40: +steabs,epsrel,epsabs,infrel,infabs) 1 Warning: Unused dummy argument 'infabs' at (1) [-Wunused-dummy-argument] /construction/science/packmol/packmol-18.169/gencan.f:2585:33: +steabs,epsrel,epsabs,infrel,infabs) 1 Warning: Unused dummy argument 'infrel' at (1) [-Wunused-dummy-argument] /construction/science/packmol/packmol-18.169/gencan.f:2585:12: +steabs,epsrel,epsabs,infrel,infabs) 1 Warning: Unused dummy argument 'steabs' at (1) [-Wunused-dummy-argument] /construction/science/packmol/packmol-18.169/gencan.f:2584:71: +fmin,maxfc,iprint,fcnt,inform,xtrial,d,gamma,sigma1,sigma2,sterel, 1 Warning: Unused dummy argument 'sterel' at (1) [-Wunused-dummy-argument] /construction/science/packmol/packmol-18.169/gencan.f:3819:61: +sigma1,sigma2,sterel,steabs,epsrel,epsabs,infrel,infabs) 1 Warning: Unused dummy argument 'infabs' at (1) [-Wunused-dummy-argument] /construction/science/packmol/packmol-18.169/gencan.f:3819:54: +sigma1,sigma2,sterel,steabs,epsrel,epsabs,infrel,infabs) 1 Warning: Unused dummy argument 'infrel' at (1) [-Wunused-dummy-argument] --- CMakeFiles/packmol.dir/writesuccess.f90.o --- [ 76%] Building Fortran object CMakeFiles/packmol.dir/writesuccess.f90.o /usr/local/bin/gfortran8 -O -Wl,-rpath=/usr/local/lib/gcc8 -Wall -c /construction/science/packmol/packmol-18.169/writesuccess.f90 -o CMakeFiles/packmol.dir/writesuccess.f90.o --- CMakeFiles/packmol.dir/gencan.f.o --- /construction/science/packmol/packmol-18.169/gencan.f:4:36: subroutine evalal(n,x,m,lambda,rho,f,flag) 1 Warning: Unused dummy argument 'lambda' at (1) [-Wunused-dummy-argument] /construction/science/packmol/packmol-18.169/gencan.f:4:40: subroutine evalal(n,x,m,lambda,rho,f,flag) 1 Warning: Unused dummy argument 'rho' at (1) [-Wunused-dummy-argument] /construction/science/packmol/packmol-18.169/gencan.f:2981:19: +epsabs,infrel,infabs) 1 Warning: Unused dummy argument 'infrel' at (1) [-Wunused-dummy-argument] --- CMakeFiles/packmol.dir/checkpoint.f90.o --- --- CMakeFiles/packmol.dir/gencan.f.o --- /construction/science/packmol/packmol-18.169/gencan.f:5179:19: +steabs,inform) 1 Warning: Unused dummy argument 'inform' at (1) [-Wunused-dummy-argument] /construction/science/packmol/packmol-18.169/gencan.f:5178:52: subroutine calchd(nind,ind,x,d,g,n,xc,m,lambda,rho,hd,xtmp,sterel, 1 Warning: Unused dummy argument 'lambda' at (1) [-Wunused-dummy-argument] /construction/science/packmol/packmol-18.169/gencan.f:5178:56: subroutine calchd(nind,ind,x,d,g,n,xc,m,lambda,rho,hd,xtmp,sterel, 1 Warning: Unused dummy argument 'rho' at (1) [-Wunused-dummy-argument] /construction/science/packmol/packmol-18.169/gencan.f:5179:12: +steabs,inform) 1 Warning: Unused dummy argument 'steabs' at (1) [-Wunused-dummy-argument] /construction/science/packmol/packmol-18.169/gencan.f:5178:71: subroutine calchd(nind,ind,x,d,g,n,xc,m,lambda,rho,hd,xtmp,sterel, 1 Warning: Unused dummy argument 'sterel' at (1) [-Wunused-dummy-argument] /construction/science/packmol/packmol-18.169/gencan.f:5178:64: subroutine calchd(nind,ind,x,d,g,n,xc,m,lambda,rho,hd,xtmp,sterel, 1 Warning: Unused dummy argument 'xtmp' at (1) [-Wunused-dummy-argument] /construction/science/packmol/packmol-18.169/gencan.f:125:25: subroutine evalhd(n) 1 Warning: Unused dummy argument 'n' at (1) [-Wunused-dummy-argument] --- CMakeFiles/packmol.dir/getinp.f90.o --- --- CMakeFiles/packmol.dir/checkpoint.f90.o --- [ 78%] Building Fortran object CMakeFiles/packmol.dir/checkpoint.f90.o --- CMakeFiles/packmol.dir/getinp.f90.o --- [ 81%] Building Fortran object CMakeFiles/packmol.dir/getinp.f90.o --- CMakeFiles/packmol.dir/checkpoint.f90.o --- /usr/local/bin/gfortran8 -O -Wl,-rpath=/usr/local/lib/gcc8 -Wall -c /construction/science/packmol/packmol-18.169/checkpoint.f90 -o CMakeFiles/packmol.dir/checkpoint.f90.o --- CMakeFiles/packmol.dir/getinp.f90.o --- /usr/local/bin/gfortran8 -O -Wl,-rpath=/usr/local/lib/gcc8 -Wall -c /construction/science/packmol/packmol-18.169/getinp.f90 -o CMakeFiles/packmol.dir/getinp.f90.o --- CMakeFiles/packmol.dir/heuristics.f90.o --- [ 84%] Building Fortran object CMakeFiles/packmol.dir/heuristics.f90.o /usr/local/bin/gfortran8 -O -Wl,-rpath=/usr/local/lib/gcc8 -Wall -c /construction/science/packmol/packmol-18.169/heuristics.f90 -o CMakeFiles/packmol.dir/heuristics.f90.o --- CMakeFiles/packmol.dir/initial.f90.o --- [ 86%] Building Fortran object CMakeFiles/packmol.dir/initial.f90.o /usr/local/bin/gfortran8 -O -Wl,-rpath=/usr/local/lib/gcc8 -Wall -c /construction/science/packmol/packmol-18.169/initial.f90 -o CMakeFiles/packmol.dir/initial.f90.o --- CMakeFiles/packmol.dir/packmol.f90.o --- [ 89%] Building Fortran object CMakeFiles/packmol.dir/packmol.f90.o /usr/local/bin/gfortran8 -O -Wl,-rpath=/usr/local/lib/gcc8 -Wall -c /construction/science/packmol/packmol-18.169/packmol.f90 -o CMakeFiles/packmol.dir/packmol.f90.o --- CMakeFiles/packmol.dir/pgencan.f90.o --- --- CMakeFiles/packmol.dir/restmol.f90.o --- --- CMakeFiles/packmol.dir/pgencan.f90.o --- [ 92%] Building Fortran object CMakeFiles/packmol.dir/pgencan.f90.o /usr/local/bin/gfortran8 -O -Wl,-rpath=/usr/local/lib/gcc8 -Wall -c /construction/science/packmol/packmol-18.169/pgencan.f90 -o CMakeFiles/packmol.dir/pgencan.f90.o --- CMakeFiles/packmol.dir/restmol.f90.o --- [ 94%] Building Fortran object CMakeFiles/packmol.dir/restmol.f90.o /usr/local/bin/gfortran8 -O -Wl,-rpath=/usr/local/lib/gcc8 -Wall -c /construction/science/packmol/packmol-18.169/restmol.f90 -o CMakeFiles/packmol.dir/restmol.f90.o --- CMakeFiles/packmol.dir/setsizes.f90.o --- [ 97%] Building Fortran object CMakeFiles/packmol.dir/setsizes.f90.o /usr/local/bin/gfortran8 -O -Wl,-rpath=/usr/local/lib/gcc8 -Wall -c /construction/science/packmol/packmol-18.169/setsizes.f90 -o CMakeFiles/packmol.dir/setsizes.f90.o --- CMakeFiles/packmol.dir/usegencan.f90.o.provides.build --- /usr/local/bin/cmake -E touch CMakeFiles/packmol.dir/usegencan.f90.o.provides.build --- CMakeFiles/packmol.dir/output.f90.o --- /construction/science/packmol/packmol-18.169/output.f90:420:0: nres = ilres - ifres + 1 Warning: 'ilres' may be used uninitialized in this function [-Wmaybe-uninitialized] --- CMakeFiles/packmol.dir/getinp.f90.o --- /construction/science/packmol/packmol-18.169/getinp.f90:863:0: if(ires.ne.ireslast) then Warning: 'ireslast' may be used uninitialized in this function [-Wmaybe-uninitialized] --- CMakeFiles/packmol.dir/packmol.f90.o --- /construction/science/packmol/packmol-18.169/packmol.f90:806:0: if(flast.gt.0.d0) fimp = -100.d0 * (fx - flast) / flast Warning: 'flast' may be used uninitialized in this function [-Wmaybe-uninitialized] /construction/science/packmol/packmol-18.169/packmol.f90:321:0: iratom(icart,iratcount) = iirest Warning: 'iirest' may be used uninitialized in this function [-Wmaybe-uninitialized] --- CMakeFiles/packmol.dir/gencan.f.o --- /construction/science/packmol/packmol-18.169/gencan.f:3346:0: beta = rnorm2 / rnorm2prev Warning: 'rnorm2prev' may be used uninitialized in this function [-Wmaybe-uninitialized] /construction/science/packmol/packmol-18.169/gencan.f:3644:0: rbdtype = rbdposatype Warning: 'rbdposatype' may be used uninitialized in this function [-Wmaybe-uninitialized] /construction/science/packmol/packmol-18.169/gencan.f:3643:0: rbdind = rbdposaind Warning: 'rbdposaind' may be used uninitialized in this function [-Wmaybe-uninitialized] /construction/science/packmol/packmol-18.169/gencan.f:3647:0: rbdtype = rbdnegatype Warning: 'rbdnegatype' may be used uninitialized in this function [-Wmaybe-uninitialized] /construction/science/packmol/packmol-18.169/gencan.f:3646:0: rbdind = rbdnegaind Warning: 'rbdnegaind' may be used uninitialized in this function [-Wmaybe-uninitialized] /construction/science/packmol/packmol-18.169/gencan.f:3353:0: + beta ** 2 * dnorm2 Warning: 'dtw' may be used uninitialized in this function [-Wmaybe-uninitialized] /construction/science/packmol/packmol-18.169/gencan.f:3353:0: Warning: 'dtr' may be used uninitialized in this function [-Wmaybe-uninitialized] /construction/science/packmol/packmol-18.169/gencan.f:3353:0: Warning: 'dnorm2' may be used uninitialized in this function [-Wmaybe-uninitialized] /construction/science/packmol/packmol-18.169/gencan.f:3495:0: amaxn = max( amax1n, amax2n ) Warning: 'amax1n' may be used uninitialized in this function [-Wmaybe-uninitialized] /construction/science/packmol/packmol-18.169/gencan.f:3494:0: amax = min( amax1 , amax2 ) Warning: 'amax1' may be used uninitialized in this function [-Wmaybe-uninitialized] /construction/science/packmol/packmol-18.169/gencan.f:3353:0: + beta ** 2 * dnorm2 Warning: 'alpha' may be used uninitialized in this function [-Wmaybe-uninitialized] /construction/science/packmol/packmol-18.169/gencan.f:2307:0: lamspg = sts / sty Warning: 'sty' may be used uninitialized in this function [-Wmaybe-uninitialized] /construction/science/packmol/packmol-18.169/gencan.f:2137:0: delta = max( delmin, 10.0d0 * sqrt( sts ) ) Warning: 'sts' may be used uninitialized in this function [-Wmaybe-uninitialized] --- packmol --- [100%] Linking Fortran executable packmol /usr/local/bin/cmake -E cmake_link_script CMakeFiles/packmol.dir/link.txt --verbose=1 /usr/local/bin/gfortran8 -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -O -Wl,-rpath=/usr/local/lib/gcc8 -Wall CMakeFiles/packmol.dir/cenmass.f90.o CMakeFiles/packmol.dir/gencan.f.o CMakeFiles/packmol.dir/pgencan.f90.o CMakeFiles/packmol.dir/initial.f90.o CMakeFiles/packmol.dir/title.f90.o CMakeFiles/packmol.dir/setsizes.f90.o CMakeFiles/packmol.dir/getinp.f90.o CMakeFiles/packmol.dir/strlength.f90.o CMakeFiles/packmol.dir/output.f90.o CMakeFiles/packmol.dir/checkpoint.f90.o CMakeFiles/packmol.dir/writesuccess.f90.o CMakeFiles/packmol.dir/fparc.f90.o CMakeFiles/packmol.dir/gparc.f90.o CMakeFiles/packmol.dir/gwalls.f90.o CMakeFiles/packmol.dir/comprest.f90.o CMakeFiles/packmol.dir/comparegrad.f90.o CMakeFiles/packmol.dir/packmol.f90.o CMakeFiles/packmol.dir/polartocart.f90.o CMakeFiles/packmol.dir/resetboxes.f90.o CMakeFiles/packmol.dir/tobar.f90.o CMakeFiles/packmol.dir/setijk.f90.o CMakeFiles/packmol.dir/setibox.f90.o CMakeFiles/packmol.dir/restmol.f90.o CMakeFiles/packmol.dir/swaptype.f90.o CMakeFiles/packmol.dir/swaptypemod.f90.o CMakeFiles/packmol.dir/ahestetic.f90.o CMakeFiles/packmol.dir/heuristics.f90.o CMakeFiles/packmol.dir/flashsort.f90.o CMakeFiles/packmol.dir/jacobi.f90.o CMakeFiles/packmol.dir/random.f90.o CMakeFiles/packmol.dir/sizes.f90.o CMakeFiles/packmol.dir/usegencan.f90.o CMakeFiles/packmol.dir/compute_data.f90.o CMakeFiles/packmol.dir/flashmod.f90.o CMakeFiles/packmol.dir/computef.f90.o CMakeFiles/packmol.dir/computeg.f90.o CMakeFiles/packmol.dir/input.f90.o -o packmol /usr/local/bin/ld: /usr/lib/libc.so: .dynsym local symbol at index 8 (>= sh_info of 6) [100%] Built target packmol /usr/local/bin/cmake -E cmake_progress_start /construction/science/packmol/.build/CMakeFiles 0 -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- ===> packmol-18.169 depends on executable: gfortran8 - found -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for packmol-18.169 ===> Generating temporary packing list /usr/local/bin/cmake -S/construction/science/packmol/packmol-18.169 -B/construction/science/packmol/.build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/local/bin/cmake -E cmake_progress_start /construction/science/packmol/.build/CMakeFiles /construction/science/packmol/.build/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f CMakeFiles/packmol.dir/build.make CMakeFiles/packmol.dir/depend cd /construction/science/packmol/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/packmol/packmol-18.169 /construction/science/packmol/packmol-18.169 /construction/science/packmol/.build /construction/science/packmol/.build /construction/science/packmol/.build/CMakeFiles/packmol.dir/DependInfo.cmake /usr/bin/make -f CMakeFiles/packmol.dir/build.make CMakeFiles/packmol.dir/build [100%] Built target packmol /usr/local/bin/cmake -E cmake_progress_start /construction/science/packmol/.build/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall Installing the project stripped... /usr/local/bin/cmake -DCMAKE_INSTALL_DO_STRIP=1 -P cmake_install.cmake -- Install configuration: "release" -- Installing: /construction/science/packmol/stage/usr/local/bin/packmol ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for packmol-18.169 file sizes/checksums [1]: . done packing files [1]: . done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Saturday, 15 FEB 2020 at 16:53:24 UTC Duration: 00:00:59